Citrus Sinensis ID: 022250

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEccccccccHHHHccccccccccEEccHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccHHHcHccccccEEEEEccccccccEEEEEcccccHHHHHHHHHHHccccEEEEEEEcccccccHHHHcccccccccEEcccHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHccccccHEEEcccccccccccccEEEEEEEcccccEEEEEEEEEccEEEEEEEEEccHHHHHHHHHHHHHHHHHccEEEEcccccc
Coil and Loop (DISEMBL)
matlgcqfhcrmhhisqnvkakrfiscstnppqsniKVIINGAVKEIGRAAVIAVTKARGMEvagaidshsvgedigmvcdmeqpleipvmSDLTMVLGSISQSKARAVVIDftdastvydnVKQATAFGMRSVVYVPHIQLETVSALSAFCdkasmgcliaptlsIGSILLQQAAISAsfhyknveivesrpnardfpspdaTQIANNLSNlgqiynredistDVKARGqvlgedgvrvhsmvlpglpssttvyfsrpgevysikhditdvqsLMPGLILAIRKVVHLKNLVYGLEKFL
Flexible Loop (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL
Low Complexity Region (SEG)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL
Disordered region (IsUnstruct)
***LGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV********************LSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLE***
Disordered Region (DISOPRED)
********HC***************************VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL
Disordered Region (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL
Disordered Region (DISPRO)
*ATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q9FJ82	298	Putative 4-hydroxy-tetrah	yes	no	0.986	0.993	0.774	1e-133
B8HRK9	275	4-hydroxy-tetrahydrodipic	yes	no	0.886	0.967	0.452	7e-58
Q8YU19	278	4-hydroxy-tetrahydrodipic	yes	no	0.89	0.960	0.434	1e-56
Q3MFY8	278	4-hydroxy-tetrahydrodipic	yes	no	0.89	0.960	0.431	2e-56
Q9S3W8	278	4-hydroxy-tetrahydrodipic	N/A	no	0.89	0.960	0.423	2e-56
Q10YI1	275	4-hydroxy-tetrahydrodipic	yes	no	0.886	0.967	0.437	2e-55
P72642	275	4-hydroxy-tetrahydrodipic	N/A	no	0.886	0.967	0.434	7e-55
B2J0A9	278	4-hydroxy-tetrahydrodipic	yes	no	0.886	0.956	0.425	1e-54
B7KBV6	275	4-hydroxy-tetrahydrodipic	yes	no	0.89	0.970	0.424	2e-54
B7JW41	275	4-hydroxy-tetrahydrodipic	yes	no	0.883	0.963	0.421	4e-52

>sp|Q9FJ82|DAPB3_ARATH Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1

 Score =  476 bits (1224), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/302 (77%), Positives = 264/302 (87%), Gaps = 6/302 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGV 238
           ASFHY NVE+VESRPNA D PSP+A QIANN+SNLGQIYNRED STDV+ARGQV+GEDGV
Sbjct: 177 ASFHYNNVELVESRPNAADLPSPEAIQIANNISNLGQIYNREDSSTDVQARGQVIGEDGV 236

Query: 239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEK 298
           RVHSMVLPGLPSST VYFS PG+VY++KHDI DV+SLMPGL+LAIRKVV LKNLVYGLEK
Sbjct: 237 RVHSMVLPGLPSSTQVYFSSPGDVYTVKHDIIDVRSLMPGLLLAIRKVVRLKNLVYGLEK 296

Query: 299 FL 300
           FL
Sbjct: 297 FL 298

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 6

>sp|B8HRK9|DAPB_CYAP4 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapB PE=3 SV=1

 Score =  224 bits (570), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 124/274 (45%), Positives = 176/274 (64%), Gaps = 8/274 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I VI+NGA  ++GR  V AV +A  + + GA+D +    G+DIG V  +  PLE+P+
Sbjct: 4   QGAIPVIVNGAAGKMGREVVKAVAQAADLTLFGAVDRNPSLQGQDIGEVVGI-GPLEVPL 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L + +Q     V++DFT  ++VYDNV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LADLQSLLVAAAQEPQAGVMVDFTHPNSVYDNVRMAIAYGVRPVVGTTGLSPEQIRDLAT 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANN 209
           F DKASMGCLI P  SIG +LLQQAAI AS ++ +VEI+E   N + D PS  A Q A  
Sbjct: 123 FADKASMGCLIIPNFSIGMVLLQQAAIQASQYFDHVEIIELHHNQKADAPSGTALQTAQL 182

Query: 210 LSNLGQIYNREDISTD---VKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIK 266
           L+ LG+ YN   +        ARG  L E+G+R+HS+ LPGL +   V F  PG+VY+++
Sbjct: 183 LAELGKTYNPPAVKETEHLAGARGS-LAEEGIRIHSVRLPGLIAHQEVIFGAPGQVYTLR 241

Query: 267 HDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           HD +D    MPG++LAIRKV++L+ +VYGLEK L
Sbjct: 242 HDTSDRSCYMPGVLLAIRKVMNLETVVYGLEKIL 275

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8YU19|DAPB_NOSS1 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dapB PE=3 SV=1

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/276 (43%), Positives = 175/276 (63%), Gaps = 9/276 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V AV +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAVAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIA 207
           + F +KAS GCLI P  SIG +LLQQAA++AS ++ +VEI+E   N + D PS  A Q A
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAIQTA 183

Query: 208 NNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
             L+ LG+ +N    E+      ARG  L E+G+R+HS+ LPGL +   V F  PG++Y+
Sbjct: 184 ELLAELGKTFNSAIVEETEKIPGARGS-LAEEGIRIHSVRLPGLIAHQEVIFGAPGQIYT 242

Query: 265 IKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           ++HD +D    MPG++LAIRKV+ LK+LVYGLEK L
Sbjct: 243 LRHDTSDRACYMPGVLLAIRKVLQLKSLVYGLEKIL 278

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q3MFY8|DAPB_ANAVT 4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dapB PE=3 SV=1

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/276 (43%), Positives = 175/276 (63%), Gaps = 9/276 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V A+ +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIA 207
           + F +KAS GCLI P  SIG +LLQQAA++AS ++ +VEI+E   N + D PS  A Q A
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAIQTA 183

Query: 208 NNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
             L+ LG+ +N    E+      ARG + GE G+R+HS+ LPGL +   V F  PG++Y+
Sbjct: 184 ELLAELGKTFNSAIVEETEKIPGARGSLAGE-GIRIHSVRLPGLIAHQEVIFGAPGQIYT 242

Query: 265 IKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           ++HD +D    MPG++LAIRKV+ LK+LVYGLEK L
Sbjct: 243 LRHDTSDRACYMPGVLLAIRKVLQLKSLVYGLEKIL 278

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9S3W8|DAPB_MASLA 4-hydroxy-tetrahydrodipicolinate reductase OS=Mastigocladus laminosus GN=dapB PE=3 SV=1

 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/276 (42%), Positives = 175/276 (63%), Gaps = 9/276 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  + AV +A  M + GA+D++    G+D G V  + +P E+P+
Sbjct: 4   QTPIPVIVNGAAGKMGRETIKAVVQAADMTLMGAVDTNPEYQGKDAGEVAGLNEPTEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
              L  +L  ++  +     V++DFT    VYDNV+ A A+G+R VV    +  + +  L
Sbjct: 64  TDQLEPILAYVAGERHLQPGVMVDFTHPDAVYDNVRSAIAYGIRPVVGTTGLSSKQIEQL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIA 207
           + F +KAS GCLI P  SIG +LLQQAAI+AS ++ +VEI+E   N + D PS  A Q A
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAIAASQYFDHVEIIELHHNQKADAPSGTAIQTA 183

Query: 208 NNLSNLGQIYNREDISTDVK---ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
             L+ +G+ +N+  +    K   ARG + GE G+R+HS+ LPGL +   V F  PG++Y+
Sbjct: 184 QMLAEMGKTFNQPAVKETEKLPGARGSLAGE-GIRIHSVRLPGLIAHQEVIFGAPGQIYT 242

Query: 265 IKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           ++HD +D  + MPG++LAIRKV+ LK+LVYGLEK L
Sbjct: 243 LRHDTSDRTAYMPGVLLAIRKVLQLKSLVYGLEKIL 278

Mastigocladus laminosus (taxid: 83541)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q10YI1|DAPB_TRIEI 4-hydroxy-tetrahydrodipicolinate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=dapB PE=3 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/274 (43%), Positives = 172/274 (62%), Gaps = 8/274 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPV 90
           Q++  VI+ GA  ++GR  +  V  A  M + GAI+     +G+DIG +     PLE+P+
Sbjct: 4   QTSTPVIVCGAAGKMGREVIKTVANASDMTLLGAIECQPEYIGQDIGELIG-SGPLEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L   +Q K  AV++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LNDLQGILVMAAQEKQPAVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLSQEQIQDLAE 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANN 209
           F +KAS+G LI P  SIG +LLQQAAI+AS H+ +VEI+E   N + D PS  A + A  
Sbjct: 123 FAEKASIGTLIIPNFSIGMVLLQQAAIAASKHFDHVEIIELHHNQKADAPSGTAIKTAQM 182

Query: 210 LSNLGQIYNREDISTDVK---ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIK 266
           LS LG+ YN  ++    K   ARG  L E+G+R+HS+ LPGL +   V F  PG++Y+++
Sbjct: 183 LSELGKTYNVPNVEETEKIEGARG-CLAEEGIRIHSVRLPGLIAHQEVIFGGPGQIYTLR 241

Query: 267 HDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           HD TD    MPG++LAIRKV  L  L+YGLEK L
Sbjct: 242 HDTTDRSCYMPGVLLAIRKVQSLTKLIYGLEKIL 275

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P72642|DAPB_SYNY3 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dapB PE=3 SV=1

 Score =  214 bits (545), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 119/274 (43%), Positives = 172/274 (62%), Gaps = 8/274 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I V++NGA  ++GR  + AV +A  +++ GA+D +    G+DIG V  +  PLE+PV
Sbjct: 4   QDLIPVVVNGAAGKMGREVIKAVAQAPDLQLVGAVDHNPSLQGQDIGEVVGIA-PLEVPV 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  VL   +Q K + V++DFT  S VYDNV+ A A+G+R VV    +  + +  L  
Sbjct: 63  LADLQSVLVLATQEKIQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGD 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANN 209
           F +KAS GCLIAP  +IG +L+QQAA+ A  ++ +VEI+E   N + D PS  A + A  
Sbjct: 123 FAEKASTGCLIAPNFAIGVLLMQQAAVQACQYFDHVEIIELHHNQKADAPSGTAIKTAQM 182

Query: 210 LSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIK 266
           L+ +G+ +N    E+  T   A+G  LG   + +HS+ LPGL +   V F  PG++Y+I+
Sbjct: 183 LAEMGKTFNPPAVEEKETIAGAKGG-LGPGQIPIHSIRLPGLIAHQEVLFGSPGQLYTIR 241

Query: 267 HDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           HD TD    MPG++L IRKVV LK LVYGLEK L
Sbjct: 242 HDTTDRACYMPGVLLGIRKVVELKGLVYGLEKLL 275

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B2J0A9|DAPB_NOSP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapB PE=3 SV=1

 Score =  213 bits (542), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 118/277 (42%), Positives = 175/277 (63%), Gaps = 11/277 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---GEDIGMVCDMEQPLEIP 89
           Q+ I VI+NGA  ++GR  + AV +A  + + GAID HS+    +D G +  + +PLE+P
Sbjct: 4   QAPIPVIVNGAAGKMGREVIKAVAQAPDLNLVGAID-HSLEHQDKDAGELAGLSEPLEVP 62

Query: 90  VMSDLTMVLGSISQSKAR--AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 147
           + + L  +LG ++  +     V++DFT   +VYDN++ A A+G+R VV    +  E +  
Sbjct: 63  ITNQLEPMLGYVAGDRQSPPGVIVDFTHPDSVYDNIRSAIAYGIRPVVGTTGLSPEQIQD 122

Query: 148 LSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQI 206
           L+ F DKAS GCLI P  SIG +LLQQAAI+AS ++ +VEI+E   N + D PS  A Q 
Sbjct: 123 LADFADKASTGCLIIPNFSIGMVLLQQAAIAASKYFDHVEIIELHHNQKADAPSGTAIQT 182

Query: 207 ANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVY 263
           A  L  LG+ +N    E+      ARG +  ++G+R+HS+ LPGL +   V F   G++Y
Sbjct: 183 AQLLGELGKTFNPALVEETEKLPGARGSI-ADEGIRIHSVRLPGLIAHQEVIFGAAGQIY 241

Query: 264 SIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           +++HD +D    MPG++LAIRKV+ LK+LVYGLEK L
Sbjct: 242 TLRHDTSDRACYMPGVLLAIRKVLALKSLVYGLEKIL 278

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7KBV6|DAPB_CYAP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7424) GN=dapB PE=3 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/273 (42%), Positives = 167/273 (61%), Gaps = 6/273 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           +S I V++NGA  ++G+  + AV++A  M + GA+D +    GED G V     P+E+P+
Sbjct: 4   ESPIPVVVNGAAGKMGKEVIKAVSQAEDMMLVGAVDLNPKYRGEDAGEVAGC-GPVEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           + DL  VL   +Q K + V++DFT    VYDN++ A A+G+R VV    +  E +  L  
Sbjct: 63  LDDLQSVLVLATQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGE 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANN 209
           F +KAS GCLI P  SIG ILLQQAA+ AS ++ +VEI+E   N + D PS  A + A  
Sbjct: 123 FAEKASTGCLIVPNFSIGMILLQQAAVQASQYFDHVEIIELHHNQKADAPSGTAIKTAEM 182

Query: 210 LSNLGQIYNREDISTDVKARGQVLG--EDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH 267
           LS LG+ +N   +      RG   G  E+ + +HS+ LPG  +   V F   G++Y+++H
Sbjct: 183 LSELGKSFNPAKVEETETIRGSRGGITEENIHIHSVRLPGFIAHQEVIFGSTGQIYTLRH 242

Query: 268 DITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           D TD  S MPG++LAIRKV  LK+L+YGLEK L
Sbjct: 243 DTTDRSSFMPGVLLAIRKVTQLKSLIYGLEKIL 275

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7JW41|DAPB_CYAP8 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 8801) GN=dapB PE=3 SV=1

 Score =  204 bits (520), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 115/273 (42%), Positives = 171/273 (62%), Gaps = 8/273 (2%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM 91
           S I V++NGA  ++GR  V AV +A  M + GA+D +    G+D+G V      LE+P++
Sbjct: 5   SLIPVVVNGAAGKMGREVVKAVAQAEDMMLVGAVDYNPNYRGQDVGEVAGC-GALEVPIV 63

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL  +L   +Q K + V++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ F
Sbjct: 64  DDLQSILVLATQEKIQGVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLTEEQLKDLADF 123

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNL 210
            DKAS GCL+ P  SIG +LLQQAA+ AS ++ +VEI+E   N + D PS  A + A  L
Sbjct: 124 ADKASTGCLVIPNFSIGMVLLQQAAVQASQYFDHVEIIELHHNQKADAPSGTAIKTAQML 183

Query: 211 SNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH 267
           S LG+ YN    ++  T   A+G ++ +D +R+HS+ LPGL +   V F   GE+Y+++H
Sbjct: 184 SGLGKTYNPPMVKETETIAGAKGALV-DDNIRIHSVRLPGLIAHQEVIFGAKGEIYTLRH 242

Query: 268 DITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           D +D    M G++L+IRKV  L++LVYGLEK L
Sbjct: 243 DTSDRSCYMAGVLLSIRKVTQLQSLVYGLEKIL 275

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
224136862	300	predicted protein [Populus trichocarpa]	1.0	1.0	0.823	1e-142
225455455	302	PREDICTED: putative dihydrodipicolinate	0.996	0.990	0.81	1e-139
297741105	303	unnamed protein product [Vitis vinifera]	0.996	0.986	0.807	1e-138
255539549	300	dihydrodipicolinate reductase, putative	1.0	1.0	0.78	1e-136
449446063	300	PREDICTED: putative dihydrodipicolinate	1.0	1.0	0.78	1e-135
356575925	301	PREDICTED: putative dihydrodipicolinate	0.996	0.993	0.791	1e-134
357444055	302	Dihydrodipicolinate reductase [Medicago	0.996	0.990	0.782	1e-133
297792539	298	dihydrodipicolinate reductase family pro	0.986	0.993	0.781	1e-132
15242275	298	putative dihydrodipicolinate reductase 3	0.986	0.993	0.774	1e-132
356535900	301	PREDICTED: putative dihydrodipicolinate	0.996	0.993	0.768	1e-132

>gi|224136862|ref|XP_002322434.1| predicted protein [Populus trichocarpa] gi|222869430|gb|EEF06561.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/300 (82%), Positives = 268/300 (89%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C FH  +H +S+NV  + FISCS  P QSNIKV+INGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHFHFTVHKVSKNVITRPFISCSMQPSQSNIKVVINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG +CDME+PLEIP+++DLTMVLGSISQSK   VV+DFTD STVY
Sbjct: 61  MEVAGAVDSHFVGEDIGKLCDMEEPLEIPIINDLTMVLGSISQSKETGVVVDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           DNVKQATAFGMRSVVYVP I+L++V ALSAFCDKASMGCLIAPTLSIGSILLQQAAI+AS
Sbjct: 121 DNVKQATAFGMRSVVYVPRIKLDSVGALSAFCDKASMGCLIAPTLSIGSILLQQAAITAS 180

Query: 181 FHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRV 240
           FHY N EIVES+ N  DFPS DA QI+ NLSNLGQIYNREDISTDV ARGQV+GEDGVRV
Sbjct: 181 FHYNNAEIVESKANPIDFPSMDAIQISKNLSNLGQIYNREDISTDVVARGQVIGEDGVRV 240

Query: 241 HSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           HSMVLPGLPSSTTVYFS PGEVYSIKHDITDVQSLMPGL+LAIRKV+ LKNLVYGLEKFL
Sbjct: 241 HSMVLPGLPSSTTVYFSGPGEVYSIKHDITDVQSLMPGLLLAIRKVIRLKNLVYGLEKFL 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455455|ref|XP_002274702.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic [Vitis vinifera] gi|147816661|emb|CAN68386.1| hypothetical protein VITISV_012454 [Vitis vinifera]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/300 (81%), Positives = 267/300 (89%), Gaps = 1/300 (0%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCSTN-PPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSISQSKA  VV+DFTD STVY
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQSKATGVVVDFTDPSTVY 122

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           +NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 123 ENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASMGCLVAPTLSIGSILLQQAAISAS 182

Query: 181 FHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRV 240
           FHY NVEIVESRP   DFPSPDA QIANNLSNLGQIYNREDISTD+ ARGQVLGEDG+RV
Sbjct: 183 FHYNNVEIVESRPTPTDFPSPDAIQIANNLSNLGQIYNREDISTDILARGQVLGEDGIRV 242

Query: 241 HSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           HS+VLPGLPSSTTVYFS PGEVYS+KHDITDV+ LMPGLILAIRKVV LKNLVYGLEKFL
Sbjct: 243 HSLVLPGLPSSTTVYFSGPGEVYSLKHDITDVRCLMPGLILAIRKVVRLKNLVYGLEKFL 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741105|emb|CBI31836.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/301 (80%), Positives = 267/301 (88%), Gaps = 2/301 (0%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCSTN-PPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ-SKARAVVIDFTDASTV 119
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSISQ SKA  VV+DFTD STV
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQQSKATGVVVDFTDPSTV 122

Query: 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179
           Y+NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASMGCL+APTLSIGSILLQQAAISA
Sbjct: 123 YENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASMGCLVAPTLSIGSILLQQAAISA 182

Query: 180 SFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVR 239
           SFHY NVEIVESRP   DFPSPDA QIANNLSNLGQIYNREDISTD+ ARGQVLGEDG+R
Sbjct: 183 SFHYNNVEIVESRPTPTDFPSPDAIQIANNLSNLGQIYNREDISTDILARGQVLGEDGIR 242

Query: 240 VHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKF 299
           VHS+VLPGLPSSTTVYFS PGEVYS+KHDITDV+ LMPGLILAIRKVV LKNLVYGLEKF
Sbjct: 243 VHSLVLPGLPSSTTVYFSGPGEVYSLKHDITDVRCLMPGLILAIRKVVRLKNLVYGLEKF 302

Query: 300 L 300
           L
Sbjct: 303 L 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539549|ref|XP_002510839.1| dihydrodipicolinate reductase, putative [Ricinus communis] gi|223549954|gb|EEF51441.1| dihydrodipicolinate reductase, putative [Ricinus communis]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/300 (78%), Positives = 262/300 (87%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C     +     NVKAK FI CS  P +SNIKV++NGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHLQFTVSKGCSNVKAKPFIFCSAQPAKSNIKVVVNGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+D+H VGED+G++CDME+PLEIPV++DLTMVLGSISQSK   VVIDFTD STVY
Sbjct: 61  MEVAGAVDTHFVGEDVGLLCDMEEPLEIPVINDLTMVLGSISQSKETGVVIDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           DNVKQATAFGM+S+VYVP I+++T++ALSA C+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 121 DNVKQATAFGMKSIVYVPRIKVDTIAALSALCEKASMGCLVAPTLSIGSILLQQAAISAS 180

Query: 181 FHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRV 240
           FHY NVEIVESR +  D PS DA QIA NLSNLGQIYN+ED+STDV ARGQVLGEDGVRV
Sbjct: 181 FHYNNVEIVESRAHGADLPSADANQIAKNLSNLGQIYNKEDLSTDVLARGQVLGEDGVRV 240

Query: 241 HSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           HS+VLPGLPSSTTVYFS+PGEVYSIKHDITDVQ LM GL+LAIRKV+ LKNLVYGLEK L
Sbjct: 241 HSLVLPGLPSSTTVYFSKPGEVYSIKHDITDVQCLMSGLLLAIRKVIRLKNLVYGLEKLL 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446063|ref|XP_004140791.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Cucumis sativus]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/300 (78%), Positives = 263/300 (87%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MATLGCQF   ++  S+  +    I CS  P Q NIKVIINGA KEIGRAAVIAVTKARG
Sbjct: 1   MATLGCQFPFTVYKNSKKKRPGSSILCSVQPSQGNIKVIINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG VCDME+PLE+P+++DLTMVLGSISQSK   VV+DFT+ S VY
Sbjct: 61  MEVAGAVDSHCVGEDIGKVCDMEEPLELPILNDLTMVLGSISQSKETGVVVDFTEPSKVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           +NVKQATAFGMRSVVYVP ++++TV+ALS FC+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 121 ENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASMGCLVAPTLSIGSILLQQAAISAS 180

Query: 181 FHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRV 240
           FHY N+EIVES  +A+D PS DA QIANNLSNLGQIYNREDISTDV ARGQV+GEDGVRV
Sbjct: 181 FHYSNIEIVESTAHAQDLPSSDAAQIANNLSNLGQIYNREDISTDVLARGQVIGEDGVRV 240

Query: 241 HSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           HS+VLPGLPSST VYFSRPGEVY++KHDI +VQ LMPGL+LAIRKVV LKNLVYGLEKFL
Sbjct: 241 HSLVLPGLPSSTNVYFSRPGEVYTLKHDIINVQCLMPGLLLAIRKVVRLKNLVYGLEKFL 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575925|ref|XP_003556086.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Glycine max]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/302 (79%), Positives = 266/302 (88%), Gaps = 3/302 (0%)

Query: 1   MATLGCQFHCRMHHISQNV--KAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA+L CQFH      S+NV  + KRFI CS  P Q+NIKV+INGA KEIGRAAV+AVTKA
Sbjct: 1   MASLSCQFHSTSLLNSKNVNRRRKRFIFCSAQPTQNNIKVVINGATKEIGRAAVVAVTKA 60

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGMEVAGA+D+  VGEDIG +C ME+PLEIP+++DLTM+LGSISQSKA  VV+DFTD S+
Sbjct: 61  RGMEVAGAVDTCHVGEDIGKICGMEEPLEIPIINDLTMILGSISQSKAAGVVVDFTDPSS 120

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFCDKASMG L+APTLSIGSILLQQAAIS
Sbjct: 121 VYDNVKQATAFGMKSVVYVPQIKLDTVAALSAFCDKASMGVLVAPTLSIGSILLQQAAIS 180

Query: 179 ASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGV 238
           ASFHY NVEIVESR NA D PS DA QIANNLSNLGQIYNRED STDV ARGQVLG DG+
Sbjct: 181 ASFHYSNVEIVESRANANDLPSADANQIANNLSNLGQIYNREDPSTDVLARGQVLG-DGI 239

Query: 239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEK 298
           RVHSMVLPG+PSSTTV+FS PGEVYSIKHDITDV+ LMPGL+LAIRKVV LKNLVYGLEK
Sbjct: 240 RVHSMVLPGIPSSTTVHFSGPGEVYSIKHDITDVKCLMPGLLLAIRKVVRLKNLVYGLEK 299

Query: 299 FL 300
           F+
Sbjct: 300 FI 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444055|ref|XP_003592305.1| Dihydrodipicolinate reductase [Medicago truncatula] gi|355481353|gb|AES62556.1| Dihydrodipicolinate reductase [Medicago truncatula]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 265/303 (87%), Gaps = 4/303 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR---FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTK 57
           MA L CQFH   +  SQ VK++     ISCS  P QSNIKV+INGA KEIGRAAV+AVTK
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117
           ARGMEVAGAID+  VGEDIG +C M++PLEIP+++DLTMVLGSISQSKA AVV+DFTD S
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 177
            VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFC+KASMG L+APTLSIGSILLQQAAI
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAI 180

Query: 178 SASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDG 237
           SASFHY+NVEIVES+ NA D PS +A QIANNLSNLGQIYNRED STDV ARGQVLG DG
Sbjct: 181 SASFHYRNVEIVESKANANDLPSAEANQIANNLSNLGQIYNREDSSTDVLARGQVLG-DG 239

Query: 238 VRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLE 297
           +RVHS+VLPGLPSSTTV+FS  GE+Y+IKHDITDVQ LMPGL+LAIRKVV LKNLVYGLE
Sbjct: 240 IRVHSLVLPGLPSSTTVHFSGLGEIYTIKHDITDVQCLMPGLLLAIRKVVRLKNLVYGLE 299

Query: 298 KFL 300
           KFL
Sbjct: 300 KFL 302

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792539|ref|XP_002864154.1| dihydrodipicolinate reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297309989|gb|EFH40413.1| dihydrodipicolinate reductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/302 (78%), Positives = 264/302 (87%), Gaps = 6/302 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAVIAVTKA
Sbjct: 1   MAAVNCHFF----KLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVIAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+  VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNRFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDLST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGV 238
           ASFHY NVE+VESRPNA DFPSP+A QIANN+SNLGQIYNRED STDVKARGQV+GEDGV
Sbjct: 177 ASFHYNNVELVESRPNAADFPSPEAIQIANNISNLGQIYNREDSSTDVKARGQVIGEDGV 236

Query: 239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEK 298
           RVHSMVLPGLPSST VYFS PG+VY++KHDI DV+SLMPGL+LAIRKVV LKNLVYGLEK
Sbjct: 237 RVHSMVLPGLPSSTQVYFSSPGDVYTLKHDIIDVRSLMPGLLLAIRKVVRLKNLVYGLEK 296

Query: 299 FL 300
           FL
Sbjct: 297 FL 298

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242275|ref|NP_200023.1| putative dihydrodipicolinate reductase 3 [Arabidopsis thaliana] gi|75262543|sp|Q9FJ82.1|DAPB3_ARATH RecName: Full=Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic; Short=HTPA reductase 3; Flags: Precursor gi|10177745|dbj|BAB11058.1| dihydrodipicolinate reductase-like protein [Arabidopsis thaliana] gi|124301156|gb|ABN04830.1| At5g52100 [Arabidopsis thaliana] gi|332008788|gb|AED96171.1| putative dihydrodipicolinate reductase 3 [Arabidopsis thaliana]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/302 (77%), Positives = 264/302 (87%), Gaps = 6/302 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGV 238
           ASFHY NVE+VESRPNA D PSP+A QIANN+SNLGQIYNRED STDV+ARGQV+GEDGV
Sbjct: 177 ASFHYNNVELVESRPNAADLPSPEAIQIANNISNLGQIYNREDSSTDVQARGQVIGEDGV 236

Query: 239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEK 298
           RVHSMVLPGLPSST VYFS PG+VY++KHDI DV+SLMPGL+LAIRKVV LKNLVYGLEK
Sbjct: 237 RVHSMVLPGLPSSTQVYFSSPGDVYTVKHDIIDVRSLMPGLLLAIRKVVRLKNLVYGLEK 296

Query: 299 FL 300
           FL
Sbjct: 297 FL 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535900|ref|XP_003536480.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Glycine max]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/302 (76%), Positives = 264/302 (87%), Gaps = 3/302 (0%)

Query: 1   MATLGCQFHCR--MHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA+L CQ H    ++  + N + KR ISCS  P Q+NIKV+INGA KEIG+AAV+AVTKA
Sbjct: 1   MASLSCQVHSTNLLNSKNANSRRKRLISCSAQPTQNNIKVVINGATKEIGKAAVVAVTKA 60

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGMEVAGA+D+  +GEDIG +C ME+ LEIP+++DLTM+LGSISQSKA  VV+DFTD S+
Sbjct: 61  RGMEVAGAVDTCHIGEDIGKICGMEELLEIPIINDLTMILGSISQSKAAGVVVDFTDPSS 120

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VYDNVKQATAFGM+S+VYVP I+L+TV+ALSAFC+KASMG L+APTLSIGSILLQQAAIS
Sbjct: 121 VYDNVKQATAFGMKSIVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAIS 180

Query: 179 ASFHYKNVEIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGV 238
           ASFHY NVEIVESR NA D PS DA QIANNLSNLGQIYNRED STDV ARGQVLG DG+
Sbjct: 181 ASFHYSNVEIVESRANANDLPSADANQIANNLSNLGQIYNREDPSTDVLARGQVLG-DGI 239

Query: 239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEK 298
           RVHSMVLPGLPSSTTV+FS PGEVYSIKHDITDV+ LMPGL+LAIRKVV LKNLVYGLEK
Sbjct: 240 RVHSMVLPGLPSSTTVHFSGPGEVYSIKHDITDVKCLMPGLLLAIRKVVRLKNLVYGLEK 299

Query: 299 FL 300
           F+
Sbjct: 300 FI 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2173043	298	CRR1 "chlororespiration reduct	0.973	0.979	0.785	1.8e-119
TIGR_CMR|CBU_1709	239	CBU_1709 "dihydrodipicolinate	0.696	0.874	0.337	2.9e-29
TIGR_CMR|DET_0971	263	DET_0971 "dihydrodipicolinate	0.85	0.969	0.291	8.4e-26
TIGR_CMR|CHY_1151	263	CHY_1151 "dihydrodipicolinate	0.856	0.977	0.284	7.6e-25
UNIPROTKB|P63895	255	dapB "4-hydroxy-tetrahydrodipi	0.83	0.976	0.313	2.9e-23
TIGR_CMR|BA_1555	266	BA_1555 "dihydrodipicolinate r	0.856	0.966	0.285	7.8e-23
UNIPROTKB|P72024	245	dapB "4-hydroxy-tetrahydrodipi	0.633	0.775	0.319	2.2e-18
TIGR_CMR|GSU_0160	266	GSU_0160 "dihydrodipicolinate	0.83	0.936	0.242	7e-06
TAIR|locus:2051854	347	AT2G44040 [Arabidopsis thalian	0.726	0.628	0.252	1.3e-05
TIGR_CMR|SO_1140	270	SO_1140 "dihydrodipicolinate r	0.816	0.907	0.250	6.2e-05

TAIR|locus:2173043 CRR1 "chlororespiration reduction 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
 Identities = 231/294 (78%), Positives = 261/294 (88%)

Query:     9 HCRMHHISQNVKAKR-FISCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66
             +C    +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKARGME+AGA
Sbjct:     5 NCHFFQLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKARGMELAGA 64

Query:    67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA 126
             +D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD STVY+NVKQA
Sbjct:    65 VDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPSTVYENVKQA 124

Query:   127 TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV 186
             TAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I ASFHY NV
Sbjct:   125 TAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIMASFHYNNV 184

Query:   187 EIVESRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLP 246
             E+VESRPNA D PSP+A QIANN+SNLGQIYNRED STDV+ARGQV+GEDGVRVHSMVLP
Sbjct:   185 ELVESRPNAADLPSPEAIQIANNISNLGQIYNREDSSTDVQARGQVIGEDGVRVHSMVLP 244

Query:   247 GLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
             GLPSST VYFS PG+VY++KHDI DV+SLMPGL+LAIRKVV LKNLVYGLEKFL
Sbjct:   245 GLPSSTQVYFSSPGDVYTVKHDIIDVRSLMPGLLLAIRKVVRLKNLVYGLEKFL 298

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IEA;IGI;ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=IMP

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|CBU_1709 CBU_1709 "dihydrodipicolinate reductase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 299 (110.3 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 75/222 (33%), Positives = 120/222 (54%)

Query:    88 IPVMSDLTMVLGSISQSK-ARA-------VVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139
             I   SDL +V G+  Q   A+        VVIDFT   +V+ N +     G R V+    
Sbjct:    22 ITAQSDLELVSGTGRQDDLAKTIQTTHADVVIDFTTPQSVFHNAEIIIQSGARPVIGTTG 81

Query:   140 IQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DF 198
             + LE ++ L   C    +G ++AP  S+G++L+ + A  A+ ++ +VEI+E   + + D 
Sbjct:    82 LTLEQIALLDKQCRNKKLGAIVAPNFSVGAVLMMKYAKEAAHYFPDVEIIEMHHSQKIDA 141

Query:   199 PSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSR 258
             PS  A + A  +  +    +++D     +ARG++  ++G+ +HS+ LPGL S  +V F  
Sbjct:   142 PSGTAIKTAQMIGEMRS--SKKDEPFKDRARGEI--KNGIPIHSIRLPGLFSHQSVIFGS 197

Query:   259 PGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
              GE  +I+HD  D    MPG+ +A RKV+ L  LVYGLE  L
Sbjct:   198 NGETLTIRHDGMDRNCTMPGIFMACRKVMELDYLVYGLENLL 239

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|DET_0971 DET_0971 "dihydrodipicolinate reductase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 78/268 (29%), Positives = 136/268 (50%)

Query:    36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
             IKV+++GA  ++G+  +  + +   +   GA+D  +    + +    +    IP  +DL+
Sbjct:     4 IKVVVHGASGKMGQEVLKTLCQENNLLPVGAVDIRAKSPALPLP---DGSGSIPYSADLS 60

Query:    96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155
              VL   SQ+K   V++DFT A      ++ A A  +  V+       E +S +       
Sbjct:    61 SVL---SQTKPD-VMVDFTIAKASMPAIRIAAAHKVNLVIGTTGFSPEEISEIEQLAKTN 116

Query:   156 SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLSNL-- 213
              +G ++AP  ++G+I++   A  AS    + E++E   + +   SP  T +A   + L  
Sbjct:   117 DIGIIVAPNFALGAIIMVHLAQEASRFLASAEVIELHHDKK-LDSPSGTALATAAAMLKT 175

Query:   214 -GQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDV 272
              G+ +N+        ARGQ    DG+RVHS+ LPGL +   V F   G+  +I+HD    
Sbjct:   176 RGEAFNKPAKENMSDARGQE--HDGIRVHSVRLPGLLAHQEVIFGAAGQSLTIRHDAFSR 233

Query:   273 QSLMPGLILAIRKVVHLKNLVYGLEKFL 300
             +  MPG++LAI+++V  K  V+GL+K L
Sbjct:   234 ECYMPGVVLAIKEIVQTKGFVFGLDKLL 261

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|CHY_1151 CHY_1151 "dihydrodipicolinate reductase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 76/267 (28%), Positives = 141/267 (52%)

Query:    37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
             ++++ GA  ++GR     +      E+ G +D  +VG+D G +  + + L   V  +L  
Sbjct:     3 RIVMLGACGKMGREISKNLLMHSEHELVGFVDVVNVGQDFGEILGISR-LGKTVEDNLKE 61

Query:    97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156
             V+   +      +V+DF+ AS  + N+  A    +R V        E +  +    +  +
Sbjct:    62 VILKTNPE----IVLDFSRASGAFTNILIALENKVRVVSGTTGFSQEQIKKIEDVSNANN 117

Query:   157 MGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQ 215
             +GC+IAP  SIG++LL + A  A+ ++ +VEI+E   N + D PS  A + A  LS++ +
Sbjct:   118 LGCIIAPNFSIGALLLMKLAQMAAKYFSHVEIIEYHHNLKVDAPSGTAIKTAELLSSIRE 177

Query:   216 IYNRED-ISTDVKARGQVLGE-DGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQ 273
               N+   I  + K  G   G+  G+++HS+ LPGL +   V F   G+  +++HD+   +
Sbjct:   178 --NQPSAIQEEEKIPGSRGGDYRGIKIHSVRLPGLVAHQEVIFGGRGQSLTLRHDVYSRE 235

Query:   274 SLMPGLILAIRKVVHLKNLVYGLEKFL 300
             S + G++ A++KV+ L   V+GL++ L
Sbjct:   236 SYLDGILFALKKVLELDRFVFGLDELL 262

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P63895 dapB "4-hydroxy-tetrahydrodipicolinate reductase" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 85/271 (31%), Positives = 130/271 (47%)

Query:    35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSD 93
             +I+VII G   ++G+AA   V     +++   +D   S  E  G          IPV  D
Sbjct:     2 SIRVIIAGFKGKMGQAACQMVLTDPDLDLVAVLDPFESESEWQG----------IPVFKD 51

Query:    94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
                + G  +      V +DFT  +  Y+N + A   G   VV       E ++ L  F  
Sbjct:    52 KADLAGFEAD-----VWVDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSR 106

Query:   154 KASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSN 212
                +G LIAP  ++G++LL Q A  A+ ++ NVEI+E      +D PS  A + A  ++ 
Sbjct:   107 AQDLGGLIAPNFALGAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAE 166

Query:   213 LGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDI 269
             + +   +   ++      ARG     DG+R+HS+ LPGL +   V F   GE  +++HD 
Sbjct:   167 VRESIQQGAADEEELIAGARGADF--DGMRIHSVRLPGLVAHQEVIFGNQGEGLTLRHDS 224

Query:   270 TDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
              D  S M G+ L I++VV    LVYGLE  L
Sbjct:   225 YDRISFMTGVNLGIKEVVKRHELVYGLEHLL 255

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|BA_1555 BA_1555 "dihydrodipicolinate reductase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 77/270 (28%), Positives = 136/270 (50%)

Query:    36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
             +KVII G    +G  AV+ + +     +  A+D    GE I  +  M   L+  + +DL 
Sbjct:     4 MKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPA-LDATIYADLH 62

Query:    96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155
               L  +       V++D T       +V  A   G+RSV+       E +  L+    + 
Sbjct:    63 TCLEEVEAD----VLLDLTTPEVGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEK 118

Query:   156 SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQ----IANNL 210
             ++G +IAP  +IG++L+ + +  A+ ++++VE++E   + + D PS  A +    I  N 
Sbjct:   119 AVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKLDAPSGTAVKTVELIRQNR 178

Query:   211 SNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDIT 270
              +  Q +  E +     ARG  +  DG+ +HS+ LPGL +   V F   G++ +++HD  
Sbjct:   179 ESKQQGHPNE-VEQLEGARGANV--DGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSF 235

Query:   271 DVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
             +  S M G+ L+I  V++L +LVYGLE  +
Sbjct:   236 NRASFMSGVKLSIETVMNLDHLVYGLENII 265

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P72024 dapB "4-hydroxy-tetrahydrodipicolinate reductase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 63/197 (31%), Positives = 98/197 (49%)

Query:   109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC-DKASMGCLIAPTLSI 167
             VVIDFT    V  N++     G+ +VV       E    + ++   K +   LIAP  +I
Sbjct:    48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107

Query:   168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
             G++L    A  A+  + + E++E   P+  D PS  A + A  ++    G   N +  ST
Sbjct:   108 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 167

Query:   225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
              +  ARG  +  DG+ VH++ L GL +   V F   GE  +I+HD  D  S +PG++LA+
Sbjct:   168 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 225

Query:   284 RKVVHLKNLVYGLEKFL 300
             R++     L  GLE  L
Sbjct:   226 RRIAERPGLTVGLEPLL 242

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IDA

GO:0019877 "diaminopimelate biosynthetic process" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

GO:0051289 "protein homotetramerization" evidence=IPI

GO:0070402 "NADPH binding" evidence=IDA

GO:0070404 "NADH binding" evidence=IDA

TIGR_CMR|GSU_0160 GSU_0160 "dihydrodipicolinate reductase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 128 (50.1 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 67/276 (24%), Positives = 124/276 (44%)

Query:    37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID--SHS-VGEDIGMVCDMEQPLEIPVMSD 93
             K+ + GA   +G+  ++A  +A G  ++GA++   H  VG+D G++      L + +  D
Sbjct:     3 KIAVCGAAGRMGQRIIVAAREA-GCTISGALERPGHEMVGQDAGLIAGCGA-LGVAISDD 60

Query:    94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
             L  V+          V+IDFT       N+ +  A   +S+V           AL+    
Sbjct:    61 LNAVVEGCD------VLIDFTTPKVSLKNL-EVCALKKKSIVIGSTGFTPEERALAVELA 113

Query:   154 KASMGCLIAPTLSIG-SI---LLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIAN 208
             +  +  ++AP +S+G ++   +L+  A +    + +VEIVE   N + D PS  A ++  
Sbjct:   114 R-EIPAVLAPNMSVGVNVCFKILKDVAKTLGDDF-DVEIVELHHNKKKDAPSGTAVRMGE 171

Query:   209 NLSN-LGQIYNREDISTDVKARGQVLGE---DGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
              ++  LG+ YN+  ++T    R  + GE   + + + ++    +    TVYF   GE   
Sbjct:   172 VVAEALGRDYNK--VAT--YHREGICGERTKEEIGMQTVRGGDIVGEHTVYFIGMGERIE 227

Query:   265 IKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
             I H          G + A + VV     +Y ++  L
Sbjct:   228 ISHRAMTRDMFSRGSVRAAQWVVGKAPGLYDMQDVL 263

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TAIR|locus:2051854 AT2G44040 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 60/238 (25%), Positives = 107/238 (44%)

Query:    32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VCDMEQPLEI 88
             P + I +++NG   ++G+A + A   A G+ +   I   S GED G    VC  E  +  
Sbjct:    69 PGNGISIMVNGCSGKMGKAVIKAADSA-GVNIV-PISFGSAGED-GQRVEVCGKEITVHG 125

Query:    89 PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP---HIQL-ET 144
             P  ++   VL S+ +     +V+D+T  S V DN +  +  G+  V+        +L ET
Sbjct:   126 P--TEREKVLSSVFEKHPELIVVDYTIPSAVNDNAELYSKVGVPFVMGTTGGDRNKLYET 183

Query:   145 VSALSAFCD-KASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDA 203
             V     +      MG  +   L+   I+ +Q     +F   +++++ES   ++   S  A
Sbjct:   184 VEEAKIYAVISPQMGKQVVAFLAAMEIMAEQ--FPGAFSGYSLDVMESHQASKLDASGTA 241

Query:   204 TQIANNLSNLGQIYNREDIST--DVKARGQVLG--EDGVRVHSMVLPGLPS-STTVYF 256
               + +    LG  Y+ + I    D K + +++G  E+ +  H+  L  L S   TV F
Sbjct:   242 KAVISCFQELGVSYDMDQIQLIRDPKQQVEMVGVPEEHISGHAFHLYHLTSPDETVSF 299

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IEA;IGI;ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

TIGR_CMR|SO_1140 SO_1140 "dihydrodipicolinate reductase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 120 (47.3 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 71/283 (25%), Positives = 124/283 (43%)

Query:    36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPVMS 92
             ++V I GA   +GR  + +      + +  AI+   S  VG D G +  + + L I +M 
Sbjct:     5 VRVAIVGAGGRMGRTLIESAYHQEHIRLGAAIERPGSSLVGVDAGELAGVGK-LNIMIMD 63

Query:    93 DLTMVLGSISQSKARAVVIDFT--DASTVYDN--VKQATAFGMRSVVYVPHIQLETVSAL 148
              L              V+IDFT  +AS V+ +  V+   A  + +  +  H Q E ++A 
Sbjct:    64 SLDYATDDFD------VLIDFTAPEASIVHLDWCVRHKKAMVIGTTGF-NHAQKEQINA- 115

Query:   149 SAFCDKASMGCLIAPTLSIGSIL---LQQAAISASFHYKNVEIVESRPN-ARDFPSPDAT 204
               F ++  +  ++AP +S+G  L   L + A      Y ++EI+E      +D PS  A 
Sbjct:   116 --FAEQTPV--VMAPNMSVGVNLMWKLLELAAEVMGDYTDIEIIEGHHRYKKDAPSGTAL 171

Query:   205 QIANNLSN-LGQ------IYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFS 257
             ++   ++  LG+      +Y RE I T  + R + +G   VR   +V        T  F+
Sbjct:   172 KMGEVIAKTLGRDLEKCAVYGREGI-TGERDR-ETIGFATVRAGDLV-----GEHTAMFA 224

Query:   258 RPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
               GE   I H  +   +   G + A   +V  K  +Y +++ L
Sbjct:   225 DIGERLEITHKASSRMTFANGAMRAAHWLVEQKPGLYDMQQVL 267

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2RJL2	DAPB_MOOTA	1, ., 3, ., 1, ., 2, 6	0.3150	0.8566	0.9625	yes	no
Q7VC38	DAPB_PROMA	1, ., 3, ., 1, ., 2, 6	0.3613	0.88	0.9565	yes	no
Q7U807	DAPB_SYNPX	1, ., 3, ., 1, ., 2, 6	0.3563	0.8833	0.9566	yes	no
Q3MFY8	DAPB_ANAVT	1, ., 3, ., 1, ., 2, 6	0.4311	0.89	0.9604	yes	no
Q5N0M4	DAPB_SYNP6	1, ., 3, ., 1, ., 2, 6	0.4074	0.8733	0.9597	yes	no
A3CMU3	DAPB_STRSV	1, ., 3, ., 1, ., 2, 6	0.3333	0.8233	0.9686	yes	no
B7JW41	DAPB_CYAP8	1, ., 3, ., 1, ., 2, 6	0.4212	0.8833	0.9636	yes	no
Q31LA3	DAPB_SYNE7	1, ., 3, ., 1, ., 2, 6	0.4095	0.8766	0.9633	yes	no
Q24UK0	DAPB_DESHY	1, ., 3, ., 1, ., 2, 6	0.3122	0.8766	0.9850	yes	no
B7KBV6	DAPB_CYAP7	1, ., 3, ., 1, ., 2, 6	0.4249	0.89	0.9709	yes	no
A5FQT3	DAPB_DEHSB	1, ., 3, ., 1, ., 2, 6	0.3071	0.8533	0.9733	yes	no
Q8YU19	DAPB_NOSS1	1, ., 3, ., 1, ., 2, 6	0.4347	0.89	0.9604	yes	no
B2J0A9	DAPB_NOSP7	1, ., 3, ., 1, ., 2, 6	0.4259	0.8866	0.9568	yes	no
B1XIL4	DAPB_SYNP2	1, ., 3, ., 1, ., 2, 6	0.3992	0.8833	0.9636	yes	no
Q3AIK8	DAPB_SYNSC	1, ., 3, ., 1, ., 2, 6	0.3503	0.88	0.9530	yes	no
Q8DHH2	DAPB_THEEB	1, ., 3, ., 1, ., 2, 6	0.4115	0.8966	0.9746	yes	no
Q46KV7	DAPB_PROMT	1, ., 3, ., 1, ., 2, 6	0.3321	0.8833	0.9397	yes	no
Q9FJ82	DAPB3_ARATH	1, ., 3, ., 1, ., 2, 6	0.7748	0.9866	0.9932	yes	no
Q834S6	DAPB_ENTFA	1, ., 3, ., 1, ., 2, 6	0.3234	0.8466	0.9806	yes	no
B5YEB2	DAPB_DICT6	1, ., 3, ., 1, ., 2, 6	0.3210	0.8533	0.9552	yes	no
Q8DUL9	DAPB_STRMU	1, ., 3, ., 1, ., 2, 6	0.3210	0.83	0.9764	yes	no
A5GSL5	DAPB_SYNR3	1, ., 3, ., 1, ., 2, 6	0.3542	0.8833	0.9706	yes	no
A0AK12	DAPB_LISW6	1, ., 3, ., 1, ., 2, 6	0.3074	0.8566	0.9771	yes	no
Q92AA1	DAPB_LISIN	1, ., 3, ., 1, ., 2, 6	0.3037	0.8566	0.9771	yes	no
B8E2S7	DAPB_DICTD	1, ., 3, ., 1, ., 2, 6	0.3150	0.8466	0.9477	yes	no
Q10YI1	DAPB_TRIEI	1, ., 3, ., 1, ., 2, 6	0.4379	0.8866	0.9672	yes	no
Q7NLC0	DAPB_GLOVI	1, ., 3, ., 1, ., 2, 6	0.3903	0.8766	0.9776	yes	no
Q3ZXV5	DAPB_DEHSC	1, ., 3, ., 1, ., 2, 6	0.3033	0.8533	0.9733	yes	no
B8HRK9	DAPB_CYAP4	1, ., 3, ., 1, ., 2, 6	0.4525	0.8866	0.9672	yes	no
Q8EQD3	DAPB_OCEIH	1, ., 3, ., 1, ., 2, 6	0.3037	0.86	0.9735	yes	no
Q7V1N1	DAPB_PROMP	1, ., 3, ., 1, ., 2, 6	0.3455	0.8733	0.9290	yes	no
Q3AYN5	DAPB_SYNS9	1, ., 3, ., 1, ., 2, 6	0.3442	0.8866	0.9602	yes	no
B0CE31	DAPB_ACAM1	1, ., 3, ., 1, ., 2, 6	0.3956	0.8566	0.9345	yes	no
B8FQZ3	DAPB_DESHD	1, ., 3, ., 1, ., 2, 6	0.3122	0.8766	0.9850	yes	no
Q7V7D4	DAPB_PROMM	1, ., 3, ., 1, ., 2, 6	0.3519	0.89	0.9434	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1	0.921
3rd Layer	1.3.1.26	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
TIGR00036	266	TIGR00036, dapB, dihydrodipicolinate reductase	1e-40
PRK00048	257	PRK00048, PRK00048, dihydrodipicolinate reductase;	2e-33
COG0289	266	COG0289, DapB, Dihydrodipicolinate reductase [Amin	1e-30
pfam05173	137	pfam05173, DapB_C, Dihydrodipicolinate reductase,	5e-14
pfam01113	122	pfam01113, DapB_N, Dihydrodipicolinate reductase,	4e-11
TIGR02130	275	TIGR02130, dapB_plant, dihydrodipicolinate reducta	2e-04

>gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase

 Score =  141 bits (358), Expect = 1e-40
 Identities = 70/279 (25%), Positives = 116/279 (41%), Gaps = 27/279 (9%)

Query: 35  NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVM 91
            IKV + GA   +GR  + A   A G+++  A + H     G D G +  +   + +PV 
Sbjct: 1   TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVT 59

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL       +      V+IDFT    V +++K A   G+R VV       E    L+  
Sbjct: 60  DDLE------AVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADL 113

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV--EIVESRPN-ARDFPSPDATQIAN 208
            +KA +  +IAP  SIG  L+ +    A+ +  +   EI+E      +D PS  A + A 
Sbjct: 114 AEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEIIELHHRHKKDAPSGTALKTAE 173

Query: 209 NLS-------NLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGE 261
            ++           +  RE ++     RG     + + +H++    +    TV F+  GE
Sbjct: 174 MIAEARGERLKNVAVTEREGLT---GERG----REEIGIHAVRGGDVVGEHTVMFAGDGE 226

Query: 262 VYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
              I H  +       G + A R +   +  VY +E  L
Sbjct: 227 RLEITHRASSRACFANGAVRAARWLADKEAGVYDMEDVL 265

[Amino acid biosynthesis, Aspartate family]. Length = 266

>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional

 Score =  122 bits (310), Expect = 2e-33
 Identities = 71/273 (26%), Positives = 112/273 (41%), Gaps = 27/273 (9%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           IKV + GA   +GR  + AV  A  +E+  A+D                   + +  DL 
Sbjct: 2   IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALG------VAITDDLE 55

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSALSAF 151
            VL          V+IDFT      +N++ A   G   V+    +    QL  +      
Sbjct: 56  AVLADAD------VLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEE-QLAELEEA--- 105

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISAS--FHYKNVEIVESR-PNARDFPSPDATQIAN 208
                +  +IAP  SIG  LL + A  A+      ++EI+E+   +  D PS  A ++A 
Sbjct: 106 --AKKIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAHHRHKVDAPSGTALKLAE 163

Query: 209 NLSN-LGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH 267
            ++   G+      +     A G    +  + +HS+    +     V F+  GE   I+H
Sbjct: 164 AIAEARGRDLKEVAVYGREGATGAR-VKGEIGIHSVRGGDIVGEHEVIFAGDGERIEIRH 222

Query: 268 DITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           D T   S  PG +LA R +V  K  +YG+E  L
Sbjct: 223 DATSRMSFAPGALLAARWLVGKKPGLYGMEDVL 255

Length = 257

>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]

 Score =  115 bits (291), Expect = 1e-30
 Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 15/273 (5%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S IKV + GA   +GR  + AV +A  +E+  A D   S S+G D G +  +   L +PV
Sbjct: 1   SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPV 59

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
             DL +V           V+IDFT      +N++ A   G   V+       E +  L  
Sbjct: 60  TDDLLLVK------ADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLRE 113

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISAS--FHYKNVEIVESR-PNARDFPSPDATQIA 207
             +K  +  +IAP  S+G  LL + A  A+      ++EI+E+   + +D PS  A ++A
Sbjct: 114 AAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEIIEAHHRHKKDAPSGTALKLA 171

Query: 208 NNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH 267
             ++       +++     +       E  + +HS+    +     V F+  GE   I+H
Sbjct: 172 EAIAEARGQDLKDEAVYGREGATGARKEGEIGIHSVRGGDIVGEHEVIFAGEGERIEIRH 231

Query: 268 DITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
             T   S   G +LA R +V     +Y +E  L
Sbjct: 232 RATSRDSFARGALLAARWLVGKPPGLYDMEDVL 264

Length = 266

>gnl|CDD|218479 pfam05173, DapB_C, Dihydrodipicolinate reductase, C-terminus

 Score = 67.5 bits (166), Expect = 5e-14
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 171 LLQQAAISASFHYKNVEIVES-RPNARDFPSPDATQIANNLS-NLGQIYNREDISTDVKA 228
           L ++AA        ++EI+E      +D PS  A ++A  ++   G+         +   
Sbjct: 8   LAEEAA-KYLGDDYDIEIIEIHHRQKKDAPSGTALKLAEAIAEARGEALEVVADEREGGT 66

Query: 229 RGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVH 288
           RG+    + + +HS+   G+     V F   GE   I HD    +   PG +LA   +  
Sbjct: 67  RGRS--VNEIGIHSVRGGGVVGEHEVIFGGDGERIEITHDAHSREIFAPGALLAAEWLAG 124

Query: 289 LK-NLVYGLEKFL 300
            K   +YG+E  L
Sbjct: 125 KKLPGLYGMEDVL 137

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The C-terminal domain of DapB has been proposed to be the substrate- binding domain. Length = 137

>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 22/135 (16%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPVMS 92
           IKV + GA   +GR  + A+ +A   E+  A+D   S  +G D G +        +PV  
Sbjct: 1   IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPL---GVPVTD 57

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSAL 148
           DL  VL          V+IDFT      +N++ A   G   V+    +    QL  +   
Sbjct: 58  DLEEVLADAD------VLIDFTTPEATLENLELALKHGKPLVIGTTGFTEE-QLAELKEA 110

Query: 149 SAFCDKASMGCLIAP 163
           +       +  +IAP
Sbjct: 111 A-----KKIPIVIAP 120

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Length = 122

>gnl|CDD|131185 TIGR02130, dapB_plant, dihydrodipicolinate reductase

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 20/234 (8%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL 94
           I++++NG   ++G+A V     A G+E V  +       E+   V   E  L  P  S+ 
Sbjct: 1   IQIMVNGCPGKMGKA-VAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGP--SER 57

Query: 95  TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154
              +G +       + ID+T  S V DN   A  +G   + +V         AL+     
Sbjct: 58  EARIGEVFAKYPELICIDYTHPSAVNDN---AAFYGKHGIPFVMGTTGGDREALAKLVAD 114

Query: 155 ASMGCLIAPTLSIGSILLQQAAIS-------ASFHYKNVEIVESRPNARDFPSPDATQIA 207
           A    +IAP ++   I+   AAI         +F    +E++ES   ++   S  A  + 
Sbjct: 115 AKHPAVIAPNMA-KQIVAFLAAIEFLAEEFPGAFAGYKLEVMESHQASKADASGTAKAVI 173

Query: 208 NNLSNLGQIYNREDIST--DVKARGQVLG--EDGVRVHSMVLPGLPSST-TVYF 256
                LG  Y+ +DI    D K + + +G  E+ +  H+  L  L S+  TV+F
Sbjct: 174 GCFQKLGFDYDMDDIEKIRDEKEQIERMGVPEEHLGGHAFHLYHLDSADGTVHF 227

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome [Amino acid biosynthesis, Aspartate family]. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	100.0
TIGR00036	266	dapB dihydrodipicolinate reductase.	100.0
PRK00048	257	dihydrodipicolinate reductase; Provisional	100.0
PLN02775	286	Probable dihydrodipicolinate reductase	100.0
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	100.0
PF05173	132	DapB_C: Dihydrodipicolinate reductase, C-terminus;	100.0
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	99.97
PRK13303	265	L-aspartate dehydrogenase; Provisional	99.7
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	99.7
PRK13304	265	L-aspartate dehydrogenase; Reviewed	99.65
PRK11579	346	putative oxidoreductase; Provisional	99.6
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.59
COG0673	342	MviM Predicted dehydrogenases and related proteins	99.58
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	99.55
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	99.52
PRK10206	344	putative oxidoreductase; Provisional	99.52
PRK08374	336	homoserine dehydrogenase; Provisional	99.43
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	99.43
PRK06270	341	homoserine dehydrogenase; Provisional	99.4
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	99.36
PRK06349	426	homoserine dehydrogenase; Provisional	99.3
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	99.25
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	99.23
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	99.22
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	99.17
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	99.14
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	99.1
PRK08300	302	acetaldehyde dehydrogenase; Validated	99.08
COG3804	350	Uncharacterized conserved protein related to dihyd	98.99
PRK06392	326	homoserine dehydrogenase; Provisional	98.94
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	98.81
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	98.78
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	98.74
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	98.73
PRK06813	346	homoserine dehydrogenase; Validated	98.73
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.72
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.7
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	98.69
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	98.65
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	98.6
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.54
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	98.49
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	98.45
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	98.44
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	98.42
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.41
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	98.34
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.31
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.29
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.28
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	98.27
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.25
PLN02700	377	homoserine dehydrogenase family protein	98.23
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	98.23
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	98.21
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	98.13
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.11
KOG1255	329	consensus Succinyl-CoA synthetase, alpha subunit [	98.09
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.08
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.07
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	98.05
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	98.05
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	98.03
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	98.03
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	98.02
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.0
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.96
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.95
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.94
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.94
PLN02688	266	pyrroline-5-carboxylate reductase	97.87
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.87
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.84
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.84
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.82
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.79
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.78
COG2344	211	AT-rich DNA-binding protein [General function pred	97.77
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.77
PRK07680	273	late competence protein ComER; Validated	97.77
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.76
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.76
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	97.74
TIGR03450	351	mycothiol_INO1 inositol 1-phosphate synthase, Acti	97.74
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.73
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	97.73
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.72
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.7
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.69
PLN02383	344	aspartate semialdehyde dehydrogenase	97.69
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.67
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.67
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.65
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.65
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.63
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	97.62
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.61
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.58
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	97.57
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.57
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	97.57
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.55
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	97.53
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.53
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.48
PLN02712	667	arogenate dehydrogenase	97.47
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.46
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.44
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	97.42
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.4
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	97.34
PLN02256	304	arogenate dehydrogenase	97.34
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	97.34
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	97.31
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.28
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.28
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.26
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.26
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.23
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.23
COG4693	361	PchG Oxidoreductase (NAD-binding), involved in sid	97.19
PLN02712	667	arogenate dehydrogenase	97.17
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	97.17
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.13
PRK08655	437	prephenate dehydrogenase; Provisional	97.08
COG2910	211	Putative NADH-flavin reductase [General function p	97.03
PLN02522	608	ATP citrate (pro-S)-lyase	97.02
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	97.01
PRK07417	279	arogenate dehydrogenase; Reviewed	97.0
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	96.98
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.96
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.95
PRK08223	287	hypothetical protein; Validated	96.94
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.94
PRK08618	325	ornithine cyclodeaminase; Validated	96.93
COG1810	224	Uncharacterized protein conserved in archaea [Func	96.92
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.91
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.87
CHL00194	317	ycf39 Ycf39; Provisional	96.86
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.83
PRK08507	275	prephenate dehydrogenase; Validated	96.81
PRK08818	370	prephenate dehydrogenase; Provisional	96.8
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.75
PLN02858	1378	fructose-bisphosphate aldolase	96.74
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.73
PF02593	217	dTMP_synthase: Thymidylate synthase; InterPro: IPR	96.69
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.69
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.66
PRK09414	445	glutamate dehydrogenase; Provisional	96.57
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.56
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.55
PLN02858	1378	fructose-bisphosphate aldolase	96.55
KOG0409	327	consensus Predicted dehydrogenase [General functio	96.51
PRK06091	555	membrane protein FdrA; Validated	96.49
COG1832	140	Predicted CoA-binding protein [General function pr	96.49
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	96.46
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.43
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.42
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	96.41
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.41
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	96.4
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	96.39
COG3367	339	Uncharacterized conserved protein [Function unknow	96.38
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.37
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	96.36
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.33
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.32
COG2099	257	CobK Precorrin-6x reductase [Coenzyme metabolism]	96.3
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.3
PRK08328	231	hypothetical protein; Provisional	96.28
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	96.28
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	96.26
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	96.26
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.25
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	96.2
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.19
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.14
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.12
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.12
PRK08605	332	D-lactate dehydrogenase; Validated	96.1
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.06
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.04
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.04
PRK06046	326	alanine dehydrogenase; Validated	96.03
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.02
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.0
PLN02778	298	3,5-epimerase/4-reductase	95.99
KOG2742	367	consensus Predicted oxidoreductase [General functi	95.98
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.97
PLN03139	386	formate dehydrogenase; Provisional	95.94
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.93
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.93
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.9
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.89
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.88
PRK07574	385	formate dehydrogenase; Provisional	95.86
PRK07411	390	hypothetical protein; Validated	95.85
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.83
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.83
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.83
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	95.81
COG1260	362	INO1 Myo-inositol-1-phosphate synthase [Lipid meta	95.74
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.74
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.74
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.72
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	95.7
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	95.69
PRK06545	359	prephenate dehydrogenase; Validated	95.69
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.69
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.68
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.62
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	95.62
PRK06444	197	prephenate dehydrogenase; Provisional	95.6
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	95.51
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.5
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.48
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.47
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.46
PLN00016	378	RNA-binding protein; Provisional	95.42
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	95.41
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	95.41
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	95.35
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.29
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.28
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.28
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	95.27
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.25
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.23
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.23
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	95.22
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.21
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.19
PLN02427	386	UDP-apiose/xylose synthase	95.19
PRK09496	453	trkA potassium transporter peripheral membrane com	95.14
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	95.13
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.13
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	95.13
PRK13243	333	glyoxylate reductase; Reviewed	95.13
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	95.12
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	95.08
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	95.01
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.01
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.0
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	94.98
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	94.94
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.94
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	94.9
PRK06141	314	ornithine cyclodeaminase; Validated	94.9
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.89
PRK07340	304	ornithine cyclodeaminase; Validated	94.86
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.84
PRK05865	854	hypothetical protein; Provisional	94.83
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.8
PRK06436	303	glycerate dehydrogenase; Provisional	94.77
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.72
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	94.7
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	94.67
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	94.66
PRK14851	679	hypothetical protein; Provisional	94.65
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.63
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	94.63
PRK07877	722	hypothetical protein; Provisional	94.61
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.59
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.56
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.55
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.54
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.54
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	94.53
PRK05086	312	malate dehydrogenase; Provisional	94.52
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	94.51
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.45
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	94.43
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.42
PRK12320	699	hypothetical protein; Provisional	94.38
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	94.29
PRK08291	330	ectoine utilization protein EutC; Validated	94.28
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.26
PLN00106	323	malate dehydrogenase	94.25
PRK15204	476	undecaprenyl-phosphate galactose phosphotransferas	94.21
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	94.2
PTZ00117	319	malate dehydrogenase; Provisional	94.19
PRK14852	989	hypothetical protein; Provisional	94.19
PLN02260	668	probable rhamnose biosynthetic enzyme	94.19
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.16
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.15
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.07
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.07
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	94.06
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.95
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.94
PRK05993	277	short chain dehydrogenase; Provisional	93.88
COG0300	265	DltE Short-chain dehydrogenases of various substra	93.87
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	93.81
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	93.76
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.76
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	93.72
PLN02477	410	glutamate dehydrogenase	93.71
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	93.66
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	93.64
PLN02166	436	dTDP-glucose 4,6-dehydratase	93.63
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.6
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	93.58
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	93.58
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	93.53
PRK12480	330	D-lactate dehydrogenase; Provisional	93.44
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	93.42
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.4
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.38
PLN02206	442	UDP-glucuronate decarboxylase	93.34
PLN00203	519	glutamyl-tRNA reductase	93.27
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	93.24
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.24
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.16
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	93.16
PRK06947	248	glucose-1-dehydrogenase; Provisional	93.14
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.11
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.1
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.09
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	93.07
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	93.06
PRK06988	312	putative formyltransferase; Provisional	93.04
PRK14030	445	glutamate dehydrogenase; Provisional	92.95
PRK05693	274	short chain dehydrogenase; Provisional	92.93
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	92.93
PTZ00325	321	malate dehydrogenase; Provisional	92.92
PRK14031	444	glutamate dehydrogenase; Provisional	92.82
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	92.74
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	92.73
PRK14982	340	acyl-ACP reductase; Provisional	92.63
PLN02240	352	UDP-glucose 4-epimerase	92.59
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	92.59
PRK06932	314	glycerate dehydrogenase; Provisional	92.55
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	92.5
COG3268	382	Uncharacterized conserved protein [Function unknow	92.49
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	92.48
PRK10669	558	putative cation:proton antiport protein; Provision	92.43
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	92.36
PLN02214	342	cinnamoyl-CoA reductase	92.34
PRK13940	414	glutamyl-tRNA reductase; Provisional	92.34
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	92.32
PRK06182	273	short chain dehydrogenase; Validated	92.32
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	92.28
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	92.26
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	92.23
PRK08177	225	short chain dehydrogenase; Provisional	92.21
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.18
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	92.11
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	92.03
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.01
PLN02602	350	lactate dehydrogenase	91.97
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	91.85
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	91.83
PRK10675	338	UDP-galactose-4-epimerase; Provisional	91.74
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	91.71
PRK03659	601	glutathione-regulated potassium-efflux system prot	91.68
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	91.67
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	91.66
KOG2733	423	consensus Uncharacterized membrane protein [Functi	91.61
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	91.59
PRK06180	277	short chain dehydrogenase; Provisional	91.56
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	91.55
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	91.53
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.49
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.47
PRK06487	317	glycerate dehydrogenase; Provisional	91.36
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844	100	GARS_N: Phosphoribosylglycinamide synthetase, N do	91.33
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	91.32
PLN02494	477	adenosylhomocysteinase	91.31
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	91.25
PRK03562	621	glutathione-regulated potassium-efflux system prot	91.16
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	91.02
PRK08340	259	glucose-1-dehydrogenase; Provisional	90.96
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.92
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	90.91
PRK09135	249	pteridine reductase; Provisional	90.91
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	90.9
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	90.84
PRK06199	379	ornithine cyclodeaminase; Validated	90.76
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	90.74
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.73
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	90.68
PRK08267	260	short chain dehydrogenase; Provisional	90.61
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	90.55
PRK08017	256	oxidoreductase; Provisional	90.55
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	90.54
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.49
PRK05442	326	malate dehydrogenase; Provisional	90.48
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	90.48
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	90.47
PRK06823	315	ornithine cyclodeaminase; Validated	90.45
PRK07904	253	short chain dehydrogenase; Provisional	90.43
PTZ00075	476	Adenosylhomocysteinase; Provisional	90.35
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.35
PLN02928	347	oxidoreductase family protein	90.35
PRK10538	248	malonic semialdehyde reductase; Provisional	90.33
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	90.33
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	90.32
PRK09134	258	short chain dehydrogenase; Provisional	90.28
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	90.28
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	90.27
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	90.14
PLN02260	668	probable rhamnose biosynthetic enzyme	90.09
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	90.06
PRK15076	431	alpha-galactosidase; Provisional	90.03
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.94
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	89.92
PRK12938	246	acetyacetyl-CoA reductase; Provisional	89.9
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	89.89
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	89.86
PRK06179	270	short chain dehydrogenase; Provisional	89.83
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	89.8
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	89.78
PRK06953	222	short chain dehydrogenase; Provisional	89.74
PLN02650	351	dihydroflavonol-4-reductase	89.72
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.69
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.68
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	89.63
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.58
PRK07454	241	short chain dehydrogenase; Provisional	89.55
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	89.5
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	89.44
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	89.44
PRK06153	393	hypothetical protein; Provisional	89.39
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	89.24
PLN00198	338	anthocyanidin reductase; Provisional	89.2
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	89.18
COG2130	340	Putative NADP-dependent oxidoreductases [General f	89.17
PRK12464	383	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	89.13
PF13727	175	CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.	89.02
PRK11730	715	fadB multifunctional fatty acid oxidation complex	88.99
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	88.93
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	88.93
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	88.87
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	88.86
PRK06407	301	ornithine cyclodeaminase; Provisional	88.83
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	88.82
PRK07825	273	short chain dehydrogenase; Provisional	88.82
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	88.7
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	88.67
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	88.66
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	88.64
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	88.5
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	88.47
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	88.45
PRK12743	256	oxidoreductase; Provisional	88.42
PRK07326	237	short chain dehydrogenase; Provisional	88.4
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	88.38
PRK07024	257	short chain dehydrogenase; Provisional	88.32
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	88.21
PLN02896	353	cinnamyl-alcohol dehydrogenase	88.19
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	87.97
COG2403	449	Predicted GTPase [General function prediction only	87.93
PRK09186	256	flagellin modification protein A; Provisional	87.88
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	87.82
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.81
PRK06719	157	precorrin-2 dehydrogenase; Validated	87.73
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	87.69
PF08484	160	Methyltransf_14: C-methyltransferase C-terminal do	87.69
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	87.52
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	87.4
PLN00112	444	malate dehydrogenase (NADP); Provisional	87.38
PRK05586	447	biotin carboxylase; Validated	87.36
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	87.21
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	87.21
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	87.19
PRK12939	250	short chain dehydrogenase; Provisional	87.18
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.15
PRK13789	426	phosphoribosylamine--glycine ligase; Provisional	87.12
PRK07109	334	short chain dehydrogenase; Provisional	87.04
PRK06139	330	short chain dehydrogenase; Provisional	86.94
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	86.93
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	86.92
PLN03209	576	translocon at the inner envelope of chloroplast su	86.79
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	86.78
PRK08219	227	short chain dehydrogenase; Provisional	86.75
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	86.71
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	86.67
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	86.64
PRK05872	296	short chain dehydrogenase; Provisional	86.63
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.48
PRK06483	236	dihydromonapterin reductase; Provisional	86.43
PRK07806	248	short chain dehydrogenase; Provisional	86.36
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	86.35
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	86.35
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	86.31
PRK05225	487	ketol-acid reductoisomerase; Validated	86.29
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	86.27
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	86.2
PRK12742	237	oxidoreductase; Provisional	86.13
PRK07589	346	ornithine cyclodeaminase; Validated	85.95
PRK07023	243	short chain dehydrogenase; Provisional	85.91
PRK07478	254	short chain dehydrogenase; Provisional	85.91
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.9
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	85.85
PLN02306	386	hydroxypyruvate reductase	85.84
PRK07578	199	short chain dehydrogenase; Provisional	85.74
PRK00994	277	F420-dependent methylenetetrahydromethanopterin de	85.72
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	85.64
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	85.58
PRK09496	453	trkA potassium transporter peripheral membrane com	85.56

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=100.00  E-value=8.4e-80  Score=556.62  Aligned_cols=251  Identities=31%  Similarity=0.434  Sum_probs=231.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      |||||+|+||+|||||.+++++.+.|+++|+++++++   ..|.|+++++|. ...++++++|+....      .++||+
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~-~~~gv~v~~~~~~~~------~~~DV~   73 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGL-GLLGVPVTDDLLLVK------ADADVL   73 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccc-cccCceeecchhhcc------cCCCEE
Confidence            4799999999999999999999999999999999964   468899999988 588999999976665      589999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCC--CCeEE
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEI  188 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~--~dieI  188 (300)
                      ||||+|+++.+++++|+++|+++|||||||++++.++|++++++  +|+|+|||||+|+|||+++++++++++  ||+||
T Consensus        74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l~~~aak~l~~~DiEI  151 (266)
T COG0289          74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEI  151 (266)
T ss_pred             EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHHHHHHHHHHHHHhcCCCCEEe
Confidence            99999999999999999999999999999999999999999999  999999999999999999998888864  79999


Q ss_pred             EEccC-CCCCCCchHHHHHHHHHHhcC-------CccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCC
Q 022250          189 VESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPG  260 (300)
Q Consensus       189 iE~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~  260 (300)
                      +|+|| +|+|||||||++|+|.|++.+       ..|+|++.++   .|.    +++|+|||+|+|++||+|+|+|+++|
T Consensus       152 iE~HHr~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g---~r~----~~~Igi~svR~G~ivG~H~V~F~~~G  224 (266)
T COG0289         152 IEAHHRHKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATG---ARK----EGEIGIHSVRGGDIVGEHEVIFAGEG  224 (266)
T ss_pred             hhhhcccCCCCCcHHHHHHHHHHHHhhccccccceeecccCCcC---CCC----CCCceeEEeecCCcceeEEEEEecCC
Confidence            99999 699999999999999999843       2456776543   342    46899999999999999999999999


Q ss_pred             cEEEEEEEeCCccccHHHHHHHHHHhhccCCeeeeccccC
Q 022250          261 EVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL  300 (300)
Q Consensus       261 E~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL  300 (300)
                      |+|||+|+|+||.+||+||++||+|+.+|+||+|+|+|||
T Consensus       225 E~iei~H~A~sR~~Fa~Gal~aa~wi~~k~~g~Y~m~dvL  264 (266)
T COG0289         225 ERIEIRHRATSRDSFARGALLAARWLVGKPPGLYDMEDVL  264 (266)
T ss_pred             cEEEEEEeeccHHHHHHHHHHHHHHHhCCCCCccchHHhh
Confidence            9999999999999999999999999999999999999997

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=100.00  E-value=1.1e-72  Score=520.70  Aligned_cols=252  Identities=28%  Similarity=0.421  Sum_probs=226.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ||||+|+||+|+||+.+++.+.+.++++|++++|+.   ..+++++++.+. .+.++++++|++++ .     .++||||
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~-~~~gv~~~~d~~~l-~-----~~~DvVI   73 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVTDDLEAV-E-----TDPDVLI   73 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCc-CcCCceeeCCHHHh-c-----CCCCEEE
Confidence            489999997799999999999999999999999942   236677777765 35689999999998 3     4799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccC--CCCeEEE
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEIV  189 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~--~~dieIi  189 (300)
                      |||+|+.+.++++.|+++|+|+|+|||||++++.++|.++|++++++++++||||+|+|+|+++++.+++.  .||+||+
T Consensus        74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~  153 (266)
T TIGR00036        74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEII  153 (266)
T ss_pred             ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCCCEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999988887775  3799999


Q ss_pred             EccC-CCCCCCchHHHHHHHHHHhcC-------CccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCCc
Q 022250          190 ESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGE  261 (300)
Q Consensus       190 E~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~E  261 (300)
                      |+|| +|+|+|||||++|++.|++.+       ..|+|++..   ..|+    +++|+|||+|+|+++|+|||+|++++|
T Consensus       154 E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~---~~r~----~~~i~i~s~R~g~i~g~h~v~f~~~~e  226 (266)
T TIGR00036       154 ELHHRHKKDAPSGTALKTAEMIAEARGERLKNVAVTEREGLT---GERG----REEIGIHAVRGGDVVGEHTVMFAGDGE  226 (266)
T ss_pred             eeccCCCCCCCCHHHHHHHHHHHHhhccccccCccccccCCc---CCCC----CCccceEEEecCCceEEEEEEEcCCCe
Confidence            9999 699999999999999998743       245555433   2453    368999999999999999999999999


Q ss_pred             EEEEEEEeCCccccHHHHHHHHHHhhccCCeeeeccccC
Q 022250          262 VYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL  300 (300)
Q Consensus       262 ~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL  300 (300)
                      +|||+|+|+||++||+|||+||+||.+|+||+|+|+|||
T Consensus       227 ~i~i~H~a~~R~~fa~Gal~Aa~~l~~~~~g~y~m~dvl  265 (266)
T TIGR00036       227 RLEITHRASSRACFANGAVRAARWLADKEAGVYDMEDVL  265 (266)
T ss_pred             EEEEEEEECcHHHhHHHHHHHHHHHcCCCCcEEeHHHhc
Confidence            999999999999999999999999999999999999997

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=100.00  E-value=1.3e-67  Score=484.61  Aligned_cols=245  Identities=30%  Similarity=0.417  Sum_probs=213.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ||||+|+|++|+||+.+++.+.+.++++|++++|++..  .....    ...+++.++|++++++      ++|+|||||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~--~~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS--PLVGQ----GALGVAITDDLEAVLA------DADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc--ccccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence            58999999999999999999988899999999997531  11111    2467888999999984      699999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCC--CCeEEEEcc
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR  192 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~H  192 (300)
                      +|+.+.+++..|+++|+|+|+|||||++++.++|.+++  +++|++++||||+|+|++.++++.+++.+  ||+||+|+|
T Consensus        69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa--~~~~v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei~E~H  146 (257)
T PRK00048         69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA--KKIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAH  146 (257)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh--cCCCEEEECcchHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            99999999999999999999999999999999999966  44999999999999999998888777654  799999999


Q ss_pred             C-CCCCCCchHHHHHHHHHHhcC-------CccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCCcEEE
Q 022250          193 P-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS  264 (300)
Q Consensus       193 h-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~E~ie  264 (300)
                      | +|+|+|||||++|++.|++.+       ..++|.+      .++.. .+++|+|||+|+|+++|+|||+|++++|+||
T Consensus       147 H~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~------~~~~~-~~~~i~i~s~R~g~~~g~h~v~f~~~~e~i~  219 (257)
T PRK00048        147 HRHKVDAPSGTALKLAEAIAEARGRDLKEVAVYGREG------ATGAR-VKGEIGIHSVRGGDIVGEHEVIFAGDGERIE  219 (257)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcccccccceeccCC------ccCCc-CCCCccEEEEEcCCceEEEEEEEecCCcEEE
Confidence            9 699999999999999998743       1233322      12221 1368999999999999999999999999999


Q ss_pred             EEEEeCCccccHHHHHHHHHHhhccCCeeeeccccC
Q 022250          265 IKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL  300 (300)
Q Consensus       265 l~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL  300 (300)
                      |+|+|.||++||+|||+||+||.+|++|+|+|+|||
T Consensus       220 i~H~a~~R~~fa~Gal~aa~~~~~~~~g~y~~~d~l  255 (257)
T PRK00048        220 IRHDATSRMSFAPGALLAARWLVGKKPGLYGMEDVL  255 (257)
T ss_pred             EEEEECcHHhHHHHHHHHHHHHhCCCCcEECHHHhh
Confidence            999999999999999999999999999999999997

>PLN02775 Probable dihydrodipicolinate reductase

Probab=100.00  E-value=5.5e-67  Score=481.92  Aligned_cols=255  Identities=20%  Similarity=0.308  Sum_probs=216.7

Q ss_pred             CCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCcCCCCccee--cCHHHHHhcccccCC
Q 022250           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQSKA  106 (300)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~-~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~  106 (300)
                      +|+++.+||+|+||+||||+++++++.+ ++++||+.+|+...|.+.+ ++.|    .+++++  +|+++++.+.+.+ .
T Consensus         6 ~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g----~~v~~~~~~dl~~~l~~~~~~-~   79 (286)
T PLN02775          6 SPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCG----VEVRLVGPSEREAVLSSVKAE-Y   79 (286)
T ss_pred             CCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceecc----ceeeeecCccHHHHHHHhhcc-C
Confidence            4567789999999999999999999998 9999999999876666766 6654    278888  9999999642222 5


Q ss_pred             cc-EEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCC--
Q 022250          107 RA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--  183 (300)
Q Consensus       107 ~D-VVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~--  183 (300)
                      +| |+||||+|+++.+++++|+++|+|+|+|||||+++|++++   ++++++|++|+||||+|+|+|+++++.+++++  
T Consensus        80 ~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~---~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~l~~  156 (286)
T PLN02775         80 PNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKD---VEESGVYAVIAPQMGKQVVAFQAAMEIMAEQFPG  156 (286)
T ss_pred             CCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---HhcCCccEEEECcccHHHHHHHHHHHHHHHhccc
Confidence            89 9999999999999999999999999999999999865544   55567999999999999999999888776543  


Q ss_pred             ----CCeEEEEccC-CCCCCCchHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEE--EEEcCCCCeeEEEEE
Q 022250          184 ----KNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVH--SMVLPGLPSSTTVYF  256 (300)
Q Consensus       184 ----~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~--s~R~g~ivg~H~V~f  256 (300)
                          ||+||+|+|| +|+|+ ||||++|++.|++++..|+|++....+..+.   ..++++|+  ++|+|+   +|||+|
T Consensus       157 ~f~~yDiEIiE~HH~~K~Da-SGTA~~lae~i~~~g~~~~~~~~~~~R~~~~---~~~~igi~~~~lRgg~---~HtV~f  229 (286)
T PLN02775        157 AFSGYTLEVVESHQATKLDT-SGTAKAVISSFRKLGVSFDMDQIELIRDPKQ---QLEGVGVPEEHLNGHA---FHTYRL  229 (286)
T ss_pred             ccCCCCEEEEECCCCCCCCC-cHHHHHHHHHHHHhCCcccccccccccCccc---cccccceeeecccCCC---cEEEEE
Confidence                7899999999 69999 9999999999988654555555432111110   12578895  999999   899999


Q ss_pred             ccCCcE--EEEEEEeCCccccHHHHHHHHHHhhcc-----CCeeeeccccC
Q 022250          257 SRPGEV--YSIKHDITDVQSLMPGLILAIRKVVHL-----KNLVYGLEKFL  300 (300)
Q Consensus       257 ~~~~E~--iel~H~a~sR~~Fa~Gal~Aa~~l~~~-----~~g~y~m~dvL  300 (300)
                      .+++|+  |||+|+|+||++||.|||+||+||.+|     +||+|+|+|||
T Consensus       230 ~~~~E~~~iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~pGlY~M~DVL  280 (286)
T PLN02775        230 TSPDGTVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMIDVL  280 (286)
T ss_pred             ecCCCeEEEEEEEEeCcHHHHHHHHHHHHHHHhcCcccCCCCCccCHHHHH
Confidence            999999  999999999999999999999999999     48999999987

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=100.00  E-value=8.6e-67  Score=478.75  Aligned_cols=243  Identities=20%  Similarity=0.264  Sum_probs=216.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCcCCCCcce------ecCHHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~~~~~g~~~~~gv~v------~~dl~~~l~~~~~~~~~D  108 (300)
                      +||+|+||+||||+++++++.+ ++++||+. +|++..+.|.+++.|.    ++++      +++++++++     ..+|
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d   70 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE   70 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence            5899999999999999999987 89999998 8877677788887753    7888      889999985     4589


Q ss_pred             -EEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCC----
Q 022250          109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY----  183 (300)
Q Consensus       109 -VVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~----  183 (300)
                       |+||||+|+++++++++|+++|+|+|+|||||+++++++|.+.   .++|++||||||+|+|||+++++.+++++    
T Consensus        71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~---~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f  147 (275)
T TIGR02130        71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVAD---AKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAF  147 (275)
T ss_pred             EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHh---cCCCEEEECcccHHHHHHHHHHHHHHHhhcccc
Confidence             9999999999999999999999999999999999988777554   44999999999999999999888777654    


Q ss_pred             --CCeEEEEccC-CCCCCCchHHHHHHHHHHhcCCccccCccccccccccccccCC-CeeEEEEEcCCCCe---eEEEEE
Q 022250          184 --KNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGED-GVRVHSMVLPGLPS---STTVYF  256 (300)
Q Consensus       184 --~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~-~i~i~s~R~g~ivg---~H~V~f  256 (300)
                        ||+||+|+|| +|+|+ ||||++|++.+++++..|+|+++.+   .|.    ++ +|+|+|+|+ +++|   +|||+|
T Consensus       148 ~~ydvEIiE~HH~~K~Da-SGTA~~l~~~i~~~~~~~~~~~~~~---~R~----~~~~igi~siR~-~~vgGh~~Htv~f  218 (275)
T TIGR02130       148 AGYKLEVMESHQASKADA-SGTAKAVIGCFQKLGFDYDMDDIEK---IRD----EKEQIERMGVPE-EHLGGHAFHLYHL  218 (275)
T ss_pred             CCCCEEEEEcCCCCCCCC-CHHHHHHHHHHHHhCCccCcccccc---cCC----CCCccceEEecC-cccCCCccEEEEE
Confidence              6999999999 69999 9999999999997666788877653   332    23 899999999 6666   999999


Q ss_pred             ccCCcE--EEEEEEeCCccccHHHHHHHHHHhhcc-----CCeeeeccccC
Q 022250          257 SRPGEV--YSIKHDITDVQSLMPGLILAIRKVVHL-----KNLVYGLEKFL  300 (300)
Q Consensus       257 ~~~~E~--iel~H~a~sR~~Fa~Gal~Aa~~l~~~-----~~g~y~m~dvL  300 (300)
                      .+++|+  |||+|+|+||++||.|||+||+||.+|     +||+|+|+|||
T Consensus       219 ~s~~e~i~iel~H~A~sR~~FA~GAl~AA~wL~~k~~~~~~~GlY~m~DvL  269 (275)
T TIGR02130       219 DSADGTVHFEFQHNVCGRKIYAEGTVDAVLFLADKIIAAAEAKIFNMIDVL  269 (275)
T ss_pred             ecCCCeEEEEEEEEECcHHHHHHHHHHHHHHHhcccccCCCCCccCHHHHH
Confidence            999999  699999999999999999999999999     88999999986

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase

Probab=100.00  E-value=2.7e-42  Score=286.98  Aligned_cols=127  Identities=27%  Similarity=0.325  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhccC---CCCeEEEEccC-CCCCCCchHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEE
Q 022250          168 GSILLQQAAISASFH---YKNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSM  243 (300)
Q Consensus       168 Gv~ll~~~a~~~~~~---~~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~  243 (300)
                      |||||+++++.++++   .||+||+|+|| +|+|+|||||++|++.|.+...... .  .   ..+++.-.+++|+|||+
T Consensus         1 Gv~ll~~l~~~aa~~l~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~-~--~---~~~~~~~~~~~i~v~s~   74 (132)
T PF05173_consen    1 GVNLLMKLAKQAAKLLPNGYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDL-S--E---VARGGREQENEIGVHSV   74 (132)
T ss_dssp             HHHHHHHHHHHHHHHTTTTSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEH-H--H---HEEECCGETTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCccc-c--c---cccccccCCccceEEEE
Confidence            899999988887764   38899999999 6999999999999999988542100 0  0   00111002489999999


Q ss_pred             EcCCCCeeEEEEEccCCcEEEEEEEeCCccccHHHHHHHHHHhhc-cCCeeeeccccC
Q 022250          244 VLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVH-LKNLVYGLEKFL  300 (300)
Q Consensus       244 R~g~ivg~H~V~f~~~~E~iel~H~a~sR~~Fa~Gal~Aa~~l~~-~~~g~y~m~dvL  300 (300)
                      |+|+++|+|+|+|.+++|+|||+|+|+||++||.|||+||+||.+ +++|+|+|+|||
T Consensus        75 R~g~i~G~H~V~f~~~~E~i~l~H~a~sR~~Fa~Gal~Aa~~l~~~~~~G~y~m~dvL  132 (132)
T PF05173_consen   75 RGGGIVGEHEVIFGSPGETIELTHRAHSRSIFAEGALRAARWLAGKKKPGLYSMDDVL  132 (132)
T ss_dssp             E-TT--EEEEEEEEETTEEEEEEEEESSTHHHHHHHHHHHHHHTTSSSSEEE-HHHHC
T ss_pred             EcCCCCEEEEEEEcCCCcEEEEEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEehHHhC
Confidence            999999999999999999999999999999999999999999999 559999999997

Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=99.97  E-value=3.3e-31  Score=218.13  Aligned_cols=121  Identities=36%  Similarity=0.604  Sum_probs=108.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |||+|+|++||||+.+++.+.++++++|+++++++.   .|+|+++++|.. +.++++++|++++++      .+||+||
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID   73 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID   73 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence            799999999999999999999999999999999754   799999999985 899999999999995      5999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      ||+|+++.+++++|+++|+|+|+|||||+++|.++|++++++  +|++|||||
T Consensus        74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~Nf  124 (124)
T PF01113_consen   74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK--IPVLIAPNF  124 (124)
T ss_dssp             ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT--SEEEE-SSS
T ss_pred             cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEeCCC
Confidence            999999999999999999999999999999999999999998  999999998

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=99.70  E-value=3.5e-15  Score=137.86  Aligned_cols=132  Identities=15%  Similarity=0.135  Sum_probs=104.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ||||+|+|| |+||+.+++.+.+.++++|++++++...........    ..++++++|++++ +     .++|+||+||
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~-----~~~DvVve~t   69 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-P-----QRPDLVVECA   69 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-c-----cCCCEEEECC
Confidence            589999999 999999999999889999999997542111112211    1267889999988 5     5899999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCCC-CC-HHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHH
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTTG-~~-~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~  178 (300)
                      ++..+.+++..++++|+|+|+++++ ++ .+..++|.++|+++|..+++ ++..+|..-+.+.++.
T Consensus        70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg~d~l~~~~~  134 (265)
T PRK13303         70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGGIDALAAAKE  134 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhCHHHHHHHHh
Confidence            9999999999999999999999997 65 44468899999999987666 6666676544444433

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.70  E-value=2.3e-16  Score=127.33  Aligned_cols=116  Identities=27%  Similarity=0.338  Sum_probs=101.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |||+|+|+ |.+|+.+.+.+.+. +++++++++|++.  ..+..+.   ..++++.|+|++++++.    .++|+|+.+|
T Consensus         1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t   70 (120)
T PF01408_consen    1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT   70 (120)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence            69999998 99999999888877 8999999999753  2233332   46788899999999973    6899999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEE
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      ++..+.+.+..|+++|+||++++| +.+.++.++|.++++++++.+.+
T Consensus        71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V  118 (120)
T PF01408_consen   71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV  118 (120)
T ss_dssp             SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred             CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence            999999999999999999999999 78999999999999999988654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=99.65  E-value=2.2e-14  Score=132.52  Aligned_cols=228  Identities=14%  Similarity=0.127  Sum_probs=148.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ||||+|+|+ |+||+.+++.+.+.+ ++++++++|++.  ..+..+.   ..++++.++|+++++.      ++|+|+++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a---~~~~~~~~~~~~ell~------~~DvVvi~   68 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNL--EKAENLA---SKTGAKACLSIDELVE------DVDLVVEC   68 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHH---HhcCCeeECCHHHHhc------CCCEEEEc
Confidence            479999998 999999999998764 899999999753  2233333   3456788999999983      79999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCC-C-CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEc
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES  191 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG-~-~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~  191 (300)
                      ++|+.+.+++..++++|+++++.++| + +++..++|.++|+++|+.+++.+..-.|...+. .+ .+. ..+.+.+.-.
T Consensus        69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i~-a~-~~G-~i~~V~~~~~  145 (265)
T PRK13304         69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGIK-AA-SLG-EIKSVTLTTR  145 (265)
T ss_pred             CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHHH-HH-hcC-CccEEEEEEe
Confidence            99999999999999999999999886 3 677788999999999988877554444443332 11 222 2345555444


Q ss_pred             -cCC-CCCC-------------C----chHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCe-e
Q 022250          192 -RPN-ARDF-------------P----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-S  251 (300)
Q Consensus       192 -Hh~-K~Da-------------P----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg-~  251 (300)
                       |.. -+++             |    +|||.   |++..++++.+..-..  ..+..   +...+.+-+.  |++.+ .
T Consensus       146 k~p~~~~~~~~~~~~~~~~~~~~~~~f~G~a~---ea~~~fP~n~Nva~a~--ala~~---~~~~v~l~ad--p~~~~n~  215 (265)
T PRK13304        146 KPPKGLEGALKELGIDLEEIKEPKVLFEGKAF---EAVKKFPANINVAATL--SLASI---YPAKVKIIAD--PNLDRNV  215 (265)
T ss_pred             cChHHhCcChhhcCCCccccccceEEEEecHH---HHHHHCCCchhHHHHH--HHhcC---CCceEEEEEC--CCCCCce
Confidence             321 1122             2    67777   4444443322211000  01110   1233444443  44444 7


Q ss_pred             EEEEEccCCcEEEEEEEe----CC-ccccHHHHHHHHHHhhc
Q 022250          252 TTVYFSRPGEVYSIKHDI----TD-VQSLMPGLILAIRKVVH  288 (300)
Q Consensus       252 H~V~f~~~~E~iel~H~a----~s-R~~Fa~Gal~Aa~~l~~  288 (300)
                      |+|...|++-+++++=+-    .| |++ +--|+.+++-|.+
T Consensus       216 h~i~~~g~~g~~~~~~~~~p~~~np~ts-~laa~s~~~~~~~  256 (265)
T PRK13304        216 HEITVKGSFGTFKTRVENVPCPDNPKTS-ALAAYSAIRLLKD  256 (265)
T ss_pred             EEEEEEecceEEEEEEECCcCCCCCchH-HHHHHHHHHHHHh
Confidence            999999999998888444    12 444 4445555554443

>PRK11579 putative oxidoreductase; Provisional

Probab=99.60  E-value=2.3e-14  Score=136.66  Aligned_cols=144  Identities=17%  Similarity=0.150  Sum_probs=114.2

Q ss_pred             cceEEEEcCCchHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ++||+|+|+ |.||+ .++..+...++++|++++|++.  ..+..     ...++++|+|++++++    +.++|+|+.+
T Consensus         4 ~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~ell~----~~~vD~V~I~   71 (346)
T PRK11579          4 KIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDA--TKVKA-----DWPTVTVVSEPQHLFN----DPNIDLIVIP   71 (346)
T ss_pred             cceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHHh-----hCCCCceeCCHHHHhc----CCCCCEEEEc
Confidence            699999998 99998 5788888889999999999753  11111     1124678999999997    3679999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEEEE
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE  190 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieIiE  190 (300)
                      |++..+.+++..|+++||||+|++| ..+.++.++|.++|+++++.+.+..|  |.....-++++.+.  +..-++..++
T Consensus        72 tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~~  149 (346)
T PRK11579         72 TPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAE--GVLGEVAYFE  149 (346)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhc--CCCCCeEEEE
Confidence            9999999999999999999999999 78999999999999999988877666  56666666666542  2234555555


Q ss_pred             cc
Q 022250          191 SR  192 (300)
Q Consensus       191 ~H  192 (300)
                      .|
T Consensus       150 ~~  151 (346)
T PRK11579        150 SH  151 (346)
T ss_pred             EE
Confidence            54

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.59  E-value=2.9e-13  Score=125.54  Aligned_cols=227  Identities=15%  Similarity=0.182  Sum_probs=145.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ++||+|+|+ |+||+.+++.+.+ .++++|++++|++.  ..+.+++   ..++. +.++|++++++      ++|+|++
T Consensus         6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a---~~~g~~~~~~~~eell~------~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFI---WGLRRPPPVVPLDQLAT------HADIVVE   73 (271)
T ss_pred             eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHH---HhcCCCcccCCHHHHhc------CCCEEEE
Confidence            599999998 9999999999987 48999999999753  2223333   24453 56889999984      6899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEc-
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES-  191 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~-  191 (300)
                      +++++.+.+++..++++|+++++.+++- .++.++|.++++++|.++.+.+.|--|...+. .. .+.+ ...+.++=. 
T Consensus        74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~ga-l~~~~~L~~~A~~~g~~l~v~sGa~~g~d~l~-~g-~iG~-~~~v~~~trk  149 (271)
T PRK13302         74 AAPASVLRAIVEPVLAAGKKAIVLSVGA-LLRNEDLIDLARQNGGQIIVPTGALLGLDAVT-AA-AEGT-IHSVKMITRK  149 (271)
T ss_pred             CCCcHHHHHHHHHHHHcCCcEEEecchh-HHhHHHHHHHHHHcCCEEEEcchHHHhHHHHH-HH-HcCC-ceEEEEEEec
Confidence            9999999999999999999999987662 23567899999999999888776666643321 11 1111 111111111 


Q ss_pred             cCC-CCCC---------------C----chHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCe-
Q 022250          192 RPN-ARDF---------------P----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-  250 (300)
Q Consensus       192 Hh~-K~Da---------------P----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg-  250 (300)
                      +.. -+..               |    +|||.   |++..++++.+..-...+++     +|.+...|.-+==|++.+ 
T Consensus       150 pp~~~~g~~~~~~~~~dld~~~~~~~~f~G~a~---ea~~~fP~n~Nvaaa~ala~-----~g~d~t~v~l~adP~~~~n  221 (271)
T PRK13302        150 PPDGLKGAPFLVTNNIDIDGLTEPLLLFEGSAR---EAAKGFPANLNVAVALSLAG-----IGPDRTTLEIWADPGVTRN  221 (271)
T ss_pred             CchHhccChhhhhcCCCccccccceEEEEecHH---HHHHHCCcchhHHHHHHHhc-----cCccceEEEEEECCCCCCc
Confidence            110 1111               2    67777   44444443322111111111     112223333333377777 


Q ss_pred             eEEEEEccCCcEEEEEEEeCC------ccccHHHHHHHHHHhhc
Q 022250          251 STTVYFSRPGEVYSIKHDITD------VQSLMPGLILAIRKVVH  288 (300)
Q Consensus       251 ~H~V~f~~~~E~iel~H~a~s------R~~Fa~Gal~Aa~~l~~  288 (300)
                      .|+|..-|++-+++++  ..|      |++ +--|+.+++-|.+
T Consensus       222 ~H~i~~~g~~g~~~~~--~~~~p~~npkts-~laa~s~~~~l~~  262 (271)
T PRK13302        222 VHRIEVDADSARFSMT--IENIPSENPKTG-RITAQSVIALLRK  262 (271)
T ss_pred             eEEEEEEeceEEEEEE--EEcCcCCCCchH-HHHHHHHHHHHHh
Confidence            8999999999999988  444      444 4445555554443

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=99.58  E-value=1.3e-14  Score=136.79  Aligned_cols=148  Identities=20%  Similarity=0.188  Sum_probs=113.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCCccEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      +++||+|+|+.|.+++.++..+.+.++ +++++++|++.  ..+..++   ..++++ .|+|++++++    +.++|+|+
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~----~~~iD~V~   72 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLA----DPDIDAVY   72 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhc----CCCCCEEE
Confidence            579999999833556779999988887 79999999764  2333344   467774 8999999997    35689999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCcH--HHHHHHHHHHHhccCCCCeEE
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQAAISASFHYKNVEI  188 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~Si--Gv~ll~~~a~~~~~~~~dieI  188 (300)
                      ..|++..|.+++..|+++||||+|++| +.|.++.++|.++|+++++.+.+.-|+-.  .+.-++++...  ...-++..
T Consensus        73 Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~--g~lG~v~~  150 (342)
T COG0673          73 IATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDS--GALGEVVS  150 (342)
T ss_pred             EcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhc--CCcCceEE
Confidence            999999999999999999999999999 89999999999999999888887766543  33333444332  12345555


Q ss_pred             EEcc
Q 022250          189 VESR  192 (300)
Q Consensus       189 iE~H  192 (300)
                      ++.+
T Consensus       151 ~~~~  154 (342)
T COG0673         151 VQAS  154 (342)
T ss_pred             EEEE
Confidence            5543

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=99.55  E-value=1.3e-12  Score=119.90  Aligned_cols=231  Identities=10%  Similarity=0.059  Sum_probs=150.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |.+||+|+|| |.||+.+++.+...  ++++|+++.++..  .....+.+     .+++++|+++++.     ..+|+||
T Consensus         1 ~~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~-----~~~~~~~l~~ll~-----~~~DlVV   67 (267)
T PRK13301          1 MTHRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAG-----RVALLDGLPGLLA-----WRPDLVV   67 (267)
T ss_pred             CceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhc-----cCcccCCHHHHhh-----cCCCEEE
Confidence            5689999999 99999999998754  4599999988653  22223331     2778899999875     5899999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCCC-C-CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEE
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV  189 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTTG-~-~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIi  189 (300)
                      ++.+++++.++...++++|+++|+.++| | +++..++|.++|++++..+. -|.-.+|.--..+.++...  ...+.++
T Consensus        68 E~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~-ipSGAigGlD~l~aa~~~~--~~~v~~~  144 (267)
T PRK13301         68 EAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIR-VPAGAIAGLDYLQAVAGRD--DAEVVYE  144 (267)
T ss_pred             ECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEE-EeChHHHhHHHHHHhhccC--ceEEEEE
Confidence            9999999999999999999999999986 4 45567889999999887754 4778888765555554432  2334432


Q ss_pred             Ec-cCC-CCCC-------------C----chHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCe
Q 022250          190 ES-RPN-ARDF-------------P----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS  250 (300)
Q Consensus       190 E~-Hh~-K~Da-------------P----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg  250 (300)
                      =+ |.. -+.+             |    +|||.   |++..++++.|..-...+.+- |-  +...+.+.+.  |++.+
T Consensus       145 t~K~P~sl~g~~~~~~~~l~~~~~~~~~F~G~Ar---eA~~~fP~NvNVaaa~aLAg~-G~--d~t~v~l~aD--P~~~~  216 (267)
T PRK13301        145 SRKPVAAWRAELPGMGIDPDTLAESRTLFSGPAR---EAALRFPKNLNVAATLALAGI-GM--TRTRVEVVVD--PRARG  216 (267)
T ss_pred             EecChhHhccChhhcccccccccCCeEEEEeCHH---HHHHHCCchHHHHHHHHHhcc-Cc--cceEEEEEEC--CCCCC
Confidence            22 431 2222             2    67777   444443332221100001100 10  0123333333  56655


Q ss_pred             -eEEEEEccCCcEEEEEEEe----CCccccHHHHHHHHHHhhc
Q 022250          251 -STTVYFSRPGEVYSIKHDI----TDVQSLMPGLILAIRKVVH  288 (300)
Q Consensus       251 -~H~V~f~~~~E~iel~H~a----~sR~~Fa~Gal~Aa~~l~~  288 (300)
                       .|+|..-|+.-+++++=+-    .|.+.-+--|+.+++-|.+
T Consensus       217 N~H~I~v~g~~g~~~~~~~n~p~~~NPkTS~laa~Svv~~l~~  259 (267)
T PRK13301        217 NQHRIQVRSPLGEMQIELVNAPSPANPKTSWLVAQSVLATIRR  259 (267)
T ss_pred             ceEEEEEEeeeEEEEEEEeCCcCCCCCchHHHHHHHHHHHHHh
Confidence             7999999999999888544    2334434455555555443

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=99.52  E-value=1.3e-12  Score=123.56  Aligned_cols=133  Identities=16%  Similarity=0.121  Sum_probs=103.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|+ |+||+.+++.+.+.|++||+|++|++.. ...+      ...++..+.|.++++      .++|||+.+|
T Consensus         3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~------~~~~v~~~~d~~e~l------~~iDVViIct   68 (324)
T TIGR01921         3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLD------TETPVYAVADDEKHL------DDVDVLILCM   68 (324)
T ss_pred             CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHh------hcCCccccCCHHHhc------cCCCEEEEcC
Confidence            699999998 9999999999999999999999997531 1111      123444445666665      4799999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCCC-C-CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH-HHHhcc
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-AISASF  181 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTTG-~-~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~-a~~~~~  181 (300)
                      ++..+.+.+..++++|+|||+..+- . .++..++|.++|++++.-.+++.-|..|..-+.++ .+.+.+
T Consensus        69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp  138 (324)
T TIGR01921        69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLP  138 (324)
T ss_pred             CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCC
Confidence            9999999999999999999998763 2 25678899999998766678889999998866654 444443

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK10206 putative oxidoreductase; Provisional

Probab=99.52  E-value=1.9e-13  Score=130.57  Aligned_cols=145  Identities=20%  Similarity=0.144  Sum_probs=111.9

Q ss_pred             cceEEEEcCCchHH-HHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCcCCCC-cceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIG-RAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG-~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |+||+|+|+ |.++ +.++..+.. .++++|++++|++.   +..+++   ..++ +++|+|++++++    +.++|+|+
T Consensus         1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~---~~~~~~---~~~~~~~~~~~~~ell~----~~~iD~V~   69 (344)
T PRK10206          1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHA---KPEEQA---PIYSHIHFTSDLDEVLN----DPDVKLVV   69 (344)
T ss_pred             CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCCh---hHHHHH---HhcCCCcccCCHHHHhc----CCCCCEEE
Confidence            589999998 9976 457776654 46899999999753   112222   2343 678999999997    36899999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEE
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI  188 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieI  188 (300)
                      ..|++..+.+++..|+++||||+|++| ..+.++.++|.++|+++++.+.+..|  |.....-++++.+.  +..-++--
T Consensus        70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~--g~iG~i~~  147 (344)
T PRK10206         70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE  147 (344)
T ss_pred             EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHc--CCCCCeEE
Confidence            999999999999999999999999999 78899999999999999999888877  55555556666543  22334444


Q ss_pred             EEcc
Q 022250          189 VESR  192 (300)
Q Consensus       189 iE~H  192 (300)
                      ++.|
T Consensus       148 i~~~  151 (344)
T PRK10206        148 VESH  151 (344)
T ss_pred             EEEE
Confidence            4543

>PRK08374 homoserine dehydrogenase; Provisional

Probab=99.43  E-value=1.2e-12  Score=125.02  Aligned_cols=142  Identities=14%  Similarity=0.140  Sum_probs=105.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc---------CCcEEEEEEecC-----CCCcchhhhhcCcCCCC-ccee-------
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPVM-------   91 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~g-v~v~-------   91 (300)
                      |++||+|+|+ |.+|+.+++.+.+.         -+++|+++.|+.     +.|-+...+.....+.+ +..+       
T Consensus         1 ~~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~   79 (336)
T PRK08374          1 MEVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVY   79 (336)
T ss_pred             CeeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhcccccccc
Confidence            5799999998 99999999987652         148899999853     23434333221111111 0011       


Q ss_pred             -cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                       .+++++++    +.++||+||||.++.+.++...++++|+|||++++|.-....++|.++++++++++++++|++.|+-
T Consensus        80 ~~~~~ell~----~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP  155 (336)
T PRK08374         80 NFSPEEIVE----EIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP  155 (336)
T ss_pred             CCCHHHHHh----cCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence             16778874    2579999999999999999999999999999999974334556889999999999999999999998


Q ss_pred             HHHHHHHHhc
Q 022250          171 LLQQAAISAS  180 (300)
Q Consensus       171 ll~~~a~~~~  180 (300)
                      ++.-+-..++
T Consensus       156 ii~~l~~~l~  165 (336)
T PRK08374        156 IIGLLRENLL  165 (336)
T ss_pred             chHHHHhhcc
Confidence            8766554443

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=99.43  E-value=1.9e-12  Score=123.79  Aligned_cols=131  Identities=15%  Similarity=0.152  Sum_probs=103.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ++||+|+|+  +||+.+++.+.+.+ +++|+|++|++.  +.+.+++   .++|++.|+|++++++    +.++|+|..-
T Consensus         3 ~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~----d~Di~~V~ip   71 (343)
T TIGR01761         3 VQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD----DIDIACVVVR   71 (343)
T ss_pred             CcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhc----CCCEEEEEeC
Confidence            589999997  68999999998887 899999999754  3334444   4678899999999995    2344444432


Q ss_pred             C--CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHH
Q 022250          114 T--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (300)
Q Consensus       114 T--~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~  178 (300)
                      |  ++..+.+.+..|+++||||+|++|=- .+|.++|.++|+++|+.+.+ ..|...+..+.++.+.
T Consensus        72 t~~P~~~H~e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~v-~~f~p~~~~vr~~i~~  136 (343)
T TIGR01761        72 SAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFIEY  136 (343)
T ss_pred             CCCCCccHHHHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEEE-EecCHHHHHHHHHHHc
Confidence            2  45788999999999999999999933 58899999999999998776 5678887777776544

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK06270 homoserine dehydrogenase; Provisional

Probab=99.40  E-value=2.2e-12  Score=123.33  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=104.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCcCCCCc-c------eec
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI-P------VMS   92 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~-----~~g~d~~~~~g~~~~~gv-~------v~~   92 (300)
                      |++||+|+|+ |.||+.+++.+.+.+         +++|++++|++     ..|.+..++.....+.+. .      .+.
T Consensus         1 m~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~   79 (341)
T PRK06270          1 MEMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEI   79 (341)
T ss_pred             CeEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccC
Confidence            5799999998 999999999987653         79999999953     233343332211122221 1      234


Q ss_pred             CHHHHHhcccccCCccEEEEcCCchh-----HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250           93 DLTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                      |++++++    +.++|||||+|++..     ..+++..|+++|+|||+++.+......++|.++|+++++.+.+-+...-
T Consensus        80 d~~ell~----~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~  155 (341)
T PRK06270         80 SGLEVIR----SVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGG  155 (341)
T ss_pred             CHHHHhh----ccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeee
Confidence            8899886    367999999997644     4889999999999999997766555678899999999999998777777


Q ss_pred             HHHHHHHHHHHhc
Q 022250          168 GSILLQQAAISAS  180 (300)
Q Consensus       168 Gv~ll~~~a~~~~  180 (300)
                      |.-++..+-+.+.
T Consensus       156 glPii~~l~~~l~  168 (341)
T PRK06270        156 AMPIINLAKETLA  168 (341)
T ss_pred             chhHHHHHHhhcc
Confidence            7766665554443

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.36  E-value=1.7e-11  Score=115.40  Aligned_cols=148  Identities=16%  Similarity=0.074  Sum_probs=117.3

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCC---cceecCHHHHHhcccccCC
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~  106 (300)
                      +++.+|+||+|| |+|++-.++++...|  +++++++.|+..  ..+.+++   +..+   .++|.++|+++.    +..
T Consensus         3 ~s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~--~~A~~fA---q~~~~~~~k~y~syEeLak----d~~   72 (351)
T KOG2741|consen    3 DSATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSL--ERAKEFA---QRHNIPNPKAYGSYEELAK----DPE   72 (351)
T ss_pred             CCceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccH--HHHHHHH---HhcCCCCCccccCHHHHhc----CCC
Confidence            345699999999 999999999998888  999999999853  4556666   3333   478999999997    477


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEc--CCCcHHHHHHHHHHHHhccCC
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIA--PTLSIGSILLQQAAISASFHY  183 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a--~N~SiGv~ll~~~a~~~~~~~  183 (300)
                      +|||+.-++...|++.+..++++||||++++| ..+.+|.++|.++|+++|+-++.+  +-|+.-+.-+..+..  .+.+
T Consensus        73 vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~--~~~~  150 (351)
T KOG2741|consen   73 VDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS--SGVL  150 (351)
T ss_pred             cCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh--cccc
Confidence            89998777888899999999999999999999 899999999999999998765532  344555545555554  3445


Q ss_pred             CCeEEEEc
Q 022250          184 KNVEIVES  191 (300)
Q Consensus       184 ~dieIiE~  191 (300)
                      -|+.-++.
T Consensus       151 Gdvk~v~~  158 (351)
T KOG2741|consen  151 GDVKSVEV  158 (351)
T ss_pred             ccceEEEE
Confidence            56666665

>PRK06349 homoserine dehydrogenase; Provisional

Probab=99.30  E-value=1.9e-11  Score=120.21  Aligned_cols=134  Identities=11%  Similarity=0.087  Sum_probs=104.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (300)
                      ++||+|+|+ |.||+.+++.+.+++         +++|++++|++..  .... .   ...+..+++|++++++    +.
T Consensus         3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~--~~~~-~---~~~~~~~~~d~~~ll~----d~   71 (426)
T PRK06349          3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE--KDRG-V---DLPGILLTTDPEELVN----DP   71 (426)
T ss_pred             eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh--hccC-C---CCcccceeCCHHHHhh----CC
Confidence            599999998 999999998886543         6899999997531  1110 1   1234567899999996    36


Q ss_pred             CccEEEEcCCc-hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       106 ~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      ++|+|||.|.+ +.+.++++.|+++|||||+....+..++.++|.++|+++++.+.+-+...-|.-++..+-+.+
T Consensus        72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l  146 (426)
T PRK06349         72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGL  146 (426)
T ss_pred             CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhc
Confidence            78999999854 677999999999999999987777778889999999999999998877666665555444333

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=99.25  E-value=7e-10  Score=100.57  Aligned_cols=185  Identities=16%  Similarity=0.162  Sum_probs=123.4

Q ss_pred             CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250           60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus        60 ~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      +++|++++|+..  ..+.+++   ..+|+++|+|++++++     .++|+|+++|++..|.+++..++++|+|++|.++|
T Consensus         1 ~~eLvaV~D~~~--e~a~~~a---~~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g   70 (229)
T TIGR03855         1 NFEIAAVYDRNP--KDAKELA---ERCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG   70 (229)
T ss_pred             CeEEEEEECCCH--HHHHHHH---HHhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence            478999999753  2333333   3567889999999986     57999999999999999999999999999999996


Q ss_pred             -C-CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhc-cCCCCeEEEEc-cC--CCCC--CC----chHHHHHH
Q 022250          140 -I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS-FHYKNVEIVES-RP--NARD--FP----SPDATQIA  207 (300)
Q Consensus       140 -~-~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~-~~~~dieIiE~-Hh--~K~D--aP----SGTA~~l~  207 (300)
                       + +.++.++|.++++++|.++++.+++--|...+    +... .....+.++=. |.  .|.+  -|    +|||.   
T Consensus        71 Alad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~l----~a~~ig~~~~V~i~~~k~p~~~~~~~~~~~~~f~G~a~---  143 (229)
T TIGR03855        71 ALADRELRERLREVARSSGRKVYIPSGAIGGLDAL----KAASLGRIERVVLTTTKPPASLGRDIKEPTTIFEGSAS---  143 (229)
T ss_pred             ccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHHH----HhcccCCceEEEEEEecChHHhcCCCCCCEEEEEecHH---
Confidence             5 56788999999999999999987554443333    2221 11234444333 43  2432  23    89998   


Q ss_pred             HHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCe-eEEEEEccCCcEEEEEEE
Q 022250          208 NNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-STTVYFSRPGEVYSIKHD  268 (300)
Q Consensus       208 ~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg-~H~V~f~~~~E~iel~H~  268 (300)
                      |++..++++.+..-...+  +.|-   +..+.+-+.  |++.+ .|+|..-|++.+++++=+
T Consensus       144 ea~~~fP~n~Nva~a~al--A~g~---d~~v~i~ad--p~~~~n~h~i~~~g~~g~~~~~~~  198 (229)
T TIGR03855       144 EAIKLFPANINVAATLSL--AAGF---DAKVEIVAD--PEADRNIHEIFVESDFGEMEIRVE  198 (229)
T ss_pred             HHHHHCCchHHHHHHHHH--hcCC---CcEEEEEEc--CCCCCcEEEEEEEeccEEEEEEEe
Confidence            454444433221111111  1121   123333333  45555 799999999999999844

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=99.23  E-value=1.7e-11  Score=99.25  Aligned_cols=110  Identities=17%  Similarity=0.211  Sum_probs=83.1

Q ss_pred             cCCchHHHHHHHHHHhcC---CcEEEEEEecCC-CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCch
Q 022250           42 GAVKEIGRAAVIAVTKAR---GMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (300)
Q Consensus        42 Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~-~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~  117 (300)
                      |+ |.||+.+++.+.+.+   +++++++++++. ...+....     ..+...+++++++++.    .++|+|||+|.++
T Consensus         1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~   70 (117)
T PF03447_consen    1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----FPDEAFTTDLEELIDD----PDIDVVVECTSSE   70 (117)
T ss_dssp             ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----HTHSCEESSHHHHHTH----TT-SEEEE-SSCH
T ss_pred             CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----cccccccCCHHHHhcC----cCCCEEEECCCch
Confidence            77 999999999998876   899999999761 11111111     1245678899999852    4799999999999


Q ss_pred             hHHHHHHHHHHcCCCEEEeCCCC--CHHHHHHHHHHhhhCCCeEEE
Q 022250          118 TVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus       118 ~~~~~~~~al~~G~~vVigTTG~--~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      ...+++..++++|++||+...+.  +....++|.++|+++|+.+.|
T Consensus        71 ~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~  116 (117)
T PF03447_consen   71 AVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY  116 (117)
T ss_dssp             HHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred             HHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence            99999999999999999987753  336789999999999988765

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=99.22  E-value=2e-10  Score=102.65  Aligned_cols=128  Identities=18%  Similarity=0.214  Sum_probs=101.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++|+|+|| |.+|+.+.+.+... -++|++.++|+..  +++.++.   ...+.+..++++++++      .+|++|++.
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~---~~~~~~~~s~ide~~~------~~DlvVEaA   68 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELE---ASVGRRCVSDIDELIA------EVDLVVEAA   68 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHH---hhcCCCccccHHHHhh------ccceeeeeC
Confidence            58999999 99999999999865 3699999999764  3333333   2233334489999984      899999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCCC-CCH-HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVPH-IQL-ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTTG-~~~-e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a  176 (300)
                      +|+++.+++..++++|+++++-++| |.+ +-.+++.++|+..+.. ++.|.-.+|..-....+
T Consensus        69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~r-v~~pSGAiGGlD~l~aa  131 (255)
T COG1712          69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGAR-VYLPSGAIGGLDALAAA  131 (255)
T ss_pred             CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcE-EEecCccchhHHHHHHh
Confidence            9999999999999999999999997 554 4567899999988765 66788888875544444

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=99.17  E-value=7.8e-10  Score=118.19  Aligned_cols=146  Identities=18%  Similarity=0.132  Sum_probs=113.3

Q ss_pred             eeeEeecCCCC--CcceEEEEcCCchHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhhcCcCCC-C
Q 022250           23 RFISCSTNPPQ--SNIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDMEQPL-E   87 (300)
Q Consensus        23 ~~~~~~~~~~~--~~ikV~V~Ga~GrMG~~i~~~i~~~~~~e------------Lvg~vd~~~~g~d~~~~~g~~~~~-g   87 (300)
                      -...|.+....  .|.||+|+|| |+||+.+++.+.+.++.+            +|.+.|...  .++..++.   .+ +
T Consensus       555 ~~~~~~~~~~~~~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~---~~~~  628 (1042)
T PLN02819        555 QENECNEKAEVTKKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVE---GIEN  628 (1042)
T ss_pred             ccccccccccccccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHH---hcCC
Confidence            44556666543  2679999998 999999999999888877            788888653  33333331   12 3


Q ss_pred             ---cce-ecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250           88 ---IPV-MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus        88 ---v~v-~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                         +.+ +.|.+++.+.+   .++|+||..+++..+.+.++.|+++|+|+|+.+  ++.++..+|.+.|+++|+.++..-
T Consensus       629 ~~~v~lDv~D~e~L~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~  703 (1042)
T PLN02819        629 AEAVQLDVSDSESLLKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEM  703 (1042)
T ss_pred             CceEEeecCCHHHHHHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECC
Confidence               344 56777776411   369999999999999999999999999999887  777888999999999999999999


Q ss_pred             CCcHHHHH--HHHHHHHh
Q 022250          164 TLSIGSIL--LQQAAISA  179 (300)
Q Consensus       164 N~SiGv~l--l~~~a~~~  179 (300)
                      +|..|+.-  .+++....
T Consensus       704 GlDPGid~~lA~~~Id~~  721 (1042)
T PLN02819        704 GLDPGIDHMMAMKMIDDA  721 (1042)
T ss_pred             ccCHHHHHHHHHHHHHhh
Confidence            99999985  45666554

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.14  E-value=2e-10  Score=109.84  Aligned_cols=96  Identities=23%  Similarity=0.264  Sum_probs=75.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh---hcCc------------CCCCcceecCHHHHHh
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV---CDME------------QPLEIPVMSDLTMVLG   99 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~---~g~~------------~~~gv~v~~dl~~~l~   99 (300)
                      |+||+|+|+ |+|||.+++++.+++++||+++.|...  .....+   .|+.            ...+++++.++++++.
T Consensus         1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~--~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~   77 (341)
T PRK04207          1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKP--DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE   77 (341)
T ss_pred             CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCCh--HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence            689999999 999999999999999999999998542  100000   0110            1235777888888873


Q ss_pred             cccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                            ++|+|+|||.+..+.+++..++++|+++|+-.+.
T Consensus        78 ------~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~  111 (341)
T PRK04207         78 ------KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGE  111 (341)
T ss_pred             ------cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCC
Confidence                  7999999999999999999999999999986653

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=99.10  E-value=6.3e-10  Score=103.89  Aligned_cols=131  Identities=15%  Similarity=0.207  Sum_probs=93.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~-~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ++||+|+|+ |+||+.++..+.+.+++++++++|.+..  ..+ .++   ..+|++. +++++++++    +.++|+|++
T Consensus         1 klrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~e--s~~la~A---~~~Gi~~~~~~~e~ll~----~~dIDaV~i   70 (285)
T TIGR03215         1 KVKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPE--SDGLARA---RELGVKTSAEGVDGLLA----NPDIDIVFD   70 (285)
T ss_pred             CcEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcc--cHHHHHH---HHCCCCEEECCHHHHhc----CCCCCEEEE
Confidence            479999997 9999999888887899999999997541  111 222   3577775 468999986    357999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCC----HHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQ----LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~----~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~  177 (300)
                      +|++..|.+++..++++|++|++.|+-+.    ..... +++..+..++.++-.+|-+ .+-++.-+.+
T Consensus        71 aTp~~~H~e~a~~al~aGk~VIdekPa~~~plvvp~VN-~~~~~~~~~~~iv~c~~~a-tip~~~al~r  137 (285)
T TIGR03215        71 ATSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVN-LDEHLDAPNVNMVTCGGQA-TIPIVAAISR  137 (285)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEECCccccCCccCCCcC-HHHHhcCcCCCEEEcCcHH-HHHHHHHHHH
Confidence            99999999999999999999999998541    11111 3333343446666666655 3334333333

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=99.08  E-value=1.5e-09  Score=101.94  Aligned_cols=149  Identities=15%  Similarity=0.189  Sum_probs=103.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhccccc---CCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQS---KARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~---~~~DVV  110 (300)
                      ++||+|+|+ |++|+.+...+.+.++++|++++|.+.. .+...++   .++|++. +++++++++    .   .++|+|
T Consensus         4 klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~e-s~gla~A---~~~Gi~~~~~~ie~LL~----~~~~~dIDiV   74 (302)
T PRK08300          4 KLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPE-SDGLARA---RRLGVATSAEGIDGLLA----MPEFDDIDIV   74 (302)
T ss_pred             CCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChh-hHHHHHH---HHcCCCcccCCHHHHHh----CcCCCCCCEE
Confidence            699999996 9999999988888899999999987531 1111222   3578887 589999996    2   468999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCCCC---------CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHI---------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF  181 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~---------~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~  181 (300)
                      +|+|++..+.+++..++++|++++..|+-+         +.+      ++....++.++-.||=+.     ..++..+.+
T Consensus        75 f~AT~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~------~~~~~~~~~iia~p~~at-----i~~v~Al~~  143 (302)
T PRK08300         75 FDATSAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLD------EHLDAPNVNMVTCGGQAT-----IPIVAAVSR  143 (302)
T ss_pred             EECCCHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHH------HHhcccCCCEEECccHHH-----HHHHHHhcc
Confidence            999999999999999999999999999855         332      223334567776666443     222333333


Q ss_pred             CCCCeEEEEccC--CCCCCCchHHH
Q 022250          182 HYKNVEIVESRP--NARDFPSPDAT  204 (300)
Q Consensus       182 ~~~dieIiE~Hh--~K~DaPSGTA~  204 (300)
                       ..++++-|...  .-+-+..||=.
T Consensus       144 -v~~~~~~eIvat~~s~s~g~gtr~  167 (302)
T PRK08300        144 -VAPVHYAEIVASIASKSAGPGTRA  167 (302)
T ss_pred             -cCcCceeeeeeeehhhccCCcccc
Confidence             23445556543  33334556433

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=98.99  E-value=1.1e-08  Score=94.01  Aligned_cols=126  Identities=19%  Similarity=0.248  Sum_probs=102.2

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VV  110 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VV  110 (300)
                      |.|+|.+.|. |..|...++.+.++|+++|||++++  .+.|+|+++++|.. ++||...++++..++     ..+| ++
T Consensus         1 m~~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlA-----tl~~~~~   73 (350)
T COG3804           1 MSLRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLA-----TLADAVI   73 (350)
T ss_pred             CCceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeeccccccee-----cccccee
Confidence            5689999995 9999999999999999999999996  35899999999984 699999999999887     3444 45


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCC------CCCHHHHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTT------G~~~e~~~~L~~~a~~~~i~iv~a~N~SiG  168 (300)
                      .+--.|+  .+....++.+|+|||+--+      +..+|..+++.++|.++|..-++..-.-.|
T Consensus        74 y~~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~pG  135 (350)
T COG3804          74 YAPLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIGPG  135 (350)
T ss_pred             eecccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEecccCcc
Confidence            4444553  8888999999999996522      345778888999999999877876665555

>PRK06392 homoserine dehydrogenase; Provisional

Probab=98.94  E-value=1.3e-08  Score=96.90  Aligned_cols=134  Identities=19%  Similarity=0.178  Sum_probs=98.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhhcCcCC--CCcceec--CHHHHHh
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQP--LEIPVMS--DLTMVLG   99 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-------~~~eLvg~vd~~-----~~g~d~~~~~g~~~~--~gv~v~~--dl~~~l~   99 (300)
                      |||+|+|+ |.+|+.+++.+.+.       .+++++++.|+.     ..|-|..++.....+  ......+  +++++++
T Consensus         1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~   79 (326)
T PRK06392          1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE   79 (326)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence            58999998 99999999998764       578999999853     234444333211011  0011112  6777775


Q ss_pred             cccccCCccEEEEcCCc-h---hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH
Q 022250          100 SISQSKARAVVIDFTDA-S---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p-~---~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~  175 (300)
                           .++||+||+|.. +   ...++++.++++|+|||+..-+.-....++|.++|+++++.+.|.++..=|.-++.-+
T Consensus        80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~  154 (326)
T PRK06392         80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR  154 (326)
T ss_pred             -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence                 589999999952 1   2578889999999999987766444677899999999999999999888888777644

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.81  E-value=1.9e-08  Score=95.02  Aligned_cols=123  Identities=20%  Similarity=0.203  Sum_probs=88.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCc-----------------CCCCcceecCHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-----------------QPLEIPVMSDLTM   96 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~-----------------~~~gv~v~~dl~~   96 (300)
                      ++||+++|+ |.||+-++..+...|+++++++-|.+. ..+++-+-+|++                 +...+.+++|.+.
T Consensus        17 PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~   95 (438)
T COG4091          17 PIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAEL   95 (438)
T ss_pred             ceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhh
Confidence            599999998 999999999999999999999988532 112222222221                 1234567788888


Q ss_pred             HHhcccccCCccEEEEcC-CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250           97 VLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      ++..    ...|||||.| .|+.-.++...|+.||||+|+-.--.+----.-|++.|.+  ..++||..
T Consensus        96 i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~--~GviyS~~  158 (438)
T COG4091          96 IIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADA--AGVIYSGG  158 (438)
T ss_pred             hhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhh--cCeEEecc
Confidence            8874    6789999999 7999999999999999999986432211111346777888  56677543

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=98.78  E-value=3.8e-08  Score=94.31  Aligned_cols=102  Identities=19%  Similarity=0.105  Sum_probs=74.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ||+||+|+|+||.+|+.+++.+.+.|+++|+++.++...++.+.+..+.....-...++++++...     .++|+|+.+
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~vD~Vf~a   75 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-----AGADVVFLA   75 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-----cCCCEEEEC
Confidence            579999999999999999999999999999999985444444332211000000113445544322     479999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      +++..+.+.+..++++|++||--+..|
T Consensus        76 lP~~~~~~~v~~a~~aG~~VID~S~~f  102 (343)
T PRK00436         76 LPHGVSMDLAPQLLEAGVKVIDLSADF  102 (343)
T ss_pred             CCcHHHHHHHHHHHhCCCEEEECCccc
Confidence            999999999999999999999766654

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=98.74  E-value=1.5e-07  Score=88.95  Aligned_cols=122  Identities=16%  Similarity=0.214  Sum_probs=97.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..||.|.|.||+-|+.|.+...+ -+..+|+.+.+..-|....       ..|+|+|++++++.+.    ..+|++|.|.
T Consensus        29 ~t~v~vqGitg~~g~~h~~~~~~-ygt~iv~GV~Pgkgg~~v~-------~~Gvpvy~sv~ea~~~----~~~D~avI~V   96 (317)
T PTZ00187         29 NTKVICQGITGKQGTFHTEQAIE-YGTKMVGGVNPKKAGTTHL-------KHGLPVFATVKEAKKA----TGADASVIYV   96 (317)
T ss_pred             CCeEEEecCCChHHHHHHHHHHH-hCCcEEEEECCCCCCceEe-------cCCccccCCHHHHhcc----cCCCEEEEec
Confidence            47999999999999999998875 4889999998765333221       1389999999999852    3499999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhh-hCCCeEEEcCCCcHHHH
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCD-KASMGCLIAPTLSIGSI  170 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~-~~~i~iv~a~N~SiGv~  170 (300)
                      +|..+.+.++.|.++|++.++--| |+.+.+..+++++++ ++++ .++.|| ++|+.
T Consensus        97 Pa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~-rliGPN-c~Gii  152 (317)
T PTZ00187         97 PPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKT-RLIGPN-CPGII  152 (317)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCC-EEECCC-CceEE
Confidence            999999999999999999976655 898766666777764 4665 488999 66753

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=98.73  E-value=1.9e-07  Score=87.90  Aligned_cols=120  Identities=18%  Similarity=0.245  Sum_probs=94.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .-||.|.|.||+-|+.+.+...+. +..+++.+++..-+   .      .-.|+|+|.+++++.+.    .++|++|.+.
T Consensus        12 ~~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~---~------~i~G~~~y~sv~dlp~~----~~~DlAvI~v   77 (300)
T PLN00125         12 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---T------EHLGLPVFNTVAEAKAE----TKANASVIYV   77 (300)
T ss_pred             CCeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCC---c------eEcCeeccCCHHHHhhc----cCCCEEEEec
Confidence            369999999999999999987765 88999999875211   1      23578999999999741    1379999999


Q ss_pred             CchhHHHHHHHHHHcCCCEE-EeCCCCCHHH-HHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          115 DASTVYDNVKQATAFGMRSV-VYVPHIQLET-VSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vV-igTTG~~~e~-~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      +++.+.+.++.|.++|++.+ |-|.||.+.. .+++.++++++++. ++.|| ++|+.
T Consensus        78 Pa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~gir-viGPN-c~Gii  133 (300)
T PLN00125         78 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTR-LIGPN-CPGII  133 (300)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCE-EECCC-Cceee
Confidence            99999999999999999854 6666997653 45566778988876 77898 66643

>PRK06813 homoserine dehydrogenase; Validated

Probab=98.73  E-value=1.4e-07  Score=90.46  Aligned_cols=138  Identities=14%  Similarity=0.116  Sum_probs=94.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc---------CCcEEEEEEecCC-----CCcchhhhhcCcC-CCCc--ceecCHHH
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTM   96 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~-----~g~d~~~~~g~~~-~~gv--~v~~dl~~   96 (300)
                      |+++|+|+|+ |.+|+.+++.+.+.         -+++|+++.++..     .|-+...+..... ....  ....+.++
T Consensus         1 ~~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~   79 (346)
T PRK06813          1 MKIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEE   79 (346)
T ss_pred             CeeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHH
Confidence            4799999998 99999999998653         2578999988532     1222222110000 0000  01122333


Q ss_pred             HHhcccccCCccEEEEcCCc-----hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250           97 VLGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p-----~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l  171 (300)
                      .+..   ..+.|||||+|..     +...++++.++++|+|||...-+.-....++|.++|+++++.+.|-++..=|+-+
T Consensus        80 ~~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPi  156 (346)
T PRK06813         80 RATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPT  156 (346)
T ss_pred             HhcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccch
Confidence            3320   1258999999864     5678899999999999997766554556788999999999999999998888877


Q ss_pred             HHHH
Q 022250          172 LQQA  175 (300)
Q Consensus       172 l~~~  175 (300)
                      +.-+
T Consensus       157 I~~l  160 (346)
T PRK06813        157 LDIG  160 (346)
T ss_pred             HHHH
Confidence            7665

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.72  E-value=1.4e-07  Score=76.87  Aligned_cols=97  Identities=15%  Similarity=0.174  Sum_probs=72.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCcC-CCCcceec-CHHHHHhcccccCCccEEEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQ-PLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~~-~~gv~v~~-dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ||+|+|+||.+|+.+++.+.++|+++++.++.++. .|+.......... .....+.+ +.+++       .++|+|+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-------SDVDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-------TTESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-------hcCCEEEec
Confidence            79999999999999999999999999999999876 7777665432100 01223333 33333       489999989


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      ++.....+....+++.|+.||--++.+
T Consensus        74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   74 LPHGASKELAPKLLKAGIKVIDLSGDF  100 (121)
T ss_dssp             SCHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred             CchhHHHHHHHHHhhCCcEEEeCCHHH
Confidence            888899999999999999777555444

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.70  E-value=6.3e-08  Score=93.82  Aligned_cols=135  Identities=16%  Similarity=0.130  Sum_probs=93.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCc-CC--CCcceecCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-QP--LEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~-~~--~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      |+||.|+|| |++|+.++..++++.+.++.. .|++. ...++....+.. +.  ..+.-.+.+.++++      +.|+|
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~i-AdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~V   72 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTI-ADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLV   72 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEE-EeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEE
Confidence            689999999 999999999998888777764 44432 111111111000 01  11112245667774      56999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH-H-HHHHHHHh
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-L-LQQAAISA  179 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~-l-l~~~a~~~  179 (300)
                      |.+-+|......++.|+++|+++|-  |...++...++.+.|+++|+.++...-|+.|+. + ..++++.+
T Consensus        73 In~~p~~~~~~i~ka~i~~gv~yvD--ts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~  141 (389)
T COG1748          73 INAAPPFVDLTILKACIKTGVDYVD--TSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKEL  141 (389)
T ss_pred             EEeCCchhhHHHHHHHHHhCCCEEE--cccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHh
Confidence            9999999999999999999999995  333222237899999999999999999999975 2 23444444

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=98.69  E-value=1.2e-07  Score=87.37  Aligned_cols=115  Identities=19%  Similarity=0.324  Sum_probs=98.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..||.|-|.+|++|+.+.+..++. +..+|+.+.+.+-|..         -.++|+|++++|++++    ..+|+.+.|-
T Consensus         8 ~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~V   73 (293)
T COG0074           8 DTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIFV   73 (293)
T ss_pred             CCeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEec
Confidence            378999999999999999999877 9999999987654433         2468999999999984    5899999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      +|..+.+.+..|+++|+++|+.-| |....+.-++.+.+++.++ .++.||
T Consensus        74 p~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~-~iiGPn  123 (293)
T COG0074          74 PPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGT-RLIGPN  123 (293)
T ss_pred             CcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCC-EEECCC
Confidence            999999999999999999887766 8888778889999998884 577777

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=98.65  E-value=5.1e-07  Score=84.51  Aligned_cols=118  Identities=18%  Similarity=0.306  Sum_probs=95.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccC-CccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK-ARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~-~~DVVIDf  113 (300)
                      ..||.|.|.||++|+.+.+.+... ++.+++.+.+...+   .      .-.|++.|.+++++-+     . ++|++|.+
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~~~---~------~v~G~~~y~sv~dlp~-----~~~~Dlavi~   70 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGKGG---T------TVLGLPVFDSVKEAVE-----ETGANASVIF   70 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCCCc---c------eecCeeccCCHHHHhh-----ccCCCEEEEe
Confidence            478999999999999999988754 66688878764211   1      2358899999999874     2 38999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEE-EeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          114 TDASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV-igTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      .+++.+.+.++.|.+.|++.+ |-|.||.+...++|.+.|+++++. ++.|| ++|+
T Consensus        71 vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gir-ilGPN-c~Gi  125 (286)
T TIGR01019        71 VPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTR-LIGPN-CPGI  125 (286)
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EECCC-CceE
Confidence            999999999999999998665 556799876568899999999987 77888 5564

ATP citrate lyases appear to form an outgroup.

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=98.60  E-value=8e-07  Score=83.37  Aligned_cols=117  Identities=19%  Similarity=0.300  Sum_probs=92.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC--ccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA--RAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~--~DVVID  112 (300)
                      +.||.|+|.+|++|+.+.+.+.+. +++.+..+.+.. +  ..      .-.|++.|.+++++-+      .  +|++|.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~-~--~~------~v~G~~~y~sv~dlp~------~~~~DlAvi   71 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGK-G--GT------TVLGLPVFNTVAEAVE------ATGANASVI   71 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCC-C--CC------eEeCeeccCCHHHHhh------ccCCCEEEE
Confidence            579999999999999999999864 454555565431 0  11      2357899999999974      4  899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCE-EEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~v-VigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      +.+++.+.+.++.|.+.|++. ||-|.||..++.++|.+.|+++++. ++.|| ++|+
T Consensus        72 ~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gir-vlGPN-c~Gi  127 (291)
T PRK05678         72 YVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTR-LIGPN-CPGI  127 (291)
T ss_pred             EcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EECCC-CCcc
Confidence            999999999999999999876 4556799876567899999999987 77899 5564

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.54  E-value=7.3e-07  Score=86.23  Aligned_cols=132  Identities=17%  Similarity=0.141  Sum_probs=87.8

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-------ecCHHHHHhcccccCCccEE
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~DVV  110 (300)
                      |+|+|+ |.||+.+++.+.+..+.+=+.+.|++.  ..+..++.......+..       .+++++++      .+.|+|
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~------~~~dvV   71 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELL------RGCDVV   71 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHH------TTSSEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHH------hcCCEE
Confidence            789999 999999999999888774444566542  22222221000011111       12355566      367999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH--HHHHHHHHhc
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISAS  180 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~--ll~~~a~~~~  180 (300)
                      |++..|......++.|+++|+|.|-  |.+-.++..++.+.++++++.++.+.-|..|..  +...+++.+.
T Consensus        72 in~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~  141 (386)
T PF03435_consen   72 INCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELD  141 (386)
T ss_dssp             EE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred             EECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence            9999999889999999999999998  544345678899999999999999999999976  2355666665

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=98.49  E-value=9.4e-07  Score=69.31  Aligned_cols=90  Identities=23%  Similarity=0.310  Sum_probs=71.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      +.||+|+|+ |++|++++.......++++++++|.++  ...++     .-.|+|+|++++++.+.    .++|+.|-+.
T Consensus         3 ~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~--~~~G~-----~i~gipV~~~~~~l~~~----~~i~iaii~V   70 (96)
T PF02629_consen    3 KTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDP--EKIGK-----EIGGIPVYGSMDELEEF----IEIDIAIITV   70 (96)
T ss_dssp             TEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECT--TTTTS-----EETTEEEESSHHHHHHH----CTTSEEEEES
T ss_pred             CCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCC--CccCc-----EECCEEeeccHHHhhhh----hCCCEEEEEc
Confidence            478999998 999999886667778999999999654  22222     23489999999999863    2499999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEe
Q 022250          115 DASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVig  136 (300)
                      +++.+.+.+..++++|+..|+-
T Consensus        71 P~~~a~~~~~~~~~~gIk~i~n   92 (96)
T PF02629_consen   71 PAEAAQEVADELVEAGIKGIVN   92 (96)
T ss_dssp             -HHHHHHHHHHHHHTT-SEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999887754

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.45  E-value=1.8e-06  Score=82.08  Aligned_cols=134  Identities=16%  Similarity=0.118  Sum_probs=95.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc---------CCcEEEEEEecCC--C-CcchhhhhcCcCCCCcceecCH-----HH
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHS--V-GEDIGMVCDMEQPLEIPVMSDL-----TM   96 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~--~-g~d~~~~~g~~~~~gv~v~~dl-----~~   96 (300)
                      |++||+|+|. |.+|+.+++.+.+.         .+++++++.+++.  . +.+..       +. -...++.     .+
T Consensus         2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~   72 (333)
T COG0460           2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLL-------NA-EVWTTDGALSLGDE   72 (333)
T ss_pred             ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccccccc-------ch-hhheecccccccHh
Confidence            5699999997 99999999998764         3678899988642  1 11111       10 1223343     34


Q ss_pred             HHhcccccCCccEEEEcCCc--hhH--HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250           97 VLGSISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p--~~~--~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll  172 (300)
                      ++.    ..+.|+||+.+..  +..  .+++..++++|+|||..--..-.....+|.++|+++|+.+.|=++-.=|+-++
T Consensus        73 ~~~----~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI  148 (333)
T COG0460          73 VLL----DEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPII  148 (333)
T ss_pred             hhc----cccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchH
Confidence            443    3688999997743  333  48999999999999976556555678999999999999999988877777665


Q ss_pred             HHHHHHhc
Q 022250          173 QQAAISAS  180 (300)
Q Consensus       173 ~~~a~~~~  180 (300)
                      .-+-..++
T Consensus       149 ~~lr~~l~  156 (333)
T COG0460         149 KLLRELLA  156 (333)
T ss_pred             HHHHhhcc
Confidence            54444443

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.44  E-value=1.7e-06  Score=81.67  Aligned_cols=205  Identities=19%  Similarity=0.117  Sum_probs=118.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCC-------Ccc--hhhhhcC---c------CCCCcceecCHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSV-------GED--IGMVCDM---E------QPLEIPVMSDLT   95 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~-------g~d--~~~~~g~---~------~~~gv~v~~dl~   95 (300)
                      |+||+|+|+ ||+||.+++++.+++ ++|+||+-|....       -.|  -+.+.+-   .      ...+++++...+
T Consensus         1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~   79 (335)
T COG0057           1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD   79 (335)
T ss_pred             CcEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence            589999998 999999999999988 7999999882100       000  0111110   0      123567765555


Q ss_pred             -HHHhcccccCCccEEEEcCCchhHHHHHHHHHHcC--CCEEEeCCCCCH-HH-----HHHHHHHhhhCCCeEEEcCCCc
Q 022250           96 -MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPHIQL-ET-----VSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus        96 -~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G--~~vVigTTG~~~-e~-----~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                       +.|.-  .+...|+|||+|.--...+++..-+++|  +.|+++-|+-++ ..     -....+. .+     -+-+|-|
T Consensus        80 p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~-~~-----~iVsnaS  151 (335)
T COG0057          80 PANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDA-GH-----TIVSNAS  151 (335)
T ss_pred             hHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCC-CC-----cEEEEcc
Confidence             55431  1235789999998777888888878776  777777665431 00     0001111 12     2336778


Q ss_pred             HHHHHHHHHHHHhccCCCCeE---EEEccC----C-CCCCCchHHHHHHHHHHhcCCccccCcccccccccccccc--CC
Q 022250          167 IGSILLQQAAISASFHYKNVE---IVESRP----N-ARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLG--ED  236 (300)
Q Consensus       167 iGv~ll~~~a~~~~~~~~die---IiE~Hh----~-K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~--~~  236 (300)
                      ---|=|..+++.+... |.||   ++=.|.    + -+|.|+-- ++-++++....-. .   .++....-+-++.  ++
T Consensus       152 CTTNcLap~~kvl~d~-fGI~~g~mTtVh~~T~dQ~~~dgph~~-~rr~raa~~niIp-~---sTgaAkav~~VlP~L~g  225 (335)
T COG0057         152 CTTNCLAPVAKVLNDA-FGIEKGLMTTVHAYTNDQKLVDGPHKD-LRRARAAALNIIP-T---STGAAKAVGLVLPELKG  225 (335)
T ss_pred             chhhhhHHHHHHHHHh-cCeeEEEEEEEEcccCCCccccCcccc-hhhhccccCCCCc-C---CCcchhhhhhhCcccCC
Confidence            8888888888887643 4554   233373    2 48888655 5555554331100 0   0000000111111  24


Q ss_pred             CeeEEEEEcCCCCe-eEEE
Q 022250          237 GVRVHSMVLPGLPS-STTV  254 (300)
Q Consensus       237 ~i~i~s~R~g~ivg-~H~V  254 (300)
                      .+.-+|+|.|..-+ -|.+
T Consensus       226 Kl~g~A~RVPt~~vs~~dl  244 (335)
T COG0057         226 KLTGMAIRVPTPNVSVVDL  244 (335)
T ss_pred             ceeeEEEEecCCCcEEEEE
Confidence            57788999998766 4433

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=98.42  E-value=2.1e-06  Score=69.78  Aligned_cols=110  Identities=20%  Similarity=0.318  Sum_probs=76.5

Q ss_pred             eEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      +|+|+|++   ++.|..+.+.+.+ .++++..+ ++..     ++      -.|.+.|.++++. .     .++|+++-|
T Consensus         2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~~-----~~------i~G~~~y~sl~e~-p-----~~iDlavv~   62 (116)
T PF13380_consen    2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPKG-----GE------ILGIKCYPSLAEI-P-----EPIDLAVVC   62 (116)
T ss_dssp             EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STTC-----SE------ETTEE-BSSGGGC-S-----ST-SEEEE-
T ss_pred             EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCCc-----eE------ECcEEeeccccCC-C-----CCCCEEEEE
Confidence            69999976   8899999999987 77888864 3321     22      2467889999983 3     589999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      ++|+...+.++.|.+.|+.-|+-.+|-   ..+++.++++++++. ++.|| ++|+.
T Consensus        63 ~~~~~~~~~v~~~~~~g~~~v~~~~g~---~~~~~~~~a~~~gi~-vigp~-C~gv~  114 (116)
T PF13380_consen   63 VPPDKVPEIVDEAAALGVKAVWLQPGA---ESEELIEAAREAGIR-VIGPN-CLGVV  114 (116)
T ss_dssp             S-HHHHHHHHHHHHHHT-SEEEE-TTS-----HHHHHHHHHTT-E-EEESS--HHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEEcch---HHHHHHHHHHHcCCE-EEeCC-cceEE
Confidence            999999999999999999999988883   335688889998887 44455 66653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.41  E-value=2.1e-06  Score=73.53  Aligned_cols=114  Identities=19%  Similarity=0.143  Sum_probs=76.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |+||+++|. |+||+.+++.+.+ .++++. ++|++.  .....+.    +.++...+++.++.+      .+|+|+-+.
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAK-AGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHH-TTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred             CCEEEEEch-HHHHHHHHHHHHh-cCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence            689999997 9999999999874 588876 578653  2233333    346788899999985      679998775


Q ss_pred             Cc-hhHHHHHHH--HHH--cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          115 DA-STVYDNVKQ--ATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       115 ~p-~~~~~~~~~--al~--~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      +. +++.+.+..  .+.  ..-.+++-++..++++..++.+.+++.|+..+=+|
T Consensus        66 ~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap  119 (163)
T PF03446_consen   66 PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP  119 (163)
T ss_dssp             SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence            54 555565554  333  22345566677778888899999888887766655

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.34  E-value=2.8e-06  Score=81.60  Aligned_cols=98  Identities=17%  Similarity=0.182  Sum_probs=70.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCc-----CC--CCccee-cCHHHHHhccccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDME-----QP--LEIPVM-SDLTMVLGSISQS  104 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~~~~~g~~-----~~--~gv~v~-~dl~~~l~~~~~~  104 (300)
                      ||+||+|+|++|.+|+.+++.+.++|+++|+++ .+....|+....+....     ..  ..+.+. .+.+++       
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------   74 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-------   74 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-------
Confidence            579999999999999999999999999999998 44444565554322110     00  112222 244433       


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      .++|+|+++++.....+++..+.++|+.+|.-+.
T Consensus        75 ~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~  108 (349)
T PRK08664         75 DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNAS  108 (349)
T ss_pred             cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCc
Confidence            3689999888888889999999999999887654

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.31  E-value=8.9e-06  Score=73.53  Aligned_cols=122  Identities=11%  Similarity=0.051  Sum_probs=75.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ++||+|+|+ |+||+.+++.+....  +.+-+-+++++. .+....+.   .++++.+++|++++++      ++|+||.
T Consensus         4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~DiVii   72 (245)
T PRK07634          4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQ---ARYNVSTTTDWKQHVT------SVDTIVL   72 (245)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHH---HHcCcEEeCChHHHHh------cCCEEEE
Confidence            489999998 999999999887543  344233344321 01223332   2456777888988884      7899999


Q ss_pred             cCCchhHHHHHHHHHH--cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       113 fT~p~~~~~~~~~al~--~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      .++|..+.+.+.....  .+..+|.-+-|++.+.+   ++.......-+..-||+..-+.
T Consensus        73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l---~~~~~~~~~v~r~~Pn~a~~v~  129 (245)
T PRK07634         73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYL---EERLPKGTPVAWIMPNTAAEIG  129 (245)
T ss_pred             ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHHH---HHHcCCCCeEEEECCcHHHHHh
Confidence            9999988887765543  24434444448987654   4433221112234477665443

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.29  E-value=5.4e-06  Score=76.08  Aligned_cols=101  Identities=10%  Similarity=0.044  Sum_probs=68.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ||+||+|+|+ |.||+.+++.+.+.. ...-+.+++++.  +....+.   ..+++.+.++.+++++      ++|+||.
T Consensus         1 ~mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~---~~~g~~~~~~~~~~~~------~advVil   68 (267)
T PRK11880          1 MMKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALA---EEYGVRAATDNQEAAQ------EADVVVL   68 (267)
T ss_pred             CCCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHH---HhcCCeecCChHHHHh------cCCEEEE
Confidence            6789999998 999999999887542 123455677643  2222222   2346667778888773      7899999


Q ss_pred             cCCchhHHHHHHHHHHc-CCCEEEeCCCCCHHHHH
Q 022250          113 FTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVS  146 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~-G~~vVigTTG~~~e~~~  146 (300)
                      ++.|..+.+.++.+... +..||.-+.|.+.++++
T Consensus        69 ~v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~  103 (267)
T PRK11880         69 AVKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLE  103 (267)
T ss_pred             EcCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHH
Confidence            99998888888776554 44455545578765544

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.28  E-value=3.3e-06  Score=80.62  Aligned_cols=137  Identities=18%  Similarity=0.143  Sum_probs=87.4

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCc------------CCCCcceecCHHHHHhccccc
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME------------QPLEIPVMSDLTMVLGSISQS  104 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~~g~~------------~~~gv~v~~dl~~~l~~~~~~  104 (300)
                      |+|+|+ |++|+.+++.+.+.+++|||++.|.+.. ...+..+.|..            .+.++.++.++++++.     
T Consensus         1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~-----   74 (333)
T TIGR01546         1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE-----   74 (333)
T ss_pred             CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh-----
Confidence            689998 9999999999988899999999985321 00111111100            1234666778999984     


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCEE-EeCCCCCHHHH-----HHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHH
Q 022250          105 KARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQLETV-----SALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vV-igTTG~~~e~~-----~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~  178 (300)
                       ++|+|+++|....+..+.+..++.|...| +|-+.-+..+.     -.-.++..   -.  +-+|-|---|=|..+++.
T Consensus        75 -~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~---~~--~vs~aSCtTn~Lap~~~~  148 (333)
T TIGR01546        75 -KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALG---KD--YVRVVSCNTTGLVRTLNA  148 (333)
T ss_pred             -cCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCc---Cc--eEEecCchHhhHHHHHHH
Confidence             79999999988888999999999985554 55442210000     00011111   12  336677777777777777


Q ss_pred             hccCCCCeE
Q 022250          179 ASFHYKNVE  187 (300)
Q Consensus       179 ~~~~~~die  187 (300)
                      +.+. |.||
T Consensus       149 L~~~-fGI~  156 (333)
T TIGR01546       149 INDY-SKVD  156 (333)
T ss_pred             HHHh-cCeE
Confidence            6543 4443

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=98.27  E-value=1.1e-05  Score=85.69  Aligned_cols=143  Identities=16%  Similarity=0.157  Sum_probs=95.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC--------CcEEEEEEecCC-----CCcchhhhhcCcCC-CCcceecCHHHHHh
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS-----VGEDIGMVCDMEQP-LEIPVMSDLTMVLG   99 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~-----~g~d~~~~~g~~~~-~gv~v~~dl~~~l~   99 (300)
                      ++++|+|+|+ |.+|+.+++.+.+..        +++++++.++..     .|-+...+.-.... ...+-.+++-+.+.
T Consensus       464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (819)
T PRK09436        464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVK  542 (819)
T ss_pred             ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHh
Confidence            4799999998 999999999986543        577889887531     12222222100000 00000112222332


Q ss_pred             cccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCH---HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~---e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a  176 (300)
                      .  .....||+||+|.-+....+...++++|+|||...-+.-.   ++.++|.++|+++++.+.|.++..=|.-++.-+-
T Consensus       543 ~--~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~  620 (819)
T PRK09436        543 E--YHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQ  620 (819)
T ss_pred             h--cCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHH
Confidence            0  0124699999998777777788999999999987654322   6889999999999999999999988888776664


Q ss_pred             HHh
Q 022250          177 ISA  179 (300)
Q Consensus       177 ~~~  179 (300)
                      ..+
T Consensus       621 ~~~  623 (819)
T PRK09436        621 NLL  623 (819)
T ss_pred             HHH
Confidence            444

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.25  E-value=1.5e-05  Score=74.26  Aligned_cols=116  Identities=19%  Similarity=0.184  Sum_probs=77.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |++||+|+|+ |.||+.+++.+.+ .++++. ++|++.  .....+.    ..++...++++++++      ++|+||.+
T Consensus         1 ~~~~IgviG~-G~mG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~~------~~d~vi~~   65 (296)
T PRK11559          1 MTMKVGFIGL-GIMGKPMSKNLLK-AGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVAE------QCDVIITM   65 (296)
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEe
Confidence            5679999997 9999999998875 678876 477643  2222222    345666788888874      78999987


Q ss_pred             CCchhHHHHHH-------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          114 TDASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       114 T~p~~~~~~~~-------~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      .++....+.+.       ..+..|. +|+-++..++...+++.+.+++.++..+-+|=+
T Consensus        66 vp~~~~~~~v~~~~~~~~~~~~~g~-iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~  123 (296)
T PRK11559         66 LPNSPHVKEVALGENGIIEGAKPGT-VVIDMSSIAPLASREIAAALKAKGIEMLDAPVS  123 (296)
T ss_pred             CCCHHHHHHHHcCcchHhhcCCCCc-EEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCC
Confidence            76554433331       2223344 444445555666778888887778888887744

>PLN02700 homoserine dehydrogenase family protein

Probab=98.23  E-value=1.5e-05  Score=77.17  Aligned_cols=139  Identities=17%  Similarity=0.240  Sum_probs=89.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC--------CcEEEEEEecCC---------CCcchhhhhc---C-cCCCCccee--
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS---------VGEDIGMVCD---M-EQPLEIPVM--   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~---------~g~d~~~~~g---~-~~~~gv~v~--   91 (300)
                      +++|+|+|+ |.+|+.+++.+.+..        ++.++++.|+..         .|-|...+..   . ........+  
T Consensus         3 ~i~i~liG~-G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~   81 (377)
T PLN02700          3 KIPVLLLGC-GGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA   81 (377)
T ss_pred             EEEEEEEec-ChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence            589999998 999999999876543        367888888521         1333222111   0 001111000  


Q ss_pred             -----------------cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhh
Q 022250           92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (300)
Q Consensus        92 -----------------~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~  154 (300)
                                       .+..+.+.    ....+|+||+|......++...++++|+|||...-+......+++.++++ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-  156 (377)
T PLN02700         82 LAGGCQVFNNSELSRKVIDIATLLG----KSTGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-  156 (377)
T ss_pred             ccccccccccccccchhhhHHHHhh----ccCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-
Confidence                             11222231    13469999999887888999999999999997755433334455666664 


Q ss_pred             CCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          155 ASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       155 ~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      +++.+.|.+|..-|.-++.-+-..+
T Consensus       157 ~~~~~~yEatVgaGlPiI~tl~~ll  181 (377)
T PLN02700        157 HPRRIRHESTVGAGLPVIASLNRIL  181 (377)
T ss_pred             cCCeEEEEeeeeeccchHHHHHHHh
Confidence            6899999999888887776555444

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=98.23  E-value=6.5e-06  Score=78.82  Aligned_cols=95  Identities=18%  Similarity=0.231  Sum_probs=67.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc------CcC-CCCcceecCHH-HHHhcccccCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD------MEQ-PLEIPVMSDLT-MVLGSISQSKA  106 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g------~~~-~~gv~v~~dl~-~~l~~~~~~~~  106 (300)
                      +||+|+|++|.||+.+++.+.++++++|++++++. ..|++..+...      ... -....+ .+++ +.+      .+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~   73 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPI-VEPEPVAS------KD   73 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEE-EeCCHHHh------cc
Confidence            58999999999999999999989999999998753 35555543221      100 001111 1222 222      47


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      +|+|+.++++..+.++...++++|+.+|.=+
T Consensus        74 ~DvVf~a~p~~~s~~~~~~~~~~G~~VIDls  104 (341)
T TIGR00978        74 VDIVFSALPSEVAEEVEPKLAEAGKPVFSNA  104 (341)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHCCCEEEECC
Confidence            8999989989989999999999999988643

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=98.21  E-value=9.8e-06  Score=77.83  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=70.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc-CcCCCCcceec--CHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD-MEQPLEIPVMS--DLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g-~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||+|+|+||.+|+.+++.+.++|+++|+.++++. ..|+.+.+... +....+. .++  +.++++      .++|+|+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~-~~~~~~~~~~~------~~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDL-NLEPIDEEEIA------EDADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCc-eeecCCHHHhh------cCCCEEE
Confidence            58999999999999999999999999999887653 34554433221 0000011 122  445554      3689999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      -+++...+.+.+..++++|++||-=+..|
T Consensus        74 ~alP~~~s~~~~~~~~~~G~~VIDlS~~f  102 (346)
T TIGR01850        74 LALPHGVSAELAPELLAAGVKVIDLSADF  102 (346)
T ss_pred             ECCCchHHHHHHHHHHhCCCEEEeCChhh
Confidence            77777888999999999999888666543

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=98.13  E-value=3.2e-05  Score=81.87  Aligned_cols=138  Identities=14%  Similarity=0.135  Sum_probs=92.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCcCCCCcceecCHHHHHh
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLG   99 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~-----~g~d~~~~~g~~~~~gv~v~~dl~~~l~   99 (300)
                      ++++|+|+|+ |.+|+.+++.+.+..         +++++++.++..     .|-+...+.....  ......+++.+++
T Consensus       457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~e  533 (810)
T PRK09466        457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFD--DEAVEWDEESLFL  533 (810)
T ss_pred             ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHH--hhcCCccHHHHHH
Confidence            4699999998 999999999986532         478899988532     1222222210000  0001112332221


Q ss_pred             cccc-cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHH
Q 022250          100 SISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (300)
Q Consensus       100 ~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~---~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~  174 (300)
                      .+.. +.+.+|+||+|..+....+...++++|+|||...-..   ..+..++|.++|+++++.+.|-++..=|.-++.-
T Consensus       534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~~  612 (810)
T PRK09466        534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINHT  612 (810)
T ss_pred             HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHHH
Confidence            1100 1223699999987777777889999999999876532   3468899999999999999999999888877433

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.11  E-value=2.6e-05  Score=71.45  Aligned_cols=117  Identities=9%  Similarity=0.055  Sum_probs=72.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCC-CcceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |||+|+|+ |+||+.+++.+.+.. ..+-+.+++++.  ..+..+.   ... ++.+++|.+++++      ++|+|+-.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~--~~~~~l~---~~~~~~~~~~~~~~~~~------~aDvVila   68 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNA--QIAARLA---ERFPKVRIAKDNQAVVD------RSDVVFLA   68 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCH--HHHHHHH---HHcCCceEeCCHHHHHH------hCCEEEEE
Confidence            48999998 999999999987542 223345566532  2222332   123 4667788888874      68999999


Q ss_pred             CCchhHHHHHHHH-HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250          114 TDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus       114 T~p~~~~~~~~~a-l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                      +.|+...+.+... +..+..+|.-..|.+.++++.+   .......+...||...
T Consensus        69 v~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~---~~~~~~~~r~~P~~~~  120 (258)
T PRK06476         69 VRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEW---IGHDVKLVRAIPLPFV  120 (258)
T ss_pred             eCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHH---hCCCCCEEEECCCChh
Confidence            9988877776543 2345555554447877665444   3322234445565433

>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=98.09  E-value=1.6e-05  Score=71.94  Aligned_cols=116  Identities=16%  Similarity=0.227  Sum_probs=95.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .||.+-|.||+-|..|.+...+ .+..+||.+++.+.|.         .-+|.|++.+..|+.++    .++|+-+.|-+
T Consensus        39 TkVi~QGfTGKqgTFHs~q~~e-YgTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIyVP  104 (329)
T KOG1255|consen   39 TKVICQGFTGKQGTFHSQQALE-YGTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIYVP  104 (329)
T ss_pred             ceEEEecccCCccceeHHHHHH-hCCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEEeC
Confidence            7999999999999999998774 6899999998865432         35688999999999874    78999888999


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      |......+..++++-+|++++-| |....+.-++...-...+..-++.||-
T Consensus       105 pp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNC  155 (329)
T KOG1255|consen  105 PPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNC  155 (329)
T ss_pred             ChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCC
Confidence            99999999999999999998876 887766666666654444556888884

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.08  E-value=1.8e-05  Score=70.83  Aligned_cols=92  Identities=24%  Similarity=0.369  Sum_probs=67.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ..||+|+|+ |.+|+.+++.+. ...+++++|++|.+.  ...+...     .++++  ++++++++.    +.++|++|
T Consensus        84 ~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~--~~~~~~i-----~g~~v~~~~~l~~li~----~~~iD~Vi  151 (213)
T PRK05472         84 TWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDP--EKIGTKI-----GGIPVYHIDELEEVVK----ENDIEIGI  151 (213)
T ss_pred             CcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECCh--hhcCCEe-----CCeEEcCHHHHHHHHH----HCCCCEEE
Confidence            579999998 999999998642 357899999999643  1111111     12333  467788875    25799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEE-EeCC
Q 022250          112 DFTDASTVYDNVKQATAFGMRSV-VYVP  138 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vV-igTT  138 (300)
                      .++++..+.+....++++|+..| +.+|
T Consensus       152 Ia~P~~~~~~i~~~l~~~Gi~~il~~~p  179 (213)
T PRK05472        152 LTVPAEAAQEVADRLVEAGIKGILNFAP  179 (213)
T ss_pred             EeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence            88888888999999999996555 4455

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.07  E-value=2.6e-05  Score=60.24  Aligned_cols=87  Identities=16%  Similarity=0.110  Sum_probs=60.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccEEEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ||+++|+ |+||+++++.+.+..  ..++.-+.+++.  +.+.++.   ..+++.++. +..++++      .+|+||-.
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~---~~~~~~~~~~~~~~~~~------~advvila   68 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELA---KEYGVQATADDNEEAAQ------EADVVILA   68 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHH---HHCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHH---HhhccccccCChHHhhc------cCCEEEEE
Confidence            7999997 999999999987542  267775556543  3333343   345666665 7888884      78999999


Q ss_pred             CCchhHHHHHHHH--HHcCCCEEE
Q 022250          114 TDASTVYDNVKQA--TAFGMRSVV  135 (300)
Q Consensus       114 T~p~~~~~~~~~a--l~~G~~vVi  135 (300)
                      ..|....+.+...  ...++-+|.
T Consensus        69 v~p~~~~~v~~~i~~~~~~~~vis   92 (96)
T PF03807_consen   69 VKPQQLPEVLSEIPHLLKGKLVIS   92 (96)
T ss_dssp             S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred             ECHHHHHHHHHHHhhccCCCEEEE
Confidence            9999988877765  556666664

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=98.05  E-value=4.5e-05  Score=75.71  Aligned_cols=113  Identities=18%  Similarity=0.260  Sum_probs=86.1

Q ss_pred             ceEEEEcCC---chHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      -+|+|+|++   |++|..+.+.+.+ .++  ++.. +++..     .+      -.|+++|.+++++-      ..+|++
T Consensus         8 ~siavvGaS~~~~~~g~~~~~~l~~-~gf~g~v~~-Vnp~~-----~~------i~G~~~~~sl~~lp------~~~Dla   68 (447)
T TIGR02717         8 KSVAVIGASRDPGKVGYAIMKNLIE-GGYKGKIYP-VNPKA-----GE------ILGVKAYPSVLEIP------DPVDLA   68 (447)
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHh-CCCCCcEEE-ECCCC-----Cc------cCCccccCCHHHCC------CCCCEE
Confidence            579999997   7899999999875 344  4543 44331     12      35789999999984      479999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEE-EeCCCCCH------HHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vV-igTTG~~~------e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      |.+++++.+.+.++.|.+.|+..+ +-|.||.+      +..++|.++|+++|+. ++.|| ++|+
T Consensus        69 vi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir-vlGPn-c~G~  132 (447)
T TIGR02717        69 VIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR-LLGPN-CLGI  132 (447)
T ss_pred             EEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE-EEecC-eeeE
Confidence            999999999999999999998766 55668764      2247899999999987 56677 3553

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=98.05  E-value=1.3e-05  Score=76.66  Aligned_cols=152  Identities=19%  Similarity=0.100  Sum_probs=91.1

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhh--hcCc---CCCCccee--c
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMV--CDME---QPLEIPVM--S   92 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~~~--~g~~---~~~gv~v~--~   92 (300)
                      |++||+|+|+ |||||.+.+.+.++++++|+++.|+..              .|+--+++  .|-.   ....+.++  .
T Consensus         1 m~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~   79 (334)
T PRK08955          1 MTIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK   79 (334)
T ss_pred             CCeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence            4589999999 999999999999889999999988310              11100000  0000   00112332  2


Q ss_pred             CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC-C-----------CCCHHHHHHHHHHhhhCCCeEE
Q 022250           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-P-----------HIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT-T-----------G~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      +++++-    + .++|+|+++|-.....+.+...++.|..+|+=+ +           |.+++   .+..  +.  -.++
T Consensus        80 ~~~~~~----w-~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~---~~~~--~~--~~II  147 (334)
T PRK08955         80 AIADTD----W-SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDH---LFDP--AI--HPIV  147 (334)
T ss_pred             ChhhCC----c-cCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHH---Hhcc--cC--CCEE
Confidence            444432    2 389999999999989999999999997766543 2           22222   2221  11  2344


Q ss_pred             EcCCCcHHHHHHHHHHHHhccCC--CCeEEEEccC--C---CCCCCc
Q 022250          161 IAPTLSIGSILLQQAAISASFHY--KNVEIVESRP--N---ARDFPS  200 (300)
Q Consensus       161 ~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~Hh--~---K~DaPS  200 (300)
                        +|=|--.|-|.-+++.+-+.+  ...-+.-.|-  +   -.|.|+
T Consensus       148 --SnasCtTn~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~  192 (334)
T PRK08955        148 --TAASCTTNCLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH  192 (334)
T ss_pred             --ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC
Confidence              666777776666666664322  2233444573  2   357775

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.03  E-value=4.7e-05  Score=72.77  Aligned_cols=88  Identities=18%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH-HHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVI  111 (300)
                      |+||+|+|+||..|+.+++.+.+  +|.++|+++......|+... +.|    ..+.+. |++ ..+      .++|+||
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~g----~~i~v~-d~~~~~~------~~vDvVf   68 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FKG----KELKVE-DLTTFDF------SGVDIAL   68 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eCC----ceeEEe-eCCHHHH------cCCCEEE
Confidence            47999999999999999999987  68889999766544444432 111    123332 222 233      3789999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEE
Q 022250          112 DFTDASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vV  134 (300)
                      .++......+.+..++++|+.||
T Consensus        69 ~A~g~g~s~~~~~~~~~~G~~VI   91 (334)
T PRK14874         69 FSAGGSVSKKYAPKAAAAGAVVI   91 (334)
T ss_pred             ECCChHHHHHHHHHHHhCCCEEE
Confidence            77777778899999999999555

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=98.03  E-value=3.5e-05  Score=65.45  Aligned_cols=33  Identities=39%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      +||+|+|+ |+||+.+++.+.+.++++|+++.|.
T Consensus         1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecC
Confidence            58999998 9999999999998899999999984

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=98.02  E-value=1.6e-05  Score=67.76  Aligned_cols=34  Identities=38%  Similarity=0.419  Sum_probs=31.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      |||+|+|+ ||+||.+.+.+...+++||+++-|..
T Consensus         1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             CEEEEECC-CcccHHHHHhhcccceEEEEEEeccc
Confidence            69999998 99999999999999999999998854

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.00  E-value=4.1e-05  Score=62.07  Aligned_cols=97  Identities=19%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCcCCCCcceecCHH-HHHhcccccCCccEEEEcC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVIDfT  114 (300)
                      ||+|+|++|.+|+.+++.+.+.++++++++++++ ..|+++....   ....-.++.+++ +.++    ..++|+|+.++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~DvV~~~~   73 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAG---PHLKGEVVLELEPEDFE----ELAVDIVFLAL   73 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHC---cccccccccccccCChh----hcCCCEEEEcC
Confidence            6899998899999999999988999999997753 2344443221   111101111221 1111    14789999888


Q ss_pred             CchhHHHHH---HHHHHcCCCEEEeCCCC
Q 022250          115 DASTVYDNV---KQATAFGMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~---~~al~~G~~vVigTTG~  140 (300)
                      +++.+.+.+   ..+++.|+.+|--++.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~g~~viD~s~~~  102 (122)
T smart00859       74 PHGVSKEIAPLLPKAAEAGVKVIDLSSAF  102 (122)
T ss_pred             CcHHHHHHHHHHHhhhcCCCEEEECCccc
Confidence            888888853   44567888777544434

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.96  E-value=4.1e-05  Score=72.57  Aligned_cols=124  Identities=14%  Similarity=0.178  Sum_probs=76.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhh-------hcCcCCCCcceecCHHHHHhcccccCC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~-------~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      +|||+|+|+ |.||..++..+.. .++++. +++++. ..+.+...       .|...+..+..++++++++      .+
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~-~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~------~~   74 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAAS-KGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL------AG   74 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHH-CCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH------cC
Confidence            469999998 9999999998874 467755 456532 00111110       0100001144567888877      37


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHH--HHHHHHHhhh---CCCeEEEcCCCcHH
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCDK---ASMGCLIAPTLSIG  168 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~--~~~L~~~a~~---~~i~iv~a~N~SiG  168 (300)
                      +|+||-+.++..+.+.+ ..++.+..+|.-++|+++++  ...+.+...+   .++.++..||+.--
T Consensus        75 aD~Vi~~v~~~~~~~v~-~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~  140 (328)
T PRK14618         75 ADFAVVAVPSKALRETL-AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE  140 (328)
T ss_pred             CCEEEEECchHHHHHHH-HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence            89999777777655544 34456777777788876443  4455555544   56777888887654

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.95  E-value=0.00012  Score=68.67  Aligned_cols=112  Identities=15%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+++|+ |+||+.+++.+.+ .+++|+ ++|++.  .....+.    ..|+..+++++++.++   ...+|+||-+.+
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~---~~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLRE-DGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSK---LEAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHh---CCCCCEEEEEec
Confidence            48999997 9999999999875 578877 588653  1222222    3466778899988751   013699988877


Q ss_pred             ch-hHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250          116 AS-TVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       116 p~-~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      ++ .+.+.+.....   .| .+||-++.-+++...++.+.+++.++..+
T Consensus        69 ~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~v  116 (299)
T PRK12490         69 AGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYV  116 (299)
T ss_pred             CchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence            66 44554444332   33 46666655545555666666666666544

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.94  E-value=6e-05  Score=72.18  Aligned_cols=121  Identities=16%  Similarity=0.151  Sum_probs=80.1

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccE
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAV  109 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DV  109 (300)
                      ++|+||+|+|+||-.|+.+++.+.  .+|..+|+.+.+....|+.+. +.|    ....+.+ +.++ +      .++|+
T Consensus         2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~~~~~~~~~-~------~~vD~   69 (336)
T PRK05671          2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLRVREVDSFD-F------SQVQL   69 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceEEeeCChHH-h------cCCCE
Confidence            346899999999999999999998  578999998877655554432 111    1122221 2222 3      37899


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCEEEeC------------CCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250          110 VIDFTDASTVYDNVKQATAFGMRSVVYV------------PHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigT------------TG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l  171 (300)
                      |+-++++....+.+..+.++|+.||-=+            |.++.++   |..+- +  ..++-.||=+.-..+
T Consensus        70 vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~---i~~~~-~--~~iIAnPgC~~t~~~  137 (336)
T PRK05671         70 AFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAER---LASLA-A--PFLVSSPSASAVALA  137 (336)
T ss_pred             EEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHH---Hcccc-C--CCEEECCCcHHHHHH
Confidence            9866777778889999999999877433            3334433   32221 2  357888887766544

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.94  E-value=0.00017  Score=67.74  Aligned_cols=118  Identities=12%  Similarity=0.075  Sum_probs=75.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+++|+ |.||+.+++.+.+ .+++++ ++|++.  .....+.    ..|+.++++++++.+..   .++|+||-+.+
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~~---~~~dvvi~~v~   68 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLR-GGHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAKL---PAPRVVWLMVP   68 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhhc---CCCCEEEEEec
Confidence            48999997 9999999999875 578865 477653  2222222    35677788898887510   14798887665


Q ss_pred             ch-hHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          116 AS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       116 p~-~~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      +. .+.+.+...   ++.|.-+|..+|+. ++...++.+.+++.|+..+=+|...
T Consensus        69 ~~~~~~~v~~~l~~~l~~g~ivid~st~~-~~~~~~~~~~~~~~g~~~~dapvsG  122 (301)
T PRK09599         69 AGEITDATIDELAPLLSPGDIVIDGGNSY-YKDDIRRAELLAEKGIHFVDVGTSG  122 (301)
T ss_pred             CCcHHHHHHHHHHhhCCCCCEEEeCCCCC-hhHHHHHHHHHHHcCCEEEeCCCCc
Confidence            54 444444333   33453344444444 4455667777788888877777654

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.87  E-value=9.3e-05  Score=67.84  Aligned_cols=113  Identities=18%  Similarity=0.205  Sum_probs=72.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||+++|+ |.||..+++.+.+. ++    +++...+++.  .....+    .+.|+.+.++.+++++      ++|+||
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~----~~~g~~~~~~~~e~~~------~aDvVi   66 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVF----QSLGVKTAASNTEVVK------SSDVII   66 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHH----HHcCCEEeCChHHHHh------cCCEEE
Confidence            68999997 99999999998754 44    6654336542  222222    2357777888888773      789999


Q ss_pred             EcCCchhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCCcH
Q 022250          112 DFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSI  167 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~Si  167 (300)
                      -+..|+...+.+.....   .+.-+|.-+.|.+.++++   +....  .+++ ..||...
T Consensus        67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~--~~vvr~mP~~~~  121 (266)
T PLN02688         67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQ---EWAGG--RRVVRVMPNTPC  121 (266)
T ss_pred             EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHH---HHcCC--CCEEEECCCcHH
Confidence            98888887777655433   344344334577665544   33322  1555 5677544

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.87  E-value=0.00024  Score=65.86  Aligned_cols=117  Identities=11%  Similarity=0.159  Sum_probs=74.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |||+++|+ |.||+.+++.+.+..   ..+++ +++++.. +.+..+.   .++++.++++..++++      ++|+||-
T Consensus         4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~~-~~~~~l~---~~~g~~~~~~~~e~~~------~aDvVil   71 (279)
T PRK07679          4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSNE-TRLQELH---QKYGVKGTHNKKELLT------DANILFL   71 (279)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCCH-HHHHHHH---HhcCceEeCCHHHHHh------cCCEEEE
Confidence            59999998 999999999988653   24444 4665320 1122222   2356777788888773      7899998


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEe-CCCCCHHHHHHHHHHhhhCCCeEEEc-CCCcHH
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVY-VPHIQLETVSALSAFCDKASMGCLIA-PTLSIG  168 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVig-TTG~~~e~~~~L~~~a~~~~i~iv~a-~N~SiG  168 (300)
                      ...|....+.+......  .-.+||- ..|.+.+++.++   .. .+.|++.+ ||+..-
T Consensus        72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~---~~-~~~~v~r~mPn~~~~  127 (279)
T PRK07679         72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNL---LQ-KDVPIIRAMPNTSAA  127 (279)
T ss_pred             EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cC-CCCeEEEECCCHHHH
Confidence            88888887776655432  2235555 478887765543   32 23567755 665533

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.84  E-value=9.4e-05  Score=69.41  Aligned_cols=121  Identities=19%  Similarity=0.240  Sum_probs=69.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC--------cCCCCcceecCHHHHHhccccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM--------EQPLEIPVMSDLTMVLGSISQS  104 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~--------~~~~gv~v~~dl~~~l~~~~~~  104 (300)
                      ||||+|+|+ |.||..++..+.+ .+.++ .+++++.  ..+..+.  +.        ..+.++...++++++++     
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~-~g~~V-~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   70 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLAR-NGHDV-TLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA-----   70 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCEE-EEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh-----
Confidence            479999998 9999999998875 46775 4566532  1111111  00        00114555678887773     


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhh-----CCCeEEEcCCCc
Q 022250          105 KARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDK-----ASMGCLIAPTLS  166 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~-----~~i~iv~a~N~S  166 (300)
                       ++|+||-++.+....+.+.....   .+..+|.-+.|++.+....+.+..++     ....++..||+.
T Consensus        71 -~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~  139 (325)
T PRK00094         71 -DADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFA  139 (325)
T ss_pred             -CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHH
Confidence             78999988777655555544443   34444444336654333223332222     235667778863

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.84  E-value=0.0001  Score=69.99  Aligned_cols=81  Identities=16%  Similarity=0.130  Sum_probs=61.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ||+||+|+|+||-.|+.+++.+.++|+++|+....+..  .+.               .+.++.+      .++|+|+=+
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~---------------~~~~~~~------~~~DvvFla   57 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA---------------AARRELL------NAADVAILC   57 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc---------------cCchhhh------cCCCEEEEC
Confidence            68999999999999999999999999999998865431  110               1223343      368999866


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      .+.....+.+..+.+.|+.||-=+
T Consensus        58 lp~~~s~~~~~~~~~~g~~VIDlS   81 (313)
T PRK11863         58 LPDDAAREAVALIDNPATRVIDAS   81 (313)
T ss_pred             CCHHHHHHHHHHHHhCCCEEEECC
Confidence            666777888898889999776433

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.82  E-value=9.5e-05  Score=70.46  Aligned_cols=100  Identities=16%  Similarity=0.092  Sum_probs=70.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCCCccee-cCHHHHHhcccccCCccEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVM-SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ||+||+|+|++|-.|-.+++.+..+|++|+..+..+...|+...+..- ...-...+.. -|.+++..     .++|||+
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~-----~~~DvvF   75 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIEL-----DECDVVF   75 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhc-----ccCCEEE
Confidence            589999999999999999999999999996555544435665544320 0000111121 23344432     4689999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      -+++.....+.+...++.|+.||=-++
T Consensus        76 lalPhg~s~~~v~~l~~~g~~VIDLSa  102 (349)
T COG0002          76 LALPHGVSAELVPELLEAGCKVIDLSA  102 (349)
T ss_pred             EecCchhHHHHHHHHHhCCCeEEECCc
Confidence            888889999999999999999775444

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.79  E-value=0.00015  Score=67.32  Aligned_cols=119  Identities=9%  Similarity=0.048  Sum_probs=75.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCcCCC-CcceecCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      |+||+|+|+ |.||+.+++.+.+...   .+++. ++++.. .....+.   ..+ ++.++.|.++++.      ++|+|
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~-~~r~~~-~~~~~l~---~~~~~~~~~~~~~e~~~------~aDvV   68 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIIL-YSSSKN-EHFNQLY---DKYPTVELADNEAEIFT------KCDHS   68 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEE-EeCCcH-HHHHHHH---HHcCCeEEeCCHHHHHh------hCCEE
Confidence            478999998 9999999999876531   46654 343210 1111121   122 3455677777763      78999


Q ss_pred             EEcCCchhHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCCcHHHH
Q 022250          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSI  170 (300)
Q Consensus       111 IDfT~p~~~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~SiGv~  170 (300)
                      |-+.+|..+.+.+..+   +..++.+|+-.-|.+.+++++   ....  .+++ .=||...-+.
T Consensus        69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~--~~vvR~MPN~~~~~g  127 (277)
T PRK06928         69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG--LQVSRLIPSLTSAVG  127 (277)
T ss_pred             EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC--CCEEEEeCccHHHHh
Confidence            9899998888877755   345666776566998766544   3322  2333 3477766554

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.78  E-value=0.00034  Score=65.64  Aligned_cols=115  Identities=13%  Similarity=0.063  Sum_probs=69.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+|+|+ |+||..+++.+.+ .+++++. +|++.  .....+.    +.++....+++++.+.   ...+|+|+-+.+
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~-~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~---~~~~dvIi~~vp   68 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAK-RGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQR---LSAPRVVWVMVP   68 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhh---cCCCCEEEEEcC
Confidence            48999997 9999999998875 5788765 78653  2222232    2344445677666531   136899997777


Q ss_pred             chhHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          116 ASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       116 p~~~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      +..+.+.+...   ++.|.-+|..+|+... ...++.+.+++.++..+=+|
T Consensus        69 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~-~t~~~~~~~~~~g~~~vda~  118 (298)
T TIGR00872        69 HGIVDAVLEELAPTLEKGDIVIDGGNSYYK-DSLRRYKLLKEKGIHLLDCG  118 (298)
T ss_pred             chHHHHHHHHHHhhCCCCCEEEECCCCCcc-cHHHHHHHHHhcCCeEEecC
Confidence            76555555443   3455545555555433 33344444555666655443

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.77  E-value=0.00013  Score=63.93  Aligned_cols=91  Identities=21%  Similarity=0.303  Sum_probs=68.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHH-HhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i-~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      .|.+|+|+|+ |++|++++..- .+..++++++++|.+.      +..|. .-.+++++  ++++..+++    .+.|+.
T Consensus        83 ~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~------~~VG~-~~~~v~V~~~d~le~~v~~----~dv~ia  150 (211)
T COG2344          83 KTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDP------DKVGT-KIGDVPVYDLDDLEKFVKK----NDVEIA  150 (211)
T ss_pred             cceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCH------HHhCc-ccCCeeeechHHHHHHHHh----cCccEE
Confidence            3689999999 99999999865 3467899999999653      12222 22357776  588888863    578899


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEe
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVig  136 (300)
                      |-+.+.+.+.+.+....++|+.-+.-
T Consensus       151 iLtVPa~~AQ~vad~Lv~aGVkGIlN  176 (211)
T COG2344         151 ILTVPAEHAQEVADRLVKAGVKGILN  176 (211)
T ss_pred             EEEccHHHHHHHHHHHHHcCCceEEe
Confidence            96766677788899999999876654

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.77  E-value=0.0003  Score=68.15  Aligned_cols=120  Identities=10%  Similarity=0.101  Sum_probs=74.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCcCCCCcceec--CHHHHHhcccccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DV  109 (300)
                      |+||+|+|+||-.|+.+++.++++++++   |+. +.+...|.....+.|    ....+.+  |.++ +      .++|+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g----~~~~v~~~~~~~~-~------~~~Di   68 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGG----KEGTLQDAFDIDA-L------KKLDI   68 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCC----CcceEEecCChhH-h------cCCCE
Confidence            5899999999999999999888889998   777 444333333322222    1223333  2333 3      36898


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCC-EEEeCC--------------CCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          110 VIDFTDASTVYDNVKQATAFGMR-SVVYVP--------------HIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~-vVigTT--------------G~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      ++=+...+...+.+..+.++|++ +||--+              .+++++   |.. ..+.|+.++..||=+.-..
T Consensus        69 vf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~---i~~-~~~~g~~iIanPnC~tt~~  140 (369)
T PRK06598         69 IITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDV---IDD-ALANGVKTFVGGNCTVSLM  140 (369)
T ss_pred             EEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHH---HHh-hhhcCCCEEEcCChHHHHH
Confidence            88334555568888889999986 444433              233433   443 3235556777888665543

>PRK07680 late competence protein ComER; Validated

Probab=97.77  E-value=0.00023  Score=65.75  Aligned_cols=99  Identities=10%  Similarity=0.157  Sum_probs=64.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCcCCC-CcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |||+|+|+ |.||+.+++.+.+...+  +-+.+++++.  .....+.   ..+ ++.++.+.++++.      ++|+||-
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~---~~~~g~~~~~~~~~~~~------~aDiVil   68 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIK---ERYPGIHVAKTIEEVIS------QSDLIFI   68 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHH---HHcCCeEEECCHHHHHH------hCCEEEE
Confidence            47999998 99999999998765322  3355677643  2222222   122 5677788888774      7899998


Q ss_pred             cCCchhHHHHHHHHHH---cCCCEEEeCC-CCCHHHHHH
Q 022250          113 FTDASTVYDNVKQATA---FGMRSVVYVP-HIQLETVSA  147 (300)
Q Consensus       113 fT~p~~~~~~~~~al~---~G~~vVigTT-G~~~e~~~~  147 (300)
                      ++.|....+.+.....   .+. +|+-.+ |.+.++++.
T Consensus        69 av~p~~~~~vl~~l~~~l~~~~-~iis~~ag~~~~~L~~  106 (273)
T PRK07680         69 CVKPLDIYPLLQKLAPHLTDEH-CLVSITSPISVEQLET  106 (273)
T ss_pred             ecCHHHHHHHHHHHHhhcCCCC-EEEEECCCCCHHHHHH
Confidence            8888887777765433   344 454444 676554433

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.76  E-value=0.0002  Score=60.94  Aligned_cols=124  Identities=15%  Similarity=0.162  Sum_probs=74.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-C-------CcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-V-------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~-------g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (300)
                      ||+|+|+ |.||.+++..+... +.++. .+.++. .       +.....+.+..-+..+.+++|++++++      ++|
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~-g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ad   71 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADN-GHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------DAD   71 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHC-TEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T-S
T ss_pred             CEEEECc-CHHHHHHHHHHHHc-CCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------ccc
Confidence            7999998 99999999988754 45443 344321 0       000011111111235667899999984      789


Q ss_pred             EEEEcCCchhHHHHHHHH---HHcCCCEEEeCCCCCHH----HHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          109 VVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE----TVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~a---l~~G~~vVigTTG~~~e----~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      ++|-.++...+.+.++..   ++.+.++|+-+-|+...    --+.+.+......+.++-.|||.--+
T Consensus        72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei  139 (157)
T PF01210_consen   72 IIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEI  139 (157)
T ss_dssp             EEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHH
T ss_pred             EEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHH
Confidence            999777777776666544   45788888877788321    12345666655558888999987543

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.76  E-value=0.00034  Score=64.98  Aligned_cols=120  Identities=11%  Similarity=0.097  Sum_probs=74.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      |.+||+++|+ |+||+.+++.+.+..   ..++. ++|++.  ..+..+.   .++|+.++++.++++.      ++|+|
T Consensus         1 ~~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~-v~~r~~--~~~~~l~---~~~g~~~~~~~~e~~~------~aDiI   67 (272)
T PRK12491          1 MNKQIGFIGC-GNMGIAMIGGMINKNIVSPDQII-CSDLNV--SNLKNAS---DKYGITITTNNNEVAN------SADIL   67 (272)
T ss_pred             CCCeEEEECc-cHHHHHHHHHHHHCCCCCCceEE-EECCCH--HHHHHHH---HhcCcEEeCCcHHHHh------hCCEE
Confidence            4468999998 999999999987642   22444 456542  2222222   2356667778878774      78999


Q ss_pred             EEcCCchhHHHHHHHHHHc--CCCEEEeC-CCCCHHHHHHHHHHhhhCCCeE-EEcCCCcHHHH
Q 022250          111 IDFTDASTVYDNVKQATAF--GMRSVVYV-PHIQLETVSALSAFCDKASMGC-LIAPTLSIGSI  170 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~--G~~vVigT-TG~~~e~~~~L~~~a~~~~i~i-v~a~N~SiGv~  170 (300)
                      |-+..|....+.+......  +..+||-. .|.+-+++++   ..... .++ -.-||...-+.
T Consensus        68 iLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~-~~vvR~MPN~~~~vg  127 (272)
T PRK12491         68 ILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRK-LKVIRVMPNTPVLVG  127 (272)
T ss_pred             EEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCC-CcEEEECCChHHHHc
Confidence            9888998888777654432  23455544 4898766544   33221 223 34577766443

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=97.74  E-value=0.00019  Score=69.76  Aligned_cols=121  Identities=12%  Similarity=0.070  Sum_probs=75.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEE-ecCC--C-------Cc---------chhhhhcCcCCCCccee---
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI-DSHS--V-------GE---------DIGMVCDMEQPLEIPVM---   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~v-d~~~--~-------g~---------d~~~~~g~~~~~gv~v~---   91 (300)
                      |.||+|+|+||.+|+.+++.+.+.| .++++++. +.+.  .       +.         ...++-......++.++   
T Consensus         1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            4689999999999999999998776 69999987 3211  0       00         00000000001122232   


Q ss_pred             cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC-CCCCHHHHHHHHHHhhhCCCeEE
Q 022250           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT-TG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      +.+.++++    ..++|+|+....-.+..+....|+++|++|.+.. .-+- ..-..|.+++++++..++
T Consensus        81 ~~~~~l~~----~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV-~aG~~i~~~a~~~g~~i~  145 (385)
T PRK05447         81 EGLCELAA----LPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLV-CAGELVMDAAKKSGAQIL  145 (385)
T ss_pred             hHHHHHhc----CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHH-hhHHHHHHHHHHcCCeEE
Confidence            24445554    3568999988887777888999999999999843 2111 223446666666665544

>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type

Probab=97.74  E-value=0.00034  Score=66.50  Aligned_cols=137  Identities=18%  Similarity=0.206  Sum_probs=93.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHH---hc-------------------CCcEEEEEEec--CCCCcchhhhhcCc--------
Q 022250           36 IKVIINGAVKEIGRAAVIAVT---KA-------------------RGMEVAGAIDS--HSVGEDIGMVCDME--------   83 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~---~~-------------------~~~eLvg~vd~--~~~g~d~~~~~g~~--------   83 (300)
                      +||+|+|. |+-.+.+++-+.   +.                   .|+|+|+++|-  .+.|+|+.+..-..        
T Consensus         1 irvai~Gv-GncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~   79 (351)
T TIGR03450         1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIA   79 (351)
T ss_pred             CeEEEEec-cHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeee
Confidence            69999998 999999998652   11                   16699999985  56788876644211        


Q ss_pred             --CCCCccee-----c------------------CHHHHHhcccccCCccEEEEcCC---chhHHHHHHHHHHcCCCEEE
Q 022250           84 --QPLEIPVM-----S------------------DLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSVV  135 (300)
Q Consensus        84 --~~~gv~v~-----~------------------dl~~~l~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~vVi  135 (300)
                        .++|+.+.     +                  |+-+.|.    +.++||+|.+-+   -++..-++..|++.|++.|-
T Consensus        80 ~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk----~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN  155 (351)
T TIGR03450        80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALK----DAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVN  155 (351)
T ss_pred             ccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHH----hcCCCEEEECCccchHHHHHHHHHHHHHcCCceEe
Confidence              12233322     1                  2333343    478999999853   56677788999999999999


Q ss_pred             eCCCCCHHHHHHHHHHhhhCCCeEEEcCCC-c-HHHHHHHHH-HHHh
Q 022250          136 YVPHIQLETVSALSAFCDKASMGCLIAPTL-S-IGSILLQQA-AISA  179 (300)
Q Consensus       136 gTTG~~~e~~~~L~~~a~~~~i~iv~a~N~-S-iGv~ll~~~-a~~~  179 (300)
                      +||-+.. ...++.+.++++++|+ ..--+ | +|..++... +..+
T Consensus       156 ~~P~~ia-~~p~~a~~f~e~glPi-~GDD~Ksq~GaTi~h~vLa~lf  200 (351)
T TIGR03450       156 ALPVFIA-SDPEWAKKFTDAGVPI-VGDDIKSQVGATITHRVLAKLF  200 (351)
T ss_pred             ccCcccc-CCHHHHHHHHHCCCCE-ecccccccCCCchHHHHHHHHH
Confidence            9996543 2245777788899984 34444 3 788888664 4444

This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.73  E-value=0.00017  Score=69.13  Aligned_cols=93  Identities=14%  Similarity=0.089  Sum_probs=67.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      +++||+|+|+||-.|+.+++.+.+  .|..+|..+......|+... +.+    ..+++. ++++..-     .++|+++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~----~~~~v~-~~~~~~~-----~~~Dvvf   71 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG----KSVTVQ-DAAEFDW-----SQAQLAF   71 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC----cceEEE-eCchhhc-----cCCCEEE
Confidence            468999999999999999999998  79999998866555666554 211    134443 4444321     3689998


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      =+++.....+.+..+.++|+.||-=+
T Consensus        72 ~a~p~~~s~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         72 FVAGREASAAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             ECCCHHHHHHHHHHHHHCCCEEEECC
Confidence            55566667889999999999877443

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=97.73  E-value=9.2e-05  Score=70.94  Aligned_cols=196  Identities=18%  Similarity=0.159  Sum_probs=106.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcch----------hhhhc--C---c------CCCCccee--
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI----------GMVCD--M---E------QPLEIPVM--   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~----------~~~~g--~---~------~~~gv~v~--   91 (300)
                      ++||+|+|+ ||||+.+++.+.+.++++|+++.|+....+..          |.+-+  +   .      ....+.++  
T Consensus         5 ~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~   83 (338)
T PLN02358          5 KIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGI   83 (338)
T ss_pred             ceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEc
Confidence            689999998 99999999999888999999999842100000          00100  0   0      00012222  


Q ss_pred             cCHHHH-HhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC----------CCCCHHHHHHHHHHhhhCCCeEE
Q 022250           92 SDLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV----------PHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus        92 ~dl~~~-l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT----------TG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      +|.+++ ..    +.++|+|+++|-.....+.+...+++|...|+=+          +|.+.++++      .+  -.++
T Consensus        84 ~~p~~~~w~----~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~------~~--~~II  151 (338)
T PLN02358         84 RNPEDIPWG----EAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYK------SD--LDIV  151 (338)
T ss_pred             CCcccCccc----ccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhC------CC--CCEE
Confidence            223332 11    1478999999999999999999999997555443          234444322      12  2334


Q ss_pred             EcCCCcHHHHHHHHHHHHhccCC--CCeEEEEccC----C-CCCCCchHHHHHHHHHHh--cCCccccCccccccccccc
Q 022250          161 IAPTLSIGSILLQQAAISASFHY--KNVEIVESRP----N-ARDFPSPDATQIANNLSN--LGQIYNREDISTDVKARGQ  231 (300)
Q Consensus       161 ~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~Hh----~-K~DaPSGTA~~l~~~i~~--~~~~~~r~~~~~~~~~rg~  231 (300)
                        +|=|--.|-|.-+++.+.+.+  ...-+.-.|-    + -.|.|+..-+..+..++.  .+...+-.      ..-+.
T Consensus       152 --SnasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaa------ka~~k  223 (338)
T PLN02358        152 --SNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA------KAVGK  223 (338)
T ss_pred             --ECCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchh------hhhhh
Confidence              566666676666666654322  2233444463    2 357776433322232222  11110000      00011


Q ss_pred             ccc--CCCeeEEEEEcCCCCee
Q 022250          232 VLG--EDGVRVHSMVLPGLPSS  251 (300)
Q Consensus       232 ~~~--~~~i~i~s~R~g~ivg~  251 (300)
                      ++.  +..+..+++|.|-..|+
T Consensus       224 IlP~l~gkl~g~avRVPv~~gs  245 (338)
T PLN02358        224 VLPSLNGKLTGMSFRVPTVDVS  245 (338)
T ss_pred             ccccCCCcEEEEEEEeeEcCee
Confidence            111  13488889999887663

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.72  E-value=0.00047  Score=64.20  Aligned_cols=111  Identities=15%  Similarity=0.124  Sum_probs=71.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (300)
                      ||+|+|+ |.||+.+++.+.+ .++++. ++|++.  .....+.    ..|....++.+++++      ++|+||.+.+.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAK-AGYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD   65 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence            6999997 9999999998875 578876 567643  2222222    345555678888874      78999976654


Q ss_pred             hhHH-HHH---HHHH---HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          117 STVY-DNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       117 ~~~~-~~~---~~al---~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      .... +.+   ..++   ..|. +|+-++..++...++|.+.+++.++.++-+|
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g~~~~~~p  118 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKGIDYLDAP  118 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence            4333 332   1122   2333 4444455556666778888887788877766

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.70  E-value=0.00011  Score=70.19  Aligned_cols=99  Identities=21%  Similarity=0.208  Sum_probs=65.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-C-------------CCcchhhhh--c----CcCCCCccee--
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-------------VGEDIGMVC--D----MEQPLEIPVM--   91 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-------------~g~d~~~~~--g----~~~~~gv~v~--   91 (300)
                      |++||+|+|. ||+||.+.+.+.+.+++|+|++-|+. .             .|+--+++.  +    + ....++++  
T Consensus         1 m~~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i-~g~~i~~~~~   78 (337)
T PTZ00023          1 MVVKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMI-GSKKVHVFFE   78 (337)
T ss_pred             CceEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEE-CCeEEEEEeC
Confidence            5689999998 99999999998877899999986621 0             011000000  0    0 00123333  


Q ss_pred             cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      .|++++-=   .+.++|+|+++|......+.+..++++|...|+=+
T Consensus        79 ~dp~~lpW---~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS  121 (337)
T PTZ00023         79 KDPAAIPW---GKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS  121 (337)
T ss_pred             CChhhCCc---cccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence            34544420   12479999999988888999999999998777654

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.69  E-value=7.5e-05  Score=71.70  Aligned_cols=126  Identities=15%  Similarity=0.167  Sum_probs=76.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcC-------CcEEEEEEecC-------------CCCcchhhhhcCcCCCCcceecCHHH
Q 022250           37 KVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSH-------------SVGEDIGMVCDMEQPLEIPVMSDLTM   96 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~-------~~eLvg~vd~~-------------~~g~d~~~~~g~~~~~gv~v~~dl~~   96 (300)
                      ||+|+|+ |.+|.+++..+....       +.++.- +.++             ........+.|..-+.++..++|+++
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~e   78 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRM-WVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVE   78 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEE-EEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHH
Confidence            6999998 999999999887532       033332 2220             00011111223211234567789999


Q ss_pred             HHhcccccCCccEEEEcCCchhHHHHHHHH---HHcCCCEEEeCCCCCHH--HHHHHHHHhh---hCCCeEEEcCCCcHH
Q 022250           97 VLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE--TVSALSAFCD---KASMGCLIAPTLSIG  168 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTTG~~~e--~~~~L~~~a~---~~~i~iv~a~N~SiG  168 (300)
                      +++      ++|++|-..++....+.+...   ++.+.++|+.|-|+..+  ....+.+..+   ...+.++..|||+.-
T Consensus        79 al~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~E  152 (342)
T TIGR03376        79 AAK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANE  152 (342)
T ss_pred             HHh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHH
Confidence            984      789998777776666655543   45577788877798765  3223222222   234777899999887


Q ss_pred             HH
Q 022250          169 SI  170 (300)
Q Consensus       169 v~  170 (300)
                      +.
T Consensus       153 va  154 (342)
T TIGR03376       153 VA  154 (342)
T ss_pred             HH
Confidence            64

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.69  E-value=0.00027  Score=67.90  Aligned_cols=94  Identities=15%  Similarity=0.090  Sum_probs=65.0

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH-HHHhcccccCCcc
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARA  108 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~D  108 (300)
                      +.+++||+|+|+||..|+.+++.+.+  +|..+|..+......|+.... -|    ..+.+ .+++ +.+      .++|
T Consensus         4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~----~~~~v-~~~~~~~~------~~~D   71 (344)
T PLN02383          4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EG----RDYTV-EELTEDSF------DGVD   71 (344)
T ss_pred             cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cC----ceeEE-EeCCHHHH------cCCC
Confidence            34568999999999999999999987  788999887665555554432 11    11222 2222 334      3689


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250          109 VVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      +|+=+...+...+.+..+.+.|+.||-=+
T Consensus        72 ~vf~a~p~~~s~~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         72 IALFSAGGSISKKFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             EEEECCCcHHHHHHHHHHHhCCCEEEECC
Confidence            99844455666888888889998877543

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.67  E-value=0.00042  Score=67.14  Aligned_cols=129  Identities=17%  Similarity=0.147  Sum_probs=79.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC------CcEEE-EEEecCCCC-----------cchhhhhcCcCCCCcceecCHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVA-GAIDSHSVG-----------EDIGMVCDMEQPLEIPVMSDLTM   96 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLv-g~vd~~~~g-----------~d~~~~~g~~~~~gv~v~~dl~~   96 (300)
                      ++||+|+|+ |.+|.+++..+.+..      +.++. ...+....+           .+...+-|+.-+.++..++|+++
T Consensus        11 ~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         11 PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            489999998 999999999987652      13332 222221001           11112223322335666889998


Q ss_pred             HHhcccccCCccEEEEcCCchhHHHHHHHHHH-----cCCCEEEeCCCCCHHHH--HHHHHHhh---hCCCeEEEcCCCc
Q 022250           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETV--SALSAFCD---KASMGCLIAPTLS  166 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~-----~G~~vVigTTG~~~e~~--~~L~~~a~---~~~i~iv~a~N~S  166 (300)
                      +++      ++|+||-..+|....+.+.....     .+..+|+.+-|++.+..  ..+.+..+   ...+.++..|||+
T Consensus        90 av~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A  163 (365)
T PTZ00345         90 AVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVA  163 (365)
T ss_pred             HHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHH
Confidence            884      78999978888888777766543     24456667768764331  22222222   1347778999999


Q ss_pred             HHHH
Q 022250          167 IGSI  170 (300)
Q Consensus       167 iGv~  170 (300)
                      -=+.
T Consensus       164 ~Eva  167 (365)
T PTZ00345        164 NDVA  167 (365)
T ss_pred             HHHH
Confidence            8874

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.67  E-value=0.00024  Score=69.22  Aligned_cols=98  Identities=12%  Similarity=0.171  Sum_probs=62.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCcCCCCcceecCHHHH-HhcccccCCccEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMSDLTMV-LGSISQSKARAVVI  111 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv~v~~dl~~~-l~~~~~~~~~DVVI  111 (300)
                      +++||+|+|+||..|+.+++.+.++|+++|+.+......|+...... .+ .....+...+++.. +      .++|+|+
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l-~~~~~~~~~~~~~~~~------~~~DvVf  109 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHL-ITQDLPNLVAVKDADF------SDVDAVF  109 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccc-cCccccceecCCHHHh------cCCCEEE
Confidence            57899999999999999999999999999999876544444332111 00 00112212233322 3      3689998


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      =+...+...+.+.. ++.|+.||-=++.
T Consensus       110 ~Alp~~~s~~i~~~-~~~g~~VIDlSs~  136 (381)
T PLN02968        110 CCLPHGTTQEIIKA-LPKDLKIVDLSAD  136 (381)
T ss_pred             EcCCHHHHHHHHHH-HhCCCEEEEcCch
Confidence            44444555666666 5788777755543

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.65  E-value=0.00084  Score=62.96  Aligned_cols=117  Identities=16%  Similarity=0.168  Sum_probs=77.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+++|. |+||+.+++.+.+ .++++. ++|++.   +...+.    ..|....++..++.+      .+|+||-+.+
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~-~G~~v~-v~~~~~---~~~~~~----~~g~~~~~s~~~~~~------~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLAR-AGHQLH-VTTIGP---VADELL----SLGAVSVETARQVTE------ASDIIFIMVP   64 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHH-CCCeEE-EEeCCH---hHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            38999997 9999999999875 567765 566542   122232    345666778888763      7899986654


Q ss_pred             ch-hHHHHHHH---HH---HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          116 AS-TVYDNVKQ---AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       116 p~-~~~~~~~~---al---~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      .+ .+.+.+..   .+   ..| .+|+-++..+++..+++.+.+++.|+..+=+| +|=|..
T Consensus        65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP-VsGg~~  124 (292)
T PRK15059         65 DTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP-VSGGEI  124 (292)
T ss_pred             ChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec-CCCCHH
Confidence            43 33443311   12   223 46666777778888889888888888877766 444543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.65  E-value=0.00075  Score=63.85  Aligned_cols=123  Identities=16%  Similarity=0.222  Sum_probs=72.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCcCCCCcceecCHHHHHhcccccCCc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--------g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (300)
                      |||+|+|+ |.||..++..+.+ .+.++. +++++..        +.....+.+...+.++.+++|+++.+.     .++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~-~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSS-KKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----DNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----CCC
Confidence            48999998 9999999998875 456664 5665310        000000111111224557788887763     478


Q ss_pred             cEEEEcCCchhHHHHHHHHHH----cCCCEEEeCCCCCHHH----HHHHHHHhhhCCCeEEEcCCCc
Q 022250          108 AVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~----~G~~vVigTTG~~~e~----~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      |++|-++.+..+.+.++....    .+.++|+-+-|+..+.    .+.|.+..-...+.++-.|++.
T Consensus        73 Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a  139 (326)
T PRK14620         73 TCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFA  139 (326)
T ss_pred             CEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHH
Confidence            999988888777777765544    3456777666874311    1234444322223344477754

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.63  E-value=7.9e-05  Score=61.71  Aligned_cols=93  Identities=19%  Similarity=0.238  Sum_probs=51.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .+||+|+|+ ||+|+.+.+++.+ .++++++++.++.  .......   ...+-..+.++++++      .++|+++ .|
T Consensus        10 ~l~I~iIGa-GrVG~~La~aL~~-ag~~v~~v~srs~--~sa~~a~---~~~~~~~~~~~~~~~------~~aDlv~-ia   75 (127)
T PF10727_consen   10 RLKIGIIGA-GRVGTALARALAR-AGHEVVGVYSRSP--ASAERAA---AFIGAGAILDLEEIL------RDADLVF-IA   75 (127)
T ss_dssp             --EEEEECT-SCCCCHHHHHHHH-TTSEEEEESSCHH---HHHHHH---C--TT-----TTGGG------CC-SEEE-E-
T ss_pred             ccEEEEECC-CHHHHHHHHHHHH-CCCeEEEEEeCCc--ccccccc---ccccccccccccccc------ccCCEEE-EE
Confidence            699999998 9999999998874 6899999887543  1112222   112222334667776      4789998 55


Q ss_pred             CchhH-HHHHHHHHHc----CCCEEEeCCCCC
Q 022250          115 DASTV-YDNVKQATAF----GMRSVVYVPHIQ  141 (300)
Q Consensus       115 ~p~~~-~~~~~~al~~----G~~vVigTTG~~  141 (300)
                      .||.. .+........    .=.+|+=|.|-.
T Consensus        76 vpDdaI~~va~~La~~~~~~~g~iVvHtSGa~  107 (127)
T PF10727_consen   76 VPDDAIAEVAEQLAQYGAWRPGQIVVHTSGAL  107 (127)
T ss_dssp             S-CCHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred             echHHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence            55555 4455554444    124777777744

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.62  E-value=0.00016  Score=69.03  Aligned_cols=132  Identities=21%  Similarity=0.156  Sum_probs=80.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhh------hcCcCCCCccee--c
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMV------CDMEQPLEIPVM--S   92 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~------~g~~~~~gv~v~--~   92 (300)
                      |++||+|+|. ||+||.+.+.+.+.+++|+|++=|...             .|+--+++      +-. ....+.++  .
T Consensus         1 m~~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v-~g~~I~v~~~~   78 (331)
T PRK15425          1 MTIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIV-NGKKIRVTAER   78 (331)
T ss_pred             CceEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEE-CCeEEEEEEcC
Confidence            4589999998 999999999988778999999876210             01100000      000 00123333  2


Q ss_pred             CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHHhhhCCCeEEE
Q 022250           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH-----------IQLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG-----------~~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      +++++-=   .+.++|+|+++|-.....+.+...+++|...|+=+.-           .+.+   .+   ..+   .++ 
T Consensus        79 dp~~~~w---~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~---~~---~~~---~II-  145 (331)
T PRK15425         79 DPANLKW---DEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFD---KY---AGQ---DIV-  145 (331)
T ss_pred             ChhhCcc---cccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHH---Hc---CCC---CEE-
Confidence            4554321   0137899999998888899999999999777765422           2222   12   111   333 


Q ss_pred             cCCCcHHHHHHHHHHHHhcc
Q 022250          162 APTLSIGSILLQQAAISASF  181 (300)
Q Consensus       162 a~N~SiGv~ll~~~a~~~~~  181 (300)
                       +|=|--.|-|.-+++.+-+
T Consensus       146 -SnaSCtTn~Lapvlk~L~~  164 (331)
T PRK15425        146 -SNASCTTNCLAPLAKVIND  164 (331)
T ss_pred             -ECCCcHHHHHHHHHHHHHH
Confidence             6667777766666666643

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.61  E-value=0.00085  Score=62.91  Aligned_cols=116  Identities=10%  Similarity=0.104  Sum_probs=75.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |.||+++|. |.||..+++.+.+ .++++. ++|++.  .....+.    ..++....+.+++++      .+|+||-+.
T Consensus         1 m~~Ig~IGl-G~mG~~mA~~l~~-~G~~V~-v~d~~~--~~~~~~~----~~g~~~~~s~~~~~~------~aDvVi~~v   65 (296)
T PRK15461          1 MAAIAFIGL-GQMGSPMASNLLK-QGHQLQ-VFDVNP--QAVDALV----DKGATPAASPAQAAA------GAEFVITML   65 (296)
T ss_pred             CCeEEEEee-CHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEec
Confidence            358999997 9999999999875 467764 577643  2223332    235556678888774      789999777


Q ss_pred             CchhHHH-HHH------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          115 DASTVYD-NVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       115 ~p~~~~~-~~~------~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      +++...+ .+.      .++..|. +|+-++..+++..+++.+..++.++..+=+|-+.
T Consensus        66 p~~~~~~~vl~~~~~i~~~l~~g~-lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g  123 (296)
T PRK15461         66 PNGDLVRSVLFGENGVCEGLSRDA-LVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR  123 (296)
T ss_pred             CCHHHHHHHHcCcccHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence            6664333 321      1123343 4455555566777888888888888877677654

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.58  E-value=0.00059  Score=62.78  Aligned_cols=93  Identities=8%  Similarity=0.035  Sum_probs=62.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |||+|+|+ |.||..+++.+.+...   -++.+ ++++.            ...++....+.+++++      ++|+||-
T Consensus         4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~-~~~~~------------~~~~~~~~~~~~~~~~------~~D~Vil   63 (260)
T PTZ00431          4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYY-HTPSK------------KNTPFVYLQSNEELAK------TCDIIVL   63 (260)
T ss_pred             CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEE-ECCCh------------hcCCeEEeCChHHHHH------hCCEEEE
Confidence            68999998 9999999999986532   23433 34322            0122334456666663      7899999


Q ss_pred             cCCchhHHHHHHHHHH--cCCCEEEeCCCCCHHHHHHH
Q 022250          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSAL  148 (300)
Q Consensus       113 fT~p~~~~~~~~~al~--~G~~vVigTTG~~~e~~~~L  148 (300)
                      ++.|....+.+.....  .+..+|+-..|.+.++++.+
T Consensus        64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~  101 (260)
T PTZ00431         64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEM  101 (260)
T ss_pred             EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHH
Confidence            9999988887776543  24456666668887665554

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=97.57  E-value=0.00022  Score=68.39  Aligned_cols=98  Identities=21%  Similarity=0.219  Sum_probs=66.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhh--c----CcCCCCccee--c
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVC--D----MEQPLEIPVM--S   92 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~--g----~~~~~gv~v~--~   92 (300)
                      |++||+|+|+ ||+||.+.+.+.+.+++|+|++=|...             .|+--+++.  |    . ....++++  .
T Consensus         1 m~~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v-~g~~I~v~~~~   78 (343)
T PRK07729          1 MKTKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLV-DGKKIRLLNNR   78 (343)
T ss_pred             CceEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEE-CCEEEEEEEcC
Confidence            5689999998 999999999988778999999866210             111000000  0    0 00123333  2


Q ss_pred             CHHHHHhcccc-cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250           93 DLTMVLGSISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus        93 dl~~~l~~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      |++++-    | +.++|+|+++|-.....+.+..++++|..+|+=+
T Consensus        79 dp~~~~----W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (343)
T PRK07729         79 DPKELP----WTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT  120 (343)
T ss_pred             ChhhCc----ccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence            454431    2 1479999999999999999999999998777655

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.57  E-value=0.00047  Score=63.94  Aligned_cols=118  Identities=13%  Similarity=0.148  Sum_probs=79.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |+||+++|+ |+||++++.-+.+...+  +-+-+.++..  .....+.   ..+|+.+++|.+++.      ...|+|+-
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~--e~~~~l~---~~~g~~~~~~~~~~~------~~advv~L   68 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSE--EKRAALA---AEYGVVTTTDNQEAV------EEADVVFL   68 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCH--HHHHHHH---HHcCCcccCcHHHHH------hhCCEEEE
Confidence            579999998 99999999999876522  3344555432  1111233   456776666776776      47899999


Q ss_pred             cCCchhHHHHHHHHH--HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCCcHHH
Q 022250          113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS  169 (300)
Q Consensus       113 fT~p~~~~~~~~~al--~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~SiGv  169 (300)
                      ...|....+.+....  ..++.+|+=.-|.+-++++.+   .-.  .+++ .=||..--+
T Consensus        69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~---l~~--~~vvR~MPNt~a~v  123 (266)
T COG0345          69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIETLERL---LGG--LRVVRVMPNTPALV  123 (266)
T ss_pred             EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHH---cCC--CceEEeCCChHHHH
Confidence            999998888887775  467777777779987665444   322  3444 337765433

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=97.57  E-value=0.00026  Score=67.60  Aligned_cols=136  Identities=18%  Similarity=0.147  Sum_probs=78.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhc---CCcEEEEEEecCCC-------------Ccc------hhhhhcCcCCCCccee--c
Q 022250           37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSV-------------GED------IGMVCDMEQPLEIPVM--S   92 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~-------------g~d------~~~~~g~~~~~gv~v~--~   92 (300)
                      ||+|+|+ ||+||.+.+++.+.   ++++++++.|....             |+-      .+..+-. ....+.++  .
T Consensus         1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v-~g~~i~v~~~~   78 (325)
T TIGR01532         1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHV-NGDCIRVLHSP   78 (325)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEE-CCeEEEEEEcC
Confidence            6999998 99999999998865   46999998873210             000      0000000 00123333  2


Q ss_pred             CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEE-EeCCC-CCHHH--HHHH--HHHhhhCCCeEEEcCCCc
Q 022250           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVPH-IQLET--VSAL--SAFCDKASMGCLIAPTLS  166 (300)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vV-igTTG-~~~e~--~~~L--~~~a~~~~i~iv~a~N~S  166 (300)
                      +++++-=   .+.++|+|+++|.+..+.+.+..++++|..+| +..|. .+.+.  ...+  +.+..+  -.++  +|=|
T Consensus        79 ~p~~~~w---~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~--~~II--Snas  151 (325)
T TIGR01532        79 TPEALPW---RALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAE--HTIV--SNAS  151 (325)
T ss_pred             Chhhccc---cccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCC--CCEE--eCCC
Confidence            4444320   02479999999999999999999999995555 54441 11110  0000  112112  2344  6667


Q ss_pred             HHHHHHHHHHHHhcc
Q 022250          167 IGSILLQQAAISASF  181 (300)
Q Consensus       167 iGv~ll~~~a~~~~~  181 (300)
                      --.|-|.-+++.+-+
T Consensus       152 CtTn~lap~lk~L~~  166 (325)
T TIGR01532       152 CTTNCIVPLIKLLDD  166 (325)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            777766666666643

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.55  E-value=0.00052  Score=65.28  Aligned_cols=128  Identities=16%  Similarity=0.183  Sum_probs=83.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEE-EEEEecC------CCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSH------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL-vg~vd~~------~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (300)
                      |+||+|+|+ |..|.+++..+.+.- .++ ....|..      ..-++...+-|..-+.++..++|++++++      ++
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------GA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------cC
Confidence            479999998 999999999887653 332 2333311      00011112223333456777899999994      69


Q ss_pred             cEEEEcCCchhHHHHHHH---HHHcCCCEEEeCCCCCHHHHHHHHHHhhh----CCCeEEEcCCCcHHHH
Q 022250          108 AVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGCLIAPTLSIGSI  170 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~---al~~G~~vVigTTG~~~e~~~~L~~~a~~----~~i~iv~a~N~SiGv~  170 (300)
                      |+|+-..+.....+.+..   .+..+.++|+.|-|+.++-.+.+.+..++    ..+.++-.|||+-=|.
T Consensus        73 d~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa  142 (329)
T COG0240          73 DIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVA  142 (329)
T ss_pred             CEEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHh
Confidence            999866655555555554   45788999999889876544444444332    2377888899987765

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.53  E-value=0.0013  Score=62.63  Aligned_cols=124  Identities=15%  Similarity=0.123  Sum_probs=82.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~-~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |+||+|+|+||-.|+.+++.+.+ ++.++.+.++.+ +..|+...++.++    .+.+-++..+...    ..++|+++ 
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~----~~~v~~~~~~~~~----~~~~Divf-   71 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK----SIGVPEDAADEFV----FSDVDIVF-   71 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc----cccCccccccccc----cccCCEEE-
Confidence            58999999999999999999988 788886666654 4567775556543    1333332222222    14689887 


Q ss_pred             cCCc-hhHHHHHHHHHHcCCCEEEeCCCCCHH----------HHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          113 FTDA-STVYDNVKQATAFGMRSVVYVPHIQLE----------TVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       113 fT~p-~~~~~~~~~al~~G~~vVigTTG~~~e----------~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      |+.+ +...++...+.++|+.|+.-+..|-.+          ..+.|.+.-+ +| .++--||=|.-.
T Consensus        72 ~~ag~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg-~IianpNCst~~  137 (334)
T COG0136          72 FAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RG-FIIANPNCSTIQ  137 (334)
T ss_pred             EeCchHHHHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhhh-CC-CEEECCChHHHH
Confidence            6654 666899999999998887666544211          1123555444 33 588999988763

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.53  E-value=0.00063  Score=65.25  Aligned_cols=86  Identities=13%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH-HHHhcccccCCccEEEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVIDf  113 (300)
                      ||+|+|++|..|+.+++.+.+  +|..+|+.+......|+... +.|    .... ..+++ +.+      .++|+|+.+
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~~-~~~~~~~~~------~~~D~v~~a   68 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KELE-VNEAKIESF------EGIDIALFS   68 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeEE-EEeCChHHh------cCCCEEEEC
Confidence            699999999999999999987  67788876655444444432 111    1122 22222 233      378999988


Q ss_pred             CCchhHHHHHHHHHHcCCCEE
Q 022250          114 TDASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV  134 (300)
                      +......+.+..+++.|+.||
T Consensus        69 ~g~~~s~~~a~~~~~~G~~VI   89 (339)
T TIGR01296        69 AGGSVSKEFAPKAAKCGAIVI   89 (339)
T ss_pred             CCHHHHHHHHHHHHHCCCEEE
Confidence            888888999999999998655

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.48  E-value=0.00065  Score=65.35  Aligned_cols=117  Identities=15%  Similarity=0.204  Sum_probs=75.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVV  110 (300)
                      .+||+|+|+||-.|+.+++.+.++|+++   |..+......|+... +.+    ..+.+. .|.++ +      .++|+|
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~----~~l~v~~~~~~~-~------~~~Div   72 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG----REIIIQEAKINS-F------EGVDIA   72 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC----cceEEEeCCHHH-h------cCCCEE
Confidence            3799999999999999999998889998   555544444555542 221    133333 23333 3      368999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCC-------------CCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-------------HIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTT-------------G~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l  171 (300)
                      +=.+..+...+.+..+.++|+.||-=+.             .++.+   .|.+   ++  .++-.||=+.-..+
T Consensus        73 f~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e---~i~~---~~--~iIanPnC~tt~~~  138 (347)
T PRK06728         73 FFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAH---TLKE---HK--GIIAVPNCSALQMV  138 (347)
T ss_pred             EECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHH---HHhc---cC--CEEECCCCHHHHHH
Confidence            8445666678888899999987774432             22333   3332   12  46888887765443

>PLN02712 arogenate dehydrogenase

Probab=97.47  E-value=0.0017  Score=67.62  Aligned_cols=125  Identities=17%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             EeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccC
Q 022250           26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        26 ~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (300)
                      +|..+.  +++||+|+|+ |+||+.+++.+.+ .+.+++ ++|++.  . . +.+   ...|+..+.++++++.     .
T Consensus       362 ~~~~~~--~~~kIgIIGl-G~mG~slA~~L~~-~G~~V~-~~dr~~--~-~-~~a---~~~Gv~~~~~~~el~~-----~  424 (667)
T PLN02712        362 GCVNDG--SKLKIAIVGF-GNFGQFLAKTMVK-QGHTVL-AYSRSD--Y-S-DEA---QKLGVSYFSDADDLCE-----E  424 (667)
T ss_pred             hccCCC--CCCEEEEEec-CHHHHHHHHHHHH-CcCEEE-EEECCh--H-H-HHH---HHcCCeEeCCHHHHHh-----c
Confidence            455554  3589999997 9999999999875 567877 566542  1 1 111   2345666788888774     3


Q ss_pred             CccEEEEcCCchhHHHHHHHHHH--c-CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCCcHH
Q 022250          106 ARAVVIDFTDASTVYDNVKQATA--F-GMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG  168 (300)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~--~-G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~SiG  168 (300)
                      .+|+||-+++|....+.+.....  . .-.+|+-.+.-...-.+.+.+... .+..++ .-|++..-
T Consensus       425 ~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e  490 (667)
T PLN02712        425 HPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPE  490 (667)
T ss_pred             CCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCcc
Confidence            58999988888887777765543  1 123555544332223344554433 245555 67777654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.46  E-value=0.001  Score=62.59  Aligned_cols=104  Identities=20%  Similarity=0.151  Sum_probs=63.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .|||+|+|+ |.||+.+++.+.. .++++. +++++.                   ..+++++++      ++|+||-+.
T Consensus         4 ~m~I~iiG~-G~~G~~lA~~l~~-~G~~V~-~~~r~~-------------------~~~~~~~~~------~advvi~~v   55 (308)
T PRK14619          4 PKTIAILGA-GAWGSTLAGLASA-NGHRVR-VWSRRS-------------------GLSLAAVLA------DADVIVSAV   55 (308)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHH-CCCEEE-EEeCCC-------------------CCCHHHHHh------cCCEEEEEC
Confidence            378999997 9999999998874 467765 566542                   135667763      789999666


Q ss_pred             CchhHHHHHHHHHH----cCCCEEEeCCCCCHHHHHHHHHHhhh--CCCeEE--EcCCCc
Q 022250          115 DASTVYDNVKQATA----FGMRSVVYVPHIQLETVSALSAFCDK--ASMGCL--IAPTLS  166 (300)
Q Consensus       115 ~p~~~~~~~~~al~----~G~~vVigTTG~~~e~~~~L~~~a~~--~~i~iv--~a~N~S  166 (300)
                      +.+.+.+.+.....    .++-+|..|+|++++....+.+..+.  ...|++  ..|+++
T Consensus        56 p~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a  115 (308)
T PRK14619         56 SMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLS  115 (308)
T ss_pred             ChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence            65555555544432    34556666667765432222222111  123443  677766

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.44  E-value=0.00067  Score=61.85  Aligned_cols=95  Identities=21%  Similarity=0.318  Sum_probs=58.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC--------C----cchhhhhcC-cCCCC----cce-------e
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------G----EDIGMVCDM-EQPLE----IPV-------M   91 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--------g----~d~~~~~g~-~~~~g----v~v-------~   91 (300)
                      |+|+++|- ||||..+++.+. +.+.++|+ +|.+..        |    ....+++.. ..+.-    +|.       .
T Consensus         1 M~iGmiGL-GrMG~n~v~rl~-~~ghdvV~-yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi   77 (300)
T COG1023           1 MQIGMIGL-GRMGANLVRRLL-DGGHDVVG-YDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI   77 (300)
T ss_pred             Ccceeecc-chhhHHHHHHHH-hCCCeEEE-EcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH
Confidence            57999997 999999999988 46889886 564311        0    011122210 00100    111       1


Q ss_pred             cCHHHHHhcccccCCccEEEEc--CCchhHHHHHHHHHHcCCCEE-EeCCC
Q 022250           92 SDLTMVLGSISQSKARAVVIDF--TDASTVYDNVKQATAFGMRSV-VYVPH  139 (300)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDf--T~p~~~~~~~~~al~~G~~vV-igTTG  139 (300)
                      +++...|      ..-|+|||-  |+-.......+.+.++|++.+ +||.|
T Consensus        78 ~~la~~L------~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG  122 (300)
T COG1023          78 DDLAPLL------SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG  122 (300)
T ss_pred             HHHHhhc------CCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence            2333333      356999996  455666777788999999999 78864

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=97.42  E-value=0.0005  Score=67.72  Aligned_cols=140  Identities=17%  Similarity=0.106  Sum_probs=80.7

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhh-------hcCcCCCCcc
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMV-------CDMEQPLEIP   89 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~-------~g~~~~~gv~   89 (300)
                      +.|++||+|+|+ ||+||.+.+.+.+.  +++|+|++=|...             .|+--+++       +-. ....+.
T Consensus        72 ~~~~ikVgINGF-GRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v-~Gk~I~  149 (442)
T PLN02237         72 TVAKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISV-DGKPIK  149 (442)
T ss_pred             ccceEEEEEECC-ChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEE-CCEEEE
Confidence            347799999998 99999999987655  6899999866210             11100000       000 001122


Q ss_pred             eec--CHHHHHhcccc-cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHH-HHH----HH--HHHhhhCCCeE
Q 022250           90 VMS--DLTMVLGSISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE-TVS----AL--SAFCDKASMGC  159 (300)
Q Consensus        90 v~~--dl~~~l~~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e-~~~----~L--~~~a~~~~i~i  159 (300)
                      +++  |++++-    | +.++|+|+++|-.....+.+...++.|...|+=+ .+..+ +..    .+  +.+..+ .-.+
T Consensus       150 V~~~~dp~~l~----W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~dvptvV~GVN~~~~~~~-~~~I  223 (442)
T PLN02237        150 VVSNRDPLKLP----WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEDDYDHE-VANI  223 (442)
T ss_pred             EEEcCCchhCC----hhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCCCCceEecccCHHHhCcC-CCCE
Confidence            221  222221    1 1478999999988888999999999998777655 22111 000    00  111111 0233


Q ss_pred             EEcCCCcHHHHHHHHHHHHhcc
Q 022250          160 LIAPTLSIGSILLQQAAISASF  181 (300)
Q Consensus       160 v~a~N~SiGv~ll~~~a~~~~~  181 (300)
                      +  +|=|--.|-|.-+++.+-+
T Consensus       224 I--SnaSCTTNcLAPvlkvL~d  243 (442)
T PLN02237        224 V--SNASCTTNCLAPFVKVLDE  243 (442)
T ss_pred             E--ECCchHHHHHHHHHHHHHH
Confidence            4  6667777777666666643

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.40  E-value=0.0017  Score=60.47  Aligned_cols=113  Identities=16%  Similarity=0.160  Sum_probs=74.9

Q ss_pred             EEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCchh-
Q 022250           40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-  118 (300)
Q Consensus        40 V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~-  118 (300)
                      ++|. |.||..+++.+.+ .++++. ++|++.  .....+.    +.|+...++++++++      ++|+||-+.++.. 
T Consensus         1 ~IGl-G~mG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLK-AGHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH   65 (288)
T ss_pred             CCcc-cHhHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence            4787 9999999999875 567765 467643  2222232    346667788888874      7899997776534 


Q ss_pred             HHHHH---HHHH---HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          119 VYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       119 ~~~~~---~~al---~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      +.+.+   ....   ..| .+|+-+++.+++..+++.+.+++.|+..+-+| .|=|.
T Consensus        66 ~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP-v~Gg~  120 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAP-VSGGV  120 (288)
T ss_pred             HHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECC-CCCCH
Confidence            34443   2222   333 36666667778888889998888888877765 44343

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=97.34  E-value=0.00049  Score=65.87  Aligned_cols=98  Identities=17%  Similarity=0.181  Sum_probs=62.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhh------hcCcCCCCcceec-
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMV------CDMEQPLEIPVMS-   92 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~------~g~~~~~gv~v~~-   92 (300)
                      |+||+|+|. ||+||.+.+.+.+.  +++|+|++-|...             .|+--+++      +-. ....+.++. 
T Consensus         1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v-~g~~I~v~~~   78 (337)
T PRK07403          1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITV-NGKTIKCVSD   78 (337)
T ss_pred             CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEE-CCEEEEEEEc
Confidence            689999998 99999999997766  5899999876310             01100000      000 001233332 


Q ss_pred             -CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250           93 -DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus        93 -dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                       |++++-=   .+.++|+|+++|......+.+...++.|...|+-+
T Consensus        79 ~dp~~~~W---~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS  121 (337)
T PRK07403         79 RNPLNLPW---KEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT  121 (337)
T ss_pred             CCcccCCh---hhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence             2333210   01379999999988888999999999997777544

>PLN02256 arogenate dehydrogenase

Probab=97.34  E-value=0.0031  Score=59.58  Aligned_cols=77  Identities=16%  Similarity=0.161  Sum_probs=56.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|+ |.||+.+++.+.+ .+.++.+ +|++..    .+.+   ...|+..+++.++++.     .++|+||-++
T Consensus        36 ~~kI~IIG~-G~mG~slA~~L~~-~G~~V~~-~d~~~~----~~~a---~~~gv~~~~~~~e~~~-----~~aDvVilav  100 (304)
T PLN02256         36 KLKIGIVGF-GNFGQFLAKTFVK-QGHTVLA-TSRSDY----SDIA---AELGVSFFRDPDDFCE-----EHPDVVLLCT  100 (304)
T ss_pred             CCEEEEEee-CHHHHHHHHHHHh-CCCEEEE-EECccH----HHHH---HHcCCeeeCCHHHHhh-----CCCCEEEEec
Confidence            589999997 9999999999875 4678774 665421    1111   2346666788888763     3689999999


Q ss_pred             CchhHHHHHHHH
Q 022250          115 DASTVYDNVKQA  126 (300)
Q Consensus       115 ~p~~~~~~~~~a  126 (300)
                      +|....+.+...
T Consensus       101 p~~~~~~vl~~l  112 (304)
T PLN02256        101 SILSTEAVLRSL  112 (304)
T ss_pred             CHHHHHHHHHhh
Confidence            998888877665

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.34  E-value=0.00055  Score=66.75  Aligned_cols=134  Identities=17%  Similarity=0.133  Sum_probs=83.1

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCc---c----hhhhhcCcCCCCcc
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGE---D----IGMVCDMEQPLEIP   89 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~---d----~~~~~g~~~~~gv~   89 (300)
                      +.|++||+|+|+ ||+||.+.+.+.+.  +..+|+++=|...             .|+   +    .+..+-. ....++
T Consensus        57 ~~~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v-~gk~I~  134 (395)
T PLN03096         57 TEAKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISV-DGKVIK  134 (395)
T ss_pred             cccccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEE-CCEEEE
Confidence            346799999999 99999999998766  6899998754210             000   0    0000000 001233


Q ss_pred             eec--CHHHHHhcccc-cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-----------CCCHHHHHHHHHHhhhC
Q 022250           90 VMS--DLTMVLGSISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-----------HIQLETVSALSAFCDKA  155 (300)
Q Consensus        90 v~~--dl~~~l~~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-----------G~~~e~~~~L~~~a~~~  155 (300)
                      ++.  |++++-    + +.++|+|+++|-.....+.+...+++|...|+=+-           |.++++   +.   .+ 
T Consensus       135 v~~~~dp~~~~----w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~---l~---~~-  203 (395)
T PLN03096        135 VVSDRNPLNLP----WGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADD---YK---HS-  203 (395)
T ss_pred             EEEcCCccccc----ccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHH---hc---cC-
Confidence            332  344431    1 14799999999988889999999999977775542           223332   21   12 


Q ss_pred             CCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022250          156 SMGCLIAPTLSIGSILLQQAAISASF  181 (300)
Q Consensus       156 ~i~iv~a~N~SiGv~ll~~~a~~~~~  181 (300)
                       -.++  +|=|--.|-|.-+++.+-+
T Consensus       204 -~~II--SnaSCTTn~LAp~lkvL~~  226 (395)
T PLN03096        204 -DPII--SNASCTTNCLAPFVKVLDQ  226 (395)
T ss_pred             -CCEE--ECCchHHHHHHHHHHHHHH
Confidence             2333  7888888877777776653

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=97.31  E-value=0.00055  Score=65.59  Aligned_cols=137  Identities=17%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCc---c---hhhhhcCcCCCCccee-
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGE---D---IGMVCDMEQPLEIPVM-   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~---d---~~~~~g~~~~~gv~v~-   91 (300)
                      |+||+|+|+ |++||.+.+.+.+.   ++++|+++=|..             ..|+   +   .+..+-. ....+.++ 
T Consensus         1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v-~g~~i~v~~   78 (336)
T PRK13535          1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFV-GDDAIRLLH   78 (336)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEE-CCEEEEEEE
Confidence            579999999 99999999998763   579999876411             0010   0   0000000 01123333 


Q ss_pred             -cCHHHHHhcccc-cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHH-HH---HHH--HHHhhhCCCeEEEcC
Q 022250           92 -SDLTMVLGSISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE-TV---SAL--SAFCDKASMGCLIAP  163 (300)
Q Consensus        92 -~dl~~~l~~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e-~~---~~L--~~~a~~~~i~iv~a~  163 (300)
                       .+++++-    + +.++|+|+++|......+.+..++++|..+|+=+.-+..+ ..   ..+  +++..+  -.++  +
T Consensus        79 ~~~p~~~~----w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~--~~II--S  150 (336)
T PRK13535         79 ERDIASLP----WRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAE--HRIV--S  150 (336)
T ss_pred             cCCcccCc----ccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcC--CCEE--E
Confidence             2444431    1 1489999999999999999999999997777654322111 00   000  111122  2344  6


Q ss_pred             CCcHHHHHHHHHHHHhcc
Q 022250          164 TLSIGSILLQQAAISASF  181 (300)
Q Consensus       164 N~SiGv~ll~~~a~~~~~  181 (300)
                      |=|--.|-|.-+++.+-+
T Consensus       151 nasCTTn~Lap~lk~L~~  168 (336)
T PRK13535        151 NASCTTNCIIPVIKLLDD  168 (336)
T ss_pred             CCchHHHHHHHHHHHHHH
Confidence            667777766666666543

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.28  E-value=0.0018  Score=65.09  Aligned_cols=119  Identities=16%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCc-chhhh-----------hcCc-CCCC-cceecCHHHHHhc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE-DIGMV-----------CDME-QPLE-IPVMSDLTMVLGS  100 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~-d~~~~-----------~g~~-~~~g-v~v~~dl~~~l~~  100 (300)
                      .+||+|+|+ |.||..++..+.. .++++. ++|++.... ...+.           .+.. ...+ +.+.+|++++++ 
T Consensus         4 i~kIavIG~-G~MG~~iA~~la~-~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~-   79 (495)
T PRK07531          4 IMKAACIGG-GVIGGGWAARFLL-AGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA-   79 (495)
T ss_pred             cCEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc-
Confidence            358999998 9999999998875 578765 577542100 11000           0000 0112 556788888874 


Q ss_pred             ccccCCccEEEEcCCchhH-HHH----HHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          101 ISQSKARAVVIDFTDASTV-YDN----VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~-~~~----~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                           ++|+||...+++.. ...    +...+..+.-+.+.|.|++..+   |.+.+.+.+..++..||-
T Consensus        80 -----~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~hP~n  141 (495)
T PRK07531         80 -----GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAHPYN  141 (495)
T ss_pred             -----CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEecCC
Confidence                 79999987765542 222    2233333443444455887654   455555555566666654

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.28  E-value=0.00099  Score=60.42  Aligned_cols=118  Identities=18%  Similarity=0.221  Sum_probs=76.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCcCCCC-cc-----eecCHHHHHhccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSIS  102 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~g-v~-----v~~dl~~~l~~~~  102 (300)
                      +.+||+|.|+ |++|+.+++.+.+ .+.+++++.|.     ++.|-|..++.....+.+ +.     .+-+.++++.   
T Consensus        30 ~~~~v~I~G~-G~VG~~~a~~L~~-~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~---  104 (227)
T cd01076          30 AGARVAIQGF-GNVGSHAARFLHE-AGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE---  104 (227)
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence            4589999997 9999999998875 69999999995     334556555432111111 11     1113455664   


Q ss_pred             ccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                        .++||+|.++.+... .+++.   +-...+|+|--  .++++..+.|    +++  .++|.|-|..
T Consensus       105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~r--Gi~~~PD~~a  161 (227)
T cd01076         105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HER--GVLVVPDILA  161 (227)
T ss_pred             --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HHC--CCEEEChHHh
Confidence              589999999977665 33444   44699999976  4665443333    443  5688888765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.26  E-value=0.0049  Score=59.00  Aligned_cols=126  Identities=11%  Similarity=0.088  Sum_probs=71.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhh-cCcCCCCcceecCHHHHHhcccccCCc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (300)
                      |+||+|+|+ |.||..++..+.+.. .......++..      .+.....+- +..-+..+.+++|+++++      .++
T Consensus         7 ~mkI~IiGa-Ga~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~------~~a   78 (341)
T PRK12439          7 EPKVVVLGG-GSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAA------NCA   78 (341)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHH------hcC
Confidence            689999998 999999999887653 22222222110      011100010 110012345677888877      378


Q ss_pred             cEEEEcCCchhHHHHHHHHH---HcCCCEEEeCCCCCHHH----HHHHHHHhhhCCCeEEEcCCCcHH
Q 022250          108 AVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSIG  168 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al---~~G~~vVigTTG~~~e~----~~~L~~~a~~~~i~iv~a~N~SiG  168 (300)
                      |+||-++++..+.+.++...   ..+.++|+-+-|+..+.    .+.|.+......+.++..||+.-=
T Consensus        79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~e  146 (341)
T PRK12439         79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIARE  146 (341)
T ss_pred             CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHH
Confidence            99997887777666665544   33445666555876421    123333322223557888998874

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.26  E-value=0.0019  Score=57.57  Aligned_cols=111  Identities=19%  Similarity=0.275  Sum_probs=71.2

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce----ecC---HHHHHhcccccCCccEE
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARAVV  110 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~DVV  110 (300)
                      |+|+|+||++|+.+++.+.+ +++++.+.+.... ...+..+-    ..|+.+    ++|   +.+++      .++|+|
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al------~g~d~v   68 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL------KGVDAV   68 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH------TTCSEE
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH------cCCceE
Confidence            78999999999999999987 8899988876431 01112221    223322    233   44455      589999


Q ss_pred             EEcCC------chhHHHHHHHHHHcCCCEEEeCC-C--C------C-H----HHHHHHHHHhhhCCCeEE
Q 022250          111 IDFTD------ASTVYDNVKQATAFGMRSVVYVP-H--I------Q-L----ETVSALSAFCDKASMGCL  160 (300)
Q Consensus       111 IDfT~------p~~~~~~~~~al~~G~~vVigTT-G--~------~-~----e~~~~L~~~a~~~~i~iv  160 (300)
                      +-.+.      .+.....+..|.++|+..++=++ +  .      . .    +....++++.++.+++..
T Consensus        69 ~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t  138 (233)
T PF05368_consen   69 FSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYT  138 (233)
T ss_dssp             EEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBE
T ss_pred             EeecCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccce
Confidence            97776      23456788899999998887442 1  1      1 1    223467888888777655

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.23  E-value=0.0061  Score=57.24  Aligned_cols=102  Identities=17%  Similarity=0.142  Sum_probs=60.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ..||+|+|+ |.||..++..+.+..- .++ -++|++.  ......    ...|+  .+..++++++      .++|+||
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V-~~~dr~~--~~~~~a----~~~g~~~~~~~~~~~~~------~~aDvVi   71 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEI-VGADRSA--ETRARA----RELGLGDRVTTSAAEAV------KGADLVI   71 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEE-EEEECCH--HHHHHH----HhCCCCceecCCHHHHh------cCCCEEE
Confidence            468999997 9999999998875432 244 4667642  111111    12232  2346777776      3789999


Q ss_pred             EcCCchhHHHHHHHHH---HcCCCEEEeCCCCCHHHHHHHHHH
Q 022250          112 DFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAF  151 (300)
Q Consensus       112 DfT~p~~~~~~~~~al---~~G~~vVigTTG~~~e~~~~L~~~  151 (300)
                      .++++....+.+....   ..+. +|+-..+.+.+..+.+.+.
T Consensus        72 iavp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~  113 (307)
T PRK07502         72 LCVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPH  113 (307)
T ss_pred             ECCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHh
Confidence            8888877655554433   3333 4444444444444444443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.23  E-value=0.00089  Score=55.93  Aligned_cols=110  Identities=18%  Similarity=0.096  Sum_probs=65.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc----ceecCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI----PVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv----~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      ..||+|+|+ |.||+.+++.+.+.. .+-+.++|++.  .....++   ...+.    ..+.+.++++      .++|+|
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~Dvv   85 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL--EKAKALA---ERFGELGIAIAYLDLEELL------AEADLI   85 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH--HHHHHHH---HHHhhcccceeecchhhcc------ccCCEE
Confidence            478999998 999999999987653 44455667542  1222222   11121    1245666665      479999


Q ss_pred             EEcCCchhH----HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250          111 IDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       111 IDfT~p~~~----~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      |..+++..+    .......++.+.-++--.+. ....  .+.+.+++.|+.++
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~-~~~~--~l~~~~~~~g~~~v  136 (155)
T cd01065          86 INTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN-PLET--PLLKEARALGAKTI  136 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC-CCCC--HHHHHHHHCCCcee
Confidence            988877664    11223445666655533221 1111  57777788777655

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.19  E-value=0.0013  Score=61.08  Aligned_cols=109  Identities=16%  Similarity=0.216  Sum_probs=78.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE--EEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV--VID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV--VID  112 (300)
                      .+|.|+|.  |.|+....++... |++||+|++....  +...+++   ..+|||.|...|++-+      ++|+  |+.
T Consensus         5 ksVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLA---h~~GVply~~~eelpd------~idiACVvV   71 (361)
T COG4693           5 KSVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVVV   71 (361)
T ss_pred             ceEEEecc--hHHHHHHHHhccCCCCceeehhhhccc--HHHHHHH---HHhCCccccCHhhCCC------CCCeEEEEE
Confidence            48999996  9999999988876 8999999987532  2234455   5789999999999864      5663  332


Q ss_pred             cCC--chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCe
Q 022250          113 FTD--ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (300)
Q Consensus       113 fT~--p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~  158 (300)
                      -|.  -..--+.++..++.|++|+.+-+-. ++++.++.++|++.|..
T Consensus        72 rsai~Gg~Gs~larall~RGi~VlqEHPl~-p~di~~l~rlA~rqG~~  118 (361)
T COG4693          72 RSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRR  118 (361)
T ss_pred             eeeeecCCcHHHHHHHHHcccHHHHhCCCC-HHHHHHHHHHHHHhCcE
Confidence            232  2334677888899999999887754 34566677777766544

>PLN02712 arogenate dehydrogenase

Probab=97.17  E-value=0.0058  Score=63.73  Aligned_cols=78  Identities=14%  Similarity=0.184  Sum_probs=56.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .++||+|+|+ |+||+.+++.+.+. ++++++ +|++.. .   ..+   ...|+..+.|+++++.     ..+|+||.+
T Consensus        51 ~~~kIgIIG~-G~mG~slA~~L~~~-G~~V~~-~dr~~~-~---~~A---~~~Gv~~~~d~~e~~~-----~~aDvViLa  115 (667)
T PLN02712         51 TQLKIAIIGF-GNYGQFLAKTLISQ-GHTVLA-HSRSDH-S---LAA---RSLGVSFFLDPHDLCE-----RHPDVILLC  115 (667)
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHC-CCEEEE-EeCCHH-H---HHH---HHcCCEEeCCHHHHhh-----cCCCEEEEc
Confidence            3689999997 99999999998754 688766 555321 1   111   2456667788888663     368999999


Q ss_pred             CCchhHHHHHHHH
Q 022250          114 TDASTVYDNVKQA  126 (300)
Q Consensus       114 T~p~~~~~~~~~a  126 (300)
                      ++++...+.+...
T Consensus       116 vP~~~~~~vl~~l  128 (667)
T PLN02712        116 TSIISTENVLKSL  128 (667)
T ss_pred             CCHHHHHHHHHhh
Confidence            9988877777654

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=97.17  E-value=0.0023  Score=60.65  Aligned_cols=78  Identities=14%  Similarity=0.099  Sum_probs=59.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .||+|+|++|-+|..+++.+..+|++||+.+.....       +    .      ..+.++++      .++|+|+=+++
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------~----~------~~~~~~~~------~~~D~vFlalp   58 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------K----D------AAERAKLL------NAADVAILCLP   58 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------c----C------cCCHhHhh------cCCCEEEECCC
Confidence            489999999999999999999999999999865431       0    0      01334554      36899985666


Q ss_pred             chhHHHHHHHHHHcCCCEEEe
Q 022250          116 ASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVig  136 (300)
                      .+...+.+..+.+.|+.||-=
T Consensus        59 ~~~s~~~~~~~~~~g~~VIDl   79 (310)
T TIGR01851        59 DDAAREAVSLVDNPNTCIIDA   79 (310)
T ss_pred             HHHHHHHHHHHHhCCCEEEEC
Confidence            677788888888899976643

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.13  E-value=0.0068  Score=60.68  Aligned_cols=115  Identities=13%  Similarity=0.151  Sum_probs=70.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |.+|+|+|. |.||+.+++.+.+ .++++. ++|++.  ....++.......|  +..+++++++++++   .++|+||-
T Consensus         1 ~~~IgvIGL-G~MG~~lA~nL~~-~G~~V~-v~dr~~--~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIGL-AVMGQNLALNIAS-RGFKIS-VYNRTY--EKTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL   72 (470)
T ss_pred             CCEEEEEeE-hHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence            468999997 9999999999885 577755 577653  12222221001113  34578999988521   25897776


Q ss_pred             c-CCchhHHHHHH---HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCe
Q 022250          113 F-TDASTVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (300)
Q Consensus       113 f-T~p~~~~~~~~---~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~  158 (300)
                      + ++++.+.+.+.   ..++.|.-+|-++|++..+..+.. +..+++|+.
T Consensus        73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~Gi~  121 (470)
T PTZ00142         73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEKGIL  121 (470)
T ss_pred             EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCe
Confidence            6 44555555543   345667777777777655444444 444445555

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.08  E-value=0.0082  Score=59.52  Aligned_cols=104  Identities=17%  Similarity=0.208  Sum_probs=64.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+|+|++|.||+.+++.+.+ .+.++. +++++.  ....+++   ...|+...++.++++      .++|+||-+++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~-~G~~V~-v~~r~~--~~~~~~a---~~~gv~~~~~~~e~~------~~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKE-KGFEVI-VTGRDP--KKGKEVA---KELGVEYANDNIDAA------KDADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHH-CCCEEE-EEECCh--HHHHHHH---HHcCCeeccCHHHHh------ccCCEEEEecC
Confidence            5899998559999999998875 466765 455542  1111222   234565667887777      37899998888


Q ss_pred             chhHHHHHHHHHHc-C-CCEEEeCCCCCHHHHHHHHHHh
Q 022250          116 ASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALSAFC  152 (300)
Q Consensus       116 p~~~~~~~~~al~~-G-~~vVigTTG~~~e~~~~L~~~a  152 (300)
                      ++...+.+...... . -.+|+-++.....-.+.+.+..
T Consensus        68 ~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~  106 (437)
T PRK08655         68 INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA  106 (437)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc
Confidence            88777766655442 1 1244444433333445555554

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.03  E-value=0.0021  Score=56.52  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |||+|+|++|+.|+.+++... ..++|+++++..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn   33 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRN   33 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeC
Confidence            799999999999999999977 579999999864

>PLN02522 ATP citrate (pro-S)-lyase

Probab=97.02  E-value=0.0034  Score=64.47  Aligned_cols=124  Identities=15%  Similarity=0.214  Sum_probs=80.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc------CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~------~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (300)
                      ..|-.++|.    ...-++..+..      +.-.+.+.+-+.. +.--.-+.|- ...++|||++++|+.++   ..++|
T Consensus        10 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~-~~~~iPVf~tv~eA~~~---~~~~~   80 (608)
T PLN02522         10 TTQALFYNY----KQLPVQRMLDFDFLCGRETPSVAGIINPGS-EGFQKLFFGQ-EEIAIPVHGSIEAACKA---HPTAD   80 (608)
T ss_pred             CceeEEEcC----cHHHHHhhhccceeccCCCCeeEEEEcCCC-CcceeEecCC-EeeCccccchHHHHHHh---CCCCc
Confidence            356677775    33334433321      1224455554422 1211223343 35689999999999973   23689


Q ss_pred             EEEEcCCchhHHHHH-HHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          109 VVIDFTDASTVYDNV-KQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       109 VVIDfT~p~~~~~~~-~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      +.|.|.+|..+.+-+ +.|.+.|++.++-.| |+.+....+|.++++++++. ++.|| ++|+
T Consensus        81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r-lIGPN-c~Gi  141 (608)
T PLN02522         81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV-VIGPA-TVGG  141 (608)
T ss_pred             EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE-EECCC-CCee
Confidence            999999887776554 555567988776554 99877778999999999986 78898 4554

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=97.01  E-value=0.0018  Score=63.57  Aligned_cols=132  Identities=18%  Similarity=0.165  Sum_probs=77.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh------cC--------c------CCCCccee--c
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC------DM--------E------QPLEIPVM--S   92 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~------g~--------~------~~~gv~v~--~   92 (300)
                      |+||+|+|. ||+||.+.+.+.+.++++++++-|+....+....++      |.        .      ....+.++  .
T Consensus        85 ~~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~  163 (421)
T PLN02272         85 KTKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR  163 (421)
T ss_pred             ceEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence            479999998 999999999987668999999877321001110000      00        0      00112222  1


Q ss_pred             CHHHHHhccccc-CCccEEEEcCCchhHHHHHHHHHHcCC-CEEEeCC---------CCCHHHHHHHHHHhhhCCCeEEE
Q 022250           93 DLTMVLGSISQS-KARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP---------HIQLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus        93 dl~~~l~~~~~~-~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigTT---------G~~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      +++++-    +. .++|+|+++|-.....+.+...++.|. .|||-.+         |.+.++   +.   .+  -.++ 
T Consensus       164 dp~~~~----w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~---l~---~~--~~II-  230 (421)
T PLN02272        164 DPAEIP----WGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKT---YK---PN--MNIV-  230 (421)
T ss_pred             CcccCc----ccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHH---hC---CC--CCee-
Confidence            333321    11 268999988888888888888888884 5555544         233332   21   12  2344 


Q ss_pred             cCCCcHHHHHHHHHHHHhcc
Q 022250          162 APTLSIGSILLQQAAISASF  181 (300)
Q Consensus       162 a~N~SiGv~ll~~~a~~~~~  181 (300)
                       +|=|--.|-|.-+++.+-+
T Consensus       231 -SnaSCTTn~Lap~lk~L~~  249 (421)
T PLN02272        231 -SNASCTTNCLAPLAKVVHE  249 (421)
T ss_pred             -eCCCcHHHHHHHHHHHHHH
Confidence             5666666766666666643

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.00  E-value=0.0067  Score=56.30  Aligned_cols=98  Identities=18%  Similarity=0.139  Sum_probs=58.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc-c-eecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-P-VMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~-v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |||+|+|+ |.||..++..+.+ .++++. ++|++.  .......    ..|. . ..++.+ .+      .++|+||.+
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~-~g~~V~-~~d~~~--~~~~~a~----~~g~~~~~~~~~~-~~------~~aDlVila   64 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRS-LGHTVY-GVSRRE--STCERAI----ERGLVDEASTDLS-LL------KDCDLVILA   64 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HCCCcccccCCHh-Hh------cCCCEEEEc
Confidence            48999997 9999999999875 467755 466542  1111111    1121 1 223443 44      478999989


Q ss_pred             CCchhHHHHHHHHHHc-C-CCEEEeCCCCCHHHHHHHH
Q 022250          114 TDASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALS  149 (300)
Q Consensus       114 T~p~~~~~~~~~al~~-G-~~vVigTTG~~~e~~~~L~  149 (300)
                      +++....+.+...... . -.+|+-+++...+..+.+.
T Consensus        65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~  102 (279)
T PRK07417         65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE  102 (279)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH
Confidence            8888887776655543 2 2344444455544444443

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=96.98  E-value=0.0029  Score=58.41  Aligned_cols=126  Identities=13%  Similarity=0.257  Sum_probs=76.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee------cCHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM------SDLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~------~dl~~~l~~~~~~~~~DV  109 (300)
                      |||.|.|+||- |+.+++.+.+ .++++++.+.... |...-.     ...+.++.      .++.+.+.    +.++|+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~-~g~~v~~s~~t~~-~~~~~~-----~~g~~~v~~g~l~~~~l~~~l~----~~~i~~   68 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIA-QGIEILVTVTTSE-GKHLYP-----IHQALTVHTGALDPQELREFLK----RHSIDI   68 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHh-CCCeEEEEEccCC-cccccc-----ccCCceEEECCCCHHHHHHHHH----hcCCCE
Confidence            58999999987 9999998875 4688887665432 211110     00112222      34555554    367999


Q ss_pred             EEEcCCchhH---HHHHHHHHHcCCCEE-EeCCCC------C-HHHHHHHHHHhhh---CCCeEEEcCCCcHHHHHHHHH
Q 022250          110 VIDFTDASTV---YDNVKQATAFGMRSV-VYVPHI------Q-LETVSALSAFCDK---ASMGCLIAPTLSIGSILLQQA  175 (300)
Q Consensus       110 VIDfT~p~~~---~~~~~~al~~G~~vV-igTTG~------~-~e~~~~L~~~a~~---~~i~iv~a~N~SiGv~ll~~~  175 (300)
                      |||+|+|-+.   ......|.+.|+|.+ ..=+.|      . -+..++..+++.+   .+-.+++    .+|++-+..+
T Consensus        69 VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~~~~~~i~l----ttG~k~l~~f  144 (256)
T TIGR00715        69 LVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPYLRGKRVFL----TAGASWLSHF  144 (256)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhccccCCcEEE----ecCcchHHHH
Confidence            9999999764   556678899999998 332322      1 0122333334443   2235565    7888777666


Q ss_pred             HH
Q 022250          176 AI  177 (300)
Q Consensus       176 a~  177 (300)
                      ..
T Consensus       145 ~~  146 (256)
T TIGR00715       145 SL  146 (256)
T ss_pred             hh
Confidence            53

This enzyme was found to be a monomer by gel filtration.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.96  E-value=0.0098  Score=55.79  Aligned_cols=114  Identities=19%  Similarity=0.178  Sum_probs=76.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      +||+.+|. |.||.-+++.+.+ .++++. ++|++.  ..+.+++   ...|.....+..++.+      .+|+||-+=+
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~-aG~~v~-v~~r~~--~ka~~~~---~~~Ga~~a~s~~eaa~------~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLK-AGHEVT-VYNRTP--EKAAELL---AAAGATVAASPAEAAA------EADVVITMLP   66 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHH-CCCEEE-EEeCCh--hhhhHHH---HHcCCcccCCHHHHHH------hCCEEEEecC
Confidence            58999996 9999999999884 578765 577653  1112222   2457777888877774      7899987654


Q ss_pred             -chhHHHHHH---HHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          116 -ASTVYDNVK---QATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       116 -p~~~~~~~~---~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                       ++.+.+.+.   -.++   .|.-+|- .+..+++..+++.+..++.|...+=+|=
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~lDAPV  121 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEFLDAPV  121 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcEEecCc
Confidence             444444442   2333   3554544 4555677888999999999888776663

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.95  E-value=0.0079  Score=58.91  Aligned_cols=125  Identities=14%  Similarity=0.132  Sum_probs=69.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cC--------c------CCCC-cceecCHHHHHh
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DM--------E------QPLE-IPVMSDLTMVLG   99 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~--------~------~~~g-v~v~~dl~~~l~   99 (300)
                      |||+|+|+ |.||..++..+.+ .++++++ +|.+.  ..+..+. |.        .      ...| +..+++++++++
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~-~G~~V~~-~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLAD-LGHEVTG-VDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHh-cCCeEEE-EECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence            48999997 9999999998874 6788765 66532  1111111 00        0      0123 455678888774


Q ss_pred             cccccCCccEEEEcCC-ch---------hHHHHHHH---HHHcCCCEEEeCC---CCCHHHHHHHHHH-hh---hCCCeE
Q 022250          100 SISQSKARAVVIDFTD-AS---------TVYDNVKQ---ATAFGMRSVVYVP---HIQLETVSALSAF-CD---KASMGC  159 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~-p~---------~~~~~~~~---al~~G~~vVigTT---G~~~e~~~~L~~~-a~---~~~i~i  159 (300)
                            ++|+||.+.+ |.         .+.+.+..   .+..|.-+|..+|   |.+.+-...+.+. ..   ....++
T Consensus        76 ------~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v  149 (411)
T TIGR03026        76 ------DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL  149 (411)
T ss_pred             ------hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence                  7899887654 32         13333332   3344555555554   3443332233222 10   123688


Q ss_pred             EEcCCCcHHHHH
Q 022250          160 LIAPTLSIGSIL  171 (300)
Q Consensus       160 v~a~N~SiGv~l  171 (300)
                      ..+|.|.--.++
T Consensus       150 ~~~Pe~~~~G~~  161 (411)
T TIGR03026       150 AYNPEFLREGNA  161 (411)
T ss_pred             EECCCcCCCCCh
Confidence            999988655443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK08223 hypothetical protein; Validated

Probab=96.94  E-value=0.0074  Score=56.63  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=26.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .-||+|+|| |.+|..+++.+.. .++.=+.++|.
T Consensus        27 ~s~VlIvG~-GGLGs~va~~LA~-aGVG~i~lvD~   59 (287)
T PRK08223         27 NSRVAIAGL-GGVGGIHLLTLAR-LGIGKFTIADF   59 (287)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHH-hCCCeEEEEeC
Confidence            368999999 9999999998874 56655667774

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.94  E-value=0.0058  Score=58.08  Aligned_cols=113  Identities=12%  Similarity=0.129  Sum_probs=68.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .||+|+|+ |+||+++++.+.. .+++++...++..  .....+    .+.|+.++ +.+++++      .+|+|+-..+
T Consensus         4 kkIgiIG~-G~mG~AiA~~L~~-sG~~Viv~~~~~~--~~~~~a----~~~Gv~~~-s~~ea~~------~ADiVvLaVp   68 (314)
T TIGR00465         4 KTVAIIGY-GSQGHAQALNLRD-SGLNVIVGLRKGG--ASWKKA----TEDGFKVG-TVEEAIP------QADLIMNLLP   68 (314)
T ss_pred             CEEEEEeE-cHHHHHHHHHHHH-CCCeEEEEECcCh--hhHHHH----HHCCCEEC-CHHHHHh------cCCEEEEeCC
Confidence            67999998 9999999999875 4677655444322  122211    13455544 4677763      7899998888


Q ss_pred             chhHHHHHH----HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCCcHH
Q 022250          116 ASTVYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG  168 (300)
Q Consensus       116 p~~~~~~~~----~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~SiG  168 (300)
                      |+.....+.    ..++.+ .+|+=..|++-+..   +..-.+ +++++ +.||...-
T Consensus        69 p~~~~~~v~~ei~~~l~~g-~iVs~aaG~~i~~~---~~~~~~-~~~VvrvmPn~p~~  121 (314)
T TIGR00465        69 DEVQHEVYEAEIQPLLKEG-KTLGFSHGFNIHFV---QIVPPK-DVDVVMVAPKGPGT  121 (314)
T ss_pred             cHhHHHHHHHHHHhhCCCC-cEEEEeCCccHhhc---cccCCC-CCcEEEECCCCCcH
Confidence            883433322    223334 36665679986553   322221 24444 78887754

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.93  E-value=0.0017  Score=61.72  Aligned_cols=92  Identities=12%  Similarity=0.098  Sum_probs=64.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -+|+|+|+ |.+|+.++..+....+++-+.+++++.  ..+.+++. +...++  +..++|+++++.      ++|+||-
T Consensus       128 ~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~aDiVi~  198 (325)
T PRK08618        128 KTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTF--EKAYAFAQEIQSKFNTEIYVVNSADEAIE------EADIIVT  198 (325)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence            57999998 999999999887677899999998753  22222221 001223  345789999884      7999997


Q ss_pred             cCCchhHHHHHHHHHHcCCCEE-EeCC
Q 022250          113 FTDASTVYDNVKQATAFGMRSV-VYVP  138 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV-igTT  138 (300)
                      +|+ ..+.-.- .+++.|++|. ||+.
T Consensus       199 aT~-s~~p~i~-~~l~~G~hV~~iGs~  223 (325)
T PRK08618        199 VTN-AKTPVFS-EKLKKGVHINAVGSF  223 (325)
T ss_pred             ccC-CCCcchH-HhcCCCcEEEecCCC
Confidence            664 3344444 7889999986 6653

>COG1810 Uncharacterized protein conserved in archaea [Function unknown]

Probab=96.92  E-value=0.037  Score=49.75  Aligned_cols=159  Identities=12%  Similarity=0.152  Sum_probs=103.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ||||+|+.. |.-|...++.+.... .-+++++.+.+.   ....           ..+..++.|..+   .++|++|-+
T Consensus         1 ~mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~~~~-----------fie~P~~~Lp~~---~e~Di~va~   62 (224)
T COG1810           1 MMKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPE---ELPD-----------FIEEPEDLLPKL---PEADIVVAY   62 (224)
T ss_pred             CcEEEEEee-ccchHHHHHhHhhhccccceEEEEeccc---cccc-----------hhhCHHHhcCCC---CCCCEEEEe
Confidence            699999996 999999999988532 256777777531   1111           124556666531   478999988


Q ss_pred             C-CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcH----HHHHHHHHHHHhccCCCCeEE
Q 022250          114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI----GSILLQQAAISASFHYKNVEI  188 (300)
Q Consensus       114 T-~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~Si----Gv~ll~~~a~~~~~~~~dieI  188 (300)
                      + +|+-..+..+.+.+.|+..||--..-..-..++|++.+.+.|+-+..--+|--    +--.+.+++..+.+....+|+
T Consensus        63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~vevev  142 (224)
T COG1810          63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPNENPHIDEFAERFGKPEVEVEV  142 (224)
T ss_pred             ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCCCCChHHHHHHHHcCCceEEEEe
Confidence            6 89999999999988887666532222223456788888876665444333320    122567788877654333333


Q ss_pred             EEcc----CCCCCCCchHHHHHHHHHH
Q 022250          189 VESR----PNARDFPSPDATQIANNLS  211 (300)
Q Consensus       189 iE~H----h~K~DaPSGTA~~l~~~i~  211 (300)
                      -+--    +-++.||=|.+.-+|+.+.
T Consensus       143 ~~~~i~~V~V~RsaPCGsT~~vAk~l~  169 (224)
T COG1810         143 ENGKIKDVDVLRSAPCGSTWYVAKRLV  169 (224)
T ss_pred             cCCeEEEEEEEecCCCchHHHHHHHhc
Confidence            2211    2378999999999999874

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.91  E-value=0.014  Score=58.73  Aligned_cols=117  Identities=10%  Similarity=0.091  Sum_probs=68.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC---cceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      +.+|+++|. |.||+.+++.+.+ .+++|+ ++|++.  ..+..+.......|   +..+++++++.+++   ..+|+||
T Consensus         6 ~~~IG~IGL-G~MG~~mA~nL~~-~G~~V~-V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dvIi   77 (493)
T PLN02350          6 LSRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRSVI   77 (493)
T ss_pred             CCCEEEEee-HHHHHHHHHHHHh-CCCeEE-EECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCEEE
Confidence            578999997 9999999999985 588776 678653  22223321000112   22567888887521   2489888


Q ss_pred             EcC-CchhHHHHH---HHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250          112 DFT-DASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       112 DfT-~p~~~~~~~---~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      -+= .++++.+.+   ...++.|.=+|-++|. ++++..++.+.+++.|+..+
T Consensus        78 ~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~-~~~~t~~~~~~l~~~Gi~fl  129 (493)
T PLN02350         78 ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNE-WYENTERRIKEAAEKGLLYL  129 (493)
T ss_pred             EECCCcHHHHHHHHHHHhhcCCCCEEEECCCC-CHHHHHHHHHHHHHcCCeEE
Confidence            543 344444443   3344556444444443 34455666666666666533

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.87  E-value=0.0083  Score=51.12  Aligned_cols=82  Identities=23%  Similarity=0.336  Sum_probs=52.1

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce----ecC---HHHHHhcccccCCccEE
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARAVV  110 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~DVV  110 (300)
                      |.|.|+||.+|+.+++.+.+. +.++.+++.++.   ...+      ..++.+    +.|   +.+++      .++|+|
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~---~~~~------~~~~~~~~~d~~d~~~~~~al------~~~d~v   64 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS---KAED------SPGVEIIQGDLFDPDSVKAAL------KGADAV   64 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG---GHHH------CTTEEEEESCTTCHHHHHHHH------TTSSEE
T ss_pred             eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch---hccc------ccccccceeeehhhhhhhhhh------hhcchh
Confidence            789999999999999999865 599999876432   1111      112211    123   44555      479999


Q ss_pred             EEcCC-----chhHHHHHHHHHHcCCCEEE
Q 022250          111 IDFTD-----ASTVYDNVKQATAFGMRSVV  135 (300)
Q Consensus       111 IDfT~-----p~~~~~~~~~al~~G~~vVi  135 (300)
                      |++..     .+.....+..+.++|++-++
T Consensus        65 i~~~~~~~~~~~~~~~~~~a~~~~~~~~~v   94 (183)
T PF13460_consen   65 IHAAGPPPKDVDAAKNIIEAAKKAGVKRVV   94 (183)
T ss_dssp             EECCHSTTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred             hhhhhhhcccccccccccccccccccccce
Confidence            98764     23345555666677775443

...

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.86  E-value=0.014  Score=54.64  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=64.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-------cCHHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-------SDLTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-------~dl~~~l~~~~~~~~~D  108 (300)
                      |||.|.|+||.+|+.+++.+.+ .++++.++.....   ....+.    ..++.+.       +++.+++      .++|
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~-~g~~V~~l~R~~~---~~~~l~----~~~v~~v~~Dl~d~~~l~~al------~g~d   66 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALD-EGYQVRCLVRNLR---KASFLK----EWGAELVYGDLSLPETLPPSF------KGVT   66 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEcChH---HhhhHh----hcCCEEEECCCCCHHHHHHHH------CCCC
Confidence            4899999999999999999885 5789887764321   111110    1223221       2345555      4789


Q ss_pred             EEEEcCCch-------------hHHHHHHHHHHcCCC-EE-EeCCC-----CCH--HHHHHHHHHhhhCCCeEE
Q 022250          109 VVIDFTDAS-------------TVYDNVKQATAFGMR-SV-VYVPH-----IQL--ETVSALSAFCDKASMGCL  160 (300)
Q Consensus       109 VVIDfT~p~-------------~~~~~~~~al~~G~~-vV-igTTG-----~~~--e~~~~L~~~a~~~~i~iv  160 (300)
                      +||.+....             .....++.|.++|+. +| +++.+     .++  +...+.+++.++.++++.
T Consensus        67 ~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~t  140 (317)
T CHL00194         67 AIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYT  140 (317)
T ss_pred             EEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeE
Confidence            999875321             124456777788864 44 23322     111  123345566666676654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.83  E-value=0.007  Score=56.80  Aligned_cols=101  Identities=16%  Similarity=0.166  Sum_probs=55.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh----hhcCcCCC--------CcceecCHHHHHhcc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM----VCDMEQPL--------EIPVMSDLTMVLGSI  101 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~----~~g~~~~~--------gv~v~~dl~~~l~~~  101 (300)
                      +.||+|+|+ |.||..++..+.. .+++++. +|.+... ..+..    ..+...+.        .+...+|+++++   
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~-~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFAR-KGLQVVL-IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV---   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh---
Confidence            468999998 9999999998874 5777765 6643200 00000    00100000        123456787776   


Q ss_pred             cccCCccEEEEcCCchh--HHHHHHH---HHHcCCCEEEeCCCCCHHH
Q 022250          102 SQSKARAVVIDFTDAST--VYDNVKQ---ATAFGMRSVVYVPHIQLET  144 (300)
Q Consensus       102 ~~~~~~DVVIDfT~p~~--~~~~~~~---al~~G~~vVigTTG~~~e~  144 (300)
                         .++|+||.+.+++.  ..+.+..   .+..+.-+++-|.|++.++
T Consensus        78 ---~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~  122 (311)
T PRK06130         78 ---SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITA  122 (311)
T ss_pred             ---ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence               37899998887653  2233322   2222332334455776443

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.81  E-value=0.015  Score=53.70  Aligned_cols=78  Identities=12%  Similarity=0.092  Sum_probs=49.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |||+|+|+ |.||+.++..+.+..- .++. ++|++.  ......    ...|+. ...+.+++.       ++|+||-+
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~-~~d~~~--~~~~~~----~~~g~~~~~~~~~~~~-------~aD~Vila   65 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVY-GYDHNE--LHLKKA----LELGLVDEIVSFEELK-------KCDVIFLA   65 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEE-EEcCCH--HHHHHH----HHCCCCcccCCHHHHh-------cCCEEEEe
Confidence            48999997 9999999999875421 3544 466542  111111    123332 234666653       48999999


Q ss_pred             CCchhHHHHHHHHHH
Q 022250          114 TDASTVYDNVKQATA  128 (300)
Q Consensus       114 T~p~~~~~~~~~al~  128 (300)
                      ++|+...+.+.....
T Consensus        66 vp~~~~~~~~~~l~~   80 (275)
T PRK08507         66 IPVDAIIEILPKLLD   80 (275)
T ss_pred             CcHHHHHHHHHHHhc
Confidence            998888887766543

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.80  E-value=0.02  Score=55.64  Aligned_cols=70  Identities=20%  Similarity=0.109  Sum_probs=48.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..||+|+|.+|.||+.+++.+.+..+.++.| +|+...                 ...++++++      .++|+||-++
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~~d~-----------------~~~~~~~~v------~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDPADP-----------------GSLDPATLL------QRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcCCcc-----------------ccCCHHHHh------cCCCEEEEeC
Confidence            4689999988999999999998655788775 665310                 012344555      3677777777


Q ss_pred             CchhHHHHHHHHHH
Q 022250          115 DASTVYDNVKQATA  128 (300)
Q Consensus       115 ~p~~~~~~~~~al~  128 (300)
                      ++....+.+.....
T Consensus        60 Pv~~~~~~l~~l~~   73 (370)
T PRK08818         60 PIRHTAALIEEYVA   73 (370)
T ss_pred             CHHHHHHHHHHHhh
Confidence            77777777766554

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.75  E-value=0.0089  Score=56.06  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      -+|+|+|+ |+||+.+++.+... ++++. +++++.  .......    ..+...  ++++++++      .++|+||..
T Consensus       152 k~v~IiG~-G~iG~avA~~L~~~-G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l------~~aDiVint  216 (287)
T TIGR02853       152 SNVMVLGF-GRTGMTIARTFSAL-GARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKV------AEIDIVINT  216 (287)
T ss_pred             CEEEEEcC-hHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHh------ccCCEEEEC
Confidence            68999998 99999999998754 67765 566542  1111111    122221  34667777      478999976


Q ss_pred             CCchhH-HHHHHHHHHcCCCEE-EeC-CCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          114 TDASTV-YDNVKQATAFGMRSV-VYV-PHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       114 T~p~~~-~~~~~~al~~G~~vV-igT-TG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      + |... .+.....++.+.-++ +++ +|-++     + ++|++.|+..+++||.-
T Consensus       217 ~-P~~ii~~~~l~~~k~~aliIDlas~Pg~td-----f-~~Ak~~G~~a~~~~glP  265 (287)
T TIGR02853       217 I-PALVLTADVLSKLPKHAVIIDLASKPGGTD-----F-EYAKKRGIKALLAPGLP  265 (287)
T ss_pred             C-ChHHhCHHHHhcCCCCeEEEEeCcCCCCCC-----H-HHHHHCCCEEEEeCCCC
Confidence            5 4333 222222333333222 222 35554     3 57889999999988654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02858 fructose-bisphosphate aldolase

Probab=96.74  E-value=0.019  Score=64.45  Aligned_cols=120  Identities=14%  Similarity=0.052  Sum_probs=77.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ++.||+++|. |.||..+++.+.. .++++. ++|++.  .....+.    ..|....++..++.+      ++|+||-+
T Consensus       323 ~~~~IGfIGl-G~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~  387 (1378)
T PLN02858        323 PVKRIGFIGL-GAMGFGMASHLLK-SNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIM  387 (1378)
T ss_pred             CCCeEEEECc-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEe
Confidence            3578999997 9999999999874 578765 567543  2222332    234555678888874      78999865


Q ss_pred             CC-chhHHHHHH------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhh--CCCeEEEcCCCcHHHH
Q 022250          114 TD-ASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCLIAPTLSIGSI  170 (300)
Q Consensus       114 T~-p~~~~~~~~------~al~~G~~vVigTTG~~~e~~~~L~~~a~~--~~i~iv~a~N~SiGv~  170 (300)
                      -+ |+.+.+.+.      ..+..|. +||-++..+++..+++.+.+++  .++..+-+| .|=|..
T Consensus       388 V~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP-VsGg~~  451 (1378)
T PLN02858        388 VANEVQAENVLFGDLGAVSALPAGA-SIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP-VSGGVK  451 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc-CCCChh
Confidence            54 555555541      1223444 5555555556777788887777  777777766 444443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.73  E-value=0.005  Score=54.04  Aligned_cols=123  Identities=13%  Similarity=0.157  Sum_probs=63.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhhcCc-CCCCcceecCHHHHHhcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVCDME-QPLEIPVMSDLTMVLGSI  101 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------~g------~d~~~~~g~~-~~~gv~v~~dl~~~l~~~  101 (300)
                      |||+|+|. |.+|-.++..++ ..+++++| +|.+.       .|      ....+++... .......++|.++++.  
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA-~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~--   75 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALA-EKGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK--   75 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHH-HTTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred             CEEEEECC-CcchHHHHHHHH-hCCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence            79999997 999999998777 56899887 55321       01      0111111000 1123456678888764  


Q ss_pred             cccCCccEEEEcCC-c------------hhHHHHHHHHHHcCCCEEEeCC---CCCHHHHHHHHHHhhh--CCCeEEEcC
Q 022250          102 SQSKARAVVIDFTD-A------------STVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDK--ASMGCLIAP  163 (300)
Q Consensus       102 ~~~~~~DVVIDfT~-p------------~~~~~~~~~al~~G~~vVigTT---G~~~e~~~~L~~~a~~--~~i~iv~a~  163 (300)
                          ++|+++.+-+ |            +.+.+.+...++.+.-+|+.+|   |.+++....+.+....  .+..+.++|
T Consensus        76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P  151 (185)
T PF03721_consen   76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP  151 (185)
T ss_dssp             ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred             ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence                6888776532 2            2334445555666777888877   7777554444433222  235677777


Q ss_pred             CCcH
Q 022250          164 TLSI  167 (300)
Q Consensus       164 N~Si  167 (300)
                      =|=.
T Consensus       152 Erl~  155 (185)
T PF03721_consen  152 ERLR  155 (185)
T ss_dssp             ----
T ss_pred             CccC
Confidence            6543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function

Probab=96.69  E-value=0.035  Score=50.06  Aligned_cols=149  Identities=14%  Similarity=0.119  Sum_probs=100.3

Q ss_pred             CchHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC-CchhHHH
Q 022250           44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD  121 (300)
Q Consensus        44 ~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~  121 (300)
                      .|+-|..+.+.+.+.++++ .+..++.+.   +..++           .++.++.|.+   -.++|++|.++ +|+.+.+
T Consensus         5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~ef-----------Id~pee~Lp~---i~~~Dl~I~y~lHPDl~~~   67 (217)
T PF02593_consen    5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPEF-----------IDDPEEYLPK---IPEADLLIAYGLHPDLTYE   67 (217)
T ss_pred             eCcchHHHHHHHHhcCCCCceEEEEeCCc---ccccc-----------ccChHHHccC---CCCCCEEEEeccCchhHHH
Confidence            4888999999998888876 344555431   22222           2344555543   25789999977 8999999


Q ss_pred             HHHHHHHcCCCEEEeCCCCCH--HHHHHHHHHhhhCCCeEEEcCCCc----HHHHHHHHHHHHhccCCCCeEE-EEccC-
Q 022250          122 NVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLS----IGSILLQQAAISASFHYKNVEI-VESRP-  193 (300)
Q Consensus       122 ~~~~al~~G~~vVigTTG~~~--e~~~~L~~~a~~~~i~iv~a~N~S----iGv~ll~~~a~~~~~~~~dieI-iE~Hh-  193 (300)
                      ..+.|.++|+..||.-. |+.  ...++|++.+++.|+-+..--.|-    -|--.+.++++.+.+.  -+|| ++--. 
T Consensus        68 l~~~~~e~g~kavIvp~-~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGkP--~~ei~v~~~~I  144 (217)
T PF02593_consen   68 LPEIAKEAGVKAVIVPS-ESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGKP--KVEIEVENGKI  144 (217)
T ss_pred             HHHHHHHcCCCEEEEec-CCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCCc--eEEEEecCCcE
Confidence            99999999998887533 322  345568888888887666544442    1233567888887653  4444 23221 


Q ss_pred             ---C-CCCCCchHHHHHHHHHHh
Q 022250          194 ---N-ARDFPSPDATQIANNLSN  212 (300)
Q Consensus       194 ---~-K~DaPSGTA~~l~~~i~~  212 (300)
                         + +++||=|++..+|+.+.-
T Consensus       145 ~~V~VlR~aPCGsT~~vAk~l~G  167 (217)
T PF02593_consen  145 KDVKVLRSAPCGSTWFVAKRLIG  167 (217)
T ss_pred             EEEEEEecCCCccHHHHHHHhcC
Confidence               3 689999999999998743

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.69  E-value=0.02  Score=47.56  Aligned_cols=121  Identities=16%  Similarity=0.178  Sum_probs=59.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ||.|+|+ |++|..+++.+.. .++.=+.++|.+.. -.+.... ..-....|-+-.+.+.+.+.+    ..+++-|..-
T Consensus         1 ~VliiG~-GglGs~ia~~L~~-~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~----~~p~v~i~~~   74 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLAR-SGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNE----LNPGVNVTAV   74 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-CCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHH----HCCCcEEEEE
Confidence            6899998 9999999999874 56655556775321 0111110 000011121111222222221    2344433322


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      ......+.. ...-.+..+|+.++.- .+....|.++|++.++|++.+.+.
T Consensus        75 ~~~~~~~~~-~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~  123 (143)
T cd01483          75 PEGISEDNL-DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGL  123 (143)
T ss_pred             eeecChhhH-HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCC
Confidence            111111111 1222456677766654 334566777777777777765553

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.66  E-value=0.012  Score=54.65  Aligned_cols=100  Identities=17%  Similarity=0.126  Sum_probs=55.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcch---------hhhh--cCcC-------CCCcceecCHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI---------GMVC--DMEQ-------PLEIPVMSDLTM   96 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~---------~~~~--g~~~-------~~gv~v~~dl~~   96 (300)
                      +.||+|+|+ |.||..++..+... +++++. +|.+..-.+.         ..+.  |...       ...+.+++|+++
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~-g~~V~~-~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~   79 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVVM-VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD   79 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            358999998 99999999988754 777765 5643210000         0111  0000       013445667765


Q ss_pred             HHhcccccCCccEEEEcCCchhH--HHHHHH---HHHcCCCEEEeCCCCCHHH
Q 022250           97 VLGSISQSKARAVVIDFTDASTV--YDNVKQ---ATAFGMRSVVYVPHIQLET  144 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~--~~~~~~---al~~G~~vVigTTG~~~e~  144 (300)
                       +      .++|+||.+.+++..  .+.+..   ++..+..+++-|.+++..+
T Consensus        80 -~------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~  125 (282)
T PRK05808         80 -L------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE  125 (282)
T ss_pred             -h------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence             3      478999988765332  233333   3333444444455776654

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.57  E-value=0.015  Score=57.77  Aligned_cols=119  Identities=17%  Similarity=0.226  Sum_probs=77.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCcCCC--Ccce--------ecCHHHHHh
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL--EIPV--------MSDLTMVLG   99 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~--gv~v--------~~dl~~~l~   99 (300)
                      ..||+|.|+ |++|+..++.+.+ .+.+||++.|+     ++.|-|..++.......  .+.-        +.+.++++.
T Consensus       232 g~rVaIqGf-GnVG~~~A~~L~~-~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~  309 (445)
T PRK09414        232 GKRVVVSGS-GNVAIYAIEKAQQ-LGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWS  309 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccc
Confidence            489999998 9999999998874 68999999884     34466655433111000  0111        123455554


Q ss_pred             cccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          100 SISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                           .++||+|-++..... .+++.....++..+|+|-- + .+++..+.|    +++  .+++.|-+.
T Consensus       310 -----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L----~~r--GI~~vPD~l  368 (445)
T PRK09414        310 -----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF----LEA--GVLFAPGKA  368 (445)
T ss_pred             -----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH----HHC--CcEEECchh
Confidence                 689999999876555 6777777778999999976 3 455433223    343  456667654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.56  E-value=0.021  Score=53.35  Aligned_cols=99  Identities=12%  Similarity=0.163  Sum_probs=55.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcch---------hhhhcCcC---------CCCcceecCHHHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI---------GMVCDMEQ---------PLEIPVMSDLTMV   97 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~---------~~~~g~~~---------~~gv~v~~dl~~~   97 (300)
                      -||+|+|+ |.||..++..++. .+++++ ++|.+....+.         ..+...+.         ...+...+|+++ 
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-   81 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCAR-AGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-   81 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHHh-CCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence            48999998 9999999998774 588866 46643210000         00110000         011235677754 


Q ss_pred             HhcccccCCccEEEEcCCchhH-----HHHHHHHH-HcCCCEEEeCCCCCHHH
Q 022250           98 LGSISQSKARAVVIDFTDASTV-----YDNVKQAT-AFGMRSVVYVPHIQLET  144 (300)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al-~~G~~vVigTTG~~~e~  144 (300)
                      +      .++|+||+.-+-+.-     +..+..++ ..+..++.-|+++...+
T Consensus        82 ~------~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~  128 (286)
T PRK07819         82 F------ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK  128 (286)
T ss_pred             h------CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence            4      478999987643222     22333333 44555555566776654

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.55  E-value=0.013  Score=52.72  Aligned_cols=117  Identities=13%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCc-CCCCccee-----cCHHHHHhcccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSISQ  103 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~-~~~gv~v~-----~dl~~~l~~~~~  103 (300)
                      .+||+|.|+ |++|+.+++.+.+ .+..+|++.|.+     + |-|..++.... ...++..+     .+-++++.    
T Consensus        23 g~~vaIqGf-GnVG~~~a~~L~~-~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----   95 (217)
T cd05211          23 GLTVAVQGL-GNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG----   95 (217)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-cCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee----
Confidence            589999998 9999999998875 589999999953     3 55543332100 01122221     13355654    


Q ss_pred             cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                       .++||+|.++.....  +...+.+.+.++|+|.-  .++++..+.|    +++|  +++.|-+-.
T Consensus        96 -~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L----~~~G--i~v~Pd~~~  152 (217)
T cd05211          96 -LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRIL----HERG--IVVAPDIVA  152 (217)
T ss_pred             -ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHHH----HHCC--cEEEChHHh
Confidence             589999998866543  22445567899999876  3555432223    4444  677787655

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PLN02858 fructose-bisphosphate aldolase

Probab=96.55  E-value=0.03  Score=62.95  Aligned_cols=115  Identities=13%  Similarity=0.015  Sum_probs=75.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      +..||+++|. |.||..+++.+.+ .++++. ++|++.  .....+.    ..|..+.+++.++.+      .+|+||-+
T Consensus         3 ~~~~IGfIGL-G~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi~~   67 (1378)
T PLN02858          3 SAGVVGFVGL-DSLSFELASSLLR-SGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALVVV   67 (1378)
T ss_pred             CCCeEEEEch-hHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEE
Confidence            3478999997 9999999999885 578875 678653  2223333    346677889999874      78988865


Q ss_pred             C-CchhHHHHH---HHHHHcC--CCEEEeCCCCCHHHHHHHHHHhhhCC--CeEEEcC
Q 022250          114 T-DASTVYDNV---KQATAFG--MRSVVYVPHIQLETVSALSAFCDKAS--MGCLIAP  163 (300)
Q Consensus       114 T-~p~~~~~~~---~~al~~G--~~vVigTTG~~~e~~~~L~~~a~~~~--i~iv~a~  163 (300)
                      - .++.+.+.+   .-.++.-  -.+|+-++..+++...++.+.+++.|  +..+=+|
T Consensus        68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaP  125 (1378)
T PLN02858         68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAY  125 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence            4 344445443   1233321  13666666666777788888877777  5544433

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=96.51  E-value=0.024  Score=53.32  Aligned_cols=129  Identities=19%  Similarity=0.185  Sum_probs=85.8

Q ss_pred             eEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhccccc
Q 022250           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS  104 (300)
Q Consensus        25 ~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~  104 (300)
                      .+|+-.+++ +.||+-+|- |.||+.++..+.+ .++.++ ++|+..  ....+|    .+.|..+.+++.|+.+     
T Consensus        26 ~~s~~~~~s-~~~iGFIGL-G~MG~~M~~nLik-~G~kVt-V~dr~~--~k~~~f----~~~Ga~v~~sPaeVae-----   90 (327)
T KOG0409|consen   26 AMSSRITPS-KTRIGFIGL-GNMGSAMVSNLIK-AGYKVT-VYDRTK--DKCKEF----QEAGARVANSPAEVAE-----   90 (327)
T ss_pred             cccccCCcc-cceeeEEee-ccchHHHHHHHHH-cCCEEE-EEeCcH--HHHHHH----HHhchhhhCCHHHHHh-----
Confidence            456655554 689999996 9999999999885 578766 577653  122233    2457888899999984     


Q ss_pred             CCccEEEEc-CCchhHHHHHH------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          105 KARAVVIDF-TDASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       105 ~~~DVVIDf-T~p~~~~~~~~------~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                       .+||+|-. +.|..+.+.+.      ..+.-|.+.+|-.+..+++-..+|.+.++..+...+ =+--|=|+.
T Consensus        91 -~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~v-DAPVSGg~~  161 (327)
T KOG0409|consen   91 -DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFV-DAPVSGGVK  161 (327)
T ss_pred             -hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEE-eccccCCch
Confidence             78988764 45555555543      122355555455566777777888888887765544 344455543

>PRK06091 membrane protein FdrA; Validated

Probab=96.49  E-value=0.013  Score=59.39  Aligned_cols=75  Identities=8%  Similarity=0.087  Sum_probs=64.4

Q ss_pred             CcceecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250           87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus        87 gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      .++.+.++.++++.   ..++|+++.+.+++.+.+.++.|++.|+++||-+.||..+..++|.++|+++|+. ++.||=
T Consensus       101 ~~~~~~t~~~a~~~---lpe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~Glr-vmGPNC  175 (555)
T PRK06091        101 SLTQVRRWDSACQK---LPDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLL-VMGPDC  175 (555)
T ss_pred             CCcccccHHHHHhc---CCCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCE-EECCCC
Confidence            45667788887753   2457999989999999999999999999999988899887788999999999975 789998

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=96.49  E-value=0.016  Score=48.40  Aligned_cols=102  Identities=16%  Similarity=0.162  Sum_probs=74.5

Q ss_pred             ceEEEEcCCchH---HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEI---GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrM---G~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .+|+|+|+|-+=   +-.+.+.+. +.|++++.+ ++...|   .++      +|-++|.|+.++-      .+.|+|.-
T Consensus        17 K~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViPV-NP~~~~---~ei------LG~k~y~sL~dIp------e~IDiVdv   79 (140)
T COG1832          17 KTIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIPV-NPKLAG---EEI------LGEKVYPSLADIP------EPIDIVDV   79 (140)
T ss_pred             ceEEEEecCCCCCccHHHHHHHHH-HCCCEEEee-Ccccch---HHh------cCchhhhcHHhCC------CCCcEEEE
Confidence            579999998654   445666655 578999873 333222   333      4668899999885      58999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCC
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i  157 (300)
                      |-.|+.+.+.++.+++.+..+|=.-.|...++.   .+.+++.|.
T Consensus        80 FR~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea---~~~~~~aG~  121 (140)
T COG1832          80 FRRSEAAPEVAREALEKGAKVVWLQLGIRNEEA---AEKARDAGL  121 (140)
T ss_pred             ecChhhhHHHHHHHHhhCCCeEEEecCcCCHHH---HHHHHHhCc
Confidence            999999999999999999999987778654443   334555444

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.46  E-value=0.043  Score=50.59  Aligned_cols=149  Identities=17%  Similarity=0.217  Sum_probs=89.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC--------CcEEEEEEecCC--CCcch------hhhhc-CcCCCCcceecCHHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS--VGEDI------GMVCD-MEQPLEIPVMSDLTMV   97 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~--~g~d~------~~~~g-~~~~~gv~v~~dl~~~   97 (300)
                      +++|+++|| |.+|+.+.+.+..-.        .+.+|++.|...  ..+|.      .+|.. +-...+-  .-+++++
T Consensus         3 ~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~--alsLdaL   79 (364)
T KOG0455|consen    3 KVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGS--ALSLDAL   79 (364)
T ss_pred             cccEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCC--cccHHHH
Confidence            478999998 999999998876432        257888887421  11221      11110 0011111  1247788


Q ss_pred             HhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCC--HHHHHHHHHHhhhCCCeEEEcCCCcHHHHH--H
Q 022250           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQ--LETVSALSAFCDKASMGCLIAPTLSIGSIL--L  172 (300)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~--~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l--l  172 (300)
                      ++.++....+-++||.|......+....+++.|+.++.-.- .|+  .+..+.|....+   .|-++----++|+-|  +
T Consensus        80 ia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~---s~~fi~HEatVGAGLPiI  156 (364)
T KOG0455|consen   80 IAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSK---SPRFIRHEATVGAGLPII  156 (364)
T ss_pred             HHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCC---CCceEEeeccccCCchhH
Confidence            77666667788999999999999999999999999885432 454  345555544433   344444445555543  3


Q ss_pred             HHHHHHhccCCCCeEEEE
Q 022250          173 QQAAISASFHYKNVEIVE  190 (300)
Q Consensus       173 ~~~a~~~~~~~~dieIiE  190 (300)
                      .-+-+.++ ....++-||
T Consensus       157 s~L~eiI~-tGDev~kIe  173 (364)
T KOG0455|consen  157 SSLNEIIS-TGDEVHKIE  173 (364)
T ss_pred             HHHHHHHh-cCCceeEEE
Confidence            33333333 344455444

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.43  E-value=0.023  Score=54.37  Aligned_cols=93  Identities=13%  Similarity=0.149  Sum_probs=59.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|+|+|+ |.||+.+++.+.. .+++++....+..  +. ...+   ...|+.+. |.+++++      .+|+|+...+
T Consensus        18 ktIgIIG~-GsmG~AlA~~L~~-sG~~Vvv~~r~~~--~s-~~~A---~~~G~~~~-s~~eaa~------~ADVVvLaVP   82 (330)
T PRK05479         18 KKVAIIGY-GSQGHAHALNLRD-SGVDVVVGLREGS--KS-WKKA---EADGFEVL-TVAEAAK------WADVIMILLP   82 (330)
T ss_pred             CEEEEEee-HHHHHHHHHHHHH-CCCEEEEEECCch--hh-HHHH---HHCCCeeC-CHHHHHh------cCCEEEEcCC
Confidence            68999998 9999999999874 5788775544321  11 1111   12355444 7888874      7899998888


Q ss_pred             chhHHHHH-HHHHH---cCCCEEEeCCCCCHHH
Q 022250          116 ASTVYDNV-KQATA---FGMRSVVYVPHIQLET  144 (300)
Q Consensus       116 p~~~~~~~-~~al~---~G~~vVigTTG~~~e~  144 (300)
                      ++...+.+ ...+.   .|. +|+=..|++-..
T Consensus        83 d~~~~~V~~~~I~~~Lk~g~-iL~~a~G~~i~~  114 (330)
T PRK05479         83 DEVQAEVYEEEIEPNLKEGA-ALAFAHGFNIHF  114 (330)
T ss_pred             HHHHHHHHHHHHHhcCCCCC-EEEECCCCChhh
Confidence            77776555 32332   233 445556887643

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.42  E-value=0.019  Score=52.44  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=26.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||.|+|+ |.+|..+++.+.. .++.=+.++|.
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~-~Gvg~i~lvD~   56 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAA-AGVGNLTLLDF   56 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeC
Confidence            468999998 9999999999875 46655666775

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=96.41  E-value=0.0044  Score=59.76  Aligned_cols=35  Identities=34%  Similarity=0.483  Sum_probs=30.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc----CCcEEEEEEec
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS   69 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~   69 (300)
                      |++||+|+|+ ||+||.+.+++.+.    +++|+|++-|+
T Consensus         2 m~ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~   40 (361)
T PTZ00434          2 APIKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDM   40 (361)
T ss_pred             CceEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence            5689999998 99999999998764    68999999873

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.41  E-value=0.012  Score=55.66  Aligned_cols=80  Identities=24%  Similarity=0.270  Sum_probs=49.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||+|+|+ |.||+.+++.+.. .+..-+.+++++.  ..+.+++   ..+|..+  ++++.+.+      .++|+||.
T Consensus       178 ~~~V~ViGa-G~iG~~~a~~L~~-~g~~~V~v~~r~~--~ra~~la---~~~g~~~~~~~~~~~~l------~~aDvVi~  244 (311)
T cd05213         178 GKKVLVIGA-GEMGELAAKHLAA-KGVAEITIANRTY--ERAEELA---KELGGNAVPLDELLELL------NEADVVIS  244 (311)
T ss_pred             CCEEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHH---HHcCCeEEeHHHHHHHH------hcCCEEEE
Confidence            478999998 9999999998875 4555566677653  2222333   2233222  24566666      36899998


Q ss_pred             cCCchhHHHHHHHHH
Q 022250          113 FTDASTVYDNVKQAT  127 (300)
Q Consensus       113 fT~p~~~~~~~~~al  127 (300)
                      +|......+....++
T Consensus       245 at~~~~~~~~~~~~~  259 (311)
T cd05213         245 ATGAPHYAKIVERAM  259 (311)
T ss_pred             CCCCCchHHHHHHHH
Confidence            886555444444443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=96.40  E-value=0.0097  Score=56.90  Aligned_cols=97  Identities=24%  Similarity=0.222  Sum_probs=60.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh--hc-----CcCCCCccee--c
Q 022250           37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV--CD-----MEQPLEIPVM--S   92 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~~~~--~g-----~~~~~gv~v~--~   92 (300)
                      ||+|+|+ ||+||.+.+++.+.  +++++|++-|..             ..|+--+++  .+     ...+..+.++  .
T Consensus         1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~   79 (327)
T TIGR01534         1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER   79 (327)
T ss_pred             CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence            7999998 99999999998776  589999987731             011100000  00     0000012222  1


Q ss_pred             CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      +++++-=   .+.++|+|+++|-.....+.+..+++.|...|+=+
T Consensus        80 dp~~~~w---~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS  121 (327)
T TIGR01534        80 DPSDLPW---KALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS  121 (327)
T ss_pred             CcccCch---hhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence            3333210   01378999999988888889999999997766544

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=96.39  E-value=0.025  Score=53.77  Aligned_cols=32  Identities=19%  Similarity=0.153  Sum_probs=27.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      ++||.|.|++|-+|+.+++.+.+. +.+++++.
T Consensus        15 ~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d   46 (348)
T PRK15181         15 PKRWLITGVAGFIGSGLLEELLFL-NQTVIGLD   46 (348)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence            579999999999999999999864 68887653

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.0097  Score=56.36  Aligned_cols=104  Identities=14%  Similarity=0.198  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC------CchhHHH
Q 022250           48 GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYD  121 (300)
Q Consensus        48 G~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~  121 (300)
                      |+...-.+.-.+.+++++++|....+.+....++. ...++|+.++.+++++     ...|++|.-.      .|+...+
T Consensus        15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~-~~~~vpii~s~~~~~e-----~~~e~liIgia~~gG~~~~~~~~   88 (339)
T COG3367          15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGG-DKADVPIISSVEEALE-----GLAEALIIGIAPPGGVLPESWRE   88 (339)
T ss_pred             chhhhhhhcccccceeeeEEeeeccccccHHHhCC-ccCCCcccccHHHHHh-----cCcceEEEEeecCCCcCcHHHHH
Confidence            44444444434459999999987766444444433 3679999999999996     3448777654      3566678


Q ss_pred             HHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCe
Q 022250          122 NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (300)
Q Consensus       122 ~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~  158 (300)
                      .+..|+++|++||.|---+ -++..++.++|++.|+.
T Consensus        89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~r  124 (339)
T COG3367          89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGVR  124 (339)
T ss_pred             HHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCCe
Confidence            9999999999999775544 45667899999998874

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.37  E-value=0.062  Score=53.86  Aligned_cols=123  Identities=11%  Similarity=0.068  Sum_probs=69.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-cCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      +|+++|. |.||+.+++.+.+ .+++++ ++|++.  .....+... ....++..+++++++.++   ..++|+||-+-+
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~-~G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~---l~~~dvIil~v~   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMAD-HGFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQS---LERPRKIMLMVK   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHh-cCCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhh---cCCCCEEEEECC
Confidence            4899997 9999999999985 477765 577643  222223210 000124556778777642   136898886665


Q ss_pred             c-hhHHHHHHH---HHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          116 A-STVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       116 p-~~~~~~~~~---al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      + +.+.+.+..   +++.|.-+|-++|....+..+...+ .++.++. ++..-.|=|.
T Consensus        73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi~-fvdapVsGG~  128 (467)
T TIGR00873        73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGIL-FVGSGVSGGE  128 (467)
T ss_pred             CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCCE-EEcCCCCCCH
Confidence            5 444444433   3455655665666554444444444 4455665 4444444443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=96.36  E-value=0.0087  Score=56.48  Aligned_cols=87  Identities=21%  Similarity=0.183  Sum_probs=61.6

Q ss_pred             EecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC------CchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250           67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus        67 vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      +|++..|++++++++.  ..++|++++++++ .     ..+|++|.-.      .|+.-.+.+..|+++|++||.|---+
T Consensus         1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~   72 (301)
T PF07755_consen    1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF   72 (301)
T ss_dssp             E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred             CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh
Confidence            5777889999999985  3899999999999 3     5899888633      36777899999999999999986542


Q ss_pred             CHHHHHHHHHHhhhCCCeEEEc
Q 022250          141 QLETVSALSAFCDKASMGCLIA  162 (300)
Q Consensus       141 ~~e~~~~L~~~a~~~~i~iv~a  162 (300)
                       ..+..+|.++|+++|+.++--
T Consensus        73 -L~ddpel~~~A~~~g~~i~Dv   93 (301)
T PF07755_consen   73 -LSDDPELAAAAKKNGVRIIDV   93 (301)
T ss_dssp             -HCCHHHHHCCHHCCT--EEET
T ss_pred             -hccCHHHHHHHHHcCCeEeec
Confidence             234567899999999887743

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.33  E-value=0.032  Score=49.89  Aligned_cols=95  Identities=16%  Similarity=0.106  Sum_probs=54.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc----CcCCCCc--ce-ecCHHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----MEQPLEI--PV-MSDLTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g----~~~~~gv--~v-~~dl~~~l~~~~~~~~~D  108 (300)
                      |||+|+|++|.||+.++..+.+ .+.+++. ++++.  +.+..+..    .....++  .+ ..+..+++      ..+|
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~-~G~~V~v-~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~------~~aD   70 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAK-AGNKIII-GSRDL--EKAEEAAAKALEELGHGGSDIKVTGADNAEAA------KRAD   70 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh-CCCEEEE-EEcCH--HHHHHHHHHHHhhccccCCCceEEEeChHHHH------hcCC
Confidence            5899998449999999998875 4677763 45432  11111110    0001121  12 23555665      3789


Q ss_pred             EEEEcCCchhHHHHHHHHHH--cCCCEEEeCC-CCC
Q 022250          109 VVIDFTDASTVYDNVKQATA--FGMRSVVYVP-HIQ  141 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~--~G~~vVigTT-G~~  141 (300)
                      +||-+.++....+.+.....  .+ .+|+-++ |++
T Consensus        71 vVilavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~  105 (219)
T TIGR01915        71 VVILAVPWDHVLKTLESLRDELSG-KLVISPVVPLA  105 (219)
T ss_pred             EEEEECCHHHHHHHHHHHHHhccC-CEEEEeccCce
Confidence            99988888877776654432  24 4555544 654

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.32  E-value=0.027  Score=52.44  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=26.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ..||+|+|+ |.||..++..+.. .+++++ ++|.+
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~-~G~~V~-l~d~~   36 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCAL-AGYDVL-LNDVS   36 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHH-CCCeEE-EEeCC
Confidence            368999998 9999999998874 577766 46754

>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]

Probab=96.30  E-value=0.054  Score=49.78  Aligned_cols=135  Identities=11%  Similarity=0.093  Sum_probs=81.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ++++|.|+|.| .=++.+++.+...+...++.. .++.   .+..+..+-....|---.+-+.+.+.    +.+.|++||
T Consensus         1 ~~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~~g---~~l~~~~~~~~~~G~l~~e~l~~~l~----e~~i~llID   72 (257)
T COG2099           1 SMMRILLLGGT-SDARALAKKLAAAPVDIILSSLTGYG---AKLAEQIGPVRVGGFLGAEGLAAFLR----EEGIDLLID   72 (257)
T ss_pred             CCceEEEEecc-HHHHHHHHHhhccCccEEEEEccccc---ccchhccCCeeecCcCCHHHHHHHHH----HcCCCEEEE
Confidence            46889999986 558999999987774444332 2221   11111000000000000122334444    478999999


Q ss_pred             cCCchhH---HHHHHHHHHcCCCEE-EeCCCCCH--------HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhc
Q 022250          113 FTDASTV---YDNVKQATAFGMRSV-VYVPHIQL--------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (300)
Q Consensus       113 fT~p~~~---~~~~~~al~~G~~vV-igTTG~~~--------e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~  180 (300)
                      .|||-+.   ...++.|-+.|+|.+ -+-|+|..        +..+++.+++++.+-.++.    .+|.+-+..+.+...
T Consensus        73 ATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVfl----t~G~~~l~~f~~~~~  148 (257)
T COG2099          73 ATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFL----TTGRQNLAHFVAADA  148 (257)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEE----ecCccchHHHhcCcc
Confidence            9999776   556678899999988 45566543        3455666667666556665    678877766664443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.30  E-value=0.023  Score=53.52  Aligned_cols=114  Identities=14%  Similarity=0.131  Sum_probs=70.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||+|+|+ |++|+.+++.+.. -+.++.. +|++.  .. .+.+   ...|...  ++++.+.+      .++|+||+
T Consensus       152 g~kvlViG~-G~iG~~~a~~L~~-~Ga~V~v-~~r~~--~~-~~~~---~~~G~~~~~~~~l~~~l------~~aDiVI~  216 (296)
T PRK08306        152 GSNVLVLGF-GRTGMTLARTLKA-LGANVTV-GARKS--AH-LARI---TEMGLSPFHLSELAEEV------GKIDIIFN  216 (296)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHH-CCCEEEE-EECCH--HH-HHHH---HHcCCeeecHHHHHHHh------CCCCEEEE
Confidence            479999998 9999999998875 4676554 56542  11 1111   1233332  34666776      47999998


Q ss_pred             cCCchhHHHHHHHHHHcCCCEE-EeC-CCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSV-VYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV-igT-TG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      .+++....+.....++.+.-+| +++ +|-++     + +.++++|+++++.+|..=++
T Consensus       217 t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd-----~-~~a~~~Gv~~~~~~~lpg~v  269 (296)
T PRK08306        217 TIPALVLTKEVLSKMPPEALIIDLASKPGGTD-----F-EYAEKRGIKALLAPGLPGKV  269 (296)
T ss_pred             CCChhhhhHHHHHcCCCCcEEEEEccCCCCcC-----e-eehhhCCeEEEEECCCCccC
Confidence            7755433333333344444333 333 34443     2 36788999999999987665

>PRK08328 hypothetical protein; Provisional

Probab=96.28  E-value=0.028  Score=50.97  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=26.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||.|+|+ |..|..+++.+.. .++.=+-++|.
T Consensus        27 ~~~VlIiG~-GGlGs~ia~~La~-~Gvg~i~lvD~   59 (231)
T PRK08328         27 KAKVAVVGV-GGLGSPVAYYLAA-AGVGRILLIDE   59 (231)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence            468999999 9999999999875 46555556774

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=96.28  E-value=0.037  Score=54.91  Aligned_cols=122  Identities=10%  Similarity=0.080  Sum_probs=71.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCC---Ccchhhh----hcCc------------C--CCCccee-
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV---GEDIGMV----CDME------------Q--PLEIPVM-   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~---g~d~~~~----~g~~------------~--~~gv~v~-   91 (300)
                      +.||+|.|+||-+|+..++.+.+.|+ +++++.......   ...+.++    +.+.            .  ..+..++ 
T Consensus        57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~  136 (454)
T PLN02696         57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP  136 (454)
T ss_pred             ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence            57999999999999999999987765 899887653211   0000000    0000            0  0012333 


Q ss_pred             --cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250           92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus        92 --~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                        +.+.++..    ..++|+||..-.--+-..-...|+++|+.|....--.--.--+.|.++++++++.++
T Consensus       137 G~egl~~la~----~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~Il  203 (454)
T PLN02696        137 GEEGIVEVAR----HPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKIL  203 (454)
T ss_pred             CHHHHHHHHc----CCCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEe
Confidence              34555554    356899987766555555568899999998876421000011345666666665443

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=96.26  E-value=0.013  Score=54.61  Aligned_cols=79  Identities=22%  Similarity=0.320  Sum_probs=48.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC-
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-  114 (300)
                      |||.|+|++|-+|+.+.+.+.+ .++++++. ++..  -|+            .-.+.+.+.+.    ..+||+||.+. 
T Consensus         1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~--~dl------------~d~~~~~~~~~----~~~pd~Vin~aa   60 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD--LDL------------TDPEAVAKLLE----AFKPDVVINCAA   60 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC--S-T------------TSHHHHHHHHH----HH--SEEEE---
T ss_pred             CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh--cCC------------CCHHHHHHHHH----HhCCCeEeccce
Confidence            7999999999999999998875 67888775 4321  111            11223445554    24799999974 


Q ss_pred             ---------Cchh--------HHHHHHHHHHcCCCEE
Q 022250          115 ---------DAST--------VYDNVKQATAFGMRSV  134 (300)
Q Consensus       115 ---------~p~~--------~~~~~~~al~~G~~vV  134 (300)
                               .|+.        ....++.|.+.|.++|
T Consensus        61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li   97 (286)
T PF04321_consen   61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLI   97 (286)
T ss_dssp             ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEE
T ss_pred             eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEE
Confidence                     2222        2345677778888887

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=96.26  E-value=0.027  Score=53.29  Aligned_cols=33  Identities=27%  Similarity=0.209  Sum_probs=28.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |+||.|.|++|-+|+.+++.+.+..+.+++++.
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~   33 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD   33 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence            468999999999999999999866678888753

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.25  E-value=0.024  Score=53.66  Aligned_cols=98  Identities=16%  Similarity=0.196  Sum_probs=55.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc--CC---------CCcceecCHHHHHhccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--QP---------LEIPVMSDLTMVLGSIS  102 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~--~~---------~gv~v~~dl~~~l~~~~  102 (300)
                      ||+||+|+|+ |.||..++..+.+. +.++.. ++++..-+...+ .|..  ..         ..+...++.+ .+    
T Consensus         1 ~~mkI~IiG~-G~mG~~~A~~L~~~-G~~V~~-~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~----   71 (341)
T PRK08229          1 MMARICVLGA-GSIGCYLGGRLAAA-GADVTL-IGRARIGDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDPA-AL----   71 (341)
T ss_pred             CCceEEEECC-CHHHHHHHHHHHhc-CCcEEE-EecHHHHHHHHh-cCceeecCCCcceecccceeEeccChh-hc----
Confidence            6789999998 99999999988754 677665 454310000000 0100  00         0112334543 33    


Q ss_pred             ccCCccEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCH
Q 022250          103 QSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (300)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~  142 (300)
                        .++|+||.++.+....+.+.....   .+..++.-+.|+..
T Consensus        72 --~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~  112 (341)
T PRK08229         72 --ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRN  112 (341)
T ss_pred             --cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence              478999988766665555544433   34444545568864

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.20  E-value=0.0059  Score=58.62  Aligned_cols=34  Identities=29%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |++||+|+|+ ||+||.+.+.+.+.+++|+|++=|
T Consensus         1 m~~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd   34 (342)
T PTZ00353          1 LPITVGINGF-GPVGKAVLFASLTDPLVTVVAVND   34 (342)
T ss_pred             CCeEEEEECC-ChHHHHHHHHHHhcCCcEEEEecC
Confidence            4589999998 999999999988778999999876

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.19  E-value=0.046  Score=49.27  Aligned_cols=124  Identities=18%  Similarity=0.207  Sum_probs=68.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh-hhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||+|+|+ |.+|..+++.+.. .++.-+-++|.+.. -.+... +.......|-+-.+.+.+.+.    +..+++=|+
T Consensus        21 ~~~VlivG~-GglGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~----~~np~~~i~   94 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAA-AGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLR----AINPDVEIE   94 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHH----HhCCCCEEE
Confidence            479999998 9999999999875 46666667775321 011111 000000112111112222232    235665554


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      .-+.....+++...+ .+.++|+.++. +.+....|.++|.+.++|++.+....
T Consensus        95 ~~~~~i~~~~~~~~~-~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~g  146 (228)
T cd00757          95 AYNERLDAENAEELI-AGYDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVLG  146 (228)
T ss_pred             EecceeCHHHHHHHH-hCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            432222233333333 35788888775 33455678888888889988876544

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.14  E-value=0.031  Score=49.54  Aligned_cols=107  Identities=11%  Similarity=0.192  Sum_probs=63.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      ++|+|+|+ |+||+.+++.+.+ .+.+++ ++|.+.  ....++.   ..++....+ .++++.     .++|+++-++.
T Consensus        29 k~v~I~G~-G~vG~~~A~~L~~-~G~~Vv-v~D~~~--~~~~~~~---~~~g~~~v~-~~~l~~-----~~~Dv~vp~A~   94 (200)
T cd01075          29 KTVAVQGL-GKVGYKLAEHLLE-EGAKLI-VADINE--EAVARAA---ELFGATVVA-PEEIYS-----VDADVFAPCAL   94 (200)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEcCCH--HHHHHHH---HHcCCEEEc-chhhcc-----ccCCEEEeccc
Confidence            68999998 9999999998875 688998 677642  1222222   122433333 355654     47999985543


Q ss_pred             chhH-HHHHHHHHHcCCCEEEeCC-C-CC-HHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          116 ASTV-YDNVKQATAFGMRSVVYVP-H-IQ-LETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       116 p~~~-~~~~~~al~~G~~vVigTT-G-~~-~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      .... .+++   .+.+.++|++-. + ++ ++.    .+.-+++|  ++|.|-|
T Consensus        95 ~~~I~~~~~---~~l~~~~v~~~AN~~~~~~~~----~~~L~~~G--i~~~Pd~  139 (200)
T cd01075          95 GGVINDDTI---PQLKAKAIAGAANNQLADPRH----GQMLHERG--ILYAPDY  139 (200)
T ss_pred             ccccCHHHH---HHcCCCEEEECCcCccCCHhH----HHHHHHCC--CEEeCce
Confidence            3222 3333   345688888865 3 44 332    22235544  4565644

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.12  E-value=0.036  Score=51.60  Aligned_cols=100  Identities=15%  Similarity=0.135  Sum_probs=55.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--------hh---cCc-------CCCCcceecCHHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--------VC---DME-------QPLEIPVMSDLTM   96 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~--------~~---g~~-------~~~gv~v~~dl~~   96 (300)
                      .||+|+|+ |.||..++..+.. .+.++. ++|.+... +.+..        +.   .+.       ....+.+++|+++
T Consensus         4 ~kIaViGa-G~mG~~iA~~la~-~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~   80 (287)
T PRK08293          4 KNVTVAGA-GVLGSQIAFQTAF-HGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE   80 (287)
T ss_pred             cEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence            68999998 9999999998874 467755 45643200 00000        00   000       0123456788888


Q ss_pred             HHhcccccCCccEEEEcCCch--hHHHHHHH---HHHcCCCEEEeCCCCCHHH
Q 022250           97 VLGSISQSKARAVVIDFTDAS--TVYDNVKQ---ATAFGMRSVVYVPHIQLET  144 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~--~~~~~~~~---al~~G~~vVigTTG~~~e~  144 (300)
                      ++      .++|+||.+.+.+  ...+.+..   ++..+..+++-|++++..+
T Consensus        81 a~------~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~  127 (287)
T PRK08293         81 AV------KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ  127 (287)
T ss_pred             Hh------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence            77      3789999776522  22333332   2333333334455666544

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.12  E-value=0.032  Score=51.90  Aligned_cols=99  Identities=12%  Similarity=0.153  Sum_probs=56.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------cCc----C-------CCCcceecCHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------DME----Q-------PLEIPVMSDLT   95 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---------g~~----~-------~~gv~v~~dl~   95 (300)
                      -||+|+|+ |.||..++..+.+ .++++. ++|.+.  ..+..+.         +..    .       ...+..+++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~-~G~~V~-~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   76 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAV-SGFQTT-LVDIKQ--EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK   76 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHh-CCCcEE-EEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence            47999998 9999999998874 477766 467532  1111100         000    0       01234567888


Q ss_pred             HHHhcccccCCccEEEEcCCchhH-H-HH---HHHHHHcCCCEEEeCCCCCHHHH
Q 022250           96 MVLGSISQSKARAVVIDFTDASTV-Y-DN---VKQATAFGMRSVVYVPHIQLETV  145 (300)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~-~~---~~~al~~G~~vVigTTG~~~e~~  145 (300)
                      +++      .++|+||.+.+.+.. . ..   +...+..+.-+++-|+.++..++
T Consensus        77 ~~~------~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l  125 (288)
T PRK09260         77 AAV------ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI  125 (288)
T ss_pred             Hhh------cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence            777      478999977644322 1 22   22233334334455667777553

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.10  E-value=0.029  Score=53.65  Aligned_cols=104  Identities=17%  Similarity=0.138  Sum_probs=60.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      ++|+|+|+ |+||+.+++.+.+.-++++.+ +|+... ...        ...+...+++++++.      .+|+|+-..+
T Consensus       147 ~~VgIIG~-G~IG~~vA~~L~~~~g~~V~~-~d~~~~-~~~--------~~~~~~~~~l~ell~------~aDvIvl~lP  209 (332)
T PRK08605        147 LKVAVIGT-GRIGLAVAKIFAKGYGSDVVA-YDPFPN-AKA--------ATYVDYKDTIEEAVE------GADIVTLHMP  209 (332)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCcc-HhH--------HhhccccCCHHHHHH------hCCEEEEeCC
Confidence            68999998 999999999885445788765 665421 111        112333468999984      7899986654


Q ss_pred             chhHHHHH-----HHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCC
Q 022250          116 ASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (300)
Q Consensus       116 p~~~~~~~-----~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i  157 (300)
                      ....-..+     ...++.|.-+|-.++|.-.++ +.|.++.++..+
T Consensus       210 ~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~g~i  255 (332)
T PRK08605        210 ATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT-KALLDALDNGLI  255 (332)
T ss_pred             CCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHHhCCe
Confidence            32222222     223445554444444643333 345555555444

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.06  E-value=0.025  Score=54.80  Aligned_cols=119  Identities=9%  Similarity=0.040  Sum_probs=69.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEE---EEEEecCCCCcchhhhhcCcCCCCcceecCHHH--HHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEV---AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eL---vg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~--~l~~~~~~~~~DVV  110 (300)
                      +||+|+|+||-+|+.+++.+.+++++.+   ...-+....|+.. .+.|    ....+. ++++  .+      .++|++
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~----~~~~v~-~~~~~~~~------~~vDiv   68 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG----TTGTLQ-DAFDIDAL------KALDII   68 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC----CcceEE-cCcccccc------cCCCEE
Confidence            4899999999999999998887777753   3322222222221 1211    112222 2222  33      478998


Q ss_pred             EEcCCchhHHHHHHHHHHcCCC-EEEeCC-CC-------------CHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          111 IDFTDASTVYDNVKQATAFGMR-SVVYVP-HI-------------QLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~-vVigTT-G~-------------~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      +=+...+...+....+.++|.+ +||-.+ .|             +++   .|... .++|+.-+..||=|.-..
T Consensus        69 ffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~---~i~~~-~~~gi~~ianPNCst~~l  139 (366)
T TIGR01745        69 ITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQD---VITDG-LNNGIRTFVGGNCTVSLM  139 (366)
T ss_pred             EEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHH---HHHhH-HhCCcCeEECcCHHHHHH
Confidence            8334556668888999999975 455444 23             233   33332 234553367799776543

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.04  E-value=0.0081  Score=57.24  Aligned_cols=91  Identities=11%  Similarity=0.023  Sum_probs=62.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .+++|+|+ |.||+.+++.+.....++-+.++|++.  ..+..++..-..++  +.+++|.++++.      ++|+||-+
T Consensus       129 ~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~--~~~~~~~~~~~~~g~~v~~~~~~~eav~------~aDiVita  199 (325)
T TIGR02371       129 SVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTP--STREKFALRASDYEVPVRAATDPREAVE------GCDILVTT  199 (325)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhhCCcEEEeCCHHHHhc------cCCEEEEe
Confidence            67999997 999999999988777888888898753  22222221001234  456789999984      79999977


Q ss_pred             CCchhHHHHH-HHHHHcCCCEE-EeC
Q 022250          114 TDASTVYDNV-KQATAFGMRSV-VYV  137 (300)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV-igT  137 (300)
                      |+. .. .++ ...++.|.++. ||+
T Consensus       200 T~s-~~-P~~~~~~l~~g~~v~~vGs  223 (325)
T TIGR02371       200 TPS-RK-PVVKADWVSEGTHINAIGA  223 (325)
T ss_pred             cCC-CC-cEecHHHcCCCCEEEecCC
Confidence            732 11 222 34568898886 664

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.04  E-value=0.045  Score=49.03  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=26.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ..||+|+|+ |.||..+++.+.. .++.=+.++|.+
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~-~Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALAR-SGVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            468999998 9999999999875 466545567743

>PRK06046 alanine dehydrogenase; Validated

Probab=96.03  E-value=0.012  Score=56.15  Aligned_cols=91  Identities=14%  Similarity=0.133  Sum_probs=62.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-cCCCC--cceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ..+|+|+|+ |.+|+.+++.+...++++.+.++|++.  ..+..++.. ...++  +.+++|+++++      . +|+|+
T Consensus       129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~l------~-aDiVv  198 (326)
T PRK06046        129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTK--SSAEKFVERMSSVVGCDVTVAEDIEEAC------D-CDILV  198 (326)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHh------h-CCEEE
Confidence            368999997 999999999998888999999999754  222222210 01234  45578999887      3 89999


Q ss_pred             EcCCchhHHHHH-HHHHHcCCCEE-EeC
Q 022250          112 DFTDASTVYDNV-KQATAFGMRSV-VYV  137 (300)
Q Consensus       112 DfT~p~~~~~~~-~~al~~G~~vV-igT  137 (300)
                      .+|+...  ..+ ...++.|.+|. ||+
T Consensus       199 ~aTps~~--P~~~~~~l~~g~hV~~iGs  224 (326)
T PRK06046        199 TTTPSRK--PVVKAEWIKEGTHINAIGA  224 (326)
T ss_pred             EecCCCC--cEecHHHcCCCCEEEecCC
Confidence            8875432  222 33467899876 664

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.02  E-value=0.033  Score=51.97  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=26.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +.||+|+|+ |.||..++..+.. .+++++ ++|++
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~   36 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAA-AGMDVW-LLDSD   36 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeCC
Confidence            357999998 9999999999875 478776 46653

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.00  E-value=0.087  Score=48.28  Aligned_cols=120  Identities=13%  Similarity=0.096  Sum_probs=62.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-eecC---HHHHHhcccccCC-ccEEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSD---LTMVLGSISQSKA-RAVVI  111 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~d---l~~~l~~~~~~~~-~DVVI  111 (300)
                      ||.|.|+||.+|+.+++.+.+ .++++.+....... ..   ..+.   ..+. -++|   +.+++.....-.. +|.++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~-~~---~~~~---~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~   72 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSS-SA---GPNE---KHVKFDWLDEDTWDNPFSSDDGMEPEISAVY   72 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCcc-cc---CCCC---ccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence            589999999999999999875 57887766543210 00   0111   0111 1233   3444410000024 78887


Q ss_pred             EcCCc-----hhHHHHHHHHHHcCCCEEEeCC--CC--CHHHHHHHHHHhhhC-CCeEE-EcCC
Q 022250          112 DFTDA-----STVYDNVKQATAFGMRSVVYVP--HI--QLETVSALSAFCDKA-SMGCL-IAPT  164 (300)
Q Consensus       112 DfT~p-----~~~~~~~~~al~~G~~vVigTT--G~--~~e~~~~L~~~a~~~-~i~iv-~a~N  164 (300)
                      ..+.+     +.....+..|.++|+.-|+-++  +-  .......++++.++. +++.. +-|+
T Consensus        73 ~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~  136 (285)
T TIGR03649        73 LVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPT  136 (285)
T ss_pred             EeCCCCCChhHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEecc
Confidence            65532     2345667788889975443322  21  111223344555553 66543 4444

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PLN02778 3,5-epimerase/4-reductase

Probab=95.99  E-value=0.047  Score=50.99  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=29.5

Q ss_pred             ecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEE
Q 022250           28 STNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (300)
Q Consensus        28 ~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv   64 (300)
                      +..|..++|||.|.|++|-+|+.+++.+.+ .+.+++
T Consensus         2 ~~~~~~~~~kiLVtG~tGfiG~~l~~~L~~-~g~~V~   37 (298)
T PLN02778          2 NGTAGSATLKFLIYGKTGWIGGLLGKLCQE-QGIDFH   37 (298)
T ss_pred             CCCCCCCCCeEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence            445666779999999999999999998875 466765

>KOG2742 consensus Predicted oxidoreductase [General function prediction only]

Probab=95.98  E-value=0.0032  Score=59.91  Aligned_cols=106  Identities=15%  Similarity=0.127  Sum_probs=79.5

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCccEEEEcCCc
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVIDfT~p  116 (300)
                      |+|.|. |-..+..+-.+.+.+ +++-+++.+..  ..+...+   ....++.| +.+++++.    +.++|.|...-+|
T Consensus         5 v~v~GT-g~~arv~iP~l~e~~-f~v~A~w~Rt~--~ea~a~a---a~~~v~~~t~~~deiLl----~~~vdlv~i~lpp   73 (367)
T KOG2742|consen    5 VGVFGT-GIFARVLIPLLKEEG-FEVKAIWGRTK--TEAKAKA---AEMNVRKYTSRLDEILL----DQDVDLVCISLPP   73 (367)
T ss_pred             eeEecc-ChhHhhhhhhhhhcc-chHhhhhchhh--hHHHHhh---hccchhhccccchhhhc----cCCcceeEeccCC
Confidence            999995 999999988777655 88888887632  1112111   23455554 58888885    4677777666788


Q ss_pred             hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhh
Q 022250          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (300)
Q Consensus       117 ~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~  154 (300)
                      ..+.++...++..|+|||+.++.-+.++.+.+.++++.
T Consensus        74 ~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s  111 (367)
T KOG2742|consen   74 PLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYS  111 (367)
T ss_pred             ccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhc
Confidence            88899999999999999999998666777888877766

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.97  E-value=0.078  Score=53.22  Aligned_cols=123  Identities=11%  Similarity=0.064  Sum_probs=66.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCC-------------CCcchhhhhcCcCCCCcceecCHHHHHhc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS-------------VGEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~-------------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~  100 (300)
                      ||||+|+|+ |.+|..++-.+++. .+++++++ |.+.             ......+++..........++|+++++  
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i--   76 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHV--   76 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHH--
Confidence            579999997 99999999888764 36888875 5211             011122222100001245667777776  


Q ss_pred             ccccCCccEEEEcC-Cch--------------hHHH---HHHHHHHcCCCEEEeCC---CCCHHHHHHHHHHhhhCCCeE
Q 022250          101 ISQSKARAVVIDFT-DAS--------------TVYD---NVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGC  159 (300)
Q Consensus       101 ~~~~~~~DVVIDfT-~p~--------------~~~~---~~~~al~~G~~vVigTT---G~~~e~~~~L~~~a~~~~i~i  159 (300)
                          .++|+++.+- +|.              .+.+   .+...++.|.-||+.+|   |.+++-...|.+........+
T Consensus        77 ----~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v  152 (473)
T PLN02353         77 ----AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQI  152 (473)
T ss_pred             ----hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence                3789887653 232              1112   22223345777787877   565544444444221112345


Q ss_pred             EEcCCC
Q 022250          160 LIAPTL  165 (300)
Q Consensus       160 v~a~N~  165 (300)
                      .++|=|
T Consensus       153 ~~~PEr  158 (473)
T PLN02353        153 LSNPEF  158 (473)
T ss_pred             EECCCc
Confidence            555543

>PLN03139 formate dehydrogenase; Provisional

Probab=95.94  E-value=0.05  Score=53.20  Aligned_cols=66  Identities=21%  Similarity=0.095  Sum_probs=46.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |+||+.+++.+.. -++++.+ +|+..  .+.. ..   ...++..++++++++.      .+|+|+-..
T Consensus       199 gktVGIVG~-G~IG~~vA~~L~a-fG~~V~~-~d~~~--~~~~-~~---~~~g~~~~~~l~ell~------~sDvV~l~l  263 (386)
T PLN03139        199 GKTVGTVGA-GRIGRLLLQRLKP-FNCNLLY-HDRLK--MDPE-LE---KETGAKFEEDLDAMLP------KCDVVVINT  263 (386)
T ss_pred             CCEEEEEee-cHHHHHHHHHHHH-CCCEEEE-ECCCC--cchh-hH---hhcCceecCCHHHHHh------hCCEEEEeC
Confidence            368999997 9999999998874 6899865 67542  1111 11   2345555679999984      789988655


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       264 P  264 (386)
T PLN03139        264 P  264 (386)
T ss_pred             C
Confidence            3

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.93  E-value=0.066  Score=47.40  Aligned_cols=124  Identities=18%  Similarity=0.237  Sum_probs=63.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--hhcCc-CCCCcceecCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--VCDME-QPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~--~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      ..||.|+|+ |.+|..+++.+. ..++.=+-++|.+... .+...  +.... ...|-+-.....+.+.    .-+||+-
T Consensus        19 ~s~VlviG~-gglGsevak~L~-~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~----~lNp~v~   92 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLV-LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQ----ELNPNVK   92 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHH----HHCCCCE
Confidence            478999999 889999999987 4677666678753210 11110  00000 0011111111122222    1356654


Q ss_pred             EEcCC--chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          111 IDFTD--ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       111 IDfT~--p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      |..-.  +....++..... ...++|+.++.- .+....+.++|+++++|++++....
T Consensus        93 i~~~~~~~~~~~~~~~~~~-~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G  148 (198)
T cd01485          93 LSIVEEDSLSNDSNIEEYL-QKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG  148 (198)
T ss_pred             EEEEecccccchhhHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence            44321  111122222222 246777776543 4455667788888888888776543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.93  E-value=0.086  Score=49.58  Aligned_cols=73  Identities=23%  Similarity=0.204  Sum_probs=44.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchh--------hhhcCcC---------CCCcceecCHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIG--------MVCDMEQ---------PLEIPVMSDLTM   96 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~--------~~~g~~~---------~~gv~v~~dl~~   96 (300)
                      ++||+|+|+ |.||..++..+.+ .+++++ ++|++.. ...+.        .+...+.         ...+....|+++
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~-~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~   78 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFAR-AGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD   78 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHH-CCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH
Confidence            358999997 9999999998875 477766 4675420 00000        0110000         001346678888


Q ss_pred             HHhcccccCCccEEEEcCCc
Q 022250           97 VLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p  116 (300)
                      ++      .++|+|+.+.+.
T Consensus        79 a~------~~ad~Vi~avpe   92 (308)
T PRK06129         79 AV------ADADYVQESAPE   92 (308)
T ss_pred             hh------CCCCEEEECCcC
Confidence            87      378999976643

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.90  E-value=0.14  Score=53.82  Aligned_cols=102  Identities=18%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcc--eecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .||+|+|+ |.||..+++.+.+.. ..++. ++|++.  ......    .+.|+.  ..+++++++      .++|+||.
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~-~~d~~~--~~~~~a----~~~g~~~~~~~~~~~~~------~~aDvVil   69 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVV-AVDRRA--KSLELA----VSLGVIDRGEEDLAEAV------SGADVIVL   69 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEE-EEECCh--hHHHHH----HHCCCCCcccCCHHHHh------cCCCEEEE
Confidence            68999997 999999999987542 23544 467643  111111    123332  345677777      37899998


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHH
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAF  151 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~  151 (300)
                      +++|....+.+......  ...+|+-..+....-.+.+++.
T Consensus        70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~  110 (735)
T PRK14806         70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAV  110 (735)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHh
Confidence            88888777666655432  2235554445443334445544

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.89  E-value=0.15  Score=51.10  Aligned_cols=133  Identities=23%  Similarity=0.203  Sum_probs=74.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec--CHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      -||.|+|. |+.|...++.+. ..+.++++ .|...  .....+    .+.|+.+..  +..+.+      .++|+||..
T Consensus        13 ~~v~V~G~-G~sG~aa~~~L~-~~G~~v~~-~D~~~--~~~~~l----~~~g~~~~~~~~~~~~l------~~~D~VV~S   77 (488)
T PRK03369         13 APVLVAGA-GVTGRAVLAALT-RFGARPTV-CDDDP--DALRPH----AERGVATVSTSDAVQQI------ADYALVVTS   77 (488)
T ss_pred             CeEEEEcC-CHHHHHHHHHHH-HCCCEEEE-EcCCH--HHHHHH----HhCCCEEEcCcchHhHh------hcCCEEEEC
Confidence            58999998 999999998665 56788776 77432  111111    234554432  233444      368988865


Q ss_pred             CC-chhHHHHHHHHHHcCCCEE---------------------EeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          114 TD-ASTVYDNVKQATAFGMRSV---------------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       114 T~-p~~~~~~~~~al~~G~~vV---------------------igTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      .- |.. .+.+..|.+.|+|++                     ||-||-+-.  -...|..+-++.+.+.....|  +|+
T Consensus        78 pGi~~~-~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~  154 (488)
T PRK03369         78 PGFRPT-APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGS  154 (488)
T ss_pred             CCCCCC-CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--Cch
Confidence            42 332 344555555554443                     444443211  123344555555666666677  676


Q ss_pred             HHHHHHHHHhccCCCCeEEEEc
Q 022250          170 ILLQQAAISASFHYKNVEIVES  191 (300)
Q Consensus       170 ~ll~~~a~~~~~~~~dieIiE~  191 (300)
                      .++..+    . ...|+-|+|.
T Consensus       155 p~~~~~----~-~~~~~~VlE~  171 (488)
T PRK03369        155 PVLDVL----D-EPAELLAVEL  171 (488)
T ss_pred             HHHHhc----c-CCCCEEEEEC
Confidence            664422    1 2346677776

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.88  E-value=0.068  Score=51.32  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=27.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ..||+|+|+ |.+|..+++.+.. .++.-+.++|.+
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~-aGvg~i~lvD~D   57 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVR-AGIGKLTIADRD   57 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCC
Confidence            468999998 9999999999875 577556677853

>PRK07574 formate dehydrogenase; Provisional

Probab=95.86  E-value=0.075  Score=51.97  Aligned_cols=65  Identities=23%  Similarity=0.230  Sum_probs=45.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|+|+|+ |+||+.+++.+.. -++++.+ +|+.....+   ..   ...++..+.++++++.      .+|+|+-..+
T Consensus       193 ktVGIvG~-G~IG~~vA~~l~~-fG~~V~~-~dr~~~~~~---~~---~~~g~~~~~~l~ell~------~aDvV~l~lP  257 (385)
T PRK07574        193 MTVGIVGA-GRIGLAVLRRLKP-FDVKLHY-TDRHRLPEE---VE---QELGLTYHVSFDSLVS------VCDVVTIHCP  257 (385)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCEEEE-ECCCCCchh---hH---hhcCceecCCHHHHhh------cCCEEEEcCC
Confidence            68999998 9999999998874 5888774 665421111   11   1335555678999984      7899986553

>PRK07411 hypothetical protein; Validated

Probab=95.85  E-value=0.045  Score=53.55  Aligned_cols=98  Identities=15%  Similarity=0.208  Sum_probs=60.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCc-------chh---------hhhcCcCCCCcceec-
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE-------DIG---------MVCDMEQPLEIPVMS-   92 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~-------d~~---------~~~g~~~~~gv~v~~-   92 (300)
                      ..||.|+|| |.+|..+++.+.. .++.=+.++|.+     ..++       |++         .+..+.+...+..+. 
T Consensus        38 ~~~VlivG~-GGlG~~va~~La~-~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~  115 (390)
T PRK07411         38 AASVLCIGT-GGLGSPLLLYLAA-AGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET  115 (390)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence            468999999 9999999998874 566666677732     1111       111         011111111222221 


Q ss_pred             -----CHHHHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-CC
Q 022250           93 -----DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI  140 (300)
Q Consensus        93 -----dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G~  140 (300)
                           +..+.+      .++|+|||++..-.. .-.-..|.+.++|+|.|.. ||
T Consensus       116 ~~~~~~~~~~~------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~  164 (390)
T PRK07411        116 RLSSENALDIL------APYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF  164 (390)
T ss_pred             ccCHHhHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence                 234455      479999999864444 4455788999999998754 54

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.83  E-value=0.09  Score=46.61  Aligned_cols=126  Identities=15%  Similarity=0.158  Sum_probs=65.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||.|+|+ |.+|..+++.+.. .++.=+-++|.+.. -.+.... +-.....|-+-.+.+.+.+.    .-.+++-|+
T Consensus        21 ~~~VlviG~-GglGs~ia~~La~-~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~----~~np~v~i~   94 (202)
T TIGR02356        21 NSHVLIIGA-GGLGSPAALYLAG-AGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLR----ELNSDIQVT   94 (202)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHH----HhCCCCEEE
Confidence            468999998 9999999999875 46544445775321 0111110 00000111111111222222    134555544


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiG  168 (300)
                      .-......+++...+ .+..+|+.++.- .+....|.++|++.++|++.+.+....
T Consensus        95 ~~~~~i~~~~~~~~~-~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g~~  148 (202)
T TIGR02356        95 ALKERVTAENLELLI-NNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVGFG  148 (202)
T ss_pred             EehhcCCHHHHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeccCe
Confidence            322222223333333 467788877643 334556888888888888887655433

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.83  E-value=0.048  Score=44.84  Aligned_cols=121  Identities=14%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .||+|+|+ |.+|..+++.+.. .++.=+-++|.+.. -.+.... .......|.+-.+-+.+.+.+    ..|++=|..
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~~-~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~----~np~~~v~~   76 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLAR-SGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQE----INPDVEVEA   76 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHHH-HTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHH----HSTTSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-hCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHH----hcCceeeee
Confidence            68999998 9999999999875 46655557885321 0111110 000001122111222222321    233433332


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      -+.....++....+ .+..+|+.++.- .+....|.++|++.++|++++..
T Consensus        77 ~~~~~~~~~~~~~~-~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~  125 (135)
T PF00899_consen   77 IPEKIDEENIEELL-KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGV  125 (135)
T ss_dssp             EESHCSHHHHHHHH-HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEE
T ss_pred             eecccccccccccc-cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEe
Confidence            21111233333333 466777776543 23445677778888888776543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.83  E-value=0.059  Score=51.49  Aligned_cols=112  Identities=16%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             ccccCcccccccceeeEee---cCCC--CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcC
Q 022250           10 CRMHHISQNVKAKRFISCS---TNPP--QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ   84 (300)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~---~~~~--~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~   84 (300)
                      ||.+..-+.+|.+++..+.   ..+.  -.-.+++|+|. |++|+++++.++ -=++++.. +++... +...      .
T Consensus       116 R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~-GrIG~avA~r~~-~Fgm~v~y-~~~~~~-~~~~------~  185 (324)
T COG1052         116 RRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGL-GRIGQAVARRLK-GFGMKVLY-YDRSPN-PEAE------K  185 (324)
T ss_pred             hchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECC-CHHHHHHHHHHh-cCCCEEEE-ECCCCC-hHHH------h
Confidence            4555555666777666653   1111  12378999996 999999999877 56788765 554321 1111      1


Q ss_pred             CCCcceecCHHHHHhcccccCCccEEEEcCC--chhH-HHHHHHHHHcCCCEEEeCC
Q 022250           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTD--ASTV-YDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus        85 ~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~--p~~~-~~~~~~al~~G~~vVigTT  138 (300)
                      ..+.. |-+++++++      .+|+++...+  |++. .=+.+.....+..+++=-|
T Consensus       186 ~~~~~-y~~l~ell~------~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNt  235 (324)
T COG1052         186 ELGAR-YVDLDELLA------ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNT  235 (324)
T ss_pred             hcCce-eccHHHHHH------hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEEC
Confidence            22333 344999995      7899887653  3322 2233344445554444444

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.057  Score=51.21  Aligned_cols=121  Identities=15%  Similarity=0.152  Sum_probs=76.3

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCc------chhhhh--cCc------------CCC-Cc----ce--
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE------DIGMVC--DME------------QPL-EI----PV--   90 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~------d~~~~~--g~~------------~~~-gv----~v--   90 (300)
                      |.|+|| |.+|+-++..+. ..+++=+-++|.+....      ....+.  |..            .++ .+    ..  
T Consensus        77 VVVVG~-GgVGSwv~nmL~-RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~~  154 (430)
T KOG2018|consen   77 VVVVGA-GGVGSWVANMLL-RSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLWT  154 (430)
T ss_pred             EEEEec-CchhHHHHHHHH-HhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhcC
Confidence            889999 999999999887 46887777777321100      000010  000            000 11    11  


Q ss_pred             ecCHHHHHhcccccCCccEEEEcC-CchhHHHHHHHHHHcCCCEEEeCC------------------CC---CHHHHHHH
Q 022250           91 MSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP------------------HI---QLETVSAL  148 (300)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVigTT------------------G~---~~e~~~~L  148 (300)
                      .++-++++.     .+||-|||+- +-+.-.+.+.+|-.+|++|+..|-                  ..   +..-..+|
T Consensus       155 ~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrL  229 (430)
T KOG2018|consen  155 SSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRRL  229 (430)
T ss_pred             CCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHHH
Confidence            245666764     6899999987 556668999999999999997641                  01   11223456


Q ss_pred             HHHhhhCCCeEEEcCCC
Q 022250          149 SAFCDKASMGCLIAPTL  165 (300)
Q Consensus       149 ~~~a~~~~i~iv~a~N~  165 (300)
                      +..--..|||+|+|.-.
T Consensus       230 rk~GI~~GIpVVFS~Ek  246 (430)
T KOG2018|consen  230 RKRGIEGGIPVVFSLEK  246 (430)
T ss_pred             HHhccccCCceEEecCC
Confidence            66666678999986543

>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]

Probab=95.74  E-value=0.063  Score=51.37  Aligned_cols=145  Identities=17%  Similarity=0.218  Sum_probs=85.4

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhc---------------------CCcEEEEEEec--CCCCcchhhhhcCc------
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAIDS--HSVGEDIGMVCDME------   83 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~---------------------~~~eLvg~vd~--~~~g~d~~~~~g~~------   83 (300)
                      .+|+||+|+|- |.-.+.+++-+...                     .+.|+++.+|.  ++.|+|+.+.+--.      
T Consensus         3 ~~~vrv~iiG~-Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~   81 (362)
T COG1260           3 TTMVRVAIIGV-GNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK   81 (362)
T ss_pred             cceEEEEEEec-cchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence            35899999997 99999988877542                     25688888874  34666664432100      


Q ss_pred             -----CCCCccee---------cCHHHHHhc---c-----------cccCCccEEEEcCC---chhHHHHHHHHHHcCCC
Q 022250           84 -----QPLEIPVM---------SDLTMVLGS---I-----------SQSKARAVVIDFTD---ASTVYDNVKQATAFGMR  132 (300)
Q Consensus        84 -----~~~gv~v~---------~dl~~~l~~---~-----------~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~  132 (300)
                           ...|+.+.         ..+.+.+..   .           ++..+.|+++.|.+   .++..-++..++++|++
T Consensus        82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a  161 (362)
T COG1260          82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA  161 (362)
T ss_pred             eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence                 11122211         012222220   0           11233444455543   45567788999999999


Q ss_pred             EEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHH-HHHHhc
Q 022250          133 SVVYVPHIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQ-AAISAS  180 (300)
Q Consensus       133 vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~-~a~~~~  180 (300)
                      .|-.+|-+.... ..+.+.++++|+|++ .=-.  .+|..++.+ +++.++
T Consensus       162 fvN~~P~~iA~d-P~~~~~fee~g~pi~-GDD~ksq~GaTi~h~~La~~f~  210 (362)
T COG1260         162 FVNAIPVFIASD-PAWVELFEEKGLPIA-GDDIKSQTGATILHRVLAQLFA  210 (362)
T ss_pred             eecccCccccCC-HHHHHHHHHcCCcee-ccchhhhcCCceeHHHHHHHHH
Confidence            999998543221 347777899888854 2333  478876654 444444

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=95.74  E-value=0.11  Score=48.12  Aligned_cols=137  Identities=15%  Similarity=0.095  Sum_probs=83.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCcCCC------------CcceecCH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQPL------------EIPVMSDL   94 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~---~g~~~~~------------gv~v~~dl   94 (300)
                      ..||+|.|+ |++|+..++.+.+ .+..++++.|+     ++.|-|..++   .......            +.. +-+.
T Consensus        38 g~~vaIqGf-GnVG~~~a~~L~e-~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~~  114 (254)
T cd05313          38 GKRVAISGS-GNVAQYAAEKLLE-LGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFEG  114 (254)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeCC
Confidence            379999998 9999999998874 68999999984     3445554433   1000000            111 2245


Q ss_pred             HHHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---H
Q 022250           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---G  168 (300)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---G  168 (300)
                      ++++.     .++||+|=+..-... .+++....+++..+|+|-- + ++++. .   +.-+++  .+++.|-+..   |
T Consensus       115 ~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a-~---~~L~~r--GI~vvPD~laNaGG  183 (254)
T cd05313         115 KKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEA-I---EVFRQA--GVLFAPGKAANAGG  183 (254)
T ss_pred             cchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHH-H---HHHHHC--CcEEECchhhcCCC
Confidence            56765     689999976654443 6777777778999999976 3 45532 2   223344  4566676643   2


Q ss_pred             HHH-HHHHHHHhccCCCC
Q 022250          169 SIL-LQQAAISASFHYKN  185 (300)
Q Consensus       169 v~l-l~~~a~~~~~~~~d  185 (300)
                      |.+ -.+..+.+..++|+
T Consensus       184 Vivs~~E~~qn~~~~~w~  201 (254)
T cd05313         184 VAVSGLEMSQNSQRLSWT  201 (254)
T ss_pred             eeeeHHHhhcccccccCC
Confidence            211 13445555555555

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.74  E-value=0.068  Score=46.35  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=24.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ||+|+|+ |.||..+++.+.. .++.=+-++|.
T Consensus         1 ~VlViG~-GglGs~ia~~La~-~Gvg~i~lvD~   31 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLAR-SGVGNLKLVDF   31 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            6999998 9999999999875 46654556774

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.72  E-value=0.15  Score=50.27  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=27.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ++||+|+|. |.||..++..+.+ .++++++ +|.+
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~-~G~~V~~-~D~~   35 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFAS-RQKQVIG-VDIN   35 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHh-CCCEEEE-EeCC
Confidence            479999997 9999999998875 4788765 6654

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=95.70  E-value=0.059  Score=52.37  Aligned_cols=68  Identities=16%  Similarity=0.171  Sum_probs=43.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .+.||+|+|++|.||+.+++.+.+ .++++.+ +|++.                   .++.++++      .++|+||.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~-~G~~V~~-~d~~~-------------------~~~~~~~~------~~aDlVila  149 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTL-SGYQVRI-LEQDD-------------------WDRAEDIL------ADAGMVIVS  149 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHH-CCCeEEE-eCCCc-------------------chhHHHHH------hcCCEEEEe
Confidence            358899999559999999999875 4666543 44321                   01334444      256777766


Q ss_pred             CCchhHHHHHHHHHH
Q 022250          114 TDASTVYDNVKQATA  128 (300)
Q Consensus       114 T~p~~~~~~~~~al~  128 (300)
                      ++++...+.+.....
T Consensus       150 vP~~~~~~~~~~l~~  164 (374)
T PRK11199        150 VPIHLTEEVIARLPP  164 (374)
T ss_pred             CcHHHHHHHHHHHhC
Confidence            666665555554433

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=95.69  E-value=0.13  Score=51.52  Aligned_cols=85  Identities=14%  Similarity=0.074  Sum_probs=58.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceecC---HHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d---l~~~l~~~~~~~~~DVV  110 (300)
                      -||.|+|+ |..|+.+++.+.+++  +++++|.+|.+..           ...++|++.+   +.+++.    ..++|-|
T Consensus       144 rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~-----------~g~~VpvlG~~~dL~~~v~----~~~IdeV  207 (463)
T PRK10124        144 RMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKP-----------GGVSNDWAGNLQQLVEDAK----AGKIHNV  207 (463)
T ss_pred             CcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCcc-----------ccCCCCcCCCHHHHHHHHH----hCCCCEE
Confidence            57999998 999999999998776  5899999985431           0123444544   444444    3578877


Q ss_pred             EEcCC---chhHHHHHHHHHHcCCCEEEe
Q 022250          111 IDFTD---ASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       111 IDfT~---p~~~~~~~~~al~~G~~vVig  136 (300)
                      |-..+   ++...+.+..|.+.++++.+-
T Consensus       208 iIAip~~~~~~l~ell~~~~~~~v~V~iv  236 (463)
T PRK10124        208 YIAMSMCDGARVKKLVRQLADTTCSVLLI  236 (463)
T ss_pred             EEeCCCcchHHHHHHHHHHHHcCCeEEEe
Confidence            74432   334466777888899988764

>PRK06545 prephenate dehydrogenase; Validated

Probab=95.69  E-value=0.18  Score=48.64  Aligned_cols=102  Identities=15%  Similarity=0.162  Sum_probs=58.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc--eecCHHHHHhcccccCCccEEEEcC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ||+|+|. |.||..+++.+.+. ++++. +++.+..........    ..++.  ..+++++++      .++|+||-++
T Consensus         2 ~I~iIG~-GliG~siA~~L~~~-G~~v~-i~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~------~~aDlVilav   68 (359)
T PRK06545          2 TVLIVGL-GLIGGSLALAIKAA-GPDVF-IIGYDPSAAQLARAL----GFGVIDELAADLQRAA------AEADLIVLAV   68 (359)
T ss_pred             eEEEEEe-CHHHHHHHHHHHhc-CCCeE-EEEeCCCHHHHHHHh----cCCCCcccccCHHHHh------cCCCEEEEeC
Confidence            6999997 99999999998753 44443 344332111111111    12221  235677776      4799999888


Q ss_pred             CchhHHHHHHHHHH--cCC-CEEEeCCCCCHHHHHHHHHH
Q 022250          115 DASTVYDNVKQATA--FGM-RSVVYVPHIQLETVSALSAF  151 (300)
Q Consensus       115 ~p~~~~~~~~~al~--~G~-~vVigTTG~~~e~~~~L~~~  151 (300)
                      +|+...+.+.....  ... .+|+-.++...+-.+.+.+.
T Consensus        69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~  108 (359)
T PRK06545         69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL  108 (359)
T ss_pred             CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence            88877777766553  222 34433334444444444444

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.69  E-value=0.061  Score=50.09  Aligned_cols=32  Identities=16%  Similarity=0.325  Sum_probs=25.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      -||+|+|+ |.||..++..+.. .+++++ ++|.+
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~-~G~~V~-l~d~~   35 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFAR-TGYDVT-IVDVS   35 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHh-cCCeEE-EEeCC
Confidence            47999998 9999999998875 577766 46753

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.68  E-value=0.065  Score=52.10  Aligned_cols=96  Identities=20%  Similarity=0.321  Sum_probs=59.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCc-------chh---------hhhcCcCCCCccee--
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE-------DIG---------MVCDMEQPLEIPVM--   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~-------d~~---------~~~g~~~~~gv~v~--   91 (300)
                      ..||.|+|+ |.+|..+++.+.. .++.=+.++|.+     ..++       |++         .+..+.+...+..+  
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~-~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~  118 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLAS-AGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE  118 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence            468999998 9999999999875 455444566632     1111       111         01111111222222  


Q ss_pred             ----cCHHHHHhcccccCCccEEEEcCCc-hhHHHHHHHHHHcCCCEEEeCC
Q 022250           92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTT  138 (300)
                          +++++++      .++|+|||++.. ++-...-..|.++++|+|.+..
T Consensus       119 ~i~~~~~~~~~------~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~  164 (370)
T PRK05600        119 RLTAENAVELL------NGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV  164 (370)
T ss_pred             ecCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence                2445566      479999999854 4445555789999999998754

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.62  E-value=0.12  Score=49.71  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=27.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||.|+|+ |.+|..+++.+.. .++.=+.++|.
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~   56 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVR-AGVGKVTIVDR   56 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            478999999 9999999998875 47755667775

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=95.62  E-value=0.042  Score=51.43  Aligned_cols=78  Identities=23%  Similarity=0.307  Sum_probs=53.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC-
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-  114 (300)
                      |||.|.|++|.+|+.+.+.+.  ++.++++.-..+               .++.-.+.+.+++.+    .+||+||... 
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA   59 (281)
T COG1091           1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA   59 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence            459999999999999999876  778888743221               122223456677763    6799999863 


Q ss_pred             ---------Cch--------hHHHHHHHHHHcCCCEE
Q 022250          115 ---------DAS--------TVYDNVKQATAFGMRSV  134 (300)
Q Consensus       115 ---------~p~--------~~~~~~~~al~~G~~vV  134 (300)
                               .|+        .....++.|.+.|.++|
T Consensus        60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lV   96 (281)
T COG1091          60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLV   96 (281)
T ss_pred             ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEE
Confidence                     222        23456678888888877

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.60  E-value=0.037  Score=49.15  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=23.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv   64 (300)
                      |||+|+|++|+||+.+++.+.+ .++++.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~-~g~~v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDD-NGLGVY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHh-CCCEEE
Confidence            5899999999999999998764 577754

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=95.51  E-value=0.16  Score=50.20  Aligned_cols=89  Identities=17%  Similarity=0.205  Sum_probs=61.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH---HHHhcccccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~---~~l~~~~~~~~~DV  109 (300)
                      .-||.|+|+ |..|+.+++.+.+++  +++++|.+|.+..  ..+      ...|+|+..+.+   +.++    +.++|.
T Consensus       128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~--~~~------~~~gvpVlg~~~dl~~~i~----~~~vd~  194 (451)
T TIGR03023       128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPD--ART------GVRGVPVLGKLDDLEELIR----EGEVDE  194 (451)
T ss_pred             CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCc--ccc------ccCCCCccCCHHHHHHHHH----hcCCCE
Confidence            367999997 999999999997755  5899999985431  111      124677765544   4454    367887


Q ss_pred             EEEcCCc---hhHHHHHHHHHHcCCCEEEe
Q 022250          110 VIDFTDA---STVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       110 VIDfT~p---~~~~~~~~~al~~G~~vVig  136 (300)
                      ||...+.   +...+.+..|.+.|+++.+-
T Consensus       195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~vv  224 (451)
T TIGR03023       195 VYIALPLAAEDRILELLDALEDLTVDVRLV  224 (451)
T ss_pred             EEEeeCcccHHHHHHHHHHHHhcCCEEEEe
Confidence            7755432   33466778888899988764

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.50  E-value=0.082  Score=51.70  Aligned_cols=96  Identities=19%  Similarity=0.301  Sum_probs=59.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCC-------cchh---------hhhcCcCCCCccee--
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVG-------EDIG---------MVCDMEQPLEIPVM--   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g-------~d~~---------~~~g~~~~~gv~v~--   91 (300)
                      ..||.|+|+ |.+|..+++.+.. .++.=+.++|.+     ..+       .|++         .+..+.+...+..+  
T Consensus        42 ~~~VlviG~-GGlGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         42 NARVLVIGA-GGLGSPTLLYLAA-AGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            468999999 9999999999874 566555667732     111       1111         01111011122112  


Q ss_pred             ----cCHHHHHhcccccCCccEEEEcCC-chhHHHHHHHHHHcCCCEEEeCC
Q 022250           92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigTT  138 (300)
                          ++..+++      .++|+|||++. +..-...-..|.++++|+|.|..
T Consensus       120 ~i~~~~~~~~~------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~  165 (392)
T PRK07878        120 RLDPSNAVELF------SQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI  165 (392)
T ss_pred             cCChhHHHHHH------hcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                1334555      47999999984 44445566889999999998754

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.48  E-value=0.024  Score=46.95  Aligned_cols=72  Identities=19%  Similarity=0.242  Sum_probs=45.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .-||.|+|+ |+||+.++..+... +++=+-+++++.  ..+..++.......  +.-++++.+.+.      ++|+||.
T Consensus        12 ~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~--~ra~~l~~~~~~~~~~~~~~~~~~~~~~------~~DivI~   81 (135)
T PF01488_consen   12 GKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTP--ERAEALAEEFGGVNIEAIPLEDLEEALQ------EADIVIN   81 (135)
T ss_dssp             TSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSH--HHHHHHHHHHTGCSEEEEEGGGHCHHHH------TESEEEE
T ss_pred             CCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHHHHHHcCccccceeeHHHHHHHHh------hCCeEEE
Confidence            368999998 99999999998865 666455677653  22333321001112  233567777774      7999998


Q ss_pred             cCCc
Q 022250          113 FTDA  116 (300)
Q Consensus       113 fT~p  116 (300)
                      .|+.
T Consensus        82 aT~~   85 (135)
T PF01488_consen   82 ATPS   85 (135)
T ss_dssp             -SST
T ss_pred             ecCC
Confidence            7753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.47  E-value=0.089  Score=50.53  Aligned_cols=138  Identities=20%  Similarity=0.082  Sum_probs=78.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc--ee---cCHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VM---SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~---~dl~~~l~~~~~~~~~DVV  110 (300)
                      -+|+|+|+ |.+|...++.+.. -+.+++++-.++..-+++.       ++|..  +.   .+.-+.+.     ..+|++
T Consensus       168 ~~V~I~G~-GGlGh~avQ~Aka-~ga~Via~~~~~~K~e~a~-------~lGAd~~i~~~~~~~~~~~~-----~~~d~i  233 (339)
T COG1064         168 KWVAVVGA-GGLGHMAVQYAKA-MGAEVIAITRSEEKLELAK-------KLGADHVINSSDSDALEAVK-----EIADAI  233 (339)
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-cCCeEEEEeCChHHHHHHH-------HhCCcEEEEcCCchhhHHhH-----hhCcEE
Confidence            47999998 9999999997764 4599887543321111222       22221  11   12223332     239999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHH-hhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEE
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV  189 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~-a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIi  189 (300)
                      ||+..+.+....++.....|.-+++|-++..+...-....+ .++  +.+.=|.+.+  .+-++++.+.+++..-..+|.
T Consensus       234 i~tv~~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~--~~i~GS~~g~--~~d~~e~l~f~~~g~Ikp~i~  309 (339)
T COG1064         234 IDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKE--ISIVGSLVGT--RADLEEALDFAAEGKIKPEIL  309 (339)
T ss_pred             EECCChhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcC--eEEEEEecCC--HHHHHHHHHHHHhCCceeeEE
Confidence            99999666666667777778888899885222111112222 233  5555444444  557777777766544334443


Q ss_pred             Ec
Q 022250          190 ES  191 (300)
Q Consensus       190 E~  191 (300)
                      |.
T Consensus       310 e~  311 (339)
T COG1064         310 ET  311 (339)
T ss_pred             ee
Confidence            33

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.46  E-value=0.099  Score=50.74  Aligned_cols=33  Identities=24%  Similarity=0.503  Sum_probs=25.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||+|+|+ |..|+.+++.+.. .++.=+-++|.
T Consensus       135 ~~~VlvvG~-GG~Gs~ia~~La~-~Gvg~i~lvD~  167 (376)
T PRK08762        135 EARVLLIGA-GGLGSPAALYLAA-AGVGTLGIVDH  167 (376)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            468999998 9999999998874 46654556774

>PLN00016 RNA-binding protein; Provisional

Probab=95.42  E-value=0.1  Score=50.30  Aligned_cols=95  Identities=18%  Similarity=0.155  Sum_probs=57.8

Q ss_pred             CcceEEEE----cCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhhcCcCCCCcce-ecCHHH---HHhc
Q 022250           34 SNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIPV-MSDLTM---VLGS  100 (300)
Q Consensus        34 ~~ikV~V~----Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~-----~~~~g~~~~~gv~v-~~dl~~---~l~~  100 (300)
                      |++||.|+    |++|.+|+.+++.+.+ .++++.++..........     ..+..+ ...++.+ ..|+.+   ++. 
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~~~~-  127 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSEL-SSAGVKTVWGDPADVKSKVA-  127 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHh-hhcCceEEEecHHHHHhhhc-
Confidence            46899999    9999999999999885 478988766432110000     000000 0123332 234543   442 


Q ss_pred             ccccCCccEEEEcCC--chhHHHHHHHHHHcCCC-EE
Q 022250          101 ISQSKARAVVIDFTD--ASTVYDNVKQATAFGMR-SV  134 (300)
Q Consensus       101 ~~~~~~~DVVIDfT~--p~~~~~~~~~al~~G~~-vV  134 (300)
                         ...+|+||++..  .+.....++.|.+.|+. +|
T Consensus       128 ---~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V  161 (378)
T PLN00016        128 ---GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL  161 (378)
T ss_pred             ---cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence               247999999864  33456667777788874 55

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=95.41  E-value=0.16  Score=43.57  Aligned_cols=86  Identities=22%  Similarity=0.261  Sum_probs=54.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcCC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (300)
                      ++.|+|+ |..|+.+++.+. +.+++++|.+|.+..  ..+.     .-.|+|++.+.+++...   ..+.+ +++....
T Consensus         1 ~~~I~Ga-g~~g~~~~~~l~-~~g~~vvgfid~~~~--~~~~-----~i~g~pvlg~~~~l~~~---~~~~~~~iiai~~   68 (201)
T TIGR03570         1 KLVIIGA-GGHGRVVADIAE-DSGWEIVGFLDDNPA--LQGT-----SVDGLPVLGGDEDLLRY---PPDEVDLVVAIGD   68 (201)
T ss_pred             CEEEEcC-CHHHHHHHHHHH-hCCCEEEEEEcCCcc--ccCc-----ccCCccEECCHHHHhhh---cccccEEEEEcCC
Confidence            5889998 999999999987 468999999996431  1111     12467777666554321   01233 4444445


Q ss_pred             chhHHHHHHHHHHcCCCEE
Q 022250          116 ASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vV  134 (300)
                      +....+....+.+.+.++.
T Consensus        69 ~~~~~~i~~~l~~~g~~~~   87 (201)
T TIGR03570        69 NKLRRRLFEKLKAKGYRFA   87 (201)
T ss_pred             HHHHHHHHHHHHhCCCcce
Confidence            5555666666666665443

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=95.41  E-value=0.18  Score=49.84  Aligned_cols=88  Identities=20%  Similarity=0.296  Sum_probs=60.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH---HHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~---~~l~~~~~~~~~DVV  110 (300)
                      -|+.|+|+ |..|+.+++.+.+++  +++++|.+|.+..  +..      ...|+|+..+.+   +++.    +.++|.|
T Consensus       126 ~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~--~~~------~i~g~pVlg~~~~l~~~i~----~~~id~V  192 (445)
T TIGR03025       126 RRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPS--DRV------EVAGLPVLGKLDDLVELVR----AHRVDEV  192 (445)
T ss_pred             CcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcc--ccc------ccCCCcccCCHHHHHHHHH----hCCCCEE
Confidence            57999997 999999999998765  5899999985421  111      234677775544   4444    3578877


Q ss_pred             EEcCC---chhHHHHHHHHHHcCCCEEEe
Q 022250          111 IDFTD---ASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       111 IDfT~---p~~~~~~~~~al~~G~~vVig  136 (300)
                      +-..+   ++...+.+..|.++|+++.+-
T Consensus       193 iIa~p~~~~~~~~~ll~~~~~~gv~V~~v  221 (445)
T TIGR03025       193 IIALPLSEEARILELLLQLRDLGVDVRLV  221 (445)
T ss_pred             EEecCcccHHHHHHHHHHHHhcCCEEEEe
Confidence            64432   223356788888999987764

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=95.35  E-value=0.16  Score=52.95  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=34.7

Q ss_pred             ceeeEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           22 KRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        22 ~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      ++---||.-+   ++||.|.|++|-+|+.+++.+.+..+++++++.
T Consensus       305 ~~~~~~~~~~---~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~  347 (660)
T PRK08125        305 NSKPACSAKR---RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD  347 (660)
T ss_pred             cccchhhhhc---CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence            4445566666   479999999999999999999866678999864

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.29  E-value=0.12  Score=45.81  Aligned_cols=121  Identities=13%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||.|+|+ |.+|..+++.+. ..++.=+-++|.+... .+... ++--....|-+-...+.+.+.    .-+||+-|+
T Consensus        21 ~s~VlIiG~-gglG~evak~La-~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~----~lNp~v~i~   94 (197)
T cd01492          21 SARILLIGL-KGLGAEIAKNLV-LSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLR----ALNPRVKVS   94 (197)
T ss_pred             hCcEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHH----HHCCCCEEE
Confidence            368999998 889999999987 4677767778854211 11110 000000011111111122222    235666555


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      +-..... +.... .-.+..+|+-++. +.+....+.++|++.++|++.+..
T Consensus        95 ~~~~~~~-~~~~~-~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~  143 (197)
T cd01492          95 VDTDDIS-EKPEE-FFSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGV  143 (197)
T ss_pred             EEecCcc-ccHHH-HHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEe
Confidence            4321111 11111 1235567766543 344556677777777777766543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.28  E-value=0.19  Score=46.01  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=26.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||+|+|+ |..|..+++.+.. .++.=..++|.
T Consensus        32 ~~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~   64 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAA-AGVGTLTLVDF   64 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence            468999998 9999999999875 46655556774

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.28  E-value=0.17  Score=46.75  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=54.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCc---CCCC--cceecCHHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME---QPLE--IPVMSDLTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~---~~~g--v~v~~dl~~~l~~~~~~~~~D  108 (300)
                      |||+|+|+ |.||..++..+.+ .+.++.. ++++.  .....+.  |..   ....  +...++.+++       .++|
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~-~g~~V~~-~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~d   68 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQ-AGHDVTL-VARRG--AHLDALNENGLRLEDGEITVPVLAADDPAEL-------GPQD   68 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCh--HHHHHHHHcCCcccCCceeecccCCCChhHc-------CCCC
Confidence            58999998 9999999998875 4667654 44321  1111110  110   0000  1123455443       3789


Q ss_pred             EEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCH
Q 022250          109 VVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~  142 (300)
                      +||-++.+..+.+.+.....   .+..+|+-..|+..
T Consensus        69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~  105 (304)
T PRK06522         69 LVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGH  105 (304)
T ss_pred             EEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence            99988876666665554433   34556665568763

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=95.27  E-value=0.093  Score=48.14  Aligned_cols=120  Identities=18%  Similarity=0.226  Sum_probs=76.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCcCCC-------------CcceecCHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL-------------EIPVMSDLTM   96 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~-------------gv~v~~dl~~   96 (300)
                      -.+|+|-|. |++|+..++.+.+ .+..++++.|.     ++.|.|..++.......             +...+++-++
T Consensus        32 g~~v~IqGf-G~VG~~~a~~l~~-~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  109 (244)
T PF00208_consen   32 GKRVAIQGF-GNVGSHAARFLAE-LGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE  109 (244)
T ss_dssp             TCEEEEEES-SHHHHHHHHHHHH-TTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-cCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence            378999998 9999999999886 49999999774     23355555443211011             1122222226


Q ss_pred             HHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250           97 VLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                      ++.     .++||+|=+..+... .+++...+++|..+|+|--  .++++..+    .-+++  .+++.|.|..
T Consensus       110 il~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~----~L~~r--GI~viPD~~a  172 (244)
T PF00208_consen  110 ILS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE----ILRER--GILVIPDFLA  172 (244)
T ss_dssp             GGT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH----HHHHT--T-EEE-HHHH
T ss_pred             ccc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH----HHHHC--CCEEEcchhh
Confidence            775     689999988866665 6677768899999999976  35665433    23444  4577777643

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.25  E-value=0.34  Score=47.66  Aligned_cols=140  Identities=20%  Similarity=0.187  Sum_probs=73.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCcCCCCccee--cCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVM--SDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .+|.|+|+ |++|..+++.+.+ .+.++++ +|.... ....+.. .+ .+.++.+.  +..++.+      ..+|+||-
T Consensus         6 k~v~iiG~-g~~G~~~A~~l~~-~G~~V~~-~d~~~~-~~~~~~~~~l-~~~~~~~~~~~~~~~~~------~~~d~vv~   74 (450)
T PRK14106          6 KKVLVVGA-GVSGLALAKFLKK-LGAKVIL-TDEKEE-DQLKEALEEL-GELGIELVLGEYPEEFL------EGVDLVVV   74 (450)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCch-HHHHHHHHHH-HhcCCEEEeCCcchhHh------hcCCEEEE
Confidence            68999998 8899999998874 6888764 565320 1111100 00 12344332  2233333      46899997


Q ss_pred             cCCchhHHHHHHHHHHcCCCE--------------EEeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRS--------------VVYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~v--------------VigTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a  176 (300)
                      .+......+.+..|.+.|+++              |||-||-+-.  -...|..+-+..+-++.+..|  +|+.+.....
T Consensus        75 ~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~--ig~~~~~~~~  152 (450)
T PRK14106         75 SPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN--IGYPLIDAVE  152 (450)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCc--ccHHHHHHHh
Confidence            665444455566666666654              4455543211  122344444444445566666  6665543221


Q ss_pred             HHhccCCCCeEEEEc
Q 022250          177 ISASFHYKNVEIVES  191 (300)
Q Consensus       177 ~~~~~~~~dieIiE~  191 (300)
                      . .  ...|+-++|.
T Consensus       153 ~-~--~~~~~~v~E~  164 (450)
T PRK14106        153 E-Y--GEDDIIVAEV  164 (450)
T ss_pred             c-C--CCCCEEEEEc
Confidence            1 1  1235556665

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.23  E-value=0.11  Score=47.53  Aligned_cols=94  Identities=19%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhh-----hhcCcCCCCccee---
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGM-----VCDMEQPLEIPVM---   91 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~~~-----~~g~~~~~gv~v~---   91 (300)
                      -+|.|+|. |.+|+-.++++.. .++.=.-++|.+                ..|+.--+     ...+.+...+...   
T Consensus        31 ~~V~VvGi-GGVGSw~veALaR-sGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          31 AHVCVVGI-GGVGSWAVEALAR-SGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             CcEEEEec-CchhHHHHHHHHH-cCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            46999998 9999999999885 455444455521                11211000     1111122222221   


Q ss_pred             ---cCHHHHHhcccccCCccEEEEcCC-chhHHHHHHHHHHcCCCEEEe
Q 022250           92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVig  136 (300)
                         +++++++.     .++|.|||+.. -.+-.+.+.+|.++++|+|..
T Consensus       109 ~t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss  152 (263)
T COG1179         109 ITEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISS  152 (263)
T ss_pred             hCHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEee
Confidence               46777875     58999999884 455577889999999999854

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.23  E-value=0.017  Score=50.31  Aligned_cols=30  Identities=37%  Similarity=0.533  Sum_probs=23.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ||+|+|+ |.||+.++..++.. ++++. .+|.
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~-G~~V~-l~d~   30 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARA-GYEVT-LYDR   30 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHT-TSEEE-EE-S
T ss_pred             CEEEEcC-CHHHHHHHHHHHhC-CCcEE-EEEC
Confidence            7999998 99999999988754 88866 4664

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=95.22  E-value=0.094  Score=52.27  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc----CCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd   68 (300)
                      +.||+|+|+ ||+||.+.+.+.+.    ++++|+++.+
T Consensus       127 ~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~  163 (477)
T PRK08289        127 PRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVV  163 (477)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEec
Confidence            589999998 99999999998766    5899999975

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.21  E-value=0.041  Score=46.05  Aligned_cols=125  Identities=16%  Similarity=0.139  Sum_probs=65.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCC---CC--cchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      |||+|+|++|.+|+.++-.+...+- -|| ..+|.+.   .|  .|....... ....+.+..+..+.+      .++|+
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei-~L~D~~~~~~~g~a~Dl~~~~~~-~~~~~~i~~~~~~~~------~~aDi   72 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEI-VLIDINEDKAEGEALDLSHASAP-LPSPVRITSGDYEAL------KDADI   72 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEE-EEEESSHHHHHHHHHHHHHHHHG-STEEEEEEESSGGGG------TTESE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCce-EEeccCcccceeeehhhhhhhhh-ccccccccccccccc------ccccE
Confidence            6999999999999999998876643 344 4677541   11  122221110 112233433334444      47899


Q ss_pred             EEEcCC-chh-HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022250          110 VIDFTD-AST-VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF  181 (300)
Q Consensus       110 VIDfT~-p~~-~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~  181 (300)
                      ||-... |.. -.+. ...++.+.+++       .+-.++|.+.+-+  .-+++.+|=   ++++..++++.++
T Consensus        73 vvitag~~~~~g~sR-~~ll~~N~~i~-------~~~~~~i~~~~p~--~~vivvtNP---vd~~t~~~~~~s~  133 (141)
T PF00056_consen   73 VVITAGVPRKPGMSR-LDLLEANAKIV-------KEIAKKIAKYAPD--AIVIVVTNP---VDVMTYVAQKYSG  133 (141)
T ss_dssp             EEETTSTSSSTTSSH-HHHHHHHHHHH-------HHHHHHHHHHSTT--SEEEE-SSS---HHHHHHHHHHHHT
T ss_pred             EEEeccccccccccH-HHHHHHhHhHH-------HHHHHHHHHhCCc--cEEEEeCCc---HHHHHHHHHHhhC
Confidence            885431 111 0011 11122222222       2344556666643  456666665   7787777777664

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.19  E-value=0.14  Score=46.54  Aligned_cols=121  Identities=17%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhc-CcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||+|+|+ |.+|..+++.+.. .++.=.-++|.+... .+...... .....|-+-.+-+.+-+.    +-+|++-|+
T Consensus        11 ~~~VlVvG~-GGvGs~va~~Lar-~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~----~inP~~~V~   84 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALAR-SGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR----DINPECEVD   84 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH----HHCCCcEEE
Confidence            468999998 9999999999875 455333456642110 01110000 000111111111112221    124454443


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEc
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a  162 (300)
                      .-.-....++....+..+.++|+.++.-.. ....|.++|.++++|++.+
T Consensus        85 ~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~-~k~~L~~~c~~~~ip~I~s  133 (231)
T cd00755          85 AVEEFLTPDNSEDLLGGDPDFVVDAIDSIR-AKVALIAYCRKRKIPVISS  133 (231)
T ss_pred             EeeeecCHhHHHHHhcCCCCEEEEcCCCHH-HHHHHHHHHHHhCCCEEEE
Confidence            322211223344444445677776654322 2345666777777776653

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02427 UDP-apiose/xylose synthase

Probab=95.19  E-value=0.14  Score=49.29  Aligned_cols=33  Identities=15%  Similarity=0.071  Sum_probs=28.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      +|||.|.|++|-+|+.+++.+.+..+.+++++.
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~   46 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALD   46 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence            479999999999999999999876568887753

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.14  E-value=0.11  Score=51.03  Aligned_cols=128  Identities=16%  Similarity=0.263  Sum_probs=68.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||.|+|+ |++|+.+++.+.+ .+.+++ ++|.+.  .....+.   ...++++.    .+.+.+.+.  .-.++|+||
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~-~g~~v~-vid~~~--~~~~~~~---~~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi   70 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSG-ENNDVT-VIDTDE--ERLRRLQ---DRLDVRTVVGNGSSPDVLREA--GAEDADLLI   70 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCcEE-EEECCH--HHHHHHH---hhcCEEEEEeCCCCHHHHHHc--CCCcCCEEE
Confidence            58999998 9999999998874 578877 566532  1122211   11233322    122222110  014689888


Q ss_pred             EcCCchhHH-HHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHHh--hhCCCeEEEcCCCcHHHHHHHHH
Q 022250          112 DFTDASTVY-DNVKQATAF-GMRSVVYVPHIQLETVSALSAFC--DKASMGCLIAPTLSIGSILLQQA  175 (300)
Q Consensus       112 DfT~p~~~~-~~~~~al~~-G~~vVigTTG~~~e~~~~L~~~a--~~~~i~iv~a~N~SiGv~ll~~~  175 (300)
                      -++..+... ..+..+.+. +.+-++..+.-.+ . .+..++.  ++.|+..+++|..-.+-.+...+
T Consensus        71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~~~-~-~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l  136 (453)
T PRK09496         71 AVTDSDETNMVACQIAKSLFGAPTTIARVRNPE-Y-AEYDKLFSKEALGIDLLISPELLVAREIARLI  136 (453)
T ss_pred             EecCChHHHHHHHHHHHHhcCCCeEEEEECCcc-c-cchhhhhhhhcCCccEEECHHHHHHHHHHHHh
Confidence            666544433 333455554 5554444332111 1 1223332  55677888888877776555443

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=95.13  E-value=0.11  Score=47.43  Aligned_cols=59  Identities=22%  Similarity=0.316  Sum_probs=39.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      ||.|+|++|.+|+.+++.+.+ .+.+++++. +..  -|            +.-.++++++++    ..++|+||++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~-~g~~v~~~~-r~~--~d------------~~~~~~~~~~~~----~~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSP-EGRVVVALT-SSQ--LD------------LTDPEALERLLR----AIRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHh-cCCEEEEeC-Ccc--cC------------CCCHHHHHHHHH----hCCCCEEEECCc
Confidence            689999999999999999885 578877643 221  01            111234556664    246799998764

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.13  E-value=0.25  Score=48.26  Aligned_cols=30  Identities=23%  Similarity=0.434  Sum_probs=23.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |||+|+|. |.||..++..++ . ++++++ +|.
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA-~-G~~Vig-vD~   30 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIA-Q-NHEVVA-LDI   30 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-h-CCcEEE-EEC
Confidence            48999997 999999997665 3 788765 664

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=95.13  E-value=0.11  Score=48.23  Aligned_cols=86  Identities=16%  Similarity=0.212  Sum_probs=50.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||.|.|++|-+|+.+++.+.+. + ++++ +++..  .   .+     ...+.-.+.++++++    ..++|+||.+..
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~--~---~~-----~~Dl~d~~~~~~~~~----~~~~D~Vih~Aa   63 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHS--T---DY-----CGDFSNPEGVAETVR----KIRPDVIVNAAA   63 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-ecccc--c---cc-----cCCCCCHHHHHHHHH----hcCCCEEEECCc
Confidence            48999999999999999988754 4 5544 44321  0   00     011111223445554    136899998742


Q ss_pred             ----------chh--------HHHHHHHHHHcCCCEEEeCC
Q 022250          116 ----------AST--------VYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       116 ----------p~~--------~~~~~~~al~~G~~vVigTT  138 (300)
                                |+.        ....++.|.++|+++|.-+|
T Consensus        64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss  104 (299)
T PRK09987         64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST  104 (299)
T ss_pred             cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence                      111        23455667777887775443

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.13  E-value=0.11  Score=49.78  Aligned_cols=64  Identities=17%  Similarity=0.110  Sum_probs=44.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++. ++|+..  .....     ...++. +.++++++.      .+|+|+-..
T Consensus       150 gktvgIiG~-G~IG~~vA~~l~~-~G~~V~-~~d~~~--~~~~~-----~~~~~~-~~~l~ell~------~aDiV~l~l  212 (333)
T PRK13243        150 GKTIGIIGF-GRIGQAVARRAKG-FGMRIL-YYSRTR--KPEAE-----KELGAE-YRPLEELLR------ESDFVSLHV  212 (333)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEE-EECCCC--ChhhH-----HHcCCE-ecCHHHHHh------hCCEEEEeC
Confidence            378999998 9999999998874 578876 567642  11110     122333 468999984      789998665


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       213 P  213 (333)
T PRK13243        213 P  213 (333)
T ss_pred             C
Confidence            4

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.12  E-value=0.11  Score=46.47  Aligned_cols=98  Identities=24%  Similarity=0.297  Sum_probs=64.3

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhc-CCcEEEEE--EecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCcc
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA--IDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARA  108 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~--vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~D  108 (300)
                      .++.||+|+|. |++|.-+.--++.+ ..+|.-+.  +|+..-|..  ..    .++|++.+ .-++-+|.. -...+.|
T Consensus         2 ~sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdgla--ra----arlgv~tt~egv~~ll~~-p~~~di~   73 (310)
T COG4569           2 SSKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLA--RA----ARLGVATTHEGVIGLLNM-PEFADID   73 (310)
T ss_pred             CCcceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHH--HH----HhcCCcchhhHHHHHHhC-CCCCCcc
Confidence            35789999995 99999865545544 44554443  454332211  11    24555544 345555541 0112345


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      .|.|.|+.-++.+++....+.|++.+-=||
T Consensus        74 lvfdatsa~~h~~~a~~~ae~gi~~idltp  103 (310)
T COG4569          74 LVFDATSAGAHVKNAAALAEAGIRLIDLTP  103 (310)
T ss_pred             eEEeccccchhhcchHhHHhcCCceeecch
Confidence            999999999999999999999999998776

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=95.08  E-value=0.29  Score=48.50  Aligned_cols=89  Identities=18%  Similarity=0.195  Sum_probs=56.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceec--CHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVV  110 (300)
                      +-|+.|+|+ |..|+.+++.+.+++  +++++|.+|.+..  ..+.     .-.|+|+..  ++.+.+.    +.++|.|
T Consensus       125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~--~~~~-----~i~g~pVlg~~~l~~~i~----~~~id~V  192 (456)
T TIGR03022       125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPA--ASGR-----LLTGLPVVGADDALRLYA----RTRYAYV  192 (456)
T ss_pred             CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCcc--cccc-----ccCCCcccChhHHHHHHH----hCCCCEE
Confidence            357999997 999999999987654  5899999985421  1111     123556654  3444443    2567865


Q ss_pred             EEcCC---chhHHHHHHHHHHcCC-CEEE
Q 022250          111 IDFTD---ASTVYDNVKQATAFGM-RSVV  135 (300)
Q Consensus       111 IDfT~---p~~~~~~~~~al~~G~-~vVi  135 (300)
                      +-..+   ++...+.+..|.+.++ ++.+
T Consensus       193 iIAip~~~~~~~~~ll~~l~~~~v~~V~~  221 (456)
T TIGR03022       193 IVAMPGTQAEDMARLVRKLGALHFRNVLI  221 (456)
T ss_pred             EEecCCccHHHHHHHHHHHHhCCCeEEEE
Confidence            53332   3445667778888888 5544

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=95.01  E-value=0.14  Score=47.17  Aligned_cols=124  Identities=19%  Similarity=0.228  Sum_probs=76.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-------cCHHHHHhcccccCC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-------SDLTMVLGSISQSKA  106 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-------~dl~~~l~~~~~~~~  106 (300)
                      ||++|.|.|.| .=|+.+++.+.+. +..++.-+.... |. .       ...++++.       +++.+.+.    +.+
T Consensus         1 ~~~~IlvlgGT-~egr~la~~L~~~-g~~v~~Svat~~-g~-~-------~~~~~~v~~G~l~~~~~l~~~l~----~~~   65 (248)
T PRK08057          1 MMPRILLLGGT-SEARALARALAAA-GVDIVLSLAGRT-GG-P-------ADLPGPVRVGGFGGAEGLAAYLR----EEG   65 (248)
T ss_pred             CCceEEEEech-HHHHHHHHHHHhC-CCeEEEEEccCC-CC-c-------ccCCceEEECCCCCHHHHHHHHH----HCC
Confidence            57889999986 5599999988754 666655443321 21 1       11222221       34555665    478


Q ss_pred             ccEEEEcCCchhH---HHHHHHHHHcCCCEE-EeCCCCCH---------HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHH
Q 022250          107 RAVVIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL---------ETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (300)
Q Consensus       107 ~DVVIDfT~p~~~---~~~~~~al~~G~~vV-igTTG~~~---------e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~  173 (300)
                      +++|||.|||=+.   ......|.+.|+|.+ ..=+.|..         +..+++.+++.+. -.+++    .+|++-+.
T Consensus        66 i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~-~~vll----ttGsk~l~  140 (248)
T PRK08057         66 IDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF-RRVLL----TTGRQPLA  140 (248)
T ss_pred             CCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc-CCEEE----ecCcchHH
Confidence            9999999998665   455678889999998 44333311         1233344444333 24565    78888776


Q ss_pred             HHHH
Q 022250          174 QAAI  177 (300)
Q Consensus       174 ~~a~  177 (300)
                      .+..
T Consensus       141 ~f~~  144 (248)
T PRK08057        141 HFAA  144 (248)
T ss_pred             HHhh
Confidence            6654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.01  E-value=0.3  Score=45.72  Aligned_cols=105  Identities=16%  Similarity=0.116  Sum_probs=58.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhhcCcCCCCcce--ecCH-HHHHhcccccCCccE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL-TMVLGSISQSKARAV  109 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL-vg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl-~~~l~~~~~~~~~DV  109 (300)
                      ++++|+|+|. |.||+.+++.+.+ .+... +-..|.........      ...|+.-  ..+. .+.+      ..+|+
T Consensus         2 ~~~~v~IvG~-GliG~s~a~~l~~-~g~~v~i~g~d~~~~~~~~a------~~lgv~d~~~~~~~~~~~------~~aD~   67 (279)
T COG0287           2 ASMKVGIVGL-GLMGGSLARALKE-AGLVVRIIGRDRSAATLKAA------LELGVIDELTVAGLAEAA------AEADL   67 (279)
T ss_pred             CCcEEEEECC-chHHHHHHHHHHH-cCCeEEEEeecCcHHHHHHH------hhcCcccccccchhhhhc------ccCCE
Confidence            4689999997 9999999999875 45543 22333321000111      1123221  1222 2222      46899


Q ss_pred             EEEcCCchhHHHHHHHHHH-cCCC-EEEeCCCCCHHHHHHHHHHh
Q 022250          110 VIDFTDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC  152 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~-~G~~-vVigTTG~~~e~~~~L~~~a  152 (300)
                      ||-.++..++.+.++.... .... +|+.+|..-..-.+.+.+..
T Consensus        68 VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~  112 (279)
T COG0287          68 VIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL  112 (279)
T ss_pred             EEEeccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence            9988888888888877663 3333 44444444333344444444

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.00  E-value=0.18  Score=44.80  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=26.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ..||+|+|+ |.||+.+++.+.. .++.=+-++|.+
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~-~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLAR-AGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEECCC
Confidence            468999999 9999999999875 566434467753

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=94.98  E-value=0.14  Score=47.43  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=27.3

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      |.|.|++|-+|+.+++.+.+ .+.+++.++|..
T Consensus         2 ilVtGa~GfiG~~l~~~L~~-~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALND-KGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHh-CCCceEEEecCC
Confidence            78999999999999999886 477788888754

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=94.94  E-value=0.23  Score=48.50  Aligned_cols=99  Identities=13%  Similarity=0.119  Sum_probs=61.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhhh----hcCc---------C-----CCCcceec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGMV----CDME---------Q-----PLEIPVMS   92 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g---~d~~~~----~g~~---------~-----~~gv~v~~   92 (300)
                      |.||+|.|+||-+|+..++.+.+.|+ +++++........   +.+.++    +.+.         .     ..++.++.
T Consensus         1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~   80 (389)
T TIGR00243         1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV   80 (389)
T ss_pred             CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence            36899999999999999999887765 9999987632110   000000    0000         0     00133432


Q ss_pred             ---CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250           93 ---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus        93 ---dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                         .+.++.+    ..++|+|+-...--+-..-...|+++|+.+-...
T Consensus        81 G~~~l~~l~~----~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN  124 (389)
T TIGR00243        81 GEEGICEMAA----LEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALAN  124 (389)
T ss_pred             CHHHHHHHHc----CCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec
Confidence               2333332    3467888877766666777778889988877653

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.94  E-value=0.15  Score=48.73  Aligned_cols=32  Identities=25%  Similarity=0.285  Sum_probs=26.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      -||+|+|+ |-||+.++..++. .+++++ ++|..
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~-aG~~V~-l~D~~   39 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALA-HGLDVV-AWDPA   39 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCC
Confidence            57999998 9999999998874 688877 47753

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=94.90  E-value=0.13  Score=42.68  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=28.7

Q ss_pred             EEEEcCCchHHHHHHHHHHhcC-CcEEEEEEec
Q 022250           38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS   69 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~   69 (300)
                      |+|.|+||-+|+...+.+.+.| .+++++....
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~   33 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG   33 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence            6899999999999999999888 5999998774

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK06141 ornithine cyclodeaminase; Validated

Probab=94.90  E-value=0.04  Score=52.21  Aligned_cols=88  Identities=10%  Similarity=0.074  Sum_probs=54.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .+|+|+|+ |.||+.+++.+....+.+=+-+++++.  ..+..++..-...+  +.+.+++++++.      ++|+||-.
T Consensus       126 ~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~--~~a~~~a~~~~~~g~~~~~~~~~~~av~------~aDIVi~a  196 (314)
T PRK06141        126 SRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDP--AKAEALAAELRAQGFDAEVVTDLEAAVR------QADIISCA  196 (314)
T ss_pred             ceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHhcCCceEEeCCHHHHHh------cCCEEEEe
Confidence            68999997 999999998776644555555677643  22233331101113  556788888884      79999876


Q ss_pred             CCchhHHHHH-HHHHHcCCCEE
Q 022250          114 TDASTVYDNV-KQATAFGMRSV  134 (300)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV  134 (300)
                      |+..  ...+ ...++.|.++.
T Consensus       197 T~s~--~pvl~~~~l~~g~~i~  216 (314)
T PRK06141        197 TLST--EPLVRGEWLKPGTHLD  216 (314)
T ss_pred             eCCC--CCEecHHHcCCCCEEE
Confidence            6433  1211 24567787554

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.89  E-value=0.11  Score=48.23  Aligned_cols=127  Identities=17%  Similarity=0.141  Sum_probs=64.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC-cceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ..+|.|+|+ |++|+.++..+... ++.=+-+++++.  +.+..++..-.... +.+..+..+.+      .++|+||..
T Consensus       123 ~k~vlVlGa-Gg~a~ai~~aL~~~-g~~~V~v~~R~~--~~a~~l~~~~~~~~~~~~~~~~~~~~------~~~DivIna  192 (278)
T PRK00258        123 GKRILILGA-GGAARAVILPLLDL-GVAEITIVNRTV--ERAEELAKLFGALGKAELDLELQEEL------ADFDLIINA  192 (278)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEEeCCH--HHHHHHHHHhhhccceeecccchhcc------ccCCEEEEC
Confidence            358999997 99999999998854 533344566542  22222221000111 22211333444      478999988


Q ss_pred             CCchhHH-----HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          114 TDASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       114 T~p~~~~-----~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      |+.....     +....++..+ .+|+-. -+++.. -.|.+.|++.|.+++-    .+++ |+.|++.++
T Consensus       193 Tp~g~~~~~~~~~~~~~~l~~~-~~v~Di-vY~P~~-T~ll~~A~~~G~~~~~----G~~M-l~~Qa~~~f  255 (278)
T PRK00258        193 TSAGMSGELPLPPLPLSLLRPG-TIVYDM-IYGPLP-TPFLAWAKAQGARTID----GLGM-LVHQAAEAF  255 (278)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCC-CEEEEe-ecCCCC-CHHHHHHHHCcCeecC----CHHH-HHHHHHHHH
Confidence            8533211     1112334443 333321 122211 2477778888887653    3332 345555554

>PRK07340 ornithine cyclodeaminase; Validated

Probab=94.86  E-value=0.053  Score=51.17  Aligned_cols=90  Identities=18%  Similarity=0.136  Sum_probs=58.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .+|+|+|+ |.||+.+++++....+.+-+.+++++.  ..+..++..-...++.+ ++++++++.      ++|+||-+|
T Consensus       126 ~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~--~~a~~~a~~~~~~~~~~~~~~~~~av~------~aDiVitaT  196 (304)
T PRK07340        126 GDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTA--ASAAAFCAHARALGPTAEPLDGEAIPE------AVDLVVTAT  196 (304)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCCeeEECCHHHHhh------cCCEEEEcc
Confidence            68999997 999999999997656667778888753  22222221001123333 578888884      899999877


Q ss_pred             C-chhHHHHHHHHHHcCCCEE-EeC
Q 022250          115 D-ASTVYDNVKQATAFGMRSV-VYV  137 (300)
Q Consensus       115 ~-p~~~~~~~~~al~~G~~vV-igT  137 (300)
                      + ++.+.+   ..++-|.++. ||+
T Consensus       197 ~s~~Pl~~---~~~~~g~hi~~iGs  218 (304)
T PRK07340        197 TSRTPVYP---EAARAGRLVVAVGA  218 (304)
T ss_pred             CCCCceeC---ccCCCCCEEEecCC
Confidence            5 333332   2367888777 554

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.84  E-value=0.14  Score=48.94  Aligned_cols=149  Identities=12%  Similarity=0.125  Sum_probs=82.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|+|+|. |.||+.+++.+. .-++++++..++.   .... .+   ...|..+ .+++++++      .+|+|+-..+
T Consensus        17 KtVGIIG~-GsIG~amA~nL~-d~G~~ViV~~r~~---~s~~-~A---~~~G~~v-~sl~Eaak------~ADVV~llLP   80 (335)
T PRK13403         17 KTVAVIGY-GSQGHAQAQNLR-DSGVEVVVGVRPG---KSFE-VA---KADGFEV-MSVSEAVR------TAQVVQMLLP   80 (335)
T ss_pred             CEEEEEeE-cHHHHHHHHHHH-HCcCEEEEEECcc---hhhH-HH---HHcCCEE-CCHHHHHh------cCCEEEEeCC
Confidence            67999998 999999999887 5689988655432   2111 11   1234443 38999984      7899886554


Q ss_pred             chhHHHHHH-HHHHc-CC-CEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEcc
Q 022250          116 ASTVYDNVK-QATAF-GM-RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESR  192 (300)
Q Consensus       116 p~~~~~~~~-~al~~-G~-~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~H  192 (300)
                      -+.....+. ..+.+ .. .+++=.-||+- ....|   ---.++-++..+-=+.|-.+=..+.+-..  -+..  +=.|
T Consensus        81 d~~t~~V~~~eil~~MK~GaiL~f~hgfni-~~~~i---~pp~~vdv~mvaPKgpG~~vR~~y~~G~G--vp~l--~av~  152 (335)
T PRK13403         81 DEQQAHVYKAEVEENLREGQMLLFSHGFNI-HFGQI---NPPSYVDVAMVAPKSPGHLVRRVFQEGNG--VPAL--VAVH  152 (335)
T ss_pred             ChHHHHHHHHHHHhcCCCCCEEEECCCcce-ecCce---eCCCCCeEEEECCCCCChHHHHHHHcCCC--ceeE--EEEE
Confidence            333333332 12222 11 23444457764 22222   11233566655555667544333332111  1211  2223


Q ss_pred             CCCCCCCchHHHHHHHHHHh
Q 022250          193 PNARDFPSPDATQIANNLSN  212 (300)
Q Consensus       193 h~K~DaPSGTA~~l~~~i~~  212 (300)
                      +   | +||.|..+|-+.+.
T Consensus       153 q---d-~sg~a~~~ala~a~  168 (335)
T PRK13403        153 Q---D-ATGTALHVALAYAK  168 (335)
T ss_pred             E---C-CCCcHHHHHHHHHH
Confidence            2   5 89999999988876

>PRK05865 hypothetical protein; Provisional

Probab=94.83  E-value=0.21  Score=53.57  Aligned_cols=110  Identities=14%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc-CCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++.....  .....  +.. -...+.-.+++++++      .++|+||.+.
T Consensus         1 MkILVTGATGfIGs~La~~Ll~-~G~~Vv~l~R~~~--~~~~~--~v~~v~gDL~D~~~l~~al------~~vD~VVHlA   69 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLS-QGHEVVGIARHRP--DSWPS--SADFIAADIRDATAVESAM------TGADVVAHCA   69 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEECCch--hhccc--CceEEEeeCCCHHHHHHHH------hCCCEEEECC
Confidence            4899999999999999998875 5788877543211  00000  000 000111112344555      3689999986


Q ss_pred             Cc---------hhHHHHHHHHHHcCC-CEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250          115 DA---------STVYDNVKQATAFGM-RSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       115 ~p---------~~~~~~~~~al~~G~-~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      ..         ......++.|.++|+ .+|.-++.. .   ...++++++.+++++
T Consensus        70 a~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-K---~aaE~ll~~~gl~~v  121 (854)
T PRK05865         70 WVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH-Q---PRVEQMLADCGLEWV  121 (854)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-H---HHHHHHHHHcCCCEE
Confidence            32         223445667777776 444333322 2   233444555565443

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.80  E-value=0.18  Score=51.12  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      -||+|+|+ |.||+.++..+.. .+++++ ++|.+
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la~-aG~~V~-l~D~~   39 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAAQ-AGHTVL-LYDAR   39 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEeCC
Confidence            57999998 9999999998774 588876 57753

>PRK06436 glycerate dehydrogenase; Provisional

Probab=94.77  E-value=0.18  Score=47.65  Aligned_cols=59  Identities=19%  Similarity=0.170  Sum_probs=41.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      -.+|+|+|. |+||+.+++.+. .-++++++ +|+..  .+          .++ ..+.++++++.      .+|+|+-.
T Consensus       122 gktvgIiG~-G~IG~~vA~~l~-afG~~V~~-~~r~~--~~----------~~~~~~~~~l~ell~------~aDiv~~~  180 (303)
T PRK06436        122 NKSLGILGY-GGIGRRVALLAK-AFGMNIYA-YTRSY--VN----------DGISSIYMEPEDIMK------KSDFVLIS  180 (303)
T ss_pred             CCEEEEECc-CHHHHHHHHHHH-HCCCEEEE-ECCCC--cc----------cCcccccCCHHHHHh------hCCEEEEC
Confidence            378999997 999999999765 45888875 56432  11          112 12568999984      78999855


Q ss_pred             C
Q 022250          114 T  114 (300)
Q Consensus       114 T  114 (300)
                      .
T Consensus       181 l  181 (303)
T PRK06436        181 L  181 (303)
T ss_pred             C
Confidence            4

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.72  E-value=0.095  Score=45.38  Aligned_cols=64  Identities=25%  Similarity=0.236  Sum_probs=42.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |++|+.+++.+. .=++++++ +|+..  .+....    ...++ -+.++++++.      .+|+|+-..
T Consensus        36 g~tvgIiG~-G~IG~~vA~~l~-~fG~~V~~-~d~~~--~~~~~~----~~~~~-~~~~l~ell~------~aDiv~~~~   99 (178)
T PF02826_consen   36 GKTVGIIGY-GRIGRAVARRLK-AFGMRVIG-YDRSP--KPEEGA----DEFGV-EYVSLDELLA------QADIVSLHL   99 (178)
T ss_dssp             TSEEEEEST-SHHHHHHHHHHH-HTT-EEEE-EESSC--HHHHHH----HHTTE-EESSHHHHHH------H-SEEEE-S
T ss_pred             CCEEEEEEE-cCCcCeEeeeee-cCCceeEE-ecccC--Chhhhc----ccccc-eeeehhhhcc------hhhhhhhhh
Confidence            478999998 999999999887 45888775 66543  111101    12233 3579999995      689988554

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=94.70  E-value=0.063  Score=51.50  Aligned_cols=75  Identities=11%  Similarity=0.089  Sum_probs=52.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|. |.||+.+++.+.. .+..|.. .|++.. .++.      ..+|...|+++.++..     ..+|||+-+|
T Consensus        52 tl~IaIIGf-GnmGqflAetli~-aGh~li~-hsRsdy-ssaa------~~yg~~~ft~lhdlce-----rhpDvvLlct  116 (480)
T KOG2380|consen   52 TLVIAIIGF-GNMGQFLAETLID-AGHGLIC-HSRSDY-SSAA------EKYGSAKFTLLHDLCE-----RHPDVVLLCT  116 (480)
T ss_pred             ceEEEEEec-CcHHHHHHHHHHh-cCceeEe-cCcchh-HHHH------HHhcccccccHHHHHh-----cCCCEEEEEe
Confidence            489999998 9999999999874 5766654 343221 2222      3567777888888775     5899999888


Q ss_pred             CchhHHHHHH
Q 022250          115 DASTVYDNVK  124 (300)
Q Consensus       115 ~p~~~~~~~~  124 (300)
                      ........+.
T Consensus       117 silsiekila  126 (480)
T KOG2380|consen  117 SILSIEKILA  126 (480)
T ss_pred             hhhhHHHHHH
Confidence            6655555444

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=94.67  E-value=0.069  Score=50.84  Aligned_cols=88  Identities=18%  Similarity=0.132  Sum_probs=58.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-cCCCCc--ceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~gv--~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .+++|+|+ |.+|+.+++.+....+++-+.+++++.  ..+..++.. ...+++  ..++++++++.      ++|+||-
T Consensus       130 ~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~--~~a~~~a~~~~~~~g~~v~~~~~~~~av~------~aDiVvt  200 (326)
T TIGR02992       130 SVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDS--AKAEALALQLSSLLGIDVTAATDPRAAMS------GADIIVT  200 (326)
T ss_pred             cEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHhc------cCCEEEE
Confidence            58999998 999999999997667788788888753  222223210 012243  34688999884      7999997


Q ss_pred             cCCchhHHHHH-HHHHHcCCCEE
Q 022250          113 FTDASTVYDNV-KQATAFGMRSV  134 (300)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vV  134 (300)
                      +|+...  ..+ ...++.|.++.
T Consensus       201 aT~s~~--p~i~~~~l~~g~~i~  221 (326)
T TIGR02992       201 TTPSET--PILHAEWLEPGQHVT  221 (326)
T ss_pred             ecCCCC--cEecHHHcCCCcEEE
Confidence            774322  222 24567787766

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=94.66  E-value=0.32  Score=46.49  Aligned_cols=96  Identities=15%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhhcCcCC-----CCcceecCHHHHHhcccccC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQP-----LEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---~~~~~g~~~~-----~gv~v~~dl~~~l~~~~~~~  105 (300)
                      ++++|.|.|++|-+|+.+++.+++ .|+++.|-+..+..-+.   +..+-+....     ..+.-+++++++++      
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~-rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------   77 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLS-RGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------   77 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHh-CCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence            468999999999999999999884 79999998875421011   1111111111     12333567888884      


Q ss_pred             CccEEEEcCCc-----------------hhHHHHHHHHHHcC--CCEEEe
Q 022250          106 ARAVVIDFTDA-----------------STVYDNVKQATAFG--MRSVVY  136 (300)
Q Consensus       106 ~~DVVIDfT~p-----------------~~~~~~~~~al~~G--~~vVig  136 (300)
                      .+|.|+....|                 ..+...++.|.+..  +++|.-
T Consensus        78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~T  127 (327)
T KOG1502|consen   78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYT  127 (327)
T ss_pred             CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEe
Confidence            79999876543                 13456778888888  777754

>PRK14851 hypothetical protein; Provisional

Probab=94.65  E-value=0.12  Score=54.18  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=24.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ..||+|+|+ |.+|..+++.+.. .++.=.-++|
T Consensus        43 ~~~VlIvG~-GGlGs~va~~Lar-~GVG~l~LvD   74 (679)
T PRK14851         43 EAKVAIPGM-GGVGGVHLITMVR-TGIGRFHIAD   74 (679)
T ss_pred             cCeEEEECc-CHHHHHHHHHHHH-hCCCeEEEEc
Confidence            478999998 9999999998875 3543333455

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.63  E-value=0.23  Score=48.00  Aligned_cols=98  Identities=19%  Similarity=0.260  Sum_probs=59.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhhcCcCCCCccee--
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVM--   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g~-------d~~---------~~~g~~~~~gv~v~--   91 (300)
                      ..||.|+|+ |.+|..+++.+. ..++.=+.++|.+.     .++       |++         .+.-+.+...+..+  
T Consensus        28 ~~~VlivG~-GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~  105 (355)
T PRK05597         28 DAKVAVIGA-GGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR  105 (355)
T ss_pred             CCeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence            478999999 999999999887 45666666777421     111       111         00011011122222  


Q ss_pred             ----cCHHHHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-CC
Q 022250           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI  140 (300)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G~  140 (300)
                          ++..+++      .++|+|||++..-.. .-.-..|.++++|+|.|-. ||
T Consensus       106 ~i~~~~~~~~~------~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~  154 (355)
T PRK05597        106 RLTWSNALDEL------RDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGF  154 (355)
T ss_pred             ecCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence                1234455      479999999854333 4455789999999998753 54

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=94.63  E-value=0.26  Score=47.14  Aligned_cols=64  Identities=23%  Similarity=0.217  Sum_probs=45.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -..|||+|+ |++|+.+++.++. =++++++ +|+.. .++..      ...++.-.++++++++      .+|+|+-.+
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~a-fgm~v~~-~d~~~-~~~~~------~~~~~~~~~~Ld~lL~------~sDiv~lh~  205 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKA-FGMKVIG-YDPYS-PRERA------GVDGVVGVDSLDELLA------EADILTLHL  205 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCeEEE-ECCCC-chhhh------ccccceecccHHHHHh------hCCEEEEcC
Confidence            368999998 9999999998774 5898886 66521 12211      1234444678999995      789988554

>PRK07877 hypothetical protein; Provisional

Probab=94.61  E-value=0.19  Score=52.95  Aligned_cols=94  Identities=17%  Similarity=0.308  Sum_probs=57.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecC-----CCCc------chh---------hhhcCcCCCCccee-
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSH-----SVGE------DIG---------MVCDMEQPLEIPVM-   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~-----~~g~------d~~---------~~~g~~~~~gv~v~-   91 (300)
                      ..||+|+|+ | +|..++..+.. .++  +|. ++|.+     +..+      |++         .+..+.....|..+ 
T Consensus       107 ~~~V~IvG~-G-lGs~~a~~Lar-aGvvG~l~-lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~  182 (722)
T PRK07877        107 RLRIGVVGL-S-VGHAIAHTLAA-EGLCGELR-LADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT  182 (722)
T ss_pred             cCCEEEEEe-c-HHHHHHHHHHH-ccCCCeEE-EEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence            468999999 8 99999998874 353  333 44521     1111      111         01111122233332 


Q ss_pred             -----cCHHHHHhcccccCCccEEEEcCCc-hhHHHHHHHHHHcCCCEEEeCC
Q 022250           92 -----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus        92 -----~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTT  138 (300)
                           +++++++      .++|+|||++.. ++-...-..|.++|+|+|.++.
T Consensus       183 ~~i~~~n~~~~l------~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~  229 (722)
T PRK07877        183 DGLTEDNVDAFL------DGLDVVVEECDSLDVKVLLREAARARRIPVLMATS  229 (722)
T ss_pred             ccCCHHHHHHHh------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence                 2566676      378999999854 4435555789999999999874

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.59  E-value=0.18  Score=50.01  Aligned_cols=101  Identities=14%  Similarity=0.125  Sum_probs=56.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      --+|+|+|+ |.+|+.+++.+.. -+++++ ++|.+..  ...+ +   ...|..+ .++++++      ..+|+||++|
T Consensus       212 Gk~VlViG~-G~IG~~vA~~lr~-~Ga~Vi-V~d~dp~--ra~~-A---~~~G~~v-~~l~eal------~~aDVVI~aT  275 (425)
T PRK05476        212 GKVVVVAGY-GDVGKGCAQRLRG-LGARVI-VTEVDPI--CALQ-A---AMDGFRV-MTMEEAA------ELGDIFVTAT  275 (425)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCCch--hhHH-H---HhcCCEe-cCHHHHH------hCCCEEEECC
Confidence            368999998 9999999998875 477744 4554321  1111 1   1123333 3577777      3789999988


Q ss_pred             CchhHHH-HHHHHHHcCCCEEEeCCCCCH-HHHHHHHHHh
Q 022250          115 DASTVYD-NVKQATAFGMRSVVYVPHIQL-ETVSALSAFC  152 (300)
Q Consensus       115 ~p~~~~~-~~~~al~~G~~vVigTTG~~~-e~~~~L~~~a  152 (300)
                      ......+ .....++.|.-++.. ..++. -+.+.|.+.+
T Consensus       276 G~~~vI~~~~~~~mK~GailiNv-G~~d~Eid~~~L~~~~  314 (425)
T PRK05476        276 GNKDVITAEHMEAMKDGAILANI-GHFDNEIDVAALEELA  314 (425)
T ss_pred             CCHHHHHHHHHhcCCCCCEEEEc-CCCCCccChHHHhhcC
Confidence            5443333 334444555433332 22222 2344555543

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.56  E-value=0.92  Score=44.74  Aligned_cols=135  Identities=15%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCccee-c--CHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-S--DLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~--dl~~~l~~~~~~~~~DVV  110 (300)
                      +.||.|+|. |+.|...++.+....+ +++. +.|.... ....+.+   .. |+.++ .  +. +.+      .++|+|
T Consensus         7 ~~~v~viG~-G~sG~s~~~~l~~~~~~~~v~-~~D~~~~-~~~~~~l---~~-g~~~~~g~~~~-~~~------~~~d~v   72 (438)
T PRK04663          7 IKNVVVVGL-GITGLSVVKHLRKYQPQLTVK-VIDTRET-PPGQEQL---PE-DVELHSGGWNL-EWL------LEADLV   72 (438)
T ss_pred             CceEEEEec-cHHHHHHHHHHHhcCCCCeEE-EEeCCCC-chhHHHh---hc-CCEEEeCCCCh-HHh------ccCCEE
Confidence            357999998 9999999999887665 7766 4774321 1111111   12 66553 2  33 334      368977


Q ss_pred             EEcCC-chhHHHHHHHHHHcCCCEE--------------EeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHHHHHHH
Q 022250          111 IDFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (300)
Q Consensus       111 IDfT~-p~~~~~~~~~al~~G~~vV--------------igTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~  173 (300)
                      |--+. |. ..+.+..|.++|+|++              |+-||-+-.  -...|..+-++.+....+..|+  |+.++.
T Consensus        73 V~SpgI~~-~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni--G~~~~~  149 (438)
T PRK04663         73 VTNPGIAL-ATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI--GVPALD  149 (438)
T ss_pred             EECCCCCC-CCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc--CHHHHh
Confidence            74331 33 2344556666666654              444543211  1223444455556566677784  555432


Q ss_pred             HHHHHhccCCCCeEEEEc
Q 022250          174 QAAISASFHYKNVEIVES  191 (300)
Q Consensus       174 ~~a~~~~~~~~dieIiE~  191 (300)
                      .    +.. ..|+-|+|.
T Consensus       150 ~----~~~-~~~~~V~E~  162 (438)
T PRK04663        150 L----LEQ-DAELYVLEL  162 (438)
T ss_pred             h----hcC-CCCEEEEEc
Confidence            1    111 235566665

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.55  E-value=0.2  Score=47.11  Aligned_cols=124  Identities=15%  Similarity=0.197  Sum_probs=72.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||.|+|+ |.+|..+++.+. ..++.=+.++|.+..- .|.+. +.-.....|-+-.....+-+.    +.+++|-|+
T Consensus        19 ~s~VLIvG~-gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~----eLNp~V~V~   92 (286)
T cd01491          19 KSNVLISGL-GGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLA----ELNPYVPVT   92 (286)
T ss_pred             cCcEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHH----HHCCCCEEE
Confidence            468999998 999999999987 4677777788854310 11111 000000001111111112222    246787776


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      ........+.+     .+..+|+-|+. +.+....|.++|+++++|++++.-..+...
T Consensus        93 ~~~~~~~~~~l-----~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G~~G~  144 (286)
T cd01491          93 VSTGPLTTDEL-----LKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRGLFGS  144 (286)
T ss_pred             EEeccCCHHHH-----hcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccccEEE
Confidence            54333222322     24567777654 666777899999999999998776555433

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.54  E-value=0.47  Score=42.71  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=28.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ++||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R   49 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVR   49 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEec
Confidence            57999999999999999999875 4788877654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.54  E-value=0.29  Score=45.55  Aligned_cols=121  Identities=15%  Similarity=0.202  Sum_probs=63.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhhh-cCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..+|+|+|+ |.+|..+++.+.. .++.=+-++|.+.. -.+..... ......|-+-.+-+.+-+.    +-+|++-|.
T Consensus        30 ~s~VlVvG~-GGVGs~vae~Lar-~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~----~INP~~~V~  103 (268)
T PRK15116         30 DAHICVVGI-GGVGSWAAEALAR-TGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIR----QINPECRVT  103 (268)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHH----hHCCCcEEE
Confidence            468999998 9999999999875 45433446664311 01111100 0000111111111222222    135565443


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEc
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a  162 (300)
                      .-......++....+..+..+||-+.+-- .....|.++|+++++|++.+
T Consensus       104 ~i~~~i~~e~~~~ll~~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~  152 (268)
T PRK15116        104 VVDDFITPDNVAEYMSAGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTT  152 (268)
T ss_pred             EEecccChhhHHHHhcCCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence            21111113344444556788998877632 33456888999999998864

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.53  E-value=0.18  Score=51.28  Aligned_cols=89  Identities=13%  Similarity=0.193  Sum_probs=62.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecC--HHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVVID  112 (300)
                      ..|+.|+|+ |.-|..+++.+...+.+..||++|.+.      ...|. .-.|++++..  +.++++    +...+-++.
T Consensus       116 ~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~------~~~g~-~i~Gv~V~g~~~i~~~v~----~~~~~~iii  183 (588)
T COG1086         116 RIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDP------DLTGM-KIRGVPVLGRIEIERVVE----ELGIQLILI  183 (588)
T ss_pred             CCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCCh------hhcCC-EEeceeeechhHHHHHHH----HcCCceEEE
Confidence            588999998 999999999999999999999999653      12222 2347788743  555555    356664443


Q ss_pred             cC---CchhHHHHHHHHHHcCCCEEE
Q 022250          113 FT---DASTVYDNVKQATAFGMRSVV  135 (300)
Q Consensus       113 fT---~p~~~~~~~~~al~~G~~vVi  135 (300)
                      +-   .++...+.++.|-+.|+.+=+
T Consensus       184 Aips~~~~~~~~i~~~l~~~~~~v~~  209 (588)
T COG1086         184 AIPSASQEERRRILLRLARTGIAVRI  209 (588)
T ss_pred             ecCCCCHHHHHHHHHHHHhcCCcEEe
Confidence            32   355567778888888865543

>PRK05086 malate dehydrogenase; Provisional

Probab=94.52  E-value=0.36  Score=45.74  Aligned_cols=71  Identities=21%  Similarity=0.178  Sum_probs=40.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHh-cCCcEEEEEEecCCCCc-chhhhhcCcCCCCcce----ecCHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGE-DIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~-d~~~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~~DV  109 (300)
                      |||+|+|++|++|+.++..+.. .+....+..+|.+.... .+-++..  .+....+    .+|+.+.+      .++|+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~--~~~~~~i~~~~~~d~~~~l------~~~Di   72 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSH--IPTAVKIKGFSGEDPTPAL------EGADV   72 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhc--CCCCceEEEeCCCCHHHHc------CCCCE
Confidence            6999999999999999988754 33334445566432110 0011111  0111222    24655666      37999


Q ss_pred             EEEcC
Q 022250          110 VIDFT  114 (300)
Q Consensus       110 VIDfT  114 (300)
                      ||.+.
T Consensus        73 VIita   77 (312)
T PRK05086         73 VLISA   77 (312)
T ss_pred             EEEcC
Confidence            99764

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=94.51  E-value=0.24  Score=47.26  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=26.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC------CcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLvg~vd~   69 (300)
                      ++||+|+|++|.+|+.++..+...+      +.+|+. +|.
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~   41 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDI   41 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEc
Confidence            4899999999999999999887643      236765 564

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.45  E-value=0.89  Score=44.64  Aligned_cols=138  Identities=17%  Similarity=0.161  Sum_probs=73.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVI  111 (300)
                      .+|.|+|+ |++|...++.+. ..+.++++ .|....  .....++    .+.|+.++  .+..++++     ..+|+||
T Consensus         6 k~v~v~G~-g~~G~s~a~~l~-~~G~~V~~-~d~~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~~-----~~~d~vV   73 (447)
T PRK02472          6 KKVLVLGL-AKSGYAAAKLLH-KLGANVTV-NDGKPFSENPEAQEL----LEEGIKVICGSHPLELLD-----EDFDLMV   73 (447)
T ss_pred             CEEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCCccchhHHHHH----HhcCCEEEeCCCCHHHhc-----CcCCEEE
Confidence            47999998 889999988776 56888766 464321  0111222    23455554  33444442     2489887


Q ss_pred             EcCC-chhHHHHHHHHHHcCCCEE--------------EeCCCCCH--HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHH
Q 022250          112 DFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (300)
Q Consensus       112 DfT~-p~~~~~~~~~al~~G~~vV--------------igTTG~~~--e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~  174 (300)
                      --.. |. ....+..|.+.|+|++              |+-||-+-  --...|..+-+..+.......|  +|..+.. 
T Consensus        74 ~s~gi~~-~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gn--ig~p~~~-  149 (447)
T PRK02472         74 KNPGIPY-TNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGN--IGYPASE-  149 (447)
T ss_pred             ECCCCCC-CCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcc--cChhhHH-
Confidence            5331 22 2355667777777765              44454321  1122344444555555566677  4544332 


Q ss_pred             HHHHhccCCCCeEEEEc
Q 022250          175 AAISASFHYKNVEIVES  191 (300)
Q Consensus       175 ~a~~~~~~~~dieIiE~  191 (300)
                      +.....  ..|+-|+|.
T Consensus       150 ~~~~~~--~~~~~V~E~  164 (447)
T PRK02472        150 VAQKAT--ADDTLVMEL  164 (447)
T ss_pred             HHhcCC--CCCEEEEEc
Confidence            111111  235666676

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.43  E-value=0.5  Score=36.79  Aligned_cols=83  Identities=22%  Similarity=0.295  Sum_probs=50.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC-
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD-  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~-  115 (300)
                      +|+|+|+--++-..+-+.+.+ -+.++.-. .++. |.. .            -...++..+      .++|+||-+|. 
T Consensus         1 ~vliVGG~~~~~~~~~~~~~~-~G~~~~~h-g~~~-~~~-~------------~~~~l~~~i------~~aD~VIv~t~~   58 (97)
T PF10087_consen    1 SVLIVGGREDRERRYKRILEK-YGGKLIHH-GRDG-GDE-K------------KASRLPSKI------KKADLVIVFTDY   58 (97)
T ss_pred             CEEEEcCCcccHHHHHHHHHH-cCCEEEEE-ecCC-CCc-c------------chhHHHHhc------CCCCEEEEEeCC
Confidence            589999433887777776664 67887765 2211 000 0            001244555      47899888774 


Q ss_pred             --chhHHHHHHHHHHcCCCEEEeC-CCCC
Q 022250          116 --ASTVYDNVKQATAFGMRSVVYV-PHIQ  141 (300)
Q Consensus       116 --p~~~~~~~~~al~~G~~vVigT-TG~~  141 (300)
                        .+.....-..|.+.++|++... +|++
T Consensus        59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~   87 (97)
T PF10087_consen   59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS   87 (97)
T ss_pred             cChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence              4445556667777788888766 4665

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.42  E-value=1.1  Score=44.74  Aligned_cols=118  Identities=14%  Similarity=0.193  Sum_probs=64.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec--CHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVID  112 (300)
                      +.||.|+|+ |+.|+.+++.+. ..+.++. +.|.+..  ...++.   .+.|++++.  +..+.+      .++|+|| 
T Consensus        15 ~~~v~v~G~-G~sG~a~a~~L~-~~G~~V~-~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~------~~~d~vV-   79 (473)
T PRK00141         15 SGRVLVAGA-GVSGRGIAAMLS-ELGCDVV-VADDNET--ARHKLI---EVTGVADISTAEASDQL------DSFSLVV-   79 (473)
T ss_pred             CCeEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECCChH--HHHHHH---HhcCcEEEeCCCchhHh------cCCCEEE-
Confidence            468999997 999999999887 4567554 4775321  112221   235676652  223334      3688887 


Q ss_pred             cCC--chhHHHHHHHHHHcCCCE---------------------EEeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcH
Q 022250          113 FTD--ASTVYDNVKQATAFGMRS---------------------VVYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus       113 fT~--p~~~~~~~~~al~~G~~v---------------------VigTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                      .|+  |..+ +.+..|.++|+++                     +|+-||-+-.  -...|..+-++.+.......|+..
T Consensus        80 ~Spgi~~~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~  158 (473)
T PRK00141         80 TSPGWRPDS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGV  158 (473)
T ss_pred             eCCCCCCCC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccCCh
Confidence            453  3322 3445555666533                     3455553211  122344444555555666777544


Q ss_pred             H
Q 022250          168 G  168 (300)
Q Consensus       168 G  168 (300)
                      .
T Consensus       159 p  159 (473)
T PRK00141        159 P  159 (473)
T ss_pred             h
Confidence            4

>PRK12320 hypothetical protein; Provisional

Probab=94.38  E-value=0.3  Score=51.34  Aligned_cols=84  Identities=15%  Similarity=0.217  Sum_probs=51.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e---c--CHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---S--DLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~--dl~~~l~~~~~~~~~DV  109 (300)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++.....   +..       ..++.+ .   .  .+.+++      .++|+
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~-~G~~Vi~ldr~~~---~~~-------~~~ve~v~~Dl~d~~l~~al------~~~D~   63 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPH---DAL-------DPRVDYVCASLRNPVLQELA------GEADA   63 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEeCChh---hcc-------cCCceEEEccCCCHHHHHHh------cCCCE
Confidence            4899999999999999998875 5788887543221   000       001111 1   1  233444      36899


Q ss_pred             EEEcCCch----------hHHHHHHHHHHcCCCEEEe
Q 022250          110 VIDFTDAS----------TVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       110 VIDfT~p~----------~~~~~~~~al~~G~~vVig  136 (300)
                      ||.+..+.          .....+..|.++|+.+|.-
T Consensus        64 VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~  100 (699)
T PRK12320         64 VIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFV  100 (699)
T ss_pred             EEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEE
Confidence            99987532          1334566777888877743

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=94.29  E-value=0.35  Score=43.40  Aligned_cols=88  Identities=16%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ||+++|.|. |+||+.+++.+.. .++|++-.-.+.+  +.....+   ...+..+. .+.+++.      ...|||+-.
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~-ag~eV~igs~r~~--~~~~a~a---~~l~~~i~~~~~~dA~------~~aDVVvLA   67 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAK-AGHEVIIGSSRGP--KALAAAA---AALGPLITGGSNEDAA------ALADVVVLA   67 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHh-CCCeEEEecCCCh--hHHHHHH---HhhccccccCChHHHH------hcCCEEEEe
Confidence            688999996 9999999998874 5788764432221  1111011   11222221 3445554      368999955


Q ss_pred             CCchhHHHHHHHHHH-c-CCCEEE
Q 022250          114 TDASTVYDNVKQATA-F-GMRSVV  135 (300)
Q Consensus       114 T~p~~~~~~~~~al~-~-G~~vVi  135 (300)
                      .+-+...+.+..... . ||=||-
T Consensus        68 VP~~a~~~v~~~l~~~~~~KIvID   91 (211)
T COG2085          68 VPFEAIPDVLAELRDALGGKIVID   91 (211)
T ss_pred             ccHHHHHhHHHHHHHHhCCeEEEe
Confidence            555555665554443 3 344443

>PRK08291 ectoine utilization protein EutC; Validated

Probab=94.28  E-value=0.11  Score=49.61  Aligned_cols=88  Identities=17%  Similarity=0.215  Sum_probs=56.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCCCcc--eecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIP--VMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .+|+|+|+ |.+|+.++..+....+++-+.+++++.  ..+..++. +...++++  .++|+++++.      ++|+||-
T Consensus       133 ~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~--~~a~~l~~~~~~~~g~~v~~~~d~~~al~------~aDiVi~  203 (330)
T PRK08291        133 SRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDA--AKAEAYAADLRAELGIPVTVARDVHEAVA------GADIIVT  203 (330)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHhhccCceEEEeCCHHHHHc------cCCEEEE
Confidence            58999998 999999999887656777888888653  22222221 00123444  4789999884      7899987


Q ss_pred             cCCchhHHHHHH-HHHHcCCCEE
Q 022250          113 FTDASTVYDNVK-QATAFGMRSV  134 (300)
Q Consensus       113 fT~p~~~~~~~~-~al~~G~~vV  134 (300)
                      .|+...  ..+. ..++.|.++.
T Consensus       204 aT~s~~--p~i~~~~l~~g~~v~  224 (330)
T PRK08291        204 TTPSEE--PILKAEWLHPGLHVT  224 (330)
T ss_pred             eeCCCC--cEecHHHcCCCceEE
Confidence            764321  2222 2356777665

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.26  E-value=0.48  Score=44.61  Aligned_cols=96  Identities=9%  Similarity=0.027  Sum_probs=51.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc-----CCC---CcceecCHHHHHhcccccCC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-----QPL---EIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-----~~~---gv~v~~dl~~~l~~~~~~~~  106 (300)
                      +|||+|+|+ |.||..++..+.+ .+.++.-+. +..  .++-..-|+.     ...   .++++++.++ .      ..
T Consensus         5 ~m~I~IiG~-GaiG~~lA~~L~~-~g~~V~~~~-r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~   72 (313)
T PRK06249          5 TPRIGIIGT-GAIGGFYGAMLAR-AGFDVHFLL-RSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PP   72 (313)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHH-CCCeEEEEE-eCC--HHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CC
Confidence            579999998 9999999998875 456665433 221  1110000100     000   1233444443 2      46


Q ss_pred             ccEEEEcCCchhHHHHH---HHHHHcCCCEEEeCCCCCH
Q 022250          107 RAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQL  142 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~---~~al~~G~~vVigTTG~~~  142 (300)
                      +|+||-++....+.+.+   ...+..+..+|.-.-|+..
T Consensus        73 ~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~  111 (313)
T PRK06249         73 CDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGV  111 (313)
T ss_pred             CCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence            89998776544444333   3333334445544448764

>PLN00106 malate dehydrogenase

Probab=94.25  E-value=0.23  Score=47.48  Aligned_cols=36  Identities=19%  Similarity=0.173  Sum_probs=27.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +.||+|+|++|++|+.++..+...+-..=+-.+|.+
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~   53 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIA   53 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            469999998899999999988755444333456753

>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional

Probab=94.21  E-value=0.59  Score=46.92  Aligned_cols=92  Identities=20%  Similarity=0.288  Sum_probs=56.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .++.|+|+ |.-|+.+++.+.+++  +++++|.+|.+..+   .      .-.|+|+..+.+++... .+....|++|-.
T Consensus       147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~---~------~i~gvPVlg~~d~l~~~-~~~~~v~vIIAi  215 (476)
T PRK15204        147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASD---A------EINMLPVIKDTEIIWDL-NRTGDVHYILAY  215 (476)
T ss_pred             CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccc---c------ccCCCcccCCHHHHHHH-HHhCCCcEEEEe
Confidence            57999998 999999999987655  78999999864321   1      12467777655433110 012345665433


Q ss_pred             CCc--hhHHHHHHHHHHcCCCEEEeCC
Q 022250          114 TDA--STVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       114 T~p--~~~~~~~~~al~~G~~vVigTT  138 (300)
                      ...  +...+.+..+.+.|+.-|.-.|
T Consensus       216 p~~~~~~r~~il~~l~~~gv~~V~vIP  242 (476)
T PRK15204        216 EYTELEKTHFWLRELSKHHCRSVTVVP  242 (476)
T ss_pred             CcCcHHHHHHHHHHHhhcCCeEEEEeC
Confidence            322  2345677888888885333334

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=94.20  E-value=0.54  Score=43.25  Aligned_cols=126  Identities=15%  Similarity=0.174  Sum_probs=73.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-------ecCHHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D  108 (300)
                      |||.|.|.| .=|+.+++.+.+... -++.++. +. |.+....    ....+++       .+.+.+.+.    +.++|
T Consensus         1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t-~~-g~~~~~~----~~~~~~v~~G~lg~~~~l~~~l~----~~~i~   68 (249)
T PF02571_consen    1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVAT-SY-GGELLKP----ELPGLEVRVGRLGDEEGLAEFLR----ENGID   68 (249)
T ss_pred             CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEh-hh-hHhhhcc----ccCCceEEECCCCCHHHHHHHHH----hCCCc
Confidence            689999986 558999998886544 2333322 11 1111100    0011111       234555554    47899


Q ss_pred             EEEEcCCchhH---HHHHHHHHHcCCCEE-EeCCCCCH---------HHHHHHHHHhhhCC-CeEEEcCCCcHHHHHHHH
Q 022250          109 VVIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL---------ETVSALSAFCDKAS-MGCLIAPTLSIGSILLQQ  174 (300)
Q Consensus       109 VVIDfT~p~~~---~~~~~~al~~G~~vV-igTTG~~~---------e~~~~L~~~a~~~~-i~iv~a~N~SiGv~ll~~  174 (300)
                      +|||.|||-+.   ......|.+.|+|.+ ..=+.|..         +..++..+++.+.+ -.+++    .+|++-+..
T Consensus        69 ~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~ifl----ttGsk~L~~  144 (249)
T PF02571_consen   69 AVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFL----TTGSKNLPP  144 (249)
T ss_pred             EEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEE----eCchhhHHH
Confidence            99999999664   455678889999998 44443321         12333444443322 45665    889988888


Q ss_pred             HHH
Q 022250          175 AAI  177 (300)
Q Consensus       175 ~a~  177 (300)
                      +..
T Consensus       145 f~~  147 (249)
T PF02571_consen  145 FVP  147 (249)
T ss_pred             Hhh
Confidence            865

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.19  E-value=0.29  Score=46.50  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=26.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .+||+|+|+ |.||..++..+....-.+ +..+|.+
T Consensus         5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~   38 (319)
T PTZ00117          5 RKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVI   38 (319)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECC
Confidence            469999998 999999999877543256 6678864

>PRK14852 hypothetical protein; Provisional

Probab=94.19  E-value=0.24  Score=53.61  Aligned_cols=32  Identities=19%  Similarity=0.364  Sum_probs=24.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ..||+|+|+ |++|..+++.+.. .++-=+-++|
T Consensus       332 ~srVlVvGl-GGlGs~ia~~LAr-aGVG~I~L~D  363 (989)
T PRK14852        332 RSRVAIAGL-GGVGGIHLMTLAR-TGIGNFNLAD  363 (989)
T ss_pred             cCcEEEECC-cHHHHHHHHHHHH-cCCCeEEEEc
Confidence            468999999 9999999999875 4554444555

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=94.19  E-value=0.22  Score=51.68  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=24.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEV   63 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL   63 (300)
                      ++|||.|.|++|-+|+.+++.+.+ .+.++
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~-~g~~v  407 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEK-QGIAY  407 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHh-CCCeE
Confidence            468999999999999999998875 46666

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.16  E-value=2.1  Score=40.78  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=26.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      +.||+|+|+ |.||..++..+.. .++ + +..+|.+
T Consensus         6 ~~KI~IIGa-G~vG~~ia~~la~-~gl~~-i~LvDi~   39 (321)
T PTZ00082          6 RRKISLIGS-GNIGGVMAYLIVL-KNLGD-VVLFDIV   39 (321)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCCe-EEEEeCC
Confidence            468999997 9999999987764 454 7 6678864

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.15  E-value=0.5  Score=46.58  Aligned_cols=84  Identities=12%  Similarity=0.058  Sum_probs=49.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      --+|+|+|+ |.+|+.+++.+. .-+++++. +|.++. + ..+.    ...|..+ .++++++.      ..|++|++|
T Consensus       195 Gk~VvViG~-G~IG~~vA~~ak-~~Ga~ViV-~d~dp~-r-~~~A----~~~G~~v-~~leeal~------~aDVVItaT  258 (406)
T TIGR00936       195 GKTVVVAGY-GWCGKGIAMRAR-GMGARVIV-TEVDPI-R-ALEA----AMDGFRV-MTMEEAAK------IGDIFITAT  258 (406)
T ss_pred             cCEEEEECC-CHHHHHHHHHHh-hCcCEEEE-EeCChh-h-HHHH----HhcCCEe-CCHHHHHh------cCCEEEECC
Confidence            468999998 999999999877 45788554 654321 1 1111    1123332 35567763      689999887


Q ss_pred             CchhHHH-HHHHHHHcCCCEE
Q 022250          115 DASTVYD-NVKQATAFGMRSV  134 (300)
Q Consensus       115 ~p~~~~~-~~~~al~~G~~vV  134 (300)
                      ....... .....++.|.-++
T Consensus       259 G~~~vI~~~~~~~mK~Gaili  279 (406)
T TIGR00936       259 GNKDVIRGEHFENMKDGAIVA  279 (406)
T ss_pred             CCHHHHHHHHHhcCCCCcEEE
Confidence            5544433 2344445554333

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.07  E-value=0.27  Score=44.35  Aligned_cols=126  Identities=21%  Similarity=0.243  Sum_probs=72.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |+++|+|+ |++|..+++.+.+ .+.+++.+-+.+   ....++..  ...++.++    ++.+.+.+.  --.++|++|
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~-~g~~Vv~Id~d~---~~~~~~~~--~~~~~~~v~gd~t~~~~L~~a--gi~~aD~vv   71 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSE-EGHNVVLIDRDE---ERVEEFLA--DELDTHVVIGDATDEDVLEEA--GIDDADAVV   71 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHh-CCCceEEEEcCH---HHHHHHhh--hhcceEEEEecCCCHHHHHhc--CCCcCCEEE
Confidence            68999998 9999999999874 567777654322   11122111  12333322    233333221  114689988


Q ss_pred             EcCCchhHHH-HHHHHHH-cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH
Q 022250          112 DFTDASTVYD-NVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (300)
Q Consensus       112 DfT~p~~~~~-~~~~al~-~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~  175 (300)
                      -.|..+.... ....+++ .|+|-|+.+.-- ++..+.+    ++.|+-.+++|=...|..+...+
T Consensus        72 a~t~~d~~N~i~~~la~~~~gv~~viar~~~-~~~~~~~----~~~g~~~ii~Pe~~~~~~l~~~i  132 (225)
T COG0569          72 AATGNDEVNSVLALLALKEFGVPRVIARARN-PEHEKVL----EKLGADVIISPEKLAAKRLARLI  132 (225)
T ss_pred             EeeCCCHHHHHHHHHHHHhcCCCcEEEEecC-HHHHHHH----HHcCCcEEECHHHHHHHHHHHHh
Confidence            7776655433 3344444 799999886543 2222222    33346678888777776655443

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=94.07  E-value=0.15  Score=50.21  Aligned_cols=85  Identities=21%  Similarity=0.268  Sum_probs=58.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||.|+|+ |.||+.+++.+.+ .++.-+-+++++.  ..+.+++   .+++  +..++++.+.+      .++||||-
T Consensus       178 ~~~vlvIGA-Gem~~lva~~L~~-~g~~~i~IaNRT~--erA~~La---~~~~~~~~~l~el~~~l------~~~DvVis  244 (414)
T COG0373         178 DKKVLVIGA-GEMGELVAKHLAE-KGVKKITIANRTL--ERAEELA---KKLGAEAVALEELLEAL------AEADVVIS  244 (414)
T ss_pred             cCeEEEEcc-cHHHHHHHHHHHh-CCCCEEEEEcCCH--HHHHHHH---HHhCCeeecHHHHHHhh------hhCCEEEE
Confidence            357999998 9999999999885 4666666777654  3344444   2344  22346666777      48999997


Q ss_pred             cCC---chhHHHHHHHHHHcCCC
Q 022250          113 FTD---ASTVYDNVKQATAFGMR  132 (300)
Q Consensus       113 fT~---p~~~~~~~~~al~~G~~  132 (300)
                      .|.   |--..+.++.+++..+.
T Consensus       245 sTsa~~~ii~~~~ve~a~~~r~~  267 (414)
T COG0373         245 STSAPHPIITREMVERALKIRKR  267 (414)
T ss_pred             ecCCCccccCHHHHHHHHhcccC
Confidence            762   33347788888887766

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.06  E-value=0.14  Score=48.88  Aligned_cols=115  Identities=12%  Similarity=0.110  Sum_probs=68.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEE---EEEec-CCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv---g~vd~-~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      .++|+| |+||..|+.+.+.+.+ .++.+-   -.-.. ...|+... +-|    ..+.+.+--++.+      .++|++
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Lee-r~fpv~~l~l~~s~~~s~gk~i~-f~g----~~~~V~~l~~~~f------~~vDia   69 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQ-SDLEIEQISIVEIEPFGEEQGIR-FNN----KAVEQIAPEEVEW------ADFNYV   69 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHh-cCCchhheeecccccccCCCEEE-ECC----EEEEEEECCccCc------ccCCEE
Confidence            479999 9999999999997764 455322   11111 22233221 111    1222221111223      378998


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCCCC-------------CHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHI-------------QLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~-------------~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      + |+..+...+.+..+.++|..||--+..|             +++.++.+   - +  ..++-.||=|.=.
T Consensus        70 ~-fag~~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~---~-~--~~IIanPNCsTi~  134 (322)
T PRK06901         70 F-FAGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAEL---R-Q--RNIVSLPDPQVSQ  134 (322)
T ss_pred             E-EcCHHHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcC---c-C--CCEEECCcHHHHH
Confidence            8 6777778999999999999888766444             33332222   1 2  2478889977654

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.95  E-value=0.25  Score=49.99  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=26.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .||+|+|+ |.||+.++..+.. .+++++ ++|.+
T Consensus         6 ~kV~VIGa-G~MG~gIA~~la~-aG~~V~-l~d~~   37 (503)
T TIGR02279         6 VTVAVIGA-GAMGAGIAQVAAS-AGHQVL-LYDIR   37 (503)
T ss_pred             cEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCC
Confidence            57999998 9999999998874 588876 56753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.94  E-value=0.2  Score=47.48  Aligned_cols=71  Identities=21%  Similarity=0.209  Sum_probs=41.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC---CCc--chhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGE--DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~--d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      ..||+|+|+ |++|..++-.+....-..=+..+|.+.   .|.  |............+..+.|++++       .++|+
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-------~~adi   74 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-------ANSKV   74 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-------CCCCE
Confidence            469999998 999999998887654443344678532   121  21111111011123334688764       47999


Q ss_pred             EEEc
Q 022250          110 VIDF  113 (300)
Q Consensus       110 VIDf  113 (300)
                      ||.+
T Consensus        75 vvit   78 (312)
T cd05293          75 VIVT   78 (312)
T ss_pred             EEEC
Confidence            9864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05993 short chain dehydrogenase; Provisional

Probab=93.88  E-value=0.46  Score=43.40  Aligned_cols=79  Identities=15%  Similarity=0.241  Sum_probs=51.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVID  112 (300)
                      |+.+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ..                  ++++.+     ...+ +..|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~-~G~~Vi~~-~r~~--~~------------------~~~l~~-----~~~~~~~~D   55 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQS-DGWRVFAT-CRKE--ED------------------VAALEA-----EGLEAFQLD   55 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE-ECCH--HH------------------HHHHHH-----CCceEEEcc
Confidence            345799999999999999999875 57887764 3321  11                  112211     1233 3468


Q ss_pred             cCCchhHHHHHHHHHHc---CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF---GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~---G~~vVigTTG  139 (300)
                      .+.++.....+..+.+.   .+++|+-..|
T Consensus        56 l~d~~~~~~~~~~~~~~~~g~id~li~~Ag   85 (277)
T PRK05993         56 YAEPESIAALVAQVLELSGGRLDALFNNGA   85 (277)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCccEEEECCC
Confidence            88888777777666542   5788876654

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=93.87  E-value=0.56  Score=43.63  Aligned_cols=88  Identities=15%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EE
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VV  110 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VV  110 (300)
                      +.++..+.|.|||+++|+++++.+++ .++.|+-+..+.   ....++.           .++++...     ..++ ..
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~-~g~~liLvaR~~---~kL~~la-----------~~l~~~~~-----v~v~vi~   62 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLAR-RGYNLILVARRE---DKLEALA-----------KELEDKTG-----VEVEVIP   62 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCcH---HHHHHHH-----------HHHHHhhC-----ceEEEEE
Confidence            34467899999999999999999885 577777544321   1111111           11111110     1234 36


Q ss_pred             EEcCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          111 IDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      +|.|.|+..........+.  .+.++|=.-|
T Consensus        63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG   93 (265)
T COG0300          63 ADLSDPEALERLEDELKERGGPIDVLVNNAG   93 (265)
T ss_pred             CcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence            7889998888877776676  6888886554

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=93.81  E-value=0.096  Score=51.66  Aligned_cols=79  Identities=19%  Similarity=0.257  Sum_probs=47.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc--eecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .+|+|+|+ |.||+.+++.+.. .+.+-+-+++++.  ..+..++   ..++..  .++++.+.+      .++|+||.+
T Consensus       183 ~~vlViGa-G~iG~~~a~~L~~-~G~~~V~v~~r~~--~ra~~la---~~~g~~~~~~~~~~~~l------~~aDvVI~a  249 (423)
T PRK00045        183 KKVLVIGA-GEMGELVAKHLAE-KGVRKITVANRTL--ERAEELA---EEFGGEAIPLDELPEAL------AEADIVISS  249 (423)
T ss_pred             CEEEEECc-hHHHHHHHHHHHH-CCCCeEEEEeCCH--HHHHHHH---HHcCCcEeeHHHHHHHh------ccCCEEEEC
Confidence            68999998 9999999998874 4664344566542  1222232   122221  234555666      378999998


Q ss_pred             CC-chhH--HHHHHHHH
Q 022250          114 TD-ASTV--YDNVKQAT  127 (300)
Q Consensus       114 T~-p~~~--~~~~~~al  127 (300)
                      |. |...  .+.+..++
T Consensus       250 T~s~~~~i~~~~l~~~~  266 (423)
T PRK00045        250 TGAPHPIIGKGMVERAL  266 (423)
T ss_pred             CCCCCcEEcHHHHHHHH
Confidence            84 3333  44555444

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=93.76  E-value=0.35  Score=48.09  Aligned_cols=96  Identities=16%  Similarity=0.153  Sum_probs=56.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCc-----EEEEEEecCC-----CCc-------chh----h-----hhcCcCCCCcce
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSHS-----VGE-------DIG----M-----VCDMEQPLEIPV   90 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~-----eLvg~vd~~~-----~g~-------d~~----~-----~~g~~~~~gv~v   90 (300)
                      ||.|+|| |.+|..+++.+.. .++     .-+-++|.+.     .++       |+|    +     +..+.....+..
T Consensus         1 kVlvVGa-GGlGcE~lKnLal-~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a   78 (435)
T cd01490           1 KVFLVGA-GAIGCELLKNFAL-MGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA   78 (435)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence            6899998 9999999999874 566     4555677321     111       111    0     001111112222


Q ss_pred             ec-CH---------HHHHhcccccCCccEEEEcC-CchhHHHHHHHHHHcCCCEEEe-CCCC
Q 022250           91 MS-DL---------TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVY-VPHI  140 (300)
Q Consensus        91 ~~-dl---------~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVig-TTG~  140 (300)
                      +. .+         ++.+      .++|+||++. .+++-...-..|..+++|+|.+ |.|+
T Consensus        79 ~~~~v~~~~~~~~~~~f~------~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~  134 (435)
T cd01490          79 LQNRVGPETEHIFNDEFW------EKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGT  134 (435)
T ss_pred             EecccChhhhhhhhHHHh------cCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccc
Confidence            21 11         1223      3689999987 4555566678999999999954 4343

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.76  E-value=0.34  Score=44.92  Aligned_cols=95  Identities=14%  Similarity=0.071  Sum_probs=53.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCc-------CCCCcceecCHHHHHhcccccCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-------QPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~-------~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      |||+|+|+ |.||..++..+.+. +.++..+ ++..   ....+.  |+.       ........++.+++.      .+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~-g~~V~~~-~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~   68 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEA-GRDVTFL-VRPK---RAKALRERGLVIRSDHGDAVVPGPVITDPEELT------GP   68 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHC-CCceEEE-ecHH---HHHHHHhCCeEEEeCCCeEEecceeecCHHHcc------CC
Confidence            58999998 99999999988754 5665543 3311   111100  000       001112245555554      47


Q ss_pred             ccEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCH
Q 022250          107 RAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~  142 (300)
                      +|++|-++.+..+.+.+.....   .+..+|+-..|+..
T Consensus        69 ~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~  107 (305)
T PRK12921         69 FDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ  107 (305)
T ss_pred             CCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence            8999988876666665554443   34444444458753

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=93.72  E-value=0.13  Score=48.13  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=31.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .+.||+|.|+.|.+||-+.-++..+|.+.-.+.+|.
T Consensus        27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi   62 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI   62 (345)
T ss_pred             CcceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence            369999999999999999998888888877778884

>PLN02477 glutamate dehydrogenase

Probab=93.71  E-value=0.48  Score=46.75  Aligned_cols=116  Identities=18%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCcC------CC-CcceecCHHHHHhccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------PL-EIPVMSDLTMVLGSIS  102 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~------~~-gv~v~~dl~~~l~~~~  102 (300)
                      -.||+|.|+ |++|+..++.+. ..+..++++.|.+     +.|-|..++.....      .+ +... -+.++++.   
T Consensus       206 g~~VaIqGf-GnVG~~~A~~L~-e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~---  279 (410)
T PLN02477        206 GQTFVIQGF-GNVGSWAAQLIH-EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILV---  279 (410)
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCcccee---
Confidence            378999998 999999999876 4689999999853     44666554421100      01 1111 13456664   


Q ss_pred             ccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                        .++||+|=+...... .+++.   +-+..+|+|-. + ++++..+.|    +++  .+++.|-+..
T Consensus       280 --~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L----~~r--GI~~~PD~~a  336 (410)
T PLN02477        280 --EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEIL----RKK--GVVVLPDIYA  336 (410)
T ss_pred             --ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHHh
Confidence              589999976644433 44444   45899999976 3 555443333    444  4577776643

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=93.66  E-value=0.52  Score=45.65  Aligned_cols=97  Identities=15%  Similarity=0.133  Sum_probs=61.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCC-----------------Cc--chhhhhcCcCCCCccee---
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV-----------------GE--DIGMVCDMEQPLEIPVM---   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~-----------------g~--d~~~~~g~~~~~gv~v~---   91 (300)
                      |.|+.|.|.||-+|..-.+.+.+.|+ +++++.....+.                 ..  ...++...  ..++.++   
T Consensus         1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~--~~~~~v~~G~   78 (385)
T COG0743           1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDL--LPGTEVLVGE   78 (385)
T ss_pred             CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhh--ccCceEEecH
Confidence            57899999999999999999998887 789987652110                 00  00000000  0022332   


Q ss_pred             cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      +.+.++..    ..++|+|+..-.-.+-..-...++++|+.+-...
T Consensus        79 ~~l~e~a~----~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLAN  120 (385)
T COG0743          79 EGLCELAA----EDDADVVMNAIVGAAGLLPTLAAIKAGKTIALAN  120 (385)
T ss_pred             HHHHHHHh----cCCCCEEeehhhhhcccHHHHHHHHcCCceeecc
Confidence            23444443    3568888877665555666678888888887653

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=93.64  E-value=0.52  Score=43.00  Aligned_cols=31  Identities=29%  Similarity=0.361  Sum_probs=25.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ||.|+|+ |.+|..+++.+.. .++.=.-++|.
T Consensus         1 kVlvvG~-GGlG~eilk~La~-~Gvg~i~ivD~   31 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLAL-MGFGQIHVIDM   31 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            6899998 9999999999875 56655666774

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=93.63  E-value=0.38  Score=47.65  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=27.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .|||.|.|++|-+|+.+++.+.+ .+.++++ +|+
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~-ldr  152 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIG-RGDEVIV-IDN  152 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            48999999999999999999886 4788886 443

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.60  E-value=0.26  Score=46.82  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=25.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      |||+|+|++|++|..++-.+...+-..=+..+|.+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            59999998899999999888755433223356653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=93.58  E-value=0.35  Score=41.78  Aligned_cols=149  Identities=12%  Similarity=0.138  Sum_probs=75.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|+|+|+ |..|++++..+. +.+++++-......  ... +.+   .+.|..++ +++|+.+      ..|+|+-.++
T Consensus         5 k~IAViGy-GsQG~a~AlNLr-DSG~~V~Vglr~~s--~s~-~~A---~~~Gf~v~-~~~eAv~------~aDvV~~L~P   69 (165)
T PF07991_consen    5 KTIAVIGY-GSQGHAHALNLR-DSGVNVIVGLREGS--ASW-EKA---KADGFEVM-SVAEAVK------KADVVMLLLP   69 (165)
T ss_dssp             SEEEEES--SHHHHHHHHHHH-HCC-EEEEEE-TTC--HHH-HHH---HHTT-ECC-EHHHHHH------C-SEEEE-S-
T ss_pred             CEEEEECC-ChHHHHHHHHHH-hCCCCEEEEecCCC--cCH-HHH---HHCCCeec-cHHHHHh------hCCEEEEeCC
Confidence            58999998 999999999987 46888775554432  111 111   12344443 6677774      7899885554


Q ss_pred             chhHH----HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEc
Q 022250          116 ASTVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES  191 (300)
Q Consensus       116 p~~~~----~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~  191 (300)
                      -+...    +.+.-.++.|.-++. .-||+- ....|.-   ..++-+++.+-=+.|..+=.++.+  .+-.+-.--++ 
T Consensus        70 D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni-~~~~i~p---p~~vdV~mvAPKgpG~~vR~~y~~--G~Gvp~l~AV~-  141 (165)
T PF07991_consen   70 DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI-HYGLIKP---PKDVDVIMVAPKGPGHLVRREYVE--GRGVPALIAVH-  141 (165)
T ss_dssp             HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH-HCTTS------TTSEEEEEEESSSCHHHHHHHHC--CTS--EEEEEE-
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh-hcCcccC---CCCCeEEEEecCCCChHHHHHHHc--CCCceEEEEEE-
Confidence            33333    344555667765543 467764 2222221   133555544444667544333332  11122221222 


Q ss_pred             cCCCCCCCchHHHHHHHHHHh
Q 022250          192 RPNARDFPSPDATQIANNLSN  212 (300)
Q Consensus       192 Hh~K~DaPSGTA~~l~~~i~~  212 (300)
                          .| +||.|+.++-++++
T Consensus       142 ----qD-~sg~A~~~ala~A~  157 (165)
T PF07991_consen  142 ----QD-ASGKAKELALAYAK  157 (165)
T ss_dssp             ----E--SSS-HHHHHHHHHH
T ss_pred             ----EC-CCchHHHHHHHHHH
Confidence                34 78999999988875

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=93.58  E-value=0.67  Score=46.27  Aligned_cols=138  Identities=15%  Similarity=0.151  Sum_probs=83.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---hcCc-------CC-----CCcceecCHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDME-------QP-----LEIPVMSDLT   95 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~---~g~~-------~~-----~gv~v~~dl~   95 (300)
                      .+|+|.|. |++|+..++.+.+ .+.+++++.|.+     +.|-|..++   ....       ..     .+.... +-+
T Consensus       238 k~VaVqG~-GnVg~~aa~~L~e-~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~~  314 (454)
T PTZ00079        238 KTVVVSGS-GNVAQYAVEKLLQ-LGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PGK  314 (454)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CCc
Confidence            79999997 9999999998874 699999999853     345544333   1000       00     022212 233


Q ss_pred             HHHhcccccCCccEEEEcCCchh-HHHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---HH
Q 022250           96 MVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GS  169 (300)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv  169 (300)
                      +++.     .++||.+=+..... ..+++....+++..+|++-- + .+++..+   -+ +++  .+++.|-+..   ||
T Consensus       315 ~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~---~L-~~~--GI~~~PD~~aNAGGV  383 (454)
T PTZ00079        315 KPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATH---LF-KKN--GVIFCPGKAANAGGV  383 (454)
T ss_pred             Cccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHH---HH-HHC--CcEEEChhhhcCCCe
Confidence            4443     58999997765444 37788888899999999976 3 4553322   22 443  4577676543   22


Q ss_pred             HH-HHHHHHHhccCCCCeE
Q 022250          170 IL-LQQAAISASFHYKNVE  187 (300)
Q Consensus       170 ~l-l~~~a~~~~~~~~die  187 (300)
                      .. -.+..+....+.|+.|
T Consensus       384 ~vS~~E~~Qn~~~~~W~~e  402 (454)
T PTZ00079        384 AISGLEMSQNAARLQWTAE  402 (454)
T ss_pred             eeehHHhhhhhcccCCCHH
Confidence            21 1344555555556543

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=93.53  E-value=0.27  Score=47.99  Aligned_cols=121  Identities=16%  Similarity=0.077  Sum_probs=87.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-ee---c----CHHHHHhcccccCC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---S----DLTMVLGSISQSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~---~----dl~~~l~~~~~~~~  106 (300)
                      +-+|.+.|+ |.+.+-.++.+.++.+.++.-+.+.-   .|+..++.   ..+++ +.   .    .++..+      .+
T Consensus         2 ~~~vlllgs-g~v~~p~~d~ls~~~dv~vtva~~~~---~~~~~~~~---~~~~~av~ldv~~~~~~L~~~v------~~   68 (445)
T KOG0172|consen    2 KKGVLLLGS-GFVSRPVADFLSRKKDVNVTVASRTL---KDAEALVK---GINIKAVSLDVADEELALRKEV------KP   68 (445)
T ss_pred             CcceEEecC-ccccchHHHHHhhcCCceEEEehhhH---HHHHHHhc---CCCccceEEEccchHHHHHhhh------cc
Confidence            568999997 99999999999999999887665532   34444431   12221 11   1    223333      46


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      -|++|--++...+.-.++.|..++.++|  |+.+...++++|.+.+...|+.++=---.-+|.-
T Consensus        69 ~D~viSLlP~t~h~lVaK~~i~~~~~~v--tsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGid  130 (445)
T KOG0172|consen   69 LDLVISLLPYTFHPLVAKGCIITKEDSV--TSSYVDPELEELEKAAVPAGSTIMNEIGLDPGID  130 (445)
T ss_pred             cceeeeeccchhhHHHHHHHHHhhcccc--cccccCHHHHhhhhhccCCCceEecccccCcchh
Confidence            7999988888888888899999999998  4566666889999999999887664444666665

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=93.44  E-value=0.45  Score=45.50  Aligned_cols=61  Identities=13%  Similarity=0.091  Sum_probs=42.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      ++|+|+|+ |+||+.+++.+.. -++++++ +|+...  ....        .+...++++++++      .+|+|+...+
T Consensus       147 ~~VgIIG~-G~IG~~vA~~L~~-~G~~V~~-~d~~~~--~~~~--------~~~~~~~l~ell~------~aDiVil~lP  207 (330)
T PRK12480        147 MTVAIIGT-GRIGAATAKIYAG-FGATITA-YDAYPN--KDLD--------FLTYKDSVKEAIK------DADIISLHVP  207 (330)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCEEEE-EeCChh--Hhhh--------hhhccCCHHHHHh------cCCEEEEeCC
Confidence            58999998 9999999998874 5888875 565421  0000        1223458999984      7899986654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=93.42  E-value=0.26  Score=48.55  Aligned_cols=80  Identities=20%  Similarity=0.237  Sum_probs=48.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .+|+|+|+ |.||+.+++.+.. .++.-+-+++++.  ..+..++   ...+.  ..++++.+++      ..+|+||.+
T Consensus       181 ~~VlViGa-G~iG~~~a~~L~~-~G~~~V~v~~rs~--~ra~~la---~~~g~~~i~~~~l~~~l------~~aDvVi~a  247 (417)
T TIGR01035       181 KKALLIGA-GEMGELVAKHLLR-KGVGKILIANRTY--ERAEDLA---KELGGEAVKFEDLEEYL------AEADIVISS  247 (417)
T ss_pred             CEEEEECC-hHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHH---HHcCCeEeeHHHHHHHH------hhCCEEEEC
Confidence            68999998 9999999998876 4533344566542  2222222   11221  1134666666      378999998


Q ss_pred             CC-chhH--HHHHHHHHH
Q 022250          114 TD-ASTV--YDNVKQATA  128 (300)
Q Consensus       114 T~-p~~~--~~~~~~al~  128 (300)
                      |. |...  .+.+..+..
T Consensus       248 T~s~~~ii~~e~l~~~~~  265 (417)
T TIGR01035       248 TGAPHPIVSKEDVERALR  265 (417)
T ss_pred             CCCCCceEcHHHHHHHHh
Confidence            74 3333  455555544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.40  E-value=2.3  Score=41.88  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=70.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-C-HHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-d-l~~~l~~~~~~~~~DVVIDf  113 (300)
                      .+|.|+|. |++|..+++.+. ..+.++++ .|....-.....+-.  ...|+.++. . .+..+      .++|+||--
T Consensus         6 ~~~~v~G~-g~~G~~~a~~l~-~~g~~v~~-~d~~~~~~~~~~l~~--~~~gi~~~~g~~~~~~~------~~~d~vv~s   74 (445)
T PRK04308          6 KKILVAGL-GGTGISMIAYLR-KNGAEVAA-YDAELKPERVAQIGK--MFDGLVFYTGRLKDALD------NGFDILALS   74 (445)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCCCchhHHHHhh--ccCCcEEEeCCCCHHHH------hCCCEEEEC
Confidence            58999998 999999988776 56788664 664321111111110  013555532 2 22333      368988843


Q ss_pred             CCchhHHHHHHHHHHcCCCEE-----------------EeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHHHHHHHH
Q 022250          114 TDASTVYDNVKQATAFGMRSV-----------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV-----------------igTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~  174 (300)
                      +.-....+.+..|.++|+|++                 |+-||-+-.  -...|..+-+..+.......|+  |..++..
T Consensus        75 pgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni--G~~~~~~  152 (445)
T PRK04308         75 PGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI--GTPVLEA  152 (445)
T ss_pred             CCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc--cHHHHHH
Confidence            321122344555556666543                 333432210  1223444444455555556674  4444332


Q ss_pred             HHHHhccCCCCeEEEEc
Q 022250          175 AAISASFHYKNVEIVES  191 (300)
Q Consensus       175 ~a~~~~~~~~dieIiE~  191 (300)
                      +.... ....|+-|+|.
T Consensus       153 ~~~~~-~~~~d~~VlE~  168 (445)
T PRK04308        153 ELQRE-GKKADVWVLEL  168 (445)
T ss_pred             HHhhc-CCCCcEEEEEe
Confidence            22111 12346677776

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.38  E-value=0.51  Score=45.44  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=27.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      .+||.|.|++|-+|+.+++.+.+ .++++.++.
T Consensus        21 ~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~   52 (370)
T PLN02695         21 KLRICITGAGGFIASHIARRLKA-EGHYIIASD   52 (370)
T ss_pred             CCEEEEECCccHHHHHHHHHHHh-CCCEEEEEE
Confidence            58999999999999999999886 478888754

>PLN02206 UDP-glucuronate decarboxylase

Probab=93.34  E-value=0.47  Score=47.13  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=26.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      +||.|.|++|-+|+.+++.+.+ .+.+++++
T Consensus       120 ~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~l  149 (442)
T PLN02206        120 LRVVVTGGAGFVGSHLVDRLMA-RGDSVIVV  149 (442)
T ss_pred             CEEEEECcccHHHHHHHHHHHH-CcCEEEEE
Confidence            7999999999999999999886 47888864

>PLN00203 glutamyl-tRNA reductase

Probab=93.27  E-value=0.22  Score=50.59  Aligned_cols=83  Identities=16%  Similarity=0.248  Sum_probs=49.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||+|+|+ |.||+.+++.+.. .+++=+-+++++.  ..+..+...-....+  ..++++.+++      .++|+||-
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~-~G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al------~~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVS-KGCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACA------AEADVVFT  335 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHh-CCCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHH------hcCCEEEE
Confidence            368999998 9999999998875 4554445566543  222333210000112  2235666666      47899998


Q ss_pred             cC---CchhHHHHHHHHH
Q 022250          113 FT---DASTVYDNVKQAT  127 (300)
Q Consensus       113 fT---~p~~~~~~~~~al  127 (300)
                      .|   .|-...+.++.+.
T Consensus       336 AT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        336 STSSETPLFLKEHVEALP  353 (519)
T ss_pred             ccCCCCCeeCHHHHHHhh
Confidence            76   3333466666554

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=93.24  E-value=0.52  Score=46.77  Aligned_cols=92  Identities=13%  Similarity=0.133  Sum_probs=52.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |+|||.|+|. |.=..+++..+.+. +.++..+......|.  ..++   ..+ +.+ ..|++++++ +++..++|.||-
T Consensus         1 ~~~kVLvlG~-G~re~al~~~l~~~-g~~v~~~~~~~Npg~--~~~a---~~~-~~~~~~d~e~l~~-~~~~~~id~Vi~   71 (435)
T PRK06395          1 MTMKVMLVGS-GGREDAIARAIKRS-GAILFSVIGHENPSI--KKLS---KKY-LFYDEKDYDLIED-FALKNNVDIVFV   71 (435)
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhC-CCeEEEEECCCChhh--hhcc---cce-eecCCCCHHHHHH-HHHHhCCCEEEE
Confidence            6899999997 77677888777765 467777654221110  0011   011 111 246666543 233467898875


Q ss_pred             cCCchhHHHHHHHHHHcCCCEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV  134 (300)
                      ...+......+....+.|++++
T Consensus        72 ~~d~~l~~~~~~~l~~~Gi~v~   93 (435)
T PRK06395         72 GPDPVLATPLVNNLLKRGIKVA   93 (435)
T ss_pred             CCChHHHHHHHHHHHHCCCcEE
Confidence            4433333444556677888876

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.24  E-value=0.39  Score=47.56  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=26.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +|||+|+|. |.||.-++..+.+  ++++++ +|.+
T Consensus         6 ~mkI~vIGl-GyvGlpmA~~la~--~~~V~g-~D~~   37 (425)
T PRK15182          6 EVKIAIIGL-GYVGLPLAVEFGK--SRQVVG-FDVN   37 (425)
T ss_pred             CCeEEEECc-CcchHHHHHHHhc--CCEEEE-EeCC
Confidence            479999996 9999999998764  588876 7753

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.16  E-value=0.46  Score=46.97  Aligned_cols=82  Identities=11%  Similarity=0.159  Sum_probs=47.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      -+|+|+|+ |.+|+.+++.+.. -+.+++. +|.+..  .. +.+   ...|..+. ++++++      ..+|+||++|.
T Consensus       203 ktVvViG~-G~IG~~va~~ak~-~Ga~ViV-~d~d~~--R~-~~A---~~~G~~~~-~~~e~v------~~aDVVI~atG  266 (413)
T cd00401         203 KVAVVAGY-GDVGKGCAQSLRG-QGARVIV-TEVDPI--CA-LQA---AMEGYEVM-TMEEAV------KEGDIFVTTTG  266 (413)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EECChh--hH-HHH---HhcCCEEc-cHHHHH------cCCCEEEECCC
Confidence            58999998 9999999997764 5777554 665421  11 111   12344322 345555      35788888775


Q ss_pred             chhHHHH-HHHHHHcCCCE
Q 022250          116 ASTVYDN-VKQATAFGMRS  133 (300)
Q Consensus       116 p~~~~~~-~~~al~~G~~v  133 (300)
                      ....... ...+++.|.-+
T Consensus       267 ~~~~i~~~~l~~mk~Ggil  285 (413)
T cd00401         267 NKDIITGEHFEQMKDGAIV  285 (413)
T ss_pred             CHHHHHHHHHhcCCCCcEE
Confidence            4433332 24455555444

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=93.16  E-value=0.41  Score=45.98  Aligned_cols=129  Identities=14%  Similarity=0.214  Sum_probs=77.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCC-c----EEEEE--EecCCCC-------------cchhhhhcCcCCCCcceecC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARG-M----EVAGA--IDSHSVG-------------EDIGMVCDMEQPLEIPVMSD   93 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~----eLvg~--vd~~~~g-------------~d~~~~~g~~~~~gv~v~~d   93 (300)
                      +++||.|+|. |+=|+++++.+.++-. +    .-|..  .+....|             +....+-|..-+.++...+|
T Consensus        20 ~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   20 DPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             CceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            4699999996 9999999998865321 1    11211  1111122             11122334444556777789


Q ss_pred             HHHHHhcccccCCccEEEEcCCchhH----HHHHHHHHHcCCCEEEeCCCCCHH-------HHHHHHHHhhhCCCeEEEc
Q 022250           94 LTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLE-------TVSALSAFCDKASMGCLIA  162 (300)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~----~~~~~~al~~G~~vVigTTG~~~e-------~~~~L~~~a~~~~i~iv~a  162 (300)
                      +.++.      .++|++| |..|...    .+.+.-.++.+.+.|+-+-|+...       -..++..-+-...+.++..
T Consensus        99 l~ea~------~dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~G  171 (372)
T KOG2711|consen   99 LVEAA------KDADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMG  171 (372)
T ss_pred             HHHHh------ccCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecC
Confidence            99987      4799998 6555443    345566677888888877787632       1233433344444566777


Q ss_pred             CCCcHHHH
Q 022250          163 PTLSIGSI  170 (300)
Q Consensus       163 ~N~SiGv~  170 (300)
                      ||+.-=|.
T Consensus       172 aNiA~EVa  179 (372)
T KOG2711|consen  172 ANIASEVA  179 (372)
T ss_pred             CchHHHHH
Confidence            77766543

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=93.14  E-value=0.34  Score=43.00  Aligned_cols=86  Identities=19%  Similarity=0.202  Sum_probs=51.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVID  112 (300)
                      ||.+|.|.|++|.+|+.+++.+.+ .+.+++....++.  +....+              .+++...   ..++ -+.+|
T Consensus         1 m~k~ilItGas~giG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~--------------~~~~~~~---~~~~~~~~~D   60 (248)
T PRK06947          1 MRKVVLITGASRGIGRATAVLAAA-RGWSVGINYARDA--AAAEET--------------ADAVRAA---GGRACVVAGD   60 (248)
T ss_pred             CCcEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH--------------HHHHHhc---CCcEEEEEec
Confidence            567899999999999999999885 5778765443321  111110              0111100   0111 24467


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .+.++...+.+..+.+.  .+.+|+-..|
T Consensus        61 l~~~~~~~~~~~~~~~~~~~id~li~~ag   89 (248)
T PRK06947         61 VANEADVIAMFDAVQSAFGRLDALVNNAG   89 (248)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            78888777777665543  4778886665

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.11  E-value=1.4  Score=43.75  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .||.|+|+ |..|...++.+. ..+.+++ ++|.
T Consensus        17 ~~v~viG~-G~~G~~~A~~L~-~~G~~V~-~~d~   47 (480)
T PRK01438         17 LRVVVAGL-GVSGFAAADALL-ELGARVT-VVDD   47 (480)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeC
Confidence            58999998 999999998776 4678855 4663

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.10  E-value=0.64  Score=45.26  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=28.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ++||.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus        60 ~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R   92 (390)
T PLN02657         60 DVTVLVVGATGYIGKFVVRELVR-RGYNVVAVAR   92 (390)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEe
Confidence            57999999999999999999875 5788887653

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.09  E-value=0.4  Score=44.26  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=26.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      +||.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r   32 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQ-GEEVRVLVR   32 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHC-CCEEEEEEe
Confidence            47999999999999999998854 678776544

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=93.07  E-value=0.41  Score=48.62  Aligned_cols=64  Identities=19%  Similarity=0.224  Sum_probs=45.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|+|+|. |+||+.+++.+.. -++++.+ +|+... .+..      .+.++...+++++++.      .+|+|+-..+
T Consensus       139 ktvgIiG~-G~IG~~vA~~l~~-fG~~V~~-~d~~~~-~~~~------~~~g~~~~~~l~ell~------~aDvV~l~lP  202 (525)
T TIGR01327       139 KTLGVIGL-GRIGSIVAKRAKA-FGMKVLA-YDPYIS-PERA------EQLGVELVDDLDELLA------RADFITVHTP  202 (525)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCEEEE-ECCCCC-hhHH------HhcCCEEcCCHHHHHh------hCCEEEEccC
Confidence            68999997 9999999998874 5788775 665321 1111      1345555578999984      7899886554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=93.06  E-value=0.76  Score=41.99  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=24.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcC-CcEEEEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA   66 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~   66 (300)
                      ||.|.|++|.+|+.+++.+.+.. +.+++++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~   31 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL   31 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence            58999999999999999987653 4777753

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK06988 putative formyltransferase; Provisional

Probab=93.04  E-value=0.22  Score=47.19  Aligned_cols=75  Identities=16%  Similarity=0.296  Sum_probs=47.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC--CCc----chhhhhcCcCCCCcceec--CH--HHHHhcccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGE----DIGMVCDMEQPLEIPVMS--DL--TMVLGSISQ  103 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g~----d~~~~~g~~~~~gv~v~~--dl--~~~l~~~~~  103 (300)
                      |||||++.|. +.+|....+.+.+ .++++++++..+.  .++    .+.+++   .+.|+|++.  ++  ++.++. .+
T Consensus         1 ~~mkIvf~Gs-~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~-l~   74 (312)
T PRK06988          1 MKPRAVVFAY-HNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAA-VA   74 (312)
T ss_pred             CCcEEEEEeC-cHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHH-HH
Confidence            5789999995 9999999998875 4789999887431  111    233444   456777753  22  122211 11


Q ss_pred             cCCccEEEEcC
Q 022250          104 SKARAVVIDFT  114 (300)
Q Consensus       104 ~~~~DVVIDfT  114 (300)
                      ..++|++|-+.
T Consensus        75 ~~~~Dliv~~~   85 (312)
T PRK06988         75 AAAPDFIFSFY   85 (312)
T ss_pred             hcCCCEEEEeh
Confidence            35799887665

>PRK14030 glutamate dehydrogenase; Provisional

Probab=92.95  E-value=0.66  Score=46.24  Aligned_cols=119  Identities=13%  Similarity=0.070  Sum_probs=75.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCc-----------CCC-CcceecCH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDME-----------QPL-EIPVMSDL   94 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~---~g~~-----------~~~-gv~v~~dl   94 (300)
                      ..||+|-|. |++|+..++.+.+ .+.+|+++-|+     ++.|-|...+   ....           ..+ +.... +-
T Consensus       228 g~~vaIQGf-GnVG~~aA~~L~e-~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~  304 (445)
T PRK14030        228 GKTVAISGF-GNVAWGAATKATE-LGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AG  304 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CC
Confidence            379999997 9999999998864 69999998774     2345554331   1000           011 22222 33


Q ss_pred             HHHHhcccccCCccEEEEcCCchh-HHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250           95 TMVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      ++++.     .++||.|=+..... ..+++....+++..+|+|-- +.+..+..++   -+++|  +++.|-+-
T Consensus       305 ~~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~i---L~~rG--I~~vPD~~  368 (445)
T PRK14030        305 KKPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDK---FIAAK--QLFAPGKA  368 (445)
T ss_pred             cccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH---HHHCC--CEEeCcce
Confidence            55664     68999997765444 47788888899999999976 4332222222   24444  56667654

>PRK05693 short chain dehydrogenase; Provisional

Probab=92.93  E-value=0.77  Score=41.65  Aligned_cols=78  Identities=23%  Similarity=0.289  Sum_probs=51.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++.. +++.  .+                  ++++.+     ...+ +.+|.+
T Consensus         2 k~vlItGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~------------------~~~~~~-----~~~~~~~~Dl~   54 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKA-AGYEVWAT-ARKA--ED------------------VEALAA-----AGFTAVQLDVN   54 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HH------------------HHHHHH-----CCCeEEEeeCC
Confidence            5799999999999999999875 57887754 3321  11                  112211     1233 347888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+=..|.
T Consensus        55 ~~~~~~~~~~~~~~~~~~id~vi~~ag~   82 (274)
T PRK05693         55 DGAALARLAEELEAEHGGLDVLINNAGY   82 (274)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            888887777766553  57888776653

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=92.93  E-value=0.73  Score=42.84  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=23.4

Q ss_pred             EEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        39 ~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .|.|++|-+|+.+++.+.+.....=|-++|.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~   31 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDR   31 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence            3789999999999999997665333445664

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PTZ00325 malate dehydrogenase; Provisional

Probab=92.92  E-value=1.3  Score=42.27  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=26.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .|.||+|+|+.|++|+.++..+....-..-+..+|.
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            367999999889999999998875443333345664

>PRK14031 glutamate dehydrogenase; Provisional

Probab=92.82  E-value=0.71  Score=46.00  Aligned_cols=117  Identities=17%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhh----------c----CcCCCCcceecCHHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVC----------D----MEQPLEIPVMSDLTM   96 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~----------g----~~~~~gv~v~~dl~~   96 (300)
                      .||+|.|. |++|+..++.+.+ .+.+++++.|.     ++.|-|..++.          +    .....+.... +.++
T Consensus       229 ~rVaVQGf-GNVG~~aA~~L~e-~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~  305 (444)
T PRK14031        229 KVCLVSGS-GNVAQYTAEKVLE-LGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGAR  305 (444)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCcc
Confidence            79999998 9999999998874 79999999883     22344442221          0    0001122222 3455


Q ss_pred             HHhcccccCCccEEEEcCCchh-HHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250           97 VLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      ++.     .++|+++=+..... ..+++......|+.+|++-- +.+..+  ..+.+. +++  +++.|-+
T Consensus       306 ~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~e--A~~~L~-~rg--I~~~PD~  366 (444)
T PRK14031        306 PWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPE--AIKVFQ-DAK--ILYAPGK  366 (444)
T ss_pred             ccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHH--HHHHHH-HCC--cEEeChh
Confidence            554     57898886554443 36677777778888888755 433222  223333 333  4555655

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=92.74  E-value=0.38  Score=47.01  Aligned_cols=60  Identities=20%  Similarity=0.197  Sum_probs=41.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|||+|+ |+||+.+++.+.. =++++.+ +|+..  .+.+        .. ..+.++++++.      .+|+|+-.+
T Consensus       116 gktvGIIG~-G~IG~~vA~~l~a-~G~~V~~-~dp~~--~~~~--------~~-~~~~~L~ell~------~sDiI~lh~  175 (378)
T PRK15438        116 DRTVGIVGV-GNVGRRLQARLEA-LGIKTLL-CDPPR--ADRG--------DE-GDFRSLDELVQ------EADILTFHT  175 (378)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEEE-ECCcc--cccc--------cc-cccCCHHHHHh------hCCEEEEeC
Confidence            368999998 9999999998874 5898875 56532  1100        00 12568889884      688887544

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=92.73  E-value=0.71  Score=47.70  Aligned_cols=112  Identities=14%  Similarity=0.179  Sum_probs=77.7

Q ss_pred             ceEEEEcCCch---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      --|+|+|++++   +|..+.+.+.+..+=++..+ .+.     ..+.      .|++.|++..++-      ..+|+.|-
T Consensus        11 ~svavigas~~~~~vg~~i~~nL~~~g~g~i~PV-np~-----~~~v------~G~~ay~s~~~lp------~~~dlav~   72 (598)
T COG1042          11 KSIAVIGASERPGKLGYEILRNLLEYGQGKIYPV-NPK-----YDEV------LGVKAYTSVADLP------DAPDLAVI   72 (598)
T ss_pred             ceEEEeeccCCcchhHHHHHHHHHhcCCCceEec-Ccc-----cccc------ccccccchHhhCC------CCCCeeEE
Confidence            46999999866   67778888776543344432 111     1122      4678898888875      47899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCH------HHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQL------ETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~------e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      .+++..+.+.+..|-+.|+...+--+ ||.+      +-.+++.++|++.++. ++.||--
T Consensus        73 ~v~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~r-ligPn~~  132 (598)
T COG1042          73 VVPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMR-IIGPNCL  132 (598)
T ss_pred             EechhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCce-Eeccccc
Confidence            99999999999999999977665544 7653      2234455578877775 6668843

>PRK14982 acyl-ACP reductase; Provisional

Probab=92.63  E-value=0.23  Score=47.87  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=25.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (300)
                      .+|+|+|++|.||+.+++.+.+..+. +|+ ++++
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R  189 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR  189 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence            68999999999999999999754333 444 3444

>PLN02240 UDP-glucose 4-epimerase

Probab=92.59  E-value=0.86  Score=42.79  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=27.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      +.||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~   36 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLL-AGYKVVVID   36 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            47999999999999999999886 468887753

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=92.59  E-value=0.76  Score=42.35  Aligned_cols=126  Identities=19%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+++|+|+ |.||+.++..+.+. +.++. +++++.  ..+.+++..-...+.....++++...     .++|+||.+|+
T Consensus       118 k~vliiGa-Gg~g~aia~~L~~~-g~~v~-v~~R~~--~~~~~la~~~~~~~~~~~~~~~~~~~-----~~~DivInatp  187 (270)
T TIGR00507       118 QRVLIIGA-GGAARAVALPLLKA-DCNVI-IANRTV--SKAEELAERFQRYGEIQAFSMDELPL-----HRVDLIINATS  187 (270)
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHHHHHhhcCceEEechhhhcc-----cCccEEEECCC
Confidence            57999998 99999999998854 56654 556542  12222221001112111123333221     36899998885


Q ss_pred             chh---HH--HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          116 AST---VY--DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       116 p~~---~~--~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      ...   ..  ......++.+. +|+-..-...+.  .+.+.|+++|.+++-    .+++ |+.|++.++
T Consensus       188 ~gm~~~~~~~~~~~~~l~~~~-~v~D~~y~p~~T--~ll~~A~~~G~~~vd----G~~M-l~~Qa~~~f  248 (270)
T TIGR00507       188 AGMSGNIDEPPVPAEKLKEGM-VVYDMVYNPGET--PFLAEAKSLGTKTID----GLGM-LVAQAALAF  248 (270)
T ss_pred             CCCCCCCCCCCCCHHHcCCCC-EEEEeccCCCCC--HHHHHHHHCCCeeeC----CHHH-HHHHHHHHH
Confidence            321   10  11123344454 343322111111  477778888887663    3333 345555554

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06932 glycerate dehydrogenase; Provisional

Probab=92.55  E-value=1  Score=42.73  Aligned_cols=60  Identities=15%  Similarity=0.086  Sum_probs=41.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |++|+.+++.+. .=++++++ +|+..  .+  .       ... -+.++++++.      .+|+|+...
T Consensus       147 gktvgIiG~-G~IG~~va~~l~-~fg~~V~~-~~~~~--~~--~-------~~~-~~~~l~ell~------~sDiv~l~~  205 (314)
T PRK06932        147 GSTLGVFGK-GCLGTEVGRLAQ-ALGMKVLY-AEHKG--AS--V-------CRE-GYTPFEEVLK------QADIVTLHC  205 (314)
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCCCEEEE-ECCCc--cc--c-------ccc-ccCCHHHHHH------hCCEEEEcC
Confidence            378999998 999999999876 45888875 55431  10  0       011 1468999995      789998655


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       206 P  206 (314)
T PRK06932        206 P  206 (314)
T ss_pred             C
Confidence            3

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=92.50  E-value=0.38  Score=45.27  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=24.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      ||+|+|+ |.+|+.++..+....-. +|+ ++|.+
T Consensus         2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~-l~D~~   34 (306)
T cd05291           2 KVVIIGA-GHVGSSFAYSLVNQGIADELV-LIDIN   34 (306)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence            8999998 99999999988765432 544 56753

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=92.49  E-value=1  Score=43.33  Aligned_cols=169  Identities=18%  Similarity=0.147  Sum_probs=102.5

Q ss_pred             CCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchh------hhhcCc-CCCCcceecCHHHHHhcccc
Q 022250           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG------MVCDME-QPLEIPVMSDLTMVLGSISQ  103 (300)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~------~~~g~~-~~~gv~v~~dl~~~l~~~~~  103 (300)
                      |+-|..-+.|.|++|-.|+.+++.+.. .+...  ++.    |++..      ..+|.. ..+++-+-+.+++.+     
T Consensus         2 ~~e~e~d~iiYGAtGy~G~lvae~l~~-~g~~~--aLA----gRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~-----   69 (382)
T COG3268           2 PMEREYDIIIYGATGYAGGLVAEYLAR-EGLTA--ALA----GRSSAKLDALRASLGPEAAVFPLGVPAALEAMA-----   69 (382)
T ss_pred             CCCcceeEEEEccccchhHHHHHHHHH-cCCch--hhc----cCCHHHHHHHHHhcCccccccCCCCHHHHHHHH-----
Confidence            334557799999999999999998874 45544  121    22221      112221 111221223455555     


Q ss_pred             cCCccEEEEcCCchhH--HHHHHHHHHcCCCEEEeCCC-CC-HHHHHHH-HHHhhhCCCeEEEcCCCc-HHHHH-HHHHH
Q 022250          104 SKARAVVIDFTDASTV--YDNVKQATAFGMRSVVYVPH-IQ-LETVSAL-SAFCDKASMGCLIAPTLS-IGSIL-LQQAA  176 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~--~~~~~~al~~G~~vVigTTG-~~-~e~~~~L-~~~a~~~~i~iv~a~N~S-iGv~l-l~~~a  176 (300)
                       ...+||+.+.-|-..  ...+..|+.+|.+-.-= || .. -|+...+ .+-|++.|+.|+-..-|- |-..+ +..+.
T Consensus        70 -~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~Di-TGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~  147 (382)
T COG3268          70 -SRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADI-TGEIMFFENSIDLYHAQAADAGARIIPGCGFDSIPSDLGVYALL  147 (382)
T ss_pred             -hcceEEEeccccccccccHHHHHHHHhCCCeeec-cccHHHHHHHHHHHHHHHHhcCCEEeccCCCCcCccchHHHHHH
Confidence             478999998877655  67899999999998843 44 11 2344444 677889999999877773 33223 33333


Q ss_pred             HHhccCCCCeEEEEccC-CCCCC----CchHHHHHHHHHHhcC
Q 022250          177 ISASFHYKNVEIVESRP-NARDF----PSPDATQIANNLSNLG  214 (300)
Q Consensus       177 ~~~~~~~~dieIiE~Hh-~K~Da----PSGTA~~l~~~i~~~~  214 (300)
                      ++.- ..+-=|.+..|- -+-+.    --|||....|.++...
T Consensus       148 ~~~~-~d~~~~~~~t~l~l~s~t~~g~S~GTaat~~e~l~~~~  189 (382)
T COG3268         148 KQAL-PDGTEELIATHLALGSFTGSGISGGTAATSVEGLATAG  189 (382)
T ss_pred             HhhC-cccccchhhhheeeeecccCCcccccHHHHHHHHHhcc
Confidence            3332 223345666675 34443    4589999999987743

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=92.48  E-value=0.34  Score=45.76  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=27.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |.||.|.|++|-+|+.+++.+.+ .+.+++.++++
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~-~g~~~v~~~~~   34 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIIN-ETSDAVVVVDK   34 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHH-cCCCEEEEEec
Confidence            46899999999999999999985 46666666664

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.43  E-value=1.6  Score=44.51  Aligned_cols=126  Identities=8%  Similarity=0.072  Sum_probs=66.3

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCc
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKAR  107 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~  107 (300)
                      .+++=+|.|+|+ |++|+.+++.+.+ .+.+++ ++|.++  +...++    .+.|++++    +|. +++++ ..-+++
T Consensus       414 ~~~~~hiiI~G~-G~~G~~la~~L~~-~g~~vv-vId~d~--~~~~~~----~~~g~~~i~GD~~~~-~~L~~-a~i~~a  482 (558)
T PRK10669        414 VDICNHALLVGY-GRVGSLLGEKLLA-AGIPLV-VIETSR--TRVDEL----RERGIRAVLGNAANE-EIMQL-AHLDCA  482 (558)
T ss_pred             cccCCCEEEECC-ChHHHHHHHHHHH-CCCCEE-EEECCH--HHHHHH----HHCCCeEEEcCCCCH-HHHHh-cCcccc
Confidence            344567999998 9999999998874 456665 567543  122222    12344432    232 33321 112467


Q ss_pred             cEEEEcCCchhH-HHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHH
Q 022250          108 AVVIDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (300)
Q Consensus       108 DVVIDfT~p~~~-~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~  174 (300)
                      |++|-.++-+.. ...+..+.+.  .++++.=.  -++++.+.+    ++.|+-.++.|..-++-.+.+.
T Consensus       483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~--~~~~~~~~l----~~~Gad~vv~p~~~~a~~i~~~  546 (558)
T PRK10669        483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARA--HYDDEVAYI----TERGANQVVMGEREIARTMLEL  546 (558)
T ss_pred             CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHH----HHcCCCEEEChHHHHHHHHHHH
Confidence            877645433322 2233333332  34455322  244454445    3456777887777666444433

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=92.36  E-value=1.5  Score=43.44  Aligned_cols=123  Identities=16%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh--hhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~~~--~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      .-+|.|+|+ |.+|..+++.+. .+|+.=+-++|.... ..|.+.  ++.. ...|-+-.....+.+.    .-++||-+
T Consensus        20 ~s~VlliG~-gglGsEilKNLv-L~GIg~~tIvD~~~V~~sDL~~nFfl~~-~diGk~kA~~~~~~L~----eLNp~V~i   92 (425)
T cd01493          20 SAHVCLLNA-TATGTEILKNLV-LPGIGSFTIVDGSKVDEEDLGNNFFLDA-SSLGKSRAEATCELLQ----ELNPDVNG   92 (425)
T ss_pred             hCeEEEEcC-cHHHHHHHHHHH-HcCCCeEEEECCCcCchhhccccccCCh-hhcCcHHHHHHHHHHH----HHCCCCEE
Confidence            368999998 899999999987 578766667775321 112111  0000 0111111111122232    24788877


Q ss_pred             EcC--CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          112 DFT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       112 DfT--~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      ++.  .++...+..... =.+-.+||.|+ .+......|.++|.+.++|++++..++
T Consensus        93 ~~~~e~~~~ll~~~~~f-~~~fdiVI~t~-~~~~~~~~L~~~c~~~~iPlI~~~s~G  147 (425)
T cd01493          93 SAVEESPEALLDNDPSF-FSQFTVVIATN-LPESTLLRLADVLWSANIPLLYVRSYG  147 (425)
T ss_pred             EEEecccchhhhhHHHH-hcCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence            764  333322222211 23557888654 345566678899999999988766544

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PLN02214 cinnamoyl-CoA reductase

Probab=92.34  E-value=0.95  Score=42.94  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ++.+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r   42 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLE-RGYTVKGTVR   42 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeC
Confidence            356899999999999999999875 5788887653

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=92.34  E-value=0.19  Score=49.60  Aligned_cols=67  Identities=18%  Similarity=0.210  Sum_probs=43.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC---cceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .||.|+|+ |.||+.+++.+.. .+..-+-+++++.  ..+..++   ..++   +..++++.+.+      .++|+||.
T Consensus       182 kkvlviGa-G~~a~~va~~L~~-~g~~~I~V~nRt~--~ra~~La---~~~~~~~~~~~~~l~~~l------~~aDiVI~  248 (414)
T PRK13940        182 KNVLIIGA-GQTGELLFRHVTA-LAPKQIMLANRTI--EKAQKIT---SAFRNASAHYLSELPQLI------KKADIIIA  248 (414)
T ss_pred             CEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHH---HHhcCCeEecHHHHHHHh------ccCCEEEE
Confidence            68999997 9999999999875 4544455566543  2233333   1222   22246666777      47999998


Q ss_pred             cCC
Q 022250          113 FTD  115 (300)
Q Consensus       113 fT~  115 (300)
                      +|.
T Consensus       249 aT~  251 (414)
T PRK13940        249 AVN  251 (414)
T ss_pred             CcC
Confidence            874

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=92.32  E-value=0.61  Score=44.41  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=49.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc---ceec--CHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMS--DLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~~--dl~~~l~~~~~~~~~DVV  110 (300)
                      -+|.|+|++|.+|...++.++. -+...++++.++.   ... ++   .+.|.   -.|.  |+.+.+.+......+|+|
T Consensus       144 ~~VLV~gaaGgVG~~aiQlAk~-~G~~~v~~~~s~~---k~~-~~---~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv  215 (326)
T COG0604         144 ETVLVHGAAGGVGSAAIQLAKA-LGATVVAVVSSSE---KLE-LL---KELGADHVINYREEDFVEQVRELTGGKGVDVV  215 (326)
T ss_pred             CEEEEecCCchHHHHHHHHHHH-cCCcEEEEecCHH---HHH-HH---HhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence            4699999999999999997765 4545565555431   111 11   12221   1111  123322211111245666


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      +|..-.+...+.+......|.=+.+|.+
T Consensus       216 ~D~vG~~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         216 LDTVGGDTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             EECCCHHHHHHHHHHhccCCEEEEEecC
Confidence            6666555555555544445555555554

>PRK06182 short chain dehydrogenase; Validated

Probab=92.32  E-value=1.9  Score=39.03  Aligned_cols=78  Identities=19%  Similarity=0.264  Sum_probs=52.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++. +++.  ...                  +++..     .... +..|.+
T Consensus         4 k~vlItGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~l------------------~~~~~-----~~~~~~~~Dv~   56 (273)
T PRK06182          4 KVALVTGASSGIGKATARRLAA-QGYTVYGA-ARRV--DKM------------------EDLAS-----LGVHPLSLDVT   56 (273)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HHH------------------HHHHh-----CCCeEEEeeCC
Confidence            5799999999999999998875 58887764 3321  111                  11111     1222 456888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++.....+....+.  ++++|+-..|.
T Consensus        57 ~~~~~~~~~~~~~~~~~~id~li~~ag~   84 (273)
T PRK06182         57 DEASIKAAVDTIIAEEGRIDVLVNNAGY   84 (273)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            888887777766554  68888877664

>cd00704 MDH Malate dehydrogenase

Probab=92.28  E-value=0.56  Score=44.78  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA   58 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~   58 (300)
                      +||+|+|++|++|+.++..+...
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~   23 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASG   23 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhC
Confidence            48999999999999999988754

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=92.26  E-value=3.1  Score=40.78  Aligned_cols=117  Identities=19%  Similarity=0.179  Sum_probs=62.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcCcCCCCcceec--CHHHHHhcccccCCccEEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~---~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVI  111 (300)
                      ||.|+|. |+.|..+++.+. ..++++.+ .|.... .+..   .+..  ...|+.++.  + .+.+      .++|+||
T Consensus         1 ~~~~iG~-G~~G~a~a~~l~-~~G~~V~~-sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~-~~~~------~~~d~vv   67 (433)
T TIGR01087         1 KILILGL-GKTGRAVARFLH-KKGAEVTV-TDLKPN-EELEPSMGQLR--LNEGSVLHTGLH-LEDL------NNADLVV   67 (433)
T ss_pred             CEEEEEe-CHhHHHHHHHHH-HCCCEEEE-EeCCCC-ccchhHHHHHh--hccCcEEEecCc-hHHh------ccCCEEE
Confidence            5899998 999999998776 56888664 674321 1111   1110  123665542  3 3334      3689887


Q ss_pred             EcCC-chhHHHHHHHHHHcCCCEE--------------EeCCCCCH--HHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250          112 DFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus       112 DfT~-p~~~~~~~~~al~~G~~vV--------------igTTG~~~--e~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                      --+. |.. .+.+..|.+.|+|++              |+-||-+-  --...|..+-+..+..++...|+..
T Consensus        68 ~sp~i~~~-~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~  139 (433)
T TIGR01087        68 KSPGIPPD-HPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT  139 (433)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCH
Confidence            4331 333 344556666666654              34444321  1122344444455555677778544

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=92.23  E-value=0.64  Score=44.22  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=25.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ||+|+|++|++|..++-.+....-..=+..+|.+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIA   34 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            7999999899999999988765433323457754

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK08177 short chain dehydrogenase; Provisional

Probab=92.21  E-value=0.84  Score=40.11  Aligned_cols=80  Identities=14%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+ +++.  .+..++               ++. .     ...-..+|++.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~-~G~~V~~~-~r~~--~~~~~~---------------~~~-~-----~~~~~~~D~~d   56 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLE-RGWQVTAT-VRGP--QQDTAL---------------QAL-P-----GVHIEKLDMND   56 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHh-CCCEEEEE-eCCC--cchHHH---------------Hhc-c-----ccceEEcCCCC
Confidence            5699999999999999999885 47887654 4432  111111               010 0     00113457888


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      ++...+.+....+.++++|+=..|.
T Consensus        57 ~~~~~~~~~~~~~~~id~vi~~ag~   81 (225)
T PRK08177         57 PASLDQLLQRLQGQRFDLLFVNAGI   81 (225)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEcCcc
Confidence            8777776666655578888866553

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.18  E-value=0.5  Score=45.89  Aligned_cols=45  Identities=20%  Similarity=0.158  Sum_probs=31.4

Q ss_pred             eeeEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           23 RFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        23 ~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +..++..-|+-...||.|+|+ |++|+..++.+.. -+.+ |-++|++
T Consensus       155 ~~~~~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~-lGa~-V~v~d~~  199 (370)
T TIGR00518       155 RGVLLGGVPGVEPGDVTIIGG-GVVGTNAAKMANG-LGAT-VTILDIN  199 (370)
T ss_pred             cceeecCCCCCCCceEEEEcC-CHHHHHHHHHHHH-CCCe-EEEEECC
Confidence            344555444333578999998 9999999998875 4677 4457754

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=92.11  E-value=0.87  Score=41.85  Aligned_cols=30  Identities=27%  Similarity=0.529  Sum_probs=23.4

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCc-EEEEEEec
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (300)
                      |.|.|++|-+|+.+++.+.+. +. ++++ +++
T Consensus         1 ilItGatG~iG~~l~~~L~~~-g~~~v~~-~~~   31 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNER-GITDILV-VDN   31 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHc-CCceEEE-Eec
Confidence            579999999999999999865 44 5554 453

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=92.03  E-value=0.69  Score=40.40  Aligned_cols=31  Identities=39%  Similarity=0.434  Sum_probs=25.0

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |.|+|++|-+|+.+++.+.+ .+.+++.....
T Consensus         1 IlI~GatG~iG~~l~~~l~~-~g~~v~~~~~~   31 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLK-KGHEVIVLSRS   31 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTTEEEEEESC
T ss_pred             EEEEccCCHHHHHHHHHHHH-cCCcccccccc
Confidence            68999999999999999885 57776655443

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.01  E-value=2.3  Score=33.39  Aligned_cols=109  Identities=21%  Similarity=0.235  Sum_probs=54.2

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEEEc
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  +....+.    +.++++.    .+.+.+.. . .-.++|.+|-.
T Consensus         1 vvI~G~-g~~~~~i~~~L~~-~~~~vvv-id~d~--~~~~~~~----~~~~~~i~gd~~~~~~l~~-a-~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKE-GGIDVVV-IDRDP--ERVEELR----EEGVEVIYGDATDPEVLER-A-GIEKADAVVIL   69 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHH-TTSEEEE-EESSH--HHHHHHH----HTTSEEEES-TTSHHHHHH-T-TGGCESEEEEE
T ss_pred             eEEEcC-CHHHHHHHHHHHh-CCCEEEE-EECCc--HHHHHHH----hcccccccccchhhhHHhh-c-CccccCEEEEc
Confidence            679998 9999999999987 5556664 55432  1111111    2233332    23322221 0 12467877766


Q ss_pred             CCchh-HHHHHHHHHH-cC-CCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          114 TDAST-VYDNVKQATA-FG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       114 T~p~~-~~~~~~~al~-~G-~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      |.-+. ....+..+.+ ++ ++++.  .-.+++..+.+    ++.|+-.+++|
T Consensus        70 ~~~d~~n~~~~~~~r~~~~~~~ii~--~~~~~~~~~~l----~~~g~d~vi~P  116 (116)
T PF02254_consen   70 TDDDEENLLIALLARELNPDIRIIA--RVNDPENAELL----RQAGADHVISP  116 (116)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSEEEE--EESSHHHHHHH----HHTT-SEEEEH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCeEEE--EECCHHHHHHH----HHCCcCEEECc
Confidence            65443 3445555555 33 34443  23334443344    33445555544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02602 lactate dehydrogenase

Probab=91.97  E-value=0.59  Score=45.17  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=25.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .||+|+|+ |++|..++-.+...+-..=+..+|.+
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~   71 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVN   71 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            69999997 99999999988765444334467753

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=91.85  E-value=0.86  Score=43.39  Aligned_cols=31  Identities=29%  Similarity=0.362  Sum_probs=26.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ||.|+|+ |.+|..+++.+. ..++.=+-++|.
T Consensus         1 kVlIVGa-GGlG~EiaKnLa-l~Gvg~ItIvD~   31 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLV-LTGFGEIHIIDL   31 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHH-HhcCCeEEEEcC
Confidence            6999998 999999999987 457777777884

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=91.83  E-value=1  Score=40.81  Aligned_cols=30  Identities=37%  Similarity=0.445  Sum_probs=25.4

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   30 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTK-DGHEVTILTR   30 (292)
T ss_pred             CEEEcccchhhHHHHHHHHH-cCCEEEEEeC
Confidence            57999999999999999875 5789887654

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=91.74  E-value=1  Score=42.02  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=26.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~   30 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVVIL   30 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHH-CCCeEEEE
Confidence            5899999999999999998875 57888774

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.71  E-value=2.1  Score=42.09  Aligned_cols=121  Identities=14%  Similarity=0.129  Sum_probs=65.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhhcCcCCCC-cceecCHHHHHhcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVCDMEQPLE-IPVMSDLTMVLGSI  101 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------~g------~d~~~~~g~~~~~g-v~v~~dl~~~l~~~  101 (300)
                      |||.|+|. |-+|-...-.+.+ -++++++ +|.+.       .|      +.+.+++--....| ...++|++++++  
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~-~GHeVv~-vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~--   75 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAE-LGHEVVC-VDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK--   75 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHH-cCCeEEE-EeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence            79999996 9999999887764 5788887 44210       01      11223331111122 566788888874  


Q ss_pred             cccCCccEEEEcC--Cch--h--HHHHHHHHHH------cCCCEEEeC-C---CCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          102 SQSKARAVVIDFT--DAS--T--VYDNVKQATA------FGMRSVVYV-P---HIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       102 ~~~~~~DVVIDfT--~p~--~--~~~~~~~al~------~G~~vVigT-T---G~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                          +.|+++.++  ++.  .  -..+++.+++      .+.++|+.+ |   |.+++-.+.+.+........++..|=|
T Consensus        76 ----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF  151 (414)
T COG1004          76 ----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF  151 (414)
T ss_pred             ----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence                789888775  222  1  1222222222      233666665 3   776654444444443323334444433

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=91.68  E-value=2.5  Score=43.70  Aligned_cols=123  Identities=11%  Similarity=0.086  Sum_probs=68.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVV  110 (300)
                      ..+|.|+|+ |++|+.+++.+.+ .+.+++ ++|.++  +.+..+    .+.|.+++    ++. +++++ ..-.++|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~-~g~~vv-vID~d~--~~v~~~----~~~g~~v~~GDat~~-~~L~~-agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMA-NKMRIT-VLERDI--SAVNLM----RKYGYKVYYGDATQL-ELLRA-AGAEKAEAI  468 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHh-CCCCEE-EEECCH--HHHHHH----HhCCCeEEEeeCCCH-HHHHh-cCCccCCEE
Confidence            468999998 9999999998774 566765 467543  222222    23455553    233 33321 112467887


Q ss_pred             EEcCC-chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250          111 IDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (300)
Q Consensus       111 IDfT~-p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll  172 (300)
                      |-.+. ++.....+..+.+...++=|=...-++++.+.|.++    |+-.++-.+|--+-.+-
T Consensus       469 v~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~----Ga~~vv~e~~es~l~l~  527 (601)
T PRK03659        469 VITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQA----GVTQFSRETFSSALELG  527 (601)
T ss_pred             EEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhC----CCCEEEccHHHHHHHHH
Confidence            76554 344455556666654332222234455666666544    45556666665555443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.67  E-value=0.95  Score=46.03  Aligned_cols=64  Identities=19%  Similarity=0.197  Sum_probs=43.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++++ +|+... .+..      ...++... ++++++.      .+|+|+-..
T Consensus       140 gktvgIiG~-G~IG~~vA~~l~~-fG~~V~~-~d~~~~-~~~~------~~~g~~~~-~l~ell~------~aDiV~l~l  202 (526)
T PRK13581        140 GKTLGIIGL-GRIGSEVAKRAKA-FGMKVIA-YDPYIS-PERA------AQLGVELV-SLDELLA------RADFITLHT  202 (526)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCEEEE-ECCCCC-hhHH------HhcCCEEE-cHHHHHh------hCCEEEEcc
Confidence            378999998 9999999998874 5888775 665321 1111      12344444 8999984      789888655


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       203 P  203 (526)
T PRK13581        203 P  203 (526)
T ss_pred             C
Confidence            3

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=91.66  E-value=0.69  Score=44.14  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK   57 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~   57 (300)
                      +.||+|+|++|++|..++-.+..
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~   24 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIAS   24 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHh
Confidence            47999999889999999987764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=91.61  E-value=0.4  Score=46.36  Aligned_cols=154  Identities=16%  Similarity=0.164  Sum_probs=90.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc---CCcEEEEEEecCC--CCcchhhhhcCcC----CCC-cceec-----CHHHHHh
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHS--VGEDIGMVCDMEQ----PLE-IPVMS-----DLTMVLG   99 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~--~g~d~~~~~g~~~----~~g-v~v~~-----dl~~~l~   99 (300)
                      ..-+.|.||+|-.|+.+++.+...   ++..+. +..++.  .. +.-+.++...    +.. +.+.|     ++++.. 
T Consensus         5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla-vAGRn~~KL~-~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema-   81 (423)
T KOG2733|consen    5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA-VAGRNEKKLQ-EVLEKVGEKTGTDLSSSVILIADSANEASLDEMA-   81 (423)
T ss_pred             eeeEEEEccccccceeeHHHHhhhhcccCceEE-EecCCHHHHH-HHHHHHhhccCCCcccceEEEecCCCHHHHHHHH-
Confidence            356899999999999999988653   344332 222221  10 1111111100    011 22222     366655 


Q ss_pred             cccccCCccEEEEcCCchhH--HHHHHHHHHcCCCEE--EeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC-----cHHHH
Q 022250          100 SISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIAPTL-----SIGSI  170 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~--~~~~~~al~~G~~vV--igTTG~~~e~~~~L~~~a~~~~i~iv~a~N~-----SiGv~  170 (300)
                           ..+-|||.+--|--+  ...++.|+++|.+-|  .|-|-|-+--..+-.+.|+++|+.||=+.-|     -+||+
T Consensus        82 -----k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDSIPaDlGv~  156 (423)
T KOG2733|consen   82 -----KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDSIPADLGVM  156 (423)
T ss_pred             -----hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCCCCccceee
Confidence                 367889988866554  678899999999887  4444454433445678899999998877775     46765


Q ss_pred             HHHHHHHHhccCCCCeEEEEc--c-CCCCCCCchHHH
Q 022250          171 LLQQAAISASFHYKNVEIVES--R-PNARDFPSPDAT  204 (300)
Q Consensus       171 ll~~~a~~~~~~~~dieIiE~--H-h~K~DaPSGTA~  204 (300)
                      .+.+-   +   ..++.=+|.  | |.|  -|||+++
T Consensus       157 f~~k~---f---dg~ln~VEsfl~Lh~~--gp~G~sl  185 (423)
T KOG2733|consen  157 FLRKN---F---DGVLNHVESFLQLHSK--GPSGYSL  185 (423)
T ss_pred             eehhh---c---cccHHHHHHHHhhhcc--CCccccc
Confidence            54321   1   123333565  2 345  6999766

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=91.59  E-value=0.97  Score=42.89  Aligned_cols=146  Identities=22%  Similarity=0.250  Sum_probs=84.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-------cCHHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-------SDLTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-------~dl~~~l~~~~~~~~~D  108 (300)
                      |+|.|.|..|-+|+..+..+.+ .+.+++ ++|.-..|... .+.    ...++.+       .-++++++    +.++|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~~-~v~----~~~~~f~~gDi~D~~~L~~vf~----~~~id   69 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHKI-ALL----KLQFKFYEGDLLDRALLTAVFE----ENKID   69 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCHH-Hhh----hccCceEEeccccHHHHHHHHH----hcCCC
Confidence            5799999999999999998886 688876 57743222211 111    0001222       24566676    47899


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCC-eEEEcCCCcHHHHHHHHHHHHhccCCCCeE
Q 022250          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM-GCLIAPTLSIGSILLQQAAISASFHYKNVE  187 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i-~iv~a~N~SiGv~ll~~~a~~~~~~~~die  187 (300)
                      +||.|.--..+-|-+..=++.=-+=|.||-        .|.+++++.++ .+|+|+.           +..... -..+-
T Consensus        70 aViHFAa~~~VgESv~~Pl~Yy~NNv~gTl--------~Ll~am~~~gv~~~vFSSt-----------AavYG~-p~~~P  129 (329)
T COG1087          70 AVVHFAASISVGESVQNPLKYYDNNVVGTL--------NLIEAMLQTGVKKFIFSST-----------AAVYGE-PTTSP  129 (329)
T ss_pred             EEEECccccccchhhhCHHHHHhhchHhHH--------HHHHHHHHhCCCEEEEecc-----------hhhcCC-CCCcc
Confidence            999998544443333322222222244541        24444555554 4444432           112211 13467


Q ss_pred             EEEccCCCCCCCchHHHHHHHHHHh
Q 022250          188 IVESRPNARDFPSPDATQIANNLSN  212 (300)
Q Consensus       188 IiE~Hh~K~DaPSGTA~~l~~~i~~  212 (300)
                      |.|.|....-.|=|..+.+.|.+.+
T Consensus       130 I~E~~~~~p~NPYG~sKlm~E~iL~  154 (329)
T COG1087         130 ISETSPLAPINPYGRSKLMSEEILR  154 (329)
T ss_pred             cCCCCCCCCCCcchhHHHHHHHHHH
Confidence            8899986677799999988887643

>PRK06180 short chain dehydrogenase; Provisional

Probab=91.56  E-value=1.3  Score=40.36  Aligned_cols=82  Identities=20%  Similarity=0.146  Sum_probs=51.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      +.+|.|.|++|.+|+.+++.+.+ .+.+++++ +++.  .+...+.               +...     .... +..|.
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~~~~l~---------------~~~~-----~~~~~~~~D~   59 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALA-AGHRVVGT-VRSE--AARADFE---------------ALHP-----DRALARLLDV   59 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHh-CcCEEEEE-eCCH--HHHHHHH---------------hhcC-----CCeeEEEccC
Confidence            45799999999999999999875 58887764 4331  1111110               0000     1122 35588


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      +.++...+.+..+.+.  ++++|+=..|.
T Consensus        60 ~d~~~~~~~~~~~~~~~~~~d~vv~~ag~   88 (277)
T PRK06180         60 TDFDAIDAVVADAEATFGPIDVLVNNAGY   88 (277)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence            8888877777666553  57788766553

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=91.55  E-value=0.62  Score=44.45  Aligned_cols=64  Identities=16%  Similarity=0.101  Sum_probs=42.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |++|+.+++.+...=+++++ ++|+... .+..      ...++. +.+++++++      .+|+|+-..
T Consensus       145 gktvGIiG~-G~IG~~va~~l~~~fgm~V~-~~~~~~~-~~~~------~~~~~~-~~~l~ell~------~sDvv~lh~  208 (323)
T PRK15409        145 HKTLGIVGM-GRIGMALAQRAHFGFNMPIL-YNARRHH-KEAE------ERFNAR-YCDLDTLLQ------ESDFVCIIL  208 (323)
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHhcCCCEEE-EECCCCc-hhhH------HhcCcE-ecCHHHHHH------hCCEEEEeC
Confidence            478999998 99999999987523478877 4554321 1111      123333 468999995      789988654

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=91.53  E-value=0.95  Score=47.66  Aligned_cols=33  Identities=24%  Similarity=0.191  Sum_probs=26.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||+|+|+ |-||+.|+..++...+++++ .+|.
T Consensus       304 i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~-l~d~  336 (699)
T TIGR02440       304 IKKVGILGG-GLMGGGIASVTATKAGIPVR-IKDI  336 (699)
T ss_pred             ccEEEEECC-cHHHHHHHHHHHHHcCCeEE-EEeC
Confidence            468999998 99999999877655678765 3664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=91.49  E-value=2.1  Score=37.34  Aligned_cols=33  Identities=30%  Similarity=0.531  Sum_probs=26.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++ +++++
T Consensus         6 ~~ilItGasg~iG~~l~~~l~~-~g~~v~-~~~r~   38 (246)
T PRK05653          6 KTALVTGASRGIGRAIALRLAA-DGAKVV-IYDSN   38 (246)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEE-EEeCC
Confidence            6899999999999999999885 477754 45443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.47  E-value=1.1  Score=42.38  Aligned_cols=34  Identities=24%  Similarity=0.183  Sum_probs=25.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      |||+|+|+ |.+|..++..+....-..-+.++|.+
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            58999998 99999999988765433445578864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06487 glycerate dehydrogenase; Provisional

Probab=91.36  E-value=0.67  Score=44.03  Aligned_cols=59  Identities=15%  Similarity=0.005  Sum_probs=41.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |++|+.+++.+.. =++++++ +|+..  .. .         .. -+.++++++.      .+|+|+...
T Consensus       148 gktvgIiG~-G~IG~~vA~~l~~-fgm~V~~-~~~~~--~~-~---------~~-~~~~l~ell~------~sDiv~l~l  205 (317)
T PRK06487        148 GKTLGLLGH-GELGGAVARLAEA-FGMRVLI-GQLPG--RP-A---------RP-DRLPLDELLP------QVDALTLHC  205 (317)
T ss_pred             CCEEEEECC-CHHHHHHHHHHhh-CCCEEEE-ECCCC--Cc-c---------cc-cccCHHHHHH------hCCEEEECC
Confidence            368999998 9999999998764 4888875 45431  11 0         01 1347999995      789998655


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       206 P  206 (317)
T PRK06487        206 P  206 (317)
T ss_pred             C
Confidence            3

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6

Probab=91.33  E-value=2.3  Score=33.75  Aligned_cols=90  Identities=17%  Similarity=0.165  Sum_probs=45.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||.|+|. |.=-.+++..+.+++..+=+-+.-- +.|..                    . +       . . .++. .
T Consensus         1 MkVLviGs-GgREHAia~~l~~s~~v~~v~~aPG-N~G~~--------------------~-~-------~-~-~~~~-~   47 (100)
T PF02844_consen    1 MKVLVIGS-GGREHAIAWKLSQSPSVEEVYVAPG-NPGTA--------------------E-L-------G-K-NVPI-D   47 (100)
T ss_dssp             EEEEEEES-SHHHHHHHHHHTTCTTEEEEEEEE---TTGG--------------------G-T-------S-E-EE-S--
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCCCCEEEEeCC-CHHHH--------------------h-h-------c-e-ecCC-C
Confidence            79999996 7444556677777777643333321 11100                    0 0       0 0 1112 4


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      +....+.+.+|.++++.+|+--|  ..--.+=|.+..++.|++++
T Consensus        48 ~~d~~~l~~~a~~~~idlvvvGP--E~pL~~Gl~D~l~~~gi~vf   90 (100)
T PF02844_consen   48 ITDPEELADFAKENKIDLVVVGP--EAPLVAGLADALRAAGIPVF   90 (100)
T ss_dssp             TT-HHHHHHHHHHTTESEEEESS--HHHHHTTHHHHHHHTT-CEE
T ss_pred             CCCHHHHHHHHHHcCCCEEEECC--hHHHHHHHHHHHHHCCCcEE
Confidence            44556666777788888775332  11122335666666777643

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=91.32  E-value=1.3  Score=42.11  Aligned_cols=30  Identities=20%  Similarity=0.291  Sum_probs=23.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ||.|+|+ |..|..+++.+.. .++.=+-++|
T Consensus         1 kVLIvGa-GGLGs~vA~~La~-aGVg~ItlvD   30 (307)
T cd01486           1 KCLLLGA-GTLGCNVARNLLG-WGVRHITFVD   30 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEC
Confidence            6999999 9999999999874 4655455566

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PLN02494 adenosylhomocysteinase

Probab=91.31  E-value=1.3  Score=44.51  Aligned_cols=99  Identities=11%  Similarity=0.081  Sum_probs=54.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      --+|+|+|+ |.+|+.+++.+.. -+++++. ++.+..  ...+ +   ...|..+. ++++++.      .+|++|+.|
T Consensus       254 GKtVvViGy-G~IGr~vA~~aka-~Ga~VIV-~e~dp~--r~~e-A---~~~G~~vv-~leEal~------~ADVVI~tT  317 (477)
T PLN02494        254 GKVAVICGY-GDVGKGCAAAMKA-AGARVIV-TEIDPI--CALQ-A---LMEGYQVL-TLEDVVS------EADIFVTTT  317 (477)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCch--hhHH-H---HhcCCeec-cHHHHHh------hCCEEEECC
Confidence            368999998 9999999998874 4787554 654321  1011 1   11233322 5778774      689999866


Q ss_pred             CchhH-HHHHHHHHHcCCCEEEeCCCC-C-HHHHHHHHHH
Q 022250          115 DASTV-YDNVKQATAFGMRSVVYVPHI-Q-LETVSALSAF  151 (300)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vVigTTG~-~-~e~~~~L~~~  151 (300)
                      ..... .......++.|--++  ..|. . +-+.+.|.++
T Consensus       318 Gt~~vI~~e~L~~MK~GAiLi--NvGr~~~eID~~aL~~~  355 (477)
T PLN02494        318 GNKDIIMVDHMRKMKNNAIVC--NIGHFDNEIDMLGLETY  355 (477)
T ss_pred             CCccchHHHHHhcCCCCCEEE--EcCCCCCccCHHHHhhc
Confidence            54432 233333444443333  2332 2 2234555555

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=91.25  E-value=2.2  Score=41.03  Aligned_cols=105  Identities=15%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      --+|+|+|. |++|+.+++.+... +..+. ...+.. ..+...       +++.. +.|+++.+.      ++|++|-.
T Consensus       162 gK~vgilG~-G~IG~~ia~rL~~F-g~~i~-y~~r~~~~~~~~~-------~~~~~-~~d~~~~~~------~sD~ivv~  224 (336)
T KOG0069|consen  162 GKTVGILGL-GRIGKAIAKRLKPF-GCVIL-YHSRTQLPPEEAY-------EYYAE-FVDIEELLA------NSDVIVVN  224 (336)
T ss_pred             CCEEEEecC-cHHHHHHHHhhhhc-cceee-eecccCCchhhHH-------Hhccc-ccCHHHHHh------hCCEEEEe
Confidence            378999998 99999999998763 34333 222211 111111       11111 458889884      78988876


Q ss_pred             CC-chhH--HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCC
Q 022250          114 TD-ASTV--YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASM  157 (300)
Q Consensus       114 T~-p~~~--~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i  157 (300)
                      .+ .+.+  .-|-+.+...+.-+|+=.+  |--- ..+.+.++.++..+
T Consensus       225 ~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~ii-de~~l~eaL~sG~i  272 (336)
T KOG0069|consen  225 CPLTKETRHLINKKFIEKMKDGAVLVNTARGAII-DEEALVEALKSGKI  272 (336)
T ss_pred             cCCCHHHHHHhhHHHHHhcCCCeEEEeccccccc-cHHHHHHHHhcCCc
Confidence            53 2222  4455666677777776666  3111 12356777766443

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=91.16  E-value=2.9  Score=43.47  Aligned_cols=118  Identities=15%  Similarity=0.188  Sum_probs=66.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVV  110 (300)
                      .-+|.|+|+ |++|+.+++.+.+ .+.+++ ++|.+.  +.+..+    .+.|.+++    ++.+ ++.+ ..-.++|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~-~g~~vv-vID~d~--~~v~~~----~~~g~~v~~GDat~~~-~L~~-agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLS-SGVKMT-VLDHDP--DHIETL----RKFGMKVFYGDATRMD-LLES-AGAAKAEVL  468 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHh-CCCCEE-EEECCH--HHHHHH----HhcCCeEEEEeCCCHH-HHHh-cCCCcCCEE
Confidence            468999998 9999999998874 466665 467543  122222    23455554    2433 3321 012467877


Q ss_pred             EEcC-CchhHHHHHHHHHHcCC--CEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          111 IDFT-DASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       111 IDfT-~p~~~~~~~~~al~~G~--~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      |-.+ .++.....+..+.++..  ++++  -.-++++.++|.++    |+-.++-..+.-+.
T Consensus       469 vv~~~d~~~n~~i~~~ar~~~p~~~iia--Ra~d~~~~~~L~~~----Gad~v~~e~~e~sl  524 (621)
T PRK03562        469 INAIDDPQTSLQLVELVKEHFPHLQIIA--RARDVDHYIRLRQA----GVEKPERETFEGAL  524 (621)
T ss_pred             EEEeCCHHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHC----CCCEEehhhHhHHH
Confidence            7665 44555666677766643  4443  23445566666554    33345444444433

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=91.02  E-value=0.45  Score=45.81  Aligned_cols=97  Identities=22%  Similarity=0.260  Sum_probs=61.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC----------------CCc----chhhhh-cCcCCCCccee---
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGE----DIGMVC-DMEQPLEIPVM---   91 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~----d~~~~~-g~~~~~gv~v~---   91 (300)
                      -.|.|+|| |+.|.-.+..+.. .++-=.|++|.+.                .|+    .+..++ .+.+...|..|   
T Consensus        67 s~VLVVGa-GGLGcPa~~YLaa-aGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~  144 (427)
T KOG2017|consen   67 SSVLVVGA-GGLGCPAAQYLAA-AGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEF  144 (427)
T ss_pred             ccEEEEcc-CCCCCHHHHHHHH-cCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhh
Confidence            56999999 9999999998774 5666677777321                111    111111 11111222222   


Q ss_pred             ---cCHHHHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-CC
Q 022250           92 ---SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI  140 (300)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G~  140 (300)
                         ++..+++      ...|||.|+|..-.+ +-.-..|.-.|+|+|+|+- +|
T Consensus       145 L~~sNa~~Ii------~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~  192 (427)
T KOG2017|consen  145 LSSSNAFDII------KQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRW  192 (427)
T ss_pred             ccchhHHHHh------hccceEEEcCCCccchhhhhhHHHHcCCcccccccccc
Confidence               3555666      479999999954444 5556789999999999975 44

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=90.96  E-value=1.1  Score=40.17  Aligned_cols=83  Identities=20%  Similarity=0.291  Sum_probs=51.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      |+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+.              .+++-+    .... -+..|.+
T Consensus         1 m~vlItGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~--------------~~~l~~----~~~~~~~~~Dv~   58 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLK-KGARVVI-SSRNE--ENLEKA--------------LKELKE----YGEVYAVKADLS   58 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHH-cCCEEEE-EeCCH--HHHHHH--------------HHHHHh----cCCceEEEcCCC
Confidence            5899999999999999999875 5777654 34432  111110              011110    0112 2456788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        59 d~~~~~~~~~~~~~~~g~id~li~naG~   86 (259)
T PRK08340         59 DKDDLKNLVKEAWELLGGIDALVWNAGN   86 (259)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            888887777766553  58888876664

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.92  E-value=7.9  Score=38.16  Aligned_cols=120  Identities=13%  Similarity=0.142  Sum_probs=63.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC-CCcceec--CHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~~--dl~~~l~~~~~~~~~DVVID  112 (300)
                      =-|+|+|. |+.|..+++.+. ..++++++ .|..........+.   .. .|++++.  .-.+.+      .++|+||-
T Consensus         7 ~~~~v~G~-G~sG~s~a~~L~-~~G~~v~~-~D~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~------~~~d~vV~   74 (448)
T PRK03803          7 GLHIVVGL-GKTGLSVVRFLA-RQGIPFAV-MDSREQPPGLDTLA---REFPDVELRCGGFDCELL------VQASEIII   74 (448)
T ss_pred             CeEEEEee-cHhHHHHHHHHH-hCCCeEEE-EeCCCCchhHHHHH---hhcCCcEEEeCCCChHHh------cCCCEEEE
Confidence            45999998 999999888766 56887664 77432111111221   11 3666642  122334      36898874


Q ss_pred             cCC-chhHHHHHHHHHHcCCCEE--------------EeCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250          113 FTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIG  168 (300)
Q Consensus       113 fT~-p~~~~~~~~~al~~G~~vV--------------igTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiG  168 (300)
                      -+. |.. .+.+..|.+.|+|++              |+-||-+-.  -...|..+-++.+..++...|+...
T Consensus        75 sp~i~~~-~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p  146 (448)
T PRK03803         75 SPGLALD-TPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP  146 (448)
T ss_pred             CCCCCCC-CHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence            331 332 334555556666554              333442211  1223444445556677888885444

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=90.91  E-value=1  Score=42.94  Aligned_cols=25  Identities=20%  Similarity=0.486  Sum_probs=21.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR   59 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~   59 (300)
                      ++||+|+|++|.+|+.++-.+...+
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~   27 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGE   27 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCC
Confidence            4899999988999999998877543

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK09135 pteridine reductase; Provisional

Probab=90.91  E-value=10  Score=33.14  Aligned_cols=172  Identities=17%  Similarity=0.128  Sum_probs=89.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++++..+..  .....+.           ..+.+.-.     .... +.+|.+
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~-~g~~v~~~~r~~~--~~~~~~~-----------~~~~~~~~-----~~~~~~~~Dl~   67 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHA-AGYRVAIHYHRSA--AEADALA-----------AELNALRP-----GSAAALQADLL   67 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHHH-----------HHHHhhcC-----CceEEEEcCCC
Confidence            5799999999999999999885 5888876543221  0001000           00000000     0111 345778


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCCCH------HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCe
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV  186 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~~~------e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~di  186 (300)
                      .++.....+..+.+.  ++.+|+-..|...      ...+.+++         .+..|+.--+++++.+...+.+...-+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~---------~~~~n~~g~~~l~~~~~~~~~~~~~~~  138 (249)
T PRK09135         68 DPDALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDD---------LFASNLKAPFFLSQAAAPQLRKQRGAI  138 (249)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHH---------HHHHhchhHHHHHHHHHHHHhhCCeEE
Confidence            777776666655443  5678887776311      01112222         333566655666665554443221111


Q ss_pred             E-EEEccC---CCCCCCchHHHHHHHHHHh-cCCccccCccccccccccccccCCCeeEEEEEcCCCCeeE
Q 022250          187 E-IVESRP---NARDFPSPDATQIANNLSN-LGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSST  252 (300)
Q Consensus       187 e-IiE~Hh---~K~DaPSGTA~~l~~~i~~-~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H  252 (300)
                      - +...+.   .+...|-|.++..++.+.+ +...+                + ..+.+..+|.|.+.+..
T Consensus       139 ~~~~~~~~~~~~~~~~~Y~~sK~~~~~~~~~l~~~~----------------~-~~i~~~~v~pg~~~~~~  192 (249)
T PRK09135        139 VNITDIHAERPLKGYPVYCAAKAALEMLTRSLALEL----------------A-PEVRVNAVAPGAILWPE  192 (249)
T ss_pred             EEEeChhhcCCCCCchhHHHHHHHHHHHHHHHHHHH----------------C-CCCeEEEEEeccccCcc
Confidence            1 112222   2334456777766665443 11100                1 24778888888876654

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=90.90  E-value=1.3  Score=43.52  Aligned_cols=135  Identities=20%  Similarity=0.243  Sum_probs=76.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCc-------CCCCcceecCHHHHHhccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSIS  102 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~-------~~~gv~v~~dl~~~l~~~~  102 (300)
                      -.||+|-|. |+.|+..++.+.+. +.+||++-|+.     ..|-|...+....       ...+....++ ++++.   
T Consensus       207 G~rVaVQG~-GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~---  280 (411)
T COG0334         207 GARVAVQGF-GNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLE---  280 (411)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccc---
Confidence            479999997 99999999988765 99999988852     3455543332111       0112222222 66665   


Q ss_pred             ccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---HHHH-HHHH
Q 022250          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GSIL-LQQA  175 (300)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv~l-l~~~  175 (300)
                        .++|+++=+...... .+++.....   .+|.|-. + .+++..+.+.    ++  .|++.|-+-.   ||.. -.+.
T Consensus       281 --~~cDIl~PcA~~n~I~~~na~~l~a---k~V~EgAN~P~t~eA~~i~~----er--GIl~~PD~laNAGGV~vS~~E~  349 (411)
T COG0334         281 --VDCDILIPCALENVITEDNADQLKA---KIVVEGANGPTTPEADEILL----ER--GILVVPDILANAGGVIVSYLEW  349 (411)
T ss_pred             --ccCcEEcccccccccchhhHHHhhh---cEEEeccCCCCCHHHHHHHH----HC--CCEEcChhhccCcCeeeehHHH
Confidence              689999866544443 444443333   3777755 4 4443323332    43  4677776532   2211 1344


Q ss_pred             HHHhccCCCCe
Q 022250          176 AISASFHYKNV  186 (300)
Q Consensus       176 a~~~~~~~~di  186 (300)
                      ++....++|+-
T Consensus       350 ~qn~~~~~wt~  360 (411)
T COG0334         350 VQNAQGLYWTE  360 (411)
T ss_pred             HhhcccCccCH
Confidence            54444445543

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=90.84  E-value=0.76  Score=42.07  Aligned_cols=56  Identities=16%  Similarity=0.181  Sum_probs=36.7

Q ss_pred             EEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        40 V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |.|++|-+|+.+++.+.+. +.+++.+.....              ..+.-.++++++++.    .++|+||.+.
T Consensus         2 ItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~~--------------~Dl~~~~~l~~~~~~----~~~d~Vih~A   57 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEAL-GFTNLVLRTHKE--------------LDLTRQADVEAFFAK----EKPTYVILAA   57 (306)
T ss_pred             cccCCCcccHHHHHHHHhC-CCcEEEeecccc--------------CCCCCHHHHHHHHhc----cCCCEEEEee
Confidence            7899999999999998764 566554433211              112223456666652    4689999985

>PRK06199 ornithine cyclodeaminase; Validated

Probab=90.76  E-value=0.55  Score=45.84  Aligned_cols=93  Identities=13%  Similarity=0.183  Sum_probs=59.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhc-CcCCC----CcceecCHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL----EIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~----gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      -+++|+|+ |.+++.+++++.. .|+++=+-+++++.  ..+..++. +...+    .+.+.+|.++++.      ++||
T Consensus       156 ~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~--~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~------~ADI  226 (379)
T PRK06199        156 KVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQ--KSLDSFATWVAETYPQITNVEVVDSIEEVVR------GSDI  226 (379)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCCceEEEeCCHHHHHc------CCCE
Confidence            57999997 9999999999876 45688888888753  22222210 00122    2556789999984      7999


Q ss_pred             EEEcCCchh----HHHHH-HHHHHcCCCEE-EeC
Q 022250          110 VIDFTDAST----VYDNV-KQATAFGMRSV-VYV  137 (300)
Q Consensus       110 VIDfT~p~~----~~~~~-~~al~~G~~vV-igT  137 (300)
                      |+=+|+...    ....+ ...++.|.+|. +|+
T Consensus       227 VvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~  260 (379)
T PRK06199        227 VTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAA  260 (379)
T ss_pred             EEEccCCCCCCCCcCcEecHHHcCCCcEEecCCc
Confidence            986664211    11222 34567888876 443

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=90.74  E-value=1.2  Score=42.34  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=41.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .+|+|+|. |+||+.+++.+.. -++++.+ +|+..  +...   +. .  .+.-..++++++.      .+|+|+...
T Consensus       137 ~tvgIvG~-G~IG~~vA~~l~a-fG~~V~~-~~~~~--~~~~---~~-~--~~~~~~~l~e~l~------~aDvvv~~l  198 (312)
T PRK15469        137 FTIGILGA-GVLGSKVAQSLQT-WGFPLRC-WSRSR--KSWP---GV-Q--SFAGREELSAFLS------QTRVLINLL  198 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCC--CCCC---Cc-e--eecccccHHHHHh------cCCEEEECC
Confidence            68999997 9999999998874 5888875 56432  1100   00 0  0112358899984      789998554

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.73  E-value=2.2  Score=37.42  Aligned_cols=86  Identities=23%  Similarity=0.209  Sum_probs=52.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      +.+|.|+|++|.+|+.+++.+.+ .+++++..++++.  .....+.               +.+..  ....+. +..|+
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~-~g~~v~~~~~r~~--~~~~~~~---------------~~~~~--~~~~~~~~~~D~   64 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAK-EGAKVVIAYDINE--EAAQELL---------------EEIKE--EGGDAIAVKADV   64 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHHH---------------HHHHh--cCCeEEEEECCC
Confidence            46899999999999999998874 5788876545432  1111110               11110  001222 34578


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      +.++.+.+.+....+.  ++++|+-..|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~   93 (247)
T PRK05565         65 SSEEDVENLVEQIVEKFGKIDILVNNAGI   93 (247)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence            8888777766655443  68888877654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=90.68  E-value=1.6  Score=39.50  Aligned_cols=87  Identities=21%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcE--EEEEEecCC---CCcc------hhhhhcCcCCCC-cceecCHHHHHhcccc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHS---VGED------IGMVCDMEQPLE-IPVMSDLTMVLGSISQ  103 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e--Lvg~vd~~~---~g~d------~~~~~g~~~~~g-v~v~~dl~~~l~~~~~  103 (300)
                      .||.|+|+ |.+|+.+++.+.. .++.  =+.++|++.   ..+.      ..+++   .+.+ -....++.+.+.    
T Consensus        26 ~rvlvlGA-GgAg~aiA~~L~~-~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~~~~~l~~~l~----   96 (226)
T cd05311          26 VKIVINGA-GAAGIAIARLLLA-AGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEKTGGTLKEALK----   96 (226)
T ss_pred             CEEEEECc-hHHHHHHHHHHHH-cCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCcccCCHHHHHh----
Confidence            58999998 9999999999875 4665  566788651   0110      01122   1111 011136766663    


Q ss_pred             cCCccEEEEcCCchhH-HHHHHHHHHcCCCEEE
Q 022250          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVV  135 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVi  135 (300)
                        ++|++|..|++-.. .+.++...  ..|+|.
T Consensus        97 --~~dvlIgaT~~G~~~~~~l~~m~--~~~ivf  125 (226)
T cd05311          97 --GADVFIGVSRPGVVKKEMIKKMA--KDPIVF  125 (226)
T ss_pred             --cCCEEEeCCCCCCCCHHHHHhhC--CCCEEE
Confidence              68999998864433 23444332  334444

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK08267 short chain dehydrogenase; Provisional

Probab=90.61  E-value=1.7  Score=38.83  Aligned_cols=83  Identities=20%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      |.++.|+|++|.+|+.+++.+.+ .+.+++. ++++.  ....++               .+.+.    ..... +.+|+
T Consensus         1 mk~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~----~~~~~~~~~D~   57 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAA-EGWRVGA-YDINE--AGLAAL---------------AAELG----AGNAWTGALDV   57 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHH-CCCeEEE-EeCCH--HHHHHH---------------HHHhc----CCceEEEEecC
Confidence            35699999999999999999875 5777665 44432  111111               01110    01222 46788


Q ss_pred             CCchhHHHHHHHHHHc---CCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAF---GMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~---G~~vVigTTG~  140 (300)
                      +.++.+.+.+..+.+.   .+++|+-..|.
T Consensus        58 ~~~~~v~~~~~~~~~~~~~~id~vi~~ag~   87 (260)
T PRK08267         58 TDRAAWDAALADFAAATGGRLDVLFNNAGI   87 (260)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence            9888887777766553   67888877653

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=90.55  E-value=1.7  Score=41.08  Aligned_cols=30  Identities=27%  Similarity=0.268  Sum_probs=26.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      +||.|.|++|-+|+.+++.+.+ .+.++++.
T Consensus         5 k~ilItGatG~IG~~l~~~L~~-~G~~V~~~   34 (349)
T TIGR02622         5 KKVLVTGHTGFKGSWLSLWLLE-LGAEVYGY   34 (349)
T ss_pred             CEEEEECCCChhHHHHHHHHHH-CCCEEEEE
Confidence            6899999999999999999885 57887764

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK08017 oxidoreductase; Provisional

Probab=90.55  E-value=4.3  Score=35.97  Aligned_cols=31  Identities=32%  Similarity=0.535  Sum_probs=25.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      +.+|.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~-~g~~v~~~   32 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKR-RGYRVLAA   32 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEE
Confidence            34699999999999999999875 47787654

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=90.54  E-value=4.2  Score=40.65  Aligned_cols=140  Identities=21%  Similarity=0.167  Sum_probs=77.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec--CHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVID  112 (300)
                      ++||+|+|. |+-|...++.+.+ .+.++. +.|....-........  ...++.+..  ...+-+      ..+|+|| 
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~-~G~~v~-v~D~~~~~~~~~~~~~--~~~~i~~~~g~~~~~~~------~~~d~vV-   74 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLK-LGAEVT-VSDDRPAPEGLAAQPL--LLEGIEVELGSHDDEDL------AEFDLVV-   74 (448)
T ss_pred             CCEEEEEec-ccccHHHHHHHHH-CCCeEE-EEcCCCCccchhhhhh--hccCceeecCccchhcc------ccCCEEE-
Confidence            589999997 9999999998875 466655 4663221110000000  123444331  111222      4689887 


Q ss_pred             cCC--chhHHHHHHHHHHcCCCEE---------------EeCCCCCH--HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHH
Q 022250          113 FTD--ASTVYDNVKQATAFGMRSV---------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (300)
Q Consensus       113 fT~--p~~~~~~~~~al~~G~~vV---------------igTTG~~~--e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~  173 (300)
                      .|+  |..+ +.+..|.+.|++++               |+-||-+-  ---..|....++.|.+..++.|...++  +.
T Consensus        75 ~SPGi~~~~-p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~--l~  151 (448)
T COG0771          75 KSPGIPPTH-PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA--LE  151 (448)
T ss_pred             ECCCCCCCC-HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH--HH
Confidence            553  2222 24555555555443               33344321  133567777888889999999988884  22


Q ss_pred             HHHHHhccCCCCeEEEEcc
Q 022250          174 QAAISASFHYKNVEIVESR  192 (300)
Q Consensus       174 ~~a~~~~~~~~dieIiE~H  192 (300)
                      -+.+ .  ..+|+-++|.-
T Consensus       152 ~~~~-~--~~~d~~VlElS  167 (448)
T COG0771         152 LLEQ-A--EPADVYVLELS  167 (448)
T ss_pred             hhcc-c--CCCCEEEEEcc
Confidence            2221 1  23566677753

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.49  E-value=0.43  Score=44.60  Aligned_cols=124  Identities=20%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCC---CcceecCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPL---EIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~---gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      .||.|+|+ |.+|++++..+.. .++.=+-++|++.  ..+..++. +...+   .+..++++.+.+      .++|+||
T Consensus       128 k~vlIlGa-GGaaraia~aL~~-~G~~~I~I~nR~~--~ka~~la~~l~~~~~~~~~~~~~~~~~~~------~~aDiVI  197 (284)
T PRK12549        128 ERVVQLGA-GGAGAAVAHALLT-LGVERLTIFDVDP--ARAAALADELNARFPAARATAGSDLAAAL------AAADGLV  197 (284)
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHHHHHhhCCCeEEEeccchHhhh------CCCCEEE
Confidence            58999998 9999999998875 4554466777643  12222210 00011   111234555555      3789999


Q ss_pred             EcCCchhH----HHHHHHHHHcCCCEE--EeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          112 DFTDASTV----YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       112 DfT~p~~~----~~~~~~al~~G~~vV--igTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      ..|+.-..    ...-...+..+.-++  +-+|--|     .+.+.|+++|.+++-    .+++ |+.|.+.++
T Consensus       198 naTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T-----~ll~~A~~~G~~~~~----G~~M-L~~Qa~~~f  261 (284)
T PRK12549        198 HATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLET-----ELLRAARALGCRTLD----GGGM-AVFQAVDAF  261 (284)
T ss_pred             ECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCC-----HHHHHHHHCCCeEec----CHHH-HHHHHHHHH
Confidence            98853210    000112233332221  2223223     477778888887664    3443 345555554

>PRK05442 malate dehydrogenase; Provisional

Probab=90.48  E-value=1.1  Score=42.89  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=19.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK   57 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~   57 (300)
                      |.||+|+|++|++|..++-.+..
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~   26 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIAS   26 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHh
Confidence            58999999889999999887664

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=90.48  E-value=2.2  Score=39.66  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=25.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      -+|.|+|++|.+|+..++.+. ..+.++++...
T Consensus       140 ~~VLI~ga~g~vG~~aiqlAk-~~G~~Vi~~~~  171 (325)
T TIGR02825       140 ETVMVNAAAGAVGSVVGQIAK-LKGCKVVGAAG  171 (325)
T ss_pred             CEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeC
Confidence            369999988999999998765 56888776554

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=90.47  E-value=1.1  Score=46.58  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=25.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ..||.|+|| |..|..+++.+.. -++.=+.++|
T Consensus       338 ~~kVLIvGa-GGLGs~VA~~La~-~GVg~ItlVD  369 (664)
T TIGR01381       338 QLKVLLLGA-GTLGCNVARCLIG-WGVRHITFVD  369 (664)
T ss_pred             cCeEEEECC-cHHHHHHHHHHHH-cCCCeEEEEc
Confidence            368999999 9999999998875 4655455566

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=90.45  E-value=0.62  Score=44.28  Aligned_cols=91  Identities=12%  Similarity=0.073  Sum_probs=60.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      -+++|+|+ |..++.+++++..-..++=+-+++++.  ..+..++......+  +.+.+|.++++.      ++|+|+-.
T Consensus       129 ~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIV~ta  199 (315)
T PRK06823        129 SAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSE--TALEEYRQYAQALGFAVNTTLDAAEVAH------AANLIVTT  199 (315)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhcCCcEEEECCHHHHhc------CCCEEEEe
Confidence            57999997 999999999998877888888888653  22222221101223  444688999884      89999966


Q ss_pred             CCc-hhHHHHHHHHHHcCCCEE-EeC
Q 022250          114 TDA-STVYDNVKQATAFGMRSV-VYV  137 (300)
Q Consensus       114 T~p-~~~~~~~~~al~~G~~vV-igT  137 (300)
                      |+. +.+.+  ...++.|.+|. ||+
T Consensus       200 T~s~~P~~~--~~~l~~G~hi~~iGs  223 (315)
T PRK06823        200 TPSREPLLQ--AEDIQPGTHITAVGA  223 (315)
T ss_pred             cCCCCceeC--HHHcCCCcEEEecCC
Confidence            632 22221  23567888877 554

>PRK07904 short chain dehydrogenase; Provisional

Probab=90.43  E-value=2.7  Score=37.93  Aligned_cols=88  Identities=14%  Similarity=0.057  Sum_probs=51.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDf  113 (300)
                      ..+|.|.|++|++|+.+++.+.+..+..++.. +++.. ....++.              +++...  ...+. -+-.|.
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~-~r~~~-~~~~~~~--------------~~l~~~--~~~~v~~~~~D~   69 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPARVVLA-ALPDD-PRRDAAV--------------AQMKAA--GASSVEVIDFDA   69 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEE-eCCcc-hhHHHHH--------------HHHHhc--CCCceEEEEecC
Confidence            35799999999999999999887656777754 43320 0011110              111110  00011 134677


Q ss_pred             CCchhHHHHHHHHHHc-CCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAF-GMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~-G~~vVigTTG~  140 (300)
                      +.++...+.+..+.+. ++++++-..|.
T Consensus        70 ~~~~~~~~~~~~~~~~g~id~li~~ag~   97 (253)
T PRK07904         70 LDTDSHPKVIDAAFAGGDVDVAIVAFGL   97 (253)
T ss_pred             CChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence            8888777777766653 58877755553

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=90.35  E-value=1.6  Score=43.83  Aligned_cols=64  Identities=14%  Similarity=0.175  Sum_probs=40.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |++|+.+++.+.. -+++++ +++.+..  .....    ...|+. +.+++++++      .+|+||..+
T Consensus       254 GKtVgVIG~-G~IGr~vA~rL~a-~Ga~Vi-V~e~dp~--~a~~A----~~~G~~-~~~leell~------~ADIVI~at  317 (476)
T PTZ00075        254 GKTVVVCGY-GDVGKGCAQALRG-FGARVV-VTEIDPI--CALQA----AMEGYQ-VVTLEDVVE------TADIFVTAT  317 (476)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCch--hHHHH----HhcCce-eccHHHHHh------cCCEEEECC
Confidence            368999998 9999999998874 577754 4554321  11010    012332 236778774      689888653

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.35  E-value=1.2  Score=44.35  Aligned_cols=138  Identities=14%  Similarity=0.137  Sum_probs=72.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCc--ch-hhhhcCcCCCCccee--cCHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~-~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      .||+|+|. |+.|+.+++.+. ..++++.+ .|......  +. ..+    .+.|+.++  .+..+.+      .++|+|
T Consensus        15 ~~i~v~G~-G~sG~a~a~~L~-~~G~~V~~-~D~~~~~~~~~~~~~l----~~~gi~~~~~~~~~~~~------~~~dlV   81 (458)
T PRK01710         15 KKVAVVGI-GVSNIPLIKFLV-KLGAKVTA-FDKKSEEELGEVSNEL----KELGVKLVLGENYLDKL------DGFDVI   81 (458)
T ss_pred             CeEEEEcc-cHHHHHHHHHHH-HCCCEEEE-ECCCCCccchHHHHHH----HhCCCEEEeCCCChHHh------ccCCEE
Confidence            58999997 999999999876 46777654 67432101  00 111    23465553  2223434      368988


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEE--------------eCCCCCHH--HHHHHHHHhhhCCCeEEEcCCCcHHHHHHHH
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVV--------------YVPHIQLE--TVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVi--------------gTTG~~~e--~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~  174 (300)
                      |--..-....+.+..|.+.|+|++.              +-||-+-.  -...|..+-+..+.......|  +|+.++..
T Consensus        82 V~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn--iG~p~~~~  159 (458)
T PRK01710         82 FKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFSN  159 (458)
T ss_pred             EECCCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc--cChhHHHH
Confidence            7432112234556666667666553              22332210  112233444445555556677  56665533


Q ss_pred             HHHHhccCCCCeEEEEc
Q 022250          175 AAISASFHYKNVEIVES  191 (300)
Q Consensus       175 ~a~~~~~~~~dieIiE~  191 (300)
                      +. ...  ..|+-|+|.
T Consensus       160 ~~-~~~--~~~~~VlE~  173 (458)
T PRK01710        160 IE-EIK--EEDKVVLEL  173 (458)
T ss_pred             Hh-hCC--CCCEEEEEc
Confidence            22 221  245667775

>PLN02928 oxidoreductase family protein

Probab=90.35  E-value=0.83  Score=43.99  Aligned_cols=68  Identities=13%  Similarity=0.051  Sum_probs=42.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC--------cCCCCcceecCHHHHHhcccccCC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM--------EQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~--------~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      -.+|+|+|+ |+||+.+++.+. .=++++++ +|+... .+.....+.        ....+  .+.++++++.      .
T Consensus       159 gktvGIiG~-G~IG~~vA~~l~-afG~~V~~-~dr~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~L~ell~------~  226 (347)
T PLN02928        159 GKTVFILGY-GAIGIELAKRLR-PFGVKLLA-TRRSWT-SEPEDGLLIPNGDVDDLVDEKG--GHEDIYEFAG------E  226 (347)
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-hCCCEEEE-ECCCCC-hhhhhhhccccccccccccccC--cccCHHHHHh------h
Confidence            368999997 999999999887 45888876 564310 110000000        00011  3568999995      7


Q ss_pred             ccEEEEcC
Q 022250          107 RAVVIDFT  114 (300)
Q Consensus       107 ~DVVIDfT  114 (300)
                      +|+|+-..
T Consensus       227 aDiVvl~l  234 (347)
T PLN02928        227 ADIVVLCC  234 (347)
T ss_pred             CCEEEECC
Confidence            89998554

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=90.33  E-value=3.7  Score=36.54  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      |+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .++..               +.+.+.     .++. +-.|++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~---------------~~~~~~-----~~~~~~~~Dl~   56 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQ-QGHKVIA-TGRRQ--ERLQE---------------LKDELG-----DNLYIAQLDVR   56 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EECCH--HHHHH---------------HHHHhc-----cceEEEEecCC
Confidence            5799999999999999999885 5788765 44432  11111               011111     1222 346788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+....+.  ++.+|+-..|.
T Consensus        57 ~~~~i~~~~~~~~~~~~~id~vi~~ag~   84 (248)
T PRK10538         57 NRAAIEEMLASLPAEWRNIDVLVNNAGL   84 (248)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            888777766655443  68888866553

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=90.33  E-value=1.7  Score=39.88  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=24.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      ||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 kvlV~GatG~iG~~l~~~l~~-~g~~V~~~   29 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLE-SGHEVVVL   29 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHh-CCCeEEEE
Confidence            689999999999999999875 46777653

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=90.32  E-value=0.76  Score=42.16  Aligned_cols=69  Identities=19%  Similarity=0.223  Sum_probs=41.0

Q ss_pred             EEEEcCCchHHHHHHHHHHhcC--C-cEEEEEEecCC---CC--cchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           38 VIINGAVKEIGRAAVIAVTKAR--G-MEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~--~-~eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      |+|+|+.|.||..++..+...+  . .+| ..+|.+.   .+  .|............+..++|+++.+      .++|+
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el-~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~------~~aDi   73 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIEL-VLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAF------KDADV   73 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEE-EEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHh------CCCCE
Confidence            6899988999999999887654  2 344 4567532   11  1222222110022444557777777      48999


Q ss_pred             EEEc
Q 022250          110 VIDF  113 (300)
Q Consensus       110 VIDf  113 (300)
                      ||..
T Consensus        74 Vv~t   77 (263)
T cd00650          74 VIIT   77 (263)
T ss_pred             EEEC
Confidence            9863

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK09134 short chain dehydrogenase; Provisional

Probab=90.28  E-value=5.2  Score=35.72  Aligned_cols=86  Identities=19%  Similarity=0.294  Sum_probs=51.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      ..++.|.|++|.+|+.+++.+.+ .+..++....++.  .....+.              +++...   ....+ +..|.
T Consensus         9 ~k~vlItGas~giG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dl   68 (258)
T PRK09134          9 PRAALVTGAARRIGRAIALDLAA-HGFDVAVHYNRSR--DEAEALA--------------AEIRAL---GRRAVALQADL   68 (258)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHHH--------------HHHHhc---CCeEEEEEcCC
Confidence            46899999999999999999874 5778776554321  0111000              111100   01222 34577


Q ss_pred             CCchhHHHHHHHHHH--cCCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATA--FGMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~--~G~~vVigTTG~  140 (300)
                      +.++...+.+..+.+  -++.+|+-..|.
T Consensus        69 ~d~~~~~~~~~~~~~~~~~iD~vi~~ag~   97 (258)
T PRK09134         69 ADEAEVRALVARASAALGPITLLVNNASL   97 (258)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence            877777776666554  247888777664

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=90.28  E-value=1.6  Score=42.83  Aligned_cols=129  Identities=16%  Similarity=0.147  Sum_probs=77.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhh-hhcCcCCCCcceecCHHHHHh
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGM-VCDMEQPLEIPVMSDLTMVLG   99 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------~~g~------d~~~-~~g~~~~~gv~v~~dl~~~l~   99 (300)
                      |..+|+|+|- |-+|--++-+.+ ..++.++| +|.+       ..|+      +..+ +...-.......++|.+++  
T Consensus         8 ~~~~I~ViGL-GYVGLPlA~~fA-~~G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l--   82 (436)
T COG0677           8 MSATIGVIGL-GYVGLPLAAAFA-SAGFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL--   82 (436)
T ss_pred             CceEEEEEcc-ccccHHHHHHHH-HcCCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc--
Confidence            3489999997 999999998766 56899988 4421       1121      1111 0000011224566677666  


Q ss_pred             cccccCCccEEEEcCC-------------chhHHHHHHHHHHcCCCEEEeCC---CCCHHHHHHHHHH-h---hhCCCeE
Q 022250          100 SISQSKARAVVIDFTD-------------ASTVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAF-C---DKASMGC  159 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~-------------p~~~~~~~~~al~~G~~vVigTT---G~~~e~~~~L~~~-a---~~~~i~i  159 (300)
                           ..+|++|.+-+             -+.+.+.+...++.|-=||+++|   |-+++-..-|.+. .   --....+
T Consensus        83 -----~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l  157 (436)
T COG0677          83 -----KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL  157 (436)
T ss_pred             -----ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence                 47899887632             23344556677889999999987   6777655555543 1   1123667


Q ss_pred             EEcCCCcHHHHHH
Q 022250          160 LIAPTLSIGSILL  172 (300)
Q Consensus       160 v~a~N~SiGv~ll  172 (300)
                      .|||-=-.-.|.+
T Consensus       158 aysPERv~PG~~~  170 (436)
T COG0677         158 AYSPERVLPGNVL  170 (436)
T ss_pred             eeCccccCCCchh
Confidence            7777544434433

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=90.27  E-value=2.7  Score=37.22  Aligned_cols=88  Identities=18%  Similarity=0.198  Sum_probs=51.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCHH-HHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLT-MVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~-~~l~~~~~~~~~DVVIDf  113 (300)
                      .||.|+|+ |+||...++.+.+ .+.+++ ++++.. .+.+.+++   ....+... ..++ +.+      .++|+||-+
T Consensus        11 k~vLVIGg-G~va~~ka~~Ll~-~ga~V~-VIs~~~-~~~l~~l~---~~~~i~~~~~~~~~~~l------~~adlViaa   77 (202)
T PRK06718         11 KRVVIVGG-GKVAGRRAITLLK-YGAHIV-VISPEL-TENLVKLV---EEGKIRWKQKEFEPSDI------VDAFLVIAA   77 (202)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCeEE-EEcCCC-CHHHHHHH---hCCCEEEEecCCChhhc------CCceEEEEc
Confidence            68999998 9999999988875 456655 444432 12222332   11122221 1222 223      478999888


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEe
Q 022250          114 TDASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVig  136 (300)
                      |..+.....+...++.++.+-+.
T Consensus        78 T~d~elN~~i~~~a~~~~lvn~~  100 (202)
T PRK06718         78 TNDPRVNEQVKEDLPENALFNVI  100 (202)
T ss_pred             CCCHHHHHHHHHHHHhCCcEEEC
Confidence            86666655554444777766554

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=90.14  E-value=2.4  Score=39.49  Aligned_cols=124  Identities=13%  Similarity=0.045  Sum_probs=66.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (300)
                      +|.|+|+ |.+|...++.++ ..+.+.+.++|...  ... +.++   ...  +++. ++..     ...+|++||++-.
T Consensus       147 ~vlV~G~-G~vG~~a~q~ak-~~G~~~v~~~~~~~--~rl-~~a~---~~~--~i~~-~~~~-----~~g~Dvvid~~G~  210 (308)
T TIGR01202       147 PDLIVGH-GTLGRLLARLTK-AAGGSPPAVWETNP--RRR-DGAT---GYE--VLDP-EKDP-----RRDYRAIYDASGD  210 (308)
T ss_pred             cEEEECC-CHHHHHHHHHHH-HcCCceEEEeCCCH--HHH-Hhhh---hcc--ccCh-hhcc-----CCCCCEEEECCCC
Confidence            6999997 999999998766 45777666666432  111 1111   111  1221 1111     1468999999975


Q ss_pred             hh-HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhcc
Q 022250          117 ST-VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF  181 (300)
Q Consensus       117 ~~-~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~  181 (300)
                      .. ....+......|+=+++|.++-.. +.....-..+  ++.+..+.+++  -..+.++.+.+..
T Consensus       211 ~~~~~~~~~~l~~~G~iv~~G~~~~~~-~~~~~~~~~~--~~~i~~~~~~~--~~~~~~~~~l~~~  271 (308)
T TIGR01202       211 PSLIDTLVRRLAKGGEIVLAGFYTEPV-NFDFVPAFMK--EARLRIAAEWQ--PGDLHAVRELIES  271 (308)
T ss_pred             HHHHHHHHHhhhcCcEEEEEeecCCCc-ccccchhhhc--ceEEEEecccc--hhHHHHHHHHHHc
Confidence            44 455556666677777788653211 1111111222  35555444433  2356666666654

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=90.09  E-value=2.4  Score=44.02  Aligned_cols=32  Identities=13%  Similarity=0.159  Sum_probs=27.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc-CCcEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA   66 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~   66 (300)
                      ++||.|.|++|-+|+.+++.+.+. ++.++++.
T Consensus         6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~   38 (668)
T PLN02260          6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVL   38 (668)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence            579999999999999999999865 47888754

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=90.06  E-value=0.9  Score=41.88  Aligned_cols=128  Identities=15%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCH--HHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl--~~~l~~~~~~~~~DVVID  112 (300)
                      .+||++.||.|-.|+.+++++..+|-+|+.-+-.+...|+....+.    ...+ .|.|+  .++.. +.+....|.++ 
T Consensus        19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~yt----k~ei-qy~~lst~D~~k-lee~~avd~wv-   91 (340)
T KOG4354|consen   19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYT----KLEI-QYADLSTVDAVK-LEEPHAVDHWV-   91 (340)
T ss_pred             CceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcc----hhhe-eecccchhhHHH-hhcCCceeeee-
Confidence            5999999999999999999999999999987766655555443222    1111 12221  11111 01123445555 


Q ss_pred             cCCchhHHHHHHHH--HHcCCCEEEeCC-------------CCCH-HHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          113 FTDASTVYDNVKQA--TAFGMRSVVYVP-------------HIQL-ETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       113 fT~p~~~~~~~~~a--l~~G~~vVigTT-------------G~~~-e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      |..|..+.+-...+  ..+|+..+|--.             |+++ -+.+.|+.+.+-.+ |-.|+..-.++..
T Consensus        92 maLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~na~~iaN-PGCYaTgsQl~l~  164 (340)
T KOG4354|consen   92 MALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKNARLIAN-PGCYATGSQLPLV  164 (340)
T ss_pred             eecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHhhhhhccC-CCcccccCcccch
Confidence            66676664433322  235665555421             2221 12345666655443 5566666666644

>PRK15076 alpha-galactosidase; Provisional

Probab=90.03  E-value=5.7  Score=39.47  Aligned_cols=156  Identities=14%  Similarity=0.149  Sum_probs=82.1

Q ss_pred             cceEEEEcCCchHHHHH--HHHHHh---cCCcEEEEEEecCCCCcc-hhh----hh-cCcCCCCcceecCHHHHHhcccc
Q 022250           35 NIKVIINGAVKEIGRAA--VIAVTK---ARGMEVAGAIDSHSVGED-IGM----VC-DMEQPLEIPVMSDLTMVLGSISQ  103 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i--~~~i~~---~~~~eLvg~vd~~~~g~d-~~~----~~-g~~~~~gv~v~~dl~~~l~~~~~  103 (300)
                      |+||+|+|+ |.||-..  ++.+..   .++.|| ..+|.+..-.+ +..    .+ -......+..++|+.+++     
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~ev-vLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal-----   73 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEI-ALMDIDPERLEESEIVARKLAESLGASAKITATTDRREAL-----   73 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEE-EEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHh-----
Confidence            479999998 9998443  234432   233454 46775320001 111    11 000123345567888887     


Q ss_pred             cCCccEEEEcCCch--hHH--HHHHHHHHcCCCE-EEeCCC---C-----CHHH----HHHHHHHhhhCCCeEEEcCCCc
Q 022250          104 SKARAVVIDFTDAS--TVY--DNVKQATAFGMRS-VVYVPH---I-----QLET----VSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       104 ~~~~DVVIDfT~p~--~~~--~~~~~al~~G~~v-VigTTG---~-----~~e~----~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                       .++|+||......  ...  .--+-.+++|+-- +..|+|   +     +-..    .+.|++.|-+   .+++  |||
T Consensus        74 -~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~---a~ii--n~t  147 (431)
T PRK15076         74 -QGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPD---ALLL--NYV  147 (431)
T ss_pred             -CCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCC---eEEE--EcC
Confidence             4789998755432  112  3446778999863 224542   2     2222    2333333322   3333  666


Q ss_pred             HHHHHHHHHHHHhccCCCCeEEEEccCCCCCCCchHHHHHHHHHH
Q 022250          167 IGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLS  211 (300)
Q Consensus       167 iGv~ll~~~a~~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~i~  211 (300)
                      =-+.++.+++.   ++ +...++=.    =|.|.+|+..+++.+.
T Consensus       148 NP~divt~~~~---~~-~~~rviG~----c~~~~~~~~~ia~~l~  184 (431)
T PRK15076        148 NPMAMNTWAMN---RY-PGIKTVGL----CHSVQGTAEQLARDLG  184 (431)
T ss_pred             ChHHHHHHHHh---cC-CCCCEEEE----CCCHHHHHHHHHHHhC
Confidence            66667766665   22 33344444    3568889988888763

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.94  E-value=2.4  Score=36.97  Aligned_cols=85  Identities=20%  Similarity=0.248  Sum_probs=49.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      +.+|.|+|++|.+|+.+++.+.+ .+.+++.+..++.  .....               +.+.+..  ...... +..|+
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~-~g~~v~~~~~~~~--~~~~~---------------~~~~~~~--~~~~~~~~~~D~   65 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLAR-AGADVVVHYRSDE--EAAEE---------------LVEAVEA--LGRRAQAVQADV   65 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCCH--HHHHH---------------HHHHHHh--cCCceEEEECCc
Confidence            46899999999999999998875 5777765454321  11110               0111110  001222 34577


Q ss_pred             CCchhHHHHHHHHHH--cCCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATA--FGMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~--~G~~vVigTTG  139 (300)
                      +.++...+.+....+  .++.+|+=..|
T Consensus        66 ~~~~~v~~~~~~~~~~~~~id~vi~~ag   93 (249)
T PRK12825         66 TDKAALEAAVAAAVERFGRIDILVNNAG   93 (249)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            777777666654443  36788877665

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=89.92  E-value=1.1  Score=42.57  Aligned_cols=60  Identities=17%  Similarity=0.113  Sum_probs=42.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |++|+.+++.+.. =++++.+ +|+..  ...        ..+++ +.++++++.      .+|+|+-..
T Consensus       145 gktvGIiG~-G~IG~~vA~~~~~-fgm~V~~-~d~~~--~~~--------~~~~~-~~~l~ell~------~sDvv~lh~  204 (311)
T PRK08410        145 GKKWGIIGL-GTIGKRVAKIAQA-FGAKVVY-YSTSG--KNK--------NEEYE-RVSLEELLK------TSDIISIHA  204 (311)
T ss_pred             CCEEEEECC-CHHHHHHHHHHhh-cCCEEEE-ECCCc--ccc--------ccCce-eecHHHHhh------cCCEEEEeC
Confidence            478999997 9999999998764 4888775 56532  110        11222 468999995      789998655

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=89.90  E-value=4  Score=36.04  Aligned_cols=82  Identities=15%  Similarity=0.084  Sum_probs=51.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE---EEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---VIDf  113 (300)
                      .+.|.|++|.+|+.+++.+.+ .+.+++...++..  ....+.              ++++-.     ...++   ..|.
T Consensus         5 ~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~~~~--~~~~~~--------------~~~~~~-----~~~~~~~~~~D~   62 (246)
T PRK12938          5 IAYVTGGMGGIGTSICQRLHK-DGFKVVAGCGPNS--PRRVKW--------------LEDQKA-----LGFDFIASEGNV   62 (246)
T ss_pred             EEEEECCCChHHHHHHHHHHH-cCCEEEEEcCCCh--HHHHHH--------------HHHHHh-----cCCcEEEEEcCC
Confidence            479999999999999999985 4778776544321  000000              111111     12233   3678


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      +.++...+.+..+.+.  ++++|+=+.|.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~id~li~~ag~   91 (246)
T PRK12938         63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGI   91 (246)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            8888777766665553  68888877765

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=89.89  E-value=0.46  Score=45.05  Aligned_cols=91  Identities=13%  Similarity=0.112  Sum_probs=50.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      -+++|+|+ |..++.+++++.....++=+-+++++.  ..+..++..-...+  +...+|.++++.      ++|+||=+
T Consensus       129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~v~~~~~~~~av~------~aDii~ta  199 (313)
T PF02423_consen  129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSP--ERAEAFAARLRDLGVPVVAVDSAEEAVR------GADIIVTA  199 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSH--HHHHHHHHHHHCCCTCEEEESSHHHHHT------TSSEEEE-
T ss_pred             ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccCh--hHHHHHHHhhccccccceeccchhhhcc------cCCEEEEc
Confidence            57999997 999999999998765688888888753  22222221111234  445689999984      79999976


Q ss_pred             CCchh---HHHHHHHHHHcCCCEE-EeC
Q 022250          114 TDAST---VYDNVKQATAFGMRSV-VYV  137 (300)
Q Consensus       114 T~p~~---~~~~~~~al~~G~~vV-igT  137 (300)
                      |+...   +.+  ...++.|.++. ||.
T Consensus       200 T~s~~~~P~~~--~~~l~~g~hi~~iGs  225 (313)
T PF02423_consen  200 TPSTTPAPVFD--AEWLKPGTHINAIGS  225 (313)
T ss_dssp             ---SSEEESB---GGGS-TT-EEEE-S-
T ss_pred             cCCCCCCcccc--HHHcCCCcEEEEecC
Confidence            64333   222  23567788776 454

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=89.86  E-value=14  Score=32.88  Aligned_cols=175  Identities=18%  Similarity=0.107  Sum_probs=87.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDf  113 (300)
                      .-+|.|.|++|.+|+.+++.+.+ .+.+++.+ +++.  .......              +++.... ....+ -+..|+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~-~g~~vi~~-~r~~--~~~~~~~--------------~~~~~~~-~~~~~~~~~~D~   62 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAE-EGYRVAVA-DINS--EKAANVA--------------QEINAEY-GEGMAYGFGADA   62 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEE-ECCH--HHHHHHH--------------HHHHHhc-CCceeEEEEccC
Confidence            34699999999999999999885 47887654 4332  1111100              1111000 00012 245678


Q ss_pred             CCchhHHHHHHHHHH--cCCCEEEeCCCCC------HHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCC
Q 022250          114 TDASTVYDNVKQATA--FGMRSVVYVPHIQ------LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKN  185 (300)
Q Consensus       114 T~p~~~~~~~~~al~--~G~~vVigTTG~~------~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~d  185 (300)
                      +.++.....+..+.+  .++++|+=+.|..      +...+.+++..+         .|+---.+++..+.+.+.+...+
T Consensus        63 ~~~~~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~---------~n~~~~~~l~~~~~~~l~~~~~~  133 (259)
T PRK12384         63 TSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQ---------VNLVGYFLCAREFSRLMIRDGIQ  133 (259)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHH---------hccHHHHHHHHHHHHHHHhCCCC
Confidence            888777766665544  3567777766532      111122222222         23222334445555544322211


Q ss_pred             eEEEE--c-c--C-CCCCCCchHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCeeE
Q 022250          186 VEIVE--S-R--P-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSST  252 (300)
Q Consensus       186 ieIiE--~-H--h-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H  252 (300)
                      --|+=  . .  . .....|-++++...+.+.+.   +.++            +.+.+|.|.++|.|.++.+.
T Consensus       134 ~~iv~~ss~~~~~~~~~~~~Y~~sKaa~~~l~~~---la~e------------~~~~gi~v~~v~pg~~~~~~  191 (259)
T PRK12384        134 GRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQS---LALD------------LAEYGITVHSLMLGNLLKSP  191 (259)
T ss_pred             cEEEEecCcccccCCCCCchhHHHHHHHHHHHHH---HHHH------------HHHcCcEEEEEecCCcccch
Confidence            12221  1 1  1 23445667777655444321   0000            01257999999998876543

>PRK06179 short chain dehydrogenase; Provisional

Probab=89.83  E-value=5.4  Score=35.86  Aligned_cols=76  Identities=21%  Similarity=0.306  Sum_probs=48.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  .....                   .      .+. -+..|.+
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~-~g~~V~~~-~r~~--~~~~~-------------------~------~~~~~~~~D~~   55 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLAR-AGYRVFGT-SRNP--ARAAP-------------------I------PGVELLELDVT   55 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCEEEEE-eCCh--hhccc-------------------c------CCCeeEEeecC
Confidence            4699999999999999999875 57887654 3321  00000                   0      011 1455777


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  .+++|+-..|.
T Consensus        56 d~~~~~~~~~~~~~~~g~~d~li~~ag~   83 (270)
T PRK06179         56 DDASVQAAVDEVIARAGRIDVLVNNAGV   83 (270)
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence            777776666655442  46777776654

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=89.80  E-value=2.1  Score=41.84  Aligned_cols=59  Identities=19%  Similarity=0.098  Sum_probs=40.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .+|+|+|+ |+||+.+++.+.. -++++.+ +|+...  ..        . +..-+.+++++++      .+|+|+-..
T Consensus       117 ktvGIIG~-G~IG~~va~~l~a-~G~~V~~-~Dp~~~--~~--------~-~~~~~~~l~ell~------~aDiV~lh~  175 (381)
T PRK00257        117 RTYGVVGA-GHVGGRLVRVLRG-LGWKVLV-CDPPRQ--EA--------E-GDGDFVSLERILE------ECDVISLHT  175 (381)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-ECCccc--cc--------c-cCccccCHHHHHh------hCCEEEEeC
Confidence            67999998 9999999998874 5888875 565321  00        0 1112457888884      688887544

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=89.78  E-value=1  Score=42.66  Aligned_cols=82  Identities=23%  Similarity=0.384  Sum_probs=52.3

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC--cc-EEEEcC
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA--RA-VVIDFT  114 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~--~D-VVIDfT  114 (300)
                      .+|.|+|.++||+.++.+++ .++.++ .+.++.  .....+.              .|+.+    ..+  +. +++|||
T Consensus        52 AVVTGaTDGIGKayA~eLAk-rG~nvv-LIsRt~--~KL~~v~--------------kEI~~----~~~vev~~i~~Dft  109 (312)
T KOG1014|consen   52 AVVTGATDGIGKAYARELAK-RGFNVV-LISRTQ--EKLEAVA--------------KEIEE----KYKVEVRIIAIDFT  109 (312)
T ss_pred             EEEECCCCcchHHHHHHHHH-cCCEEE-EEeCCH--HHHHHHH--------------HHHHH----HhCcEEEEEEEecC
Confidence            46889999999999999985 799954 455542  1111110              12222    123  22 589999


Q ss_pred             CchhHHHHHHHHH-HcCCCEEEeCCCCC
Q 022250          115 DASTVYDNVKQAT-AFGMRSVVYVPHIQ  141 (300)
Q Consensus       115 ~p~~~~~~~~~al-~~G~~vVigTTG~~  141 (300)
                      .++..++.++..+ .-.+-++|=.-|..
T Consensus       110 ~~~~~ye~i~~~l~~~~VgILVNNvG~~  137 (312)
T KOG1014|consen  110 KGDEVYEKLLEKLAGLDVGILVNNVGMS  137 (312)
T ss_pred             CCchhHHHHHHHhcCCceEEEEeccccc
Confidence            9998877776554 44577777666643

>PRK06953 short chain dehydrogenase; Provisional

Probab=89.74  E-value=1.8  Score=37.81  Aligned_cols=79  Identities=20%  Similarity=0.286  Sum_probs=49.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      |.++.|.|++|.+|+.+++.+.+ .+.+++.+ +++.  .+..                  ++..     .... +..|+
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~-~G~~v~~~-~r~~--~~~~------------------~~~~-----~~~~~~~~D~   53 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRA-DGWRVIAT-ARDA--AALA------------------ALQA-----LGAEALALDV   53 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHh-CCCEEEEE-ECCH--HHHH------------------HHHh-----ccceEEEecC
Confidence            35789999999999999999874 58887764 4331  1111                  1111     1111 46678


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      +.++...+.+......++++|+-+.|.
T Consensus        54 ~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953         54 ADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             CCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            887776665444433457888877664

>PLN02650 dihydroflavonol-4-reductase

Probab=89.72  E-value=1.2  Score=42.04  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ..+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~r   37 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR   37 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEEc
Confidence            46899999999999999999885 5788877543

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.69  E-value=6.7  Score=38.67  Aligned_cols=31  Identities=29%  Similarity=0.292  Sum_probs=24.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ||.|+|+ |+.|...++.+. ..+.++. ++|..
T Consensus         2 ~v~viG~-G~sG~s~a~~l~-~~G~~V~-~~D~~   32 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLK-AQGWEVV-VSDRN   32 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECCC
Confidence            7999998 999999988766 5688765 47753

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.68  E-value=1.1  Score=43.79  Aligned_cols=133  Identities=15%  Similarity=0.138  Sum_probs=70.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      -||.|+|. |++|..+++.+.+ .+.++++ +|.............   .   ....+.+...      .++|++|-...
T Consensus         4 ~~i~iiGl-G~~G~slA~~l~~-~G~~V~g-~D~~~~~~~~~~~~~---~---~~~~~~~~~~------~~~dlvV~s~g   68 (418)
T PRK00683          4 QRVVVLGL-GVTGKSIARFLAQ-KGVYVIG-VDKSLEALQSCPYIH---E---RYLENAEEFP------EQVDLVVRSPG   68 (418)
T ss_pred             CeEEEEEE-CHHHHHHHHHHHH-CCCEEEE-EeCCccccchhHHHh---h---hhcCCcHHHh------cCCCEEEECCC
Confidence            47999998 9999999988774 5677554 675321000000000   0   0112222333      35788875543


Q ss_pred             chhHHHHHHHHHHcCCCEEEeC-----------------CCCCH--HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250          116 ASTVYDNVKQATAFGMRSVVYV-----------------PHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigT-----------------TG~~~--e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a  176 (300)
                      .....+.+..|.++|+++|..+                 ||-+-  --...|..+-++.+.+.....|  +|+.++... 
T Consensus        69 i~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gn--iG~p~l~~~-  145 (418)
T PRK00683         69 IKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGN--IGIPILDGM-  145 (418)
T ss_pred             CCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECC--cCHHHHHHh-
Confidence            3444666777777777665432                 22110  0112234444445556666677  666654322 


Q ss_pred             HHhccCCCCeEEEEc
Q 022250          177 ISASFHYKNVEIVES  191 (300)
Q Consensus       177 ~~~~~~~~dieIiE~  191 (300)
                         .  ..++.|+|.
T Consensus       146 ---~--~~~~~V~E~  155 (418)
T PRK00683        146 ---Q--QPGVRVVEI  155 (418)
T ss_pred             ---h--cCCEEEEEe
Confidence               2  146678886

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=89.63  E-value=1.3  Score=41.05  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=27.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~-~g~~V~~~~r   36 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQ-RGYTVKATVR   36 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHH-CCCEEEEEEc
Confidence            5799999999999999999885 5788877653

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.58  E-value=2.6  Score=41.53  Aligned_cols=61  Identities=20%  Similarity=0.102  Sum_probs=42.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |++|+.+++.+.. =++++++ +|+..  ..        ...++....++++++.      .+|+|+-..
T Consensus       151 gktvGIiG~-G~IG~~vA~~~~~-fGm~V~~-~d~~~--~~--------~~~~~~~~~~l~ell~------~sDiVslh~  211 (409)
T PRK11790        151 GKTLGIVGY-GHIGTQLSVLAES-LGMRVYF-YDIED--KL--------PLGNARQVGSLEELLA------QSDVVSLHV  211 (409)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEE-ECCCc--cc--------ccCCceecCCHHHHHh------hCCEEEEcC
Confidence            378999997 9999999998774 5888875 56432  00        0112333468999995      789888654

>PRK07454 short chain dehydrogenase; Provisional

Probab=89.55  E-value=5.6  Score=35.00  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=52.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      |.++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .+..++               .+.+..  ....++ +..|.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~   64 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAK-AGWDLAL-VARSQ--DALEAL---------------AAELRS--TGVKAAAYSIDL   64 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHHHh--CCCcEEEEEccC
Confidence            46799999999999999999875 5777655 45432  111111               111110  001233 35688


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      +.++.....+..+.+.  ++++|+-..|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~   93 (241)
T PRK07454         65 SNPEAIAPGIAELLEQFGCPDVLINNAGM   93 (241)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            8888877777766553  58888877663

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=89.50  E-value=1.1  Score=42.57  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=26.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .||+|+|+ |++|..++-.+...+-..=+..+|.+
T Consensus         7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~   40 (315)
T PRK00066          7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDIN   40 (315)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            69999998 99999999988765544334467753

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=89.44  E-value=2  Score=40.41  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=26.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      +|.|.|++|-+|+.+++.+.+ .+.+++++.
T Consensus         2 ~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~   31 (343)
T TIGR01472         2 IALITGITGQDGSYLAEFLLE-KGYEVHGLI   31 (343)
T ss_pred             eEEEEcCCCcHHHHHHHHHHH-CCCEEEEEe
Confidence            799999999999999999885 478888754

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=89.44  E-value=1.1  Score=41.90  Aligned_cols=95  Identities=14%  Similarity=0.139  Sum_probs=51.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc---cee---cCHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM---SDLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~---~dl~~~l~~~~~~~~~DV  109 (300)
                      -+|.|+|++|.+|+.+++.+. ..+.++++......   ....+..   .+|+   ..+   .++.+.+.+.. ...+|+
T Consensus       153 ~~VlI~Ga~G~vG~~aiqlAk-~~G~~Vi~~~~~~~---~~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~-~~gvd~  224 (338)
T cd08295         153 ETVFVSAASGAVGQLVGQLAK-LKGCYVVGSAGSDE---KVDLLKN---KLGFDDAFNYKEEPDLDAALKRYF-PNGIDI  224 (338)
T ss_pred             CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHH---HHHHHHH---hcCCceeEEcCCcccHHHHHHHhC-CCCcEE
Confidence            369999999999999998665 56888776554321   1111100   0221   111   13333332111 135788


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      ++|++......+.+......|.=+.+|.+
T Consensus       225 v~d~~g~~~~~~~~~~l~~~G~iv~~G~~  253 (338)
T cd08295         225 YFDNVGGKMLDAVLLNMNLHGRIAACGMI  253 (338)
T ss_pred             EEECCCHHHHHHHHHHhccCcEEEEeccc
Confidence            99887654444444444455555556644

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK06153 hypothetical protein; Provisional

Probab=89.39  E-value=3.3  Score=40.67  Aligned_cols=113  Identities=14%  Similarity=0.096  Sum_probs=58.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~D  108 (300)
                      .||+|+|| |..|..+++.+....--+|+ ++|.+     ...+..+.+ .. ...|.  +-.+-+.+.+.+    -.++
T Consensus       177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~-LVD~D~Ve~SNLnRQ~gaf-~~-~DvGk~~~KVevaa~rl~~----in~~  248 (393)
T PRK06153        177 QRIAIIGL-GGTGSYILDLVAKTPVREIH-LFDGDDFLQHNAFRSPGAA-SI-EELREAPKKVDYFKSRYSN----MRRG  248 (393)
T ss_pred             CcEEEEcC-CccHHHHHHHHHHcCCCEEE-EECCCEecccccccccccC-CH-hHcCCcchHHHHHHHHHHH----hCCe
Confidence            58999999 99999999999876544554 46632     111111000 00 01111  111112222221    2344


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEE
Q 022250          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      +......-  ..+++. .+ .+..+|+..+.-. +....|.++|.+.++|++-
T Consensus       249 I~~~~~~I--~~~n~~-~L-~~~DiV~dcvDn~-~aR~~ln~~a~~~gIP~Id  296 (393)
T PRK06153        249 IVPHPEYI--DEDNVD-EL-DGFTFVFVCVDKG-SSRKLIVDYLEALGIPFID  296 (393)
T ss_pred             EEEEeecC--CHHHHH-Hh-cCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEE
Confidence            43221111  122332 22 5788888887532 2356677888888888773

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=89.24  E-value=3.3  Score=37.22  Aligned_cols=99  Identities=9%  Similarity=0.153  Sum_probs=58.0

Q ss_pred             HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce---ecCHHHHHhcccccCCccE-EEEcC---Cch-h----
Q 022250           51 AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAV-VIDFT---DAS-T----  118 (300)
Q Consensus        51 i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DV-VIDfT---~p~-~----  118 (300)
                      =++++.+.-++-++|++-++.-            ...+.+   .++++++.+     ..+|| .+|.|   .|+ .    
T Consensus        57 dIkai~~~v~vPIIGIiKrd~~------------~s~v~ITptlkeVd~L~~-----~Ga~IIA~DaT~R~RP~~~~~~~  119 (229)
T COG3010          57 DIKAIRAVVDVPIIGIIKRDYP------------DSPVRITPTLKEVDALAE-----AGADIIAFDATDRPRPDGDLEEL  119 (229)
T ss_pred             hHHHHHhhCCCCeEEEEecCCC------------CCCceecccHHHHHHHHH-----CCCcEEEeecccCCCCcchHHHH
Confidence            3455666677888888865431            112222   245555554     45663 56666   344 1    


Q ss_pred             ----------------HHHHHHHHHHcCCCEEEeCC--CCCH-------HHHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250          119 ----------------VYDNVKQATAFGMRSVVYVP--HIQL-------ETVSALSAFCDKASMGCLIAPTLSIG  168 (300)
Q Consensus       119 ----------------~~~~~~~al~~G~~vVigTT--G~~~-------e~~~~L~~~a~~~~i~iv~a~N~SiG  168 (300)
                                      ..+-...|.+.|..+| |||  |++.       .+++.++++++ .+.+++-=.+|.--
T Consensus       120 i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I-GTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP  192 (229)
T COG3010         120 IARIKYPGQLAMADCSTFEEGLNAHKLGFDII-GTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTP  192 (229)
T ss_pred             HHHhhcCCcEEEeccCCHHHHHHHHHcCCcEE-ecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCH
Confidence                            2344567788898887 887  7654       24556666665 66777765665543

>PLN00198 anthocyanidin reductase; Provisional

Probab=89.20  E-value=1.4  Score=41.28  Aligned_cols=36  Identities=11%  Similarity=0.230  Sum_probs=29.0

Q ss_pred             CCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      .|++ +.+|.|.|++|-+|+.+++.+.+ .+.+++++.
T Consensus         5 ~~~~-~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~   40 (338)
T PLN00198          5 TPTG-KKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTV   40 (338)
T ss_pred             cCCC-CCeEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence            3444 57899999999999999999886 477887654

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=89.18  E-value=0.93  Score=42.93  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=24.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ||+|+|+ |.+|..++-.+...+-+.=+..+|.
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di   32 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDV   32 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            7999998 9999999988876544433446775

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=89.17  E-value=1.7  Score=41.37  Aligned_cols=77  Identities=17%  Similarity=0.142  Sum_probs=54.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (300)
                      -|.|.+|+|..|+.+.+. ++.+++.+||+...+.   . -.++              .+.       ..+|++||+-.+
T Consensus       153 tvvVSaAaGaVGsvvgQi-AKlkG~rVVGiaGg~e---K-~~~l--------------~~~-------lGfD~~idyk~~  206 (340)
T COG2130         153 TVVVSAAAGAVGSVVGQI-AKLKGCRVVGIAGGAE---K-CDFL--------------TEE-------LGFDAGIDYKAE  206 (340)
T ss_pred             EEEEEecccccchHHHHH-HHhhCCeEEEecCCHH---H-HHHH--------------HHh-------cCCceeeecCcc
Confidence            488999999999999985 5589999999875431   0 0111              111       368888888766


Q ss_pred             hhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          117 STVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       117 ~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                       ...+.+..++-.|+++..+..|-
T Consensus       207 -d~~~~L~~a~P~GIDvyfeNVGg  229 (340)
T COG2130         207 -DFAQALKEACPKGIDVYFENVGG  229 (340)
T ss_pred             -cHHHHHHHHCCCCeEEEEEcCCc
Confidence             45666666777888888888764

>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=89.13  E-value=2.9  Score=40.87  Aligned_cols=94  Identities=14%  Similarity=0.089  Sum_probs=57.2

Q ss_pred             EEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCC---Ccchhhhh----cCc------------CCCCcceec---CHHH
Q 022250           40 INGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV---GEDIGMVC----DME------------QPLEIPVMS---DLTM   96 (300)
Q Consensus        40 V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~---g~d~~~~~----g~~------------~~~gv~v~~---dl~~   96 (300)
                      |.|+||-+|+..++.+.+.|+ +++++.......   -+.+.++-    .+.            ...++.++.   .+.+
T Consensus         1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~~   80 (383)
T PRK12464          1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLIA   80 (383)
T ss_pred             CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHHH
Confidence            579999999999999887655 999998763211   00011100    000            001123332   2333


Q ss_pred             HHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      +.+    ..++|+||-...-.+-..-...|+++|+.+-...
T Consensus        81 l~~----~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN  117 (383)
T PRK12464         81 VAT----HPGSDLVLSSVVGAAGLLPTIEALKAKKDIALAN  117 (383)
T ss_pred             HHc----CCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec
Confidence            333    2467988877777777777788889998877663

>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B

Probab=89.02  E-value=4.7  Score=33.46  Aligned_cols=32  Identities=34%  Similarity=0.501  Sum_probs=21.5

Q ss_pred             EEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecC
Q 022250           38 VIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSH   70 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~   70 (300)
                      ..++|. |..|+.+++.+.+.+  +++++|.+|.+
T Consensus        80 ~~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~  113 (175)
T PF13727_consen   80 VLIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDD  113 (175)
T ss_dssp             EEEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-
T ss_pred             eEEEEE-echHHHHHHHHHhhhhcCceEEEEEeCc
Confidence            356675 788999999997654  68999999865

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=88.99  E-value=2.4  Score=44.78  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=25.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .-||+|+|+ |-||..|+..++. .+++++ .+|.
T Consensus       313 i~~v~ViGa-G~mG~gIA~~~a~-~G~~V~-l~d~  344 (715)
T PRK11730        313 VKQAAVLGA-GIMGGGIAYQSAS-KGVPVI-MKDI  344 (715)
T ss_pred             cceEEEECC-chhHHHHHHHHHh-CCCeEE-EEeC
Confidence            357999998 9999999998774 588766 4664

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=88.93  E-value=1.4  Score=41.96  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=24.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      +||+|+|+ |++|+.++-.+....-. ||+ .+|.+
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~-LiDi~   34 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELV-LIDIN   34 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEE-EEEcc
Confidence            58999998 99999999988544333 444 57753

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=88.93  E-value=2.5  Score=41.79  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=26.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      +..|.|+|+||+.|+.+++.+.+ .++-+-+++-
T Consensus        79 ~~~VlVvGatG~vG~~iv~~llk-rgf~vra~VR  111 (411)
T KOG1203|consen   79 PTTVLVVGATGKVGRRIVKILLK-RGFSVRALVR  111 (411)
T ss_pred             CCeEEEecCCCchhHHHHHHHHH-CCCeeeeecc
Confidence            58899999999999999998885 4566655553

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=88.87  E-value=3.3  Score=40.99  Aligned_cols=123  Identities=10%  Similarity=0.077  Sum_probs=65.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec---CCCCcc-hhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~---~~~g~d-~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      ||.||+|+|. |-++..+++++.+ -+++++++...   +..+.. +.+..-+......+-|.|.+.+++ ++...++|+
T Consensus         1 ~~kkili~g~-g~~~~~~~~aa~~-lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~-~a~~~~id~   77 (449)
T TIGR00514         1 MLDKILIANR-GEIALRILRACKE-LGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIIS-AAEITGADA   77 (449)
T ss_pred             CcceEEEeCC-CHHHHHHHHHHHH-cCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHH-HHHHhCCCE
Confidence            4679999997 9999999998875 58998876431   111110 111000000111123555555553 122357888


Q ss_pred             EEEcCC--chhHHHHHHHHHHcCCCEEEeCC-CCC-HHHHHHHHHHhhhCCCeEE
Q 022250          110 VIDFTD--ASTVYDNVKQATAFGMRSVVYVP-HIQ-LETVSALSAFCDKASMGCL  160 (300)
Q Consensus       110 VIDfT~--p~~~~~~~~~al~~G~~vVigTT-G~~-~e~~~~L~~~a~~~~i~iv  160 (300)
                      |+-...  .+. ......+.+.|++++.-.+ .+. -......+++++++|+|+.
T Consensus        78 I~pg~g~~se~-~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~p  131 (449)
T TIGR00514        78 IHPGYGFLSEN-ANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCV  131 (449)
T ss_pred             EEeCCCccccC-HHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCC
Confidence            874221  111 2244566778888763221 111 1123456777888888753

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=88.86  E-value=3.8  Score=38.64  Aligned_cols=32  Identities=16%  Similarity=0.205  Sum_probs=24.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      +||+|+|+ |.||..++..++...-.+ +-.+|.
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi   33 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDV   33 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeC
Confidence            58999998 999999999887543236 556775

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=88.83  E-value=1  Score=42.55  Aligned_cols=91  Identities=5%  Similarity=0.068  Sum_probs=59.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -+++|+|+ |..|+.+++++..-..++=+-+++++.  ..+..++. +....+  +.+.+|.++++.      ++|||+-
T Consensus       118 ~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~f~~~~~~~~~~~v~~~~~~~eav~------~aDIV~t  188 (301)
T PRK06407        118 ENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNF--DHARAFAERFSKEFGVDIRPVDNAEAALR------DADTITS  188 (301)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence            67999997 999999999998877888788888653  22222221 001224  445689999984      8999996


Q ss_pred             cCCc-hhHHHHHHHHHHcCCCEE-EeC
Q 022250          113 FTDA-STVYDNVKQATAFGMRSV-VYV  137 (300)
Q Consensus       113 fT~p-~~~~~~~~~al~~G~~vV-igT  137 (300)
                      .|+. +.+.+  ...++.|.+|. ||+
T Consensus       189 aT~s~~P~~~--~~~l~pg~hV~aiGs  213 (301)
T PRK06407        189 ITNSDTPIFN--RKYLGDEYHVNLAGS  213 (301)
T ss_pred             ecCCCCcEec--HHHcCCCceEEecCC
Confidence            6642 22221  23456788877 454

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=88.82  E-value=1.9  Score=45.53  Aligned_cols=33  Identities=21%  Similarity=0.158  Sum_probs=27.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||+|+|+ |-||..|+..++...+++++- +|.
T Consensus       309 i~~v~ViGa-G~mG~giA~~~a~~~G~~V~l-~d~  341 (708)
T PRK11154        309 VNKVGVLGG-GLMGGGIAYVTATKAGLPVRI-KDI  341 (708)
T ss_pred             ccEEEEECC-chhhHHHHHHHHHHcCCeEEE-EeC
Confidence            468999998 999999999877567888764 664

>PRK07825 short chain dehydrogenase; Provisional

Probab=88.82  E-value=3.9  Score=36.93  Aligned_cols=80  Identities=21%  Similarity=0.128  Sum_probs=51.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+..++. ++++.  ....++               .+.+      ..+. +..|++
T Consensus         6 ~~ilVtGasggiG~~la~~l~~-~G~~v~~-~~r~~--~~~~~~---------------~~~~------~~~~~~~~D~~   60 (273)
T PRK07825          6 KVVAITGGARGIGLATARALAA-LGARVAI-GDLDE--ALAKET---------------AAEL------GLVVGGPLDVT   60 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHh------ccceEEEccCC
Confidence            5799999999999999998875 5777654 33321  111110               0111      1122 356899


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  +++++|-..|.
T Consensus        61 ~~~~~~~~~~~~~~~~~~id~li~~ag~   88 (273)
T PRK07825         61 DPASFAAFLDAVEADLGPIDVLVNNAGV   88 (273)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            998887777766553  67888876653

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=88.70  E-value=0.96  Score=42.60  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=24.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |||.|.|++|-+|+.+++.+.+. +.+.+-.++
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~   32 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD   32 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence            48999999999999999999865 333333344

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=88.67  E-value=1.1  Score=43.07  Aligned_cols=89  Identities=11%  Similarity=0.065  Sum_probs=58.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -.++|+|+ |.+++.+++++.+.-+++=+-+++++.  +....++ .+....+  +...+|.++++      ..+|+||-
T Consensus       131 ~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~--~~~e~~a~~l~~~~~~~v~a~~s~~~av------~~aDiIvt  201 (330)
T COG2423         131 STLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDP--EAAEAFAARLRKRGGEAVGAADSAEEAV------EGADIVVT  201 (330)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCH--HHHHHHHHHHHhhcCccceeccCHHHHh------hcCCEEEE
Confidence            35999998 999999999999888887778888653  1111121 1112333  34457888988      47999997


Q ss_pred             cCCchhHHHHHHHHHHcCCCEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV  134 (300)
                      +|+... .-....-++.|.|+.
T Consensus       202 ~T~s~~-Pil~~~~l~~G~hI~  222 (330)
T COG2423         202 ATPSTE-PVLKAEWLKPGTHIN  222 (330)
T ss_pred             ecCCCC-CeecHhhcCCCcEEE
Confidence            664333 222245566777776

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=88.66  E-value=6.7  Score=36.91  Aligned_cols=90  Identities=18%  Similarity=0.190  Sum_probs=49.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCcCCCCcc-e--e--cCHHHHHhcccccCCccEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIP-V--M--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~~~~~g~~~~~gv~-v--~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      +|.|+|+ |.+|...++.+.. .+.+ +++ ++.+.  .. .+++   .++|.. +  +  +++++....   ...+|++
T Consensus       172 ~VlV~G~-G~vG~~aiqlak~-~G~~~Vi~-~~~~~--~~-~~~a---~~lGa~~vi~~~~~~~~~~~~~---~g~~D~v  239 (343)
T PRK09880        172 RVFVSGV-GPIGCLIVAAVKT-LGAAEIVC-ADVSP--RS-LSLA---REMGADKLVNPQNDDLDHYKAE---KGYFDVS  239 (343)
T ss_pred             EEEEECC-CHHHHHHHHHHHH-cCCcEEEE-EeCCH--HH-HHHH---HHcCCcEEecCCcccHHHHhcc---CCCCCEE
Confidence            6999997 9999999987664 5664 543 44321  11 1121   123321 1  1  234444421   1248999


Q ss_pred             EEcCCchhHHHHHHHHH-HcCCCEEEeCC
Q 022250          111 IDFTDASTVYDNVKQAT-AFGMRSVVYVP  138 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al-~~G~~vVigTT  138 (300)
                      +|++-.....+.+..++ ..|+=+.+|.+
T Consensus       240 id~~G~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        240 FEVSGHPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             EECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence            99987544444444444 45555556754

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=88.64  E-value=2.6  Score=39.83  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=25.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (300)
                      |||+|+|++|.+|..++..+...+-. +|+. +|+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~l-vd~   34 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINL-ISR   34 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EEC
Confidence            68999999899999999988865432 4554 454

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=88.50  E-value=2  Score=41.99  Aligned_cols=89  Identities=13%  Similarity=0.186  Sum_probs=46.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |||+|+|. |.=...+++.+.++++...+.+ ++...|..   ..   .+ .+.+ +.|.+++++ ..+..++|+++-.+
T Consensus         1 ~kvliiG~-G~~~~~l~~~l~~~~~~~~i~~-~~~n~g~~---~~---~~-~~~~~~~d~~~l~~-~~~~~~id~vi~~~   70 (420)
T PRK00885          1 MKVLVIGS-GGREHALAWKLAQSPLVEKVYV-APGNAGTA---LL---AE-NVVIDVTDIEALVA-FAKEEGIDLTVVGP   70 (420)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEE-eCCCHHHH---hh---cc-ccCCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence            69999997 6545567877777766543333 43221111   00   01 1111 256666543 12235789887433


Q ss_pred             CchhHHHHHHHHHHcCCCEE
Q 022250          115 DASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vV  134 (300)
                      ...........+.+.|++++
T Consensus        71 e~~l~~~~~~~l~~~gi~~~   90 (420)
T PRK00885         71 EAPLVAGIVDAFRAAGLPIF   90 (420)
T ss_pred             chHHHHHHHHHHHHCCCcEE
Confidence            22223344556667888866

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=88.47  E-value=3.2  Score=39.05  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=26.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~   69 (300)
                      .+|.|.|++|.+|+.+++.+.+.. ..+++. +++
T Consensus         5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~-~~r   38 (324)
T TIGR03589         5 KSILITGGTGSFGKAFISRLLENYNPKKIII-YSR   38 (324)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEE-EcC
Confidence            679999999999999999988653 356664 443

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=88.45  E-value=1.9  Score=40.17  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=28.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++.++.
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~   38 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLL-RGYTVKATVRD   38 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECC
Confidence            5899999999999999998875 47888877654

>PRK12743 oxidoreductase; Provisional

Probab=88.42  E-value=4.3  Score=36.29  Aligned_cols=86  Identities=13%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      +-+|.|.|++|.+|+.+++.+.+ .+.+++....++.  .....+.              +++-.   ....++ +-+|+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~~~--~~~~~~~--------------~~~~~---~~~~~~~~~~Dl   61 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQ-QGFDIGITWHSDE--EGAKETA--------------EEVRS---HGVRAEIRQLDL   61 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCCh--HHHHHHH--------------HHHHh---cCCceEEEEccC
Confidence            45799999999999999999886 5888876554332  1111110              11110   001233 34688


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      +.++.....+..+.+.  .+.+|+-..|.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~id~li~~ag~   90 (256)
T PRK12743         62 SDLPEGAQALDKLIQRLGRIDVLVNNAGA   90 (256)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            8888887777666543  46788877664

>PRK07326 short chain dehydrogenase; Provisional

Probab=88.40  E-value=2.9  Score=36.60  Aligned_cols=82  Identities=20%  Similarity=0.213  Sum_probs=48.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|+|++|.+|+.+++.+.+ .+.+++.+ +++.  ....++.              +++.+    ...++ +..|.+
T Consensus         7 ~~ilItGatg~iG~~la~~l~~-~g~~V~~~-~r~~--~~~~~~~--------------~~l~~----~~~~~~~~~D~~   64 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLA-EGYKVAIT-ARDQ--KELEEAA--------------AELNN----KGNVLGLAADVR   64 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHH-CCCEEEEe-eCCH--HHHHHHH--------------HHHhc----cCcEEEEEccCC
Confidence            5799999999999999999886 48886654 4332  1111110              11110    01233 334777


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++|+=..|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~d~vi~~ag   91 (237)
T PRK07326         65 DEADVQRAVDAIVAAFGGLDVLIANAG   91 (237)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777776666655443  5777776554

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=88.38  E-value=4.2  Score=38.64  Aligned_cols=95  Identities=15%  Similarity=0.144  Sum_probs=51.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc---cee---cCHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVM---SDLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv---~v~---~dl~~~l~~~~~~~~~DV  109 (300)
                      -+|.|.|++|.+|...++.++ ..+.++++......   ....+.   ..+|.   ..+   +++.+.+.+.. ...+|+
T Consensus       160 ~~VlV~GaaG~vG~~aiqlAk-~~G~~Vi~~~~~~~---k~~~~~---~~lGa~~vi~~~~~~~~~~~i~~~~-~~gvD~  231 (348)
T PLN03154        160 DSVFVSAASGAVGQLVGQLAK-LHGCYVVGSAGSSQ---KVDLLK---NKLGFDEAFNYKEEPDLDAALKRYF-PEGIDI  231 (348)
T ss_pred             CEEEEecCccHHHHHHHHHHH-HcCCEEEEEcCCHH---HHHHHH---HhcCCCEEEECCCcccHHHHHHHHC-CCCcEE
Confidence            369999999999999998765 46888776543221   111110   01222   112   13444332111 125799


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      ++|++-.......+......|.=+++|..
T Consensus       232 v~d~vG~~~~~~~~~~l~~~G~iv~~G~~  260 (348)
T PLN03154        232 YFDNVGGDMLDAALLNMKIHGRIAVCGMV  260 (348)
T ss_pred             EEECCCHHHHHHHHHHhccCCEEEEECcc
Confidence            99988765444444444445554556643

>PRK07024 short chain dehydrogenase; Provisional

Probab=88.32  E-value=2.9  Score=37.48  Aligned_cols=85  Identities=20%  Similarity=0.258  Sum_probs=51.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVID  112 (300)
                      |+.+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.               +.+.   ...++. +.+|
T Consensus         1 ~~~~vlItGas~gIG~~la~~l~~-~G~~v~~-~~r~~--~~~~~~~---------------~~~~---~~~~~~~~~~D   58 (257)
T PRK07024          1 MPLKVFITGASSGIGQALAREYAR-QGATLGL-VARRT--DALQAFA---------------ARLP---KAARVSVYAAD   58 (257)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------Hhcc---cCCeeEEEEcC
Confidence            356899999999999999999875 5777664 44431  1111110               1110   000122 4568


Q ss_pred             cCCchhHHHHHHHHHH-cC-CCEEEeCCCC
Q 022250          113 FTDASTVYDNVKQATA-FG-MRSVVYVPHI  140 (300)
Q Consensus       113 fT~p~~~~~~~~~al~-~G-~~vVigTTG~  140 (300)
                      ++.++...+.+..+.+ .| +++++=..|.
T Consensus        59 l~~~~~i~~~~~~~~~~~g~id~lv~~ag~   88 (257)
T PRK07024         59 VRDADALAAAAADFIAAHGLPDVVIANAGI   88 (257)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence            8888887776665544 33 6888776653

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=88.21  E-value=1.4  Score=42.22  Aligned_cols=30  Identities=30%  Similarity=0.615  Sum_probs=24.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ||+|+|+ |..|+.+++.+.+ -+++++.+ |.
T Consensus         1 kililG~-g~~~~~l~~aa~~-~G~~v~~~-d~   30 (380)
T TIGR01142         1 RVLLLGS-GELGKEVAIEAQR-LGVEVIAV-DR   30 (380)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCEEEEE-eC
Confidence            7999997 9999999998775 58887654 44

This enzyme is an alternative to PurN (TIGR00639)

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=88.19  E-value=2.1  Score=40.48  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=28.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      .+||.|.|++|-+|+.+++.+.+ .+.++++..+
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~-~G~~V~~~~r   42 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQ-RGYTVHATLR   42 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence            36899999999999999999885 5788887654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=87.97  E-value=5  Score=38.42  Aligned_cols=147  Identities=16%  Similarity=0.080  Sum_probs=73.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC-CCccee-c----CHHHHHhcccccCCccEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVM-S----DLTMVLGSISQSKARAVV  110 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~-~----dl~~~l~~~~~~~~~DVV  110 (300)
                      +|+|+|+ |-||-..+..+... +..-+-++|...  .. -+++   .+ .+..+. +    +..+.+.+......+|++
T Consensus       171 ~V~V~Ga-GpIGLla~~~a~~~-Ga~~Viv~d~~~--~R-l~~A---~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~v  242 (350)
T COG1063         171 TVVVVGA-GPIGLLAIALAKLL-GASVVIVVDRSP--ER-LELA---KEAGGADVVVNPSEDDAGAEILELTGGRGADVV  242 (350)
T ss_pred             EEEEECC-CHHHHHHHHHHHHc-CCceEEEeCCCH--HH-HHHH---HHhCCCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence            6999998 99999988766644 444444557532  11 1111   11 122211 1    111111110011258999


Q ss_pred             EEcCC-chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeE-E
Q 022250          111 IDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVE-I  188 (300)
Q Consensus       111 IDfT~-p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~die-I  188 (300)
                      ||+|- +.+..+.+..+...|.=+++|+++-.... .....+..+ ++.+.=+-+ ...-.-+.++.+.++.-..|.+ +
T Consensus       243 ie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~-~~~~~~~~k-el~l~gs~~-~~~~~~~~~~~~ll~~g~i~~~~l  319 (350)
T COG1063         243 IEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIP-LPAGLVVSK-ELTLRGSLR-PSGREDFERALDLLASGKIDPEKL  319 (350)
T ss_pred             EECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCc-cCHHHHHhc-ccEEEeccC-CCCcccHHHHHHHHHcCCCChhHc
Confidence            99995 44455555666667777888988654211 112222222 244443312 1122245556666654344544 3


Q ss_pred             EEccCCC
Q 022250          189 VESRPNA  195 (300)
Q Consensus       189 iE~Hh~K  195 (300)
                      + +|.-+
T Consensus       320 i-t~~~~  325 (350)
T COG1063         320 I-THRLP  325 (350)
T ss_pred             e-Eeecc
Confidence            3 56544

>COG2403 Predicted GTPase [General function prediction only]

Probab=87.93  E-value=2.3  Score=41.53  Aligned_cols=96  Identities=22%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC--cch--hhhhcCcCCCCcceec-----CHHHHHhcccccC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDI--GMVCDMEQPLEIPVMS-----DLTMVLGSISQSK  105 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g--~d~--~~~~g~~~~~gv~v~~-----dl~~~l~~~~~~~  105 (300)
                      +.||.+.|+.|+==-..=.++...+.++++++......|  ...  .++.|...+.|+|++.     ++++++.    +.
T Consensus         6 ~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ir----e~   81 (449)
T COG2403           6 RKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIR----EK   81 (449)
T ss_pred             ceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHH----Hc
Confidence            589999998655333333445667888888776521110  000  1233333567888863     4666665    47


Q ss_pred             Ccc-EEEEcC--CchhHHHHHHHHHHcCCCEE
Q 022250          106 ARA-VVIDFT--DASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       106 ~~D-VVIDfT--~p~~~~~~~~~al~~G~~vV  134 (300)
                      ++| +|+|+|  +++....++...+..|....
T Consensus        82 ~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~  113 (449)
T COG2403          82 DVDIVVLAYSDVSYEHVFRIASRVLSAGADFK  113 (449)
T ss_pred             CCCeEEEEcccCCHHHHHHHHHHHHhCCceeE
Confidence            899 999999  68888999999999887655

>PRK09186 flagellin modification protein A; Provisional

Probab=87.88  E-value=3.7  Score=36.42  Aligned_cols=30  Identities=37%  Similarity=0.377  Sum_probs=25.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus         5 k~vlItGas~giG~~~a~~l~~-~g~~v~~~   34 (256)
T PRK09186          5 KTILITGAGGLIGSALVKAILE-AGGIVIAA   34 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEE
Confidence            5799999999999999999875 57887765

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=87.82  E-value=2.4  Score=39.38  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=26.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      ..+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~-~G~~V~~~~   36 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLF-RGYTINATV   36 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence            36899999999999999998875 578877643

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.81  E-value=3.8  Score=35.92  Aligned_cols=82  Identities=18%  Similarity=0.196  Sum_probs=49.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      -+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ....++               .+.+..   ..... +..|++
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~-~G~~V~~~-~r~~--~~~~~~---------------~~~~~~---~~~~~~~~~Dl~   63 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALK-EGAQVCIN-SRNE--NKLKRM---------------KKTLSK---YGNIHYVVGDVS   63 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHH---------------HHHHHh---cCCeEEEECCCC
Confidence            4799999999999999998875 58888764 3321  111111               011100   01222 345788


Q ss_pred             CchhHHHHHHHHHH--cCCCEEEeCCC
Q 022250          115 DASTVYDNVKQATA--FGMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~--~G~~vVigTTG  139 (300)
                      .++...+.++.+.+  .+++.++-+.|
T Consensus        64 ~~~~~~~~~~~~~~~~~~id~ii~~ag   90 (238)
T PRK05786         64 STESARNVIEKAAKVLNAIDGLVVTVG   90 (238)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence            88877777666544  35677776664

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=87.73  E-value=3.8  Score=34.83  Aligned_cols=83  Identities=17%  Similarity=0.067  Sum_probs=47.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -||.|+|+ |++|...++.+.+ .+.+++ ++++.. .++..++.      .+.. ...+++.-     -.++|+||-.|
T Consensus        14 ~~vlVvGG-G~va~rka~~Ll~-~ga~V~-VIsp~~-~~~l~~l~------~i~~~~~~~~~~d-----l~~a~lViaaT   78 (157)
T PRK06719         14 KVVVIIGG-GKIAYRKASGLKD-TGAFVT-VVSPEI-CKEMKELP------YITWKQKTFSNDD-----IKDAHLIYAAT   78 (157)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCcc-CHHHHhcc------CcEEEecccChhc-----CCCceEEEECC
Confidence            68999998 9999999998875 566666 345432 22222211      1111 12222211     14678888888


Q ss_pred             CchhHHHHHHHHHHcCCCE
Q 022250          115 DASTVYDNVKQATAFGMRS  133 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~v  133 (300)
                      .-+.....+..+++.+.++
T Consensus        79 ~d~e~N~~i~~~a~~~~~v   97 (157)
T PRK06719         79 NQHAVNMMVKQAAHDFQWV   97 (157)
T ss_pred             CCHHHHHHHHHHHHHCCcE
Confidence            7666655555444545433

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.69  E-value=0.88  Score=40.49  Aligned_cols=86  Identities=15%  Similarity=0.147  Sum_probs=52.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      +..|.|.|++|.+|+.+++.+.+ .+.+++.+.....  ......              .+++-..   ..+.+ +-.|+
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~-~g~~vi~~~r~~~--~~~~~~--------------~~~~~~~---~~~~~~~~~D~   61 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAA-AGFDLAINDRPDD--EELAAT--------------QQELRAL---GVEVIFFPADV   61 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHH-CCCEEEEEecCch--hHHHHH--------------HHHHHhc---CCceEEEEecC
Confidence            45689999999999999999885 4788876432211  000000              0111000   01233 35788


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      +.++...+.+..+.+.  .+.+|+-..|.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~   90 (256)
T PRK12745         62 ADLSAHEAMLDAAQAAWGRIDCLVNNAGV   90 (256)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence            9888887777766554  57888877764

>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO

Probab=87.69  E-value=1.3  Score=38.01  Aligned_cols=87  Identities=14%  Similarity=0.155  Sum_probs=42.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      -+|+++|| |.=|..++..+--.++. |..++|.++  ...|.+.   +-.++||.+ .+++.+     ..+|++|.++.
T Consensus        69 k~I~~yGA-~~kg~tlln~~g~~~~~-I~~vvD~np--~K~G~~~---PGt~ipI~~-p~~l~~-----~~pd~vivlaw  135 (160)
T PF08484_consen   69 KRIAGYGA-GAKGNTLLNYFGLDNDL-IDYVVDDNP--LKQGKYL---PGTHIPIVS-PEELKE-----RKPDYVIVLAW  135 (160)
T ss_dssp             --EEEE----SHHHHHHHHHT--TTT-S--EEES-G--GGTTEE----TTT--EEEE-GGG--S-----S--SEEEES-G
T ss_pred             CEEEEECc-chHHHHHHHHhCCCcce-eEEEEeCCh--hhcCccc---CCCCCeECC-HHHHhh-----CCCCEEEEcCh
Confidence            57999999 77799988877544443 667788543  2223333   334677764 456654     57899887652


Q ss_pred             --chhHHHHHHHHHHcCCCEEE
Q 022250          116 --ASTVYDNVKQATAFGMRSVV  135 (300)
Q Consensus       116 --p~~~~~~~~~al~~G~~vVi  135 (300)
                        .+...+.++...+.|-.+|+
T Consensus       136 ~y~~EI~~~~~~~~~~gg~fi~  157 (160)
T PF08484_consen  136 NYKDEIIEKLREYLERGGKFIV  157 (160)
T ss_dssp             GGHHHHHHHTHHHHHTT-EEEE
T ss_pred             hhHHHHHHHHHHHHhcCCEEEE
Confidence              34445555666677776665

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=87.52  E-value=7.8  Score=37.29  Aligned_cols=92  Identities=14%  Similarity=0.083  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCchh-HHHHHH
Q 022250           48 GRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYDNVK  124 (300)
Q Consensus        48 G~~i~~~i~~~~~~eLvg~vd~~~~--g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~-~~~~~~  124 (300)
                      |..++..+.+ .++++. ++|++..  ..+..+.+   ...|+.+.+|..+++.      ++|+||-+.++.. ..+.+.
T Consensus        32 G~~MA~~La~-aG~~V~-v~Dr~~~~l~~~~~~~l---~~~Gi~~asd~~eaa~------~ADvVIlaVP~~~~v~~Vl~  100 (342)
T PRK12557         32 GSRMAIEFAE-AGHDVV-LAEPNRSILSEELWKKV---EDAGVKVVSDDAEAAK------HGEIHILFTPFGKKTVEIAK  100 (342)
T ss_pred             HHHHHHHHHh-CCCeEE-EEECCHHHhhHHHHHHH---HHCCCEEeCCHHHHHh------CCCEEEEECCCcHHHHHHHH
Confidence            4445555543 466655 4565421  00011111   2456777778888773      7899998877666 455544


Q ss_pred             HHH---HcCCCEEEeCCCCCHHHH-HHHHHH
Q 022250          125 QAT---AFGMRSVVYVPHIQLETV-SALSAF  151 (300)
Q Consensus       125 ~al---~~G~~vVigTTG~~~e~~-~~L~~~  151 (300)
                      ..+   ..|.-++..+|+ +.... +.+.+.
T Consensus       101 ~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~  130 (342)
T PRK12557        101 NILPHLPENAVICNTCTV-SPVVLYYSLEGE  130 (342)
T ss_pred             HHHhhCCCCCEEEEecCC-CHHHHHHHHHHH
Confidence            333   345444443444 44443 445444

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=87.40  E-value=3.9  Score=39.46  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=22.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAG   65 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg   65 (300)
                      ..+|.|+|++|..|+..++.+.. -++ .+++
T Consensus       158 g~~vLv~ggsggVG~~aiQlAk~-~~~~~v~t  188 (347)
T KOG1198|consen  158 GKSVLVLGGSGGVGTAAIQLAKH-AGAIKVVT  188 (347)
T ss_pred             CCeEEEEeCCcHHHHHHHHHHHh-cCCcEEEE
Confidence            36799999999999999997664 443 3443

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=87.38  E-value=1.2  Score=44.42  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA   58 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~   58 (300)
                      ++||+|+|++|.+|..++-.+...
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~  123 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASG  123 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhc
Confidence            589999998899999999988754

>PRK05586 biotin carboxylase; Validated

Probab=87.36  E-value=3.8  Score=40.50  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |+.||+|+|. |.+|..+++.+.+ -+++.+++.+.
T Consensus         1 ~~kkvli~g~-G~~~~~~~~aa~~-lG~~~v~v~~~   34 (447)
T PRK05586          1 MFKKILIANR-GEIAVRIIRACRE-MGIETVAVYSE   34 (447)
T ss_pred             CcceEEEECC-cHHHHHHHHHHHH-cCCcEEEEcCh
Confidence            4579999997 9999999998875 48888887553

>cd08230 glucose_DH Glucose dehydrogenase

Probab=87.21  E-value=2.3  Score=40.25  Aligned_cols=93  Identities=16%  Similarity=0.229  Sum_probs=49.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVI  111 (300)
                      -+|.|+|+ |.+|...++.+.. .+.+++++ ++.....+-.+++   .++|....    ++.++ ..   ....+|+||
T Consensus       174 ~~vlI~G~-G~vG~~a~q~ak~-~G~~vi~~-~~~~~~~~~~~~~---~~~Ga~~v~~~~~~~~~-~~---~~~~~d~vi  243 (355)
T cd08230         174 RRALVLGA-GPIGLLAALLLRL-RGFEVYVL-NRRDPPDPKADIV---EELGATYVNSSKTPVAE-VK---LVGEFDLII  243 (355)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-cCCeEEEE-ecCCCCHHHHHHH---HHcCCEEecCCccchhh-hh---hcCCCCEEE
Confidence            37999997 9999999987664 57776664 3210001111121   12332211    12222 11   013689999


Q ss_pred             EcCCc-hhHHHHHHHHHHcCCCEEEeCC
Q 022250          112 DFTDA-STVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       112 DfT~p-~~~~~~~~~al~~G~~vVigTT  138 (300)
                      |++-. ....+.+......|.=+.+|.+
T Consensus       244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         244 EATGVPPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             ECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence            98864 3444444444455665567765

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=87.21  E-value=4.7  Score=39.97  Aligned_cols=85  Identities=16%  Similarity=0.142  Sum_probs=48.5

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||.|+|. |+.|.. +++.+. ..+.++.+ .|.... ....++    .+.|+.++. ...+.+      .++|+||-
T Consensus         7 ~~~v~viG~-G~sG~s~~a~~L~-~~G~~V~~-~D~~~~-~~~~~l----~~~gi~~~~~~~~~~~------~~~d~vv~   72 (461)
T PRK00421          7 IKRIHFVGI-GGIGMSGLAEVLL-NLGYKVSG-SDLKES-AVTQRL----LELGAIIFIGHDAENI------KDADVVVY   72 (461)
T ss_pred             CCEEEEEEE-chhhHHHHHHHHH-hCCCeEEE-ECCCCC-hHHHHH----HHCCCEEeCCCCHHHC------CCCCEEEE
Confidence            358999998 999999 687766 56888764 664321 112222    234665542 222334      36898874


Q ss_pred             cCC-chhHHHHHHHHHHcCCCEE
Q 022250          113 FTD-ASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       113 fT~-p~~~~~~~~~al~~G~~vV  134 (300)
                      -.. |. ..+.+..|.++|+|++
T Consensus        73 spgi~~-~~~~~~~a~~~~i~i~   94 (461)
T PRK00421         73 SSAIPD-DNPELVAARELGIPVV   94 (461)
T ss_pred             CCCCCC-CCHHHHHHHHCCCcEE
Confidence            321 22 2334455556666654

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=87.19  E-value=2.3  Score=41.58  Aligned_cols=91  Identities=12%  Similarity=0.172  Sum_probs=48.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |||+|+|. |.-+.++++.+.+.. ..+..++++...|.  ....   ...-+. -+.|.+.+++ +.+..++|+++-.+
T Consensus         1 ~kiliiG~-G~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~d~~~l~~-~~~~~~id~vi~~~   72 (423)
T TIGR00877         1 MKVLVIGN-GGREHALAWKLAQSP-LVKYVYVAPGNAGT--ARLA---KNKNVAISITDIEALVE-FAKKKKIDLAVIGP   72 (423)
T ss_pred             CEEEEECC-ChHHHHHHHHHHhCC-CccEEEEECCCHHH--hhhc---ccccccCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence            69999997 888999999988753 33333344332111  1000   001111 1256555543 22235788887544


Q ss_pred             CchhHHHHHHHHHHcCCCEE
Q 022250          115 DASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vV  134 (300)
                      .-......+..+.++|++++
T Consensus        73 e~~l~~~~~~~l~~~gi~~~   92 (423)
T TIGR00877        73 EAPLVLGLVDALEEAGIPVF   92 (423)
T ss_pred             chHHHHHHHHHHHHCCCeEE
Confidence            22222344556667787765

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>PRK12939 short chain dehydrogenase; Provisional

Probab=87.18  E-value=6.9  Score=34.39  Aligned_cols=84  Identities=20%  Similarity=0.282  Sum_probs=52.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ......              .+++...   ..+++ +.+|++
T Consensus         8 ~~vlItGa~g~iG~~la~~l~~-~G~~v~~~-~r~~--~~~~~~--------------~~~~~~~---~~~~~~~~~Dl~   66 (250)
T PRK12939          8 KRALVTGAARGLGAAFAEALAE-AGATVAFN-DGLA--AEAREL--------------AAALEAA---GGRAHAIAADLA   66 (250)
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-cCCEEEEE-eCCH--HHHHHH--------------HHHHHhc---CCcEEEEEccCC
Confidence            6799999999999999999875 57887765 4331  111111              0111100   01233 355888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++.....+..+.+.  ++.+|+-..|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~id~vi~~ag~   94 (250)
T PRK12939         67 DPASVQRFFDAAAAALGGLDGLVNNAGI   94 (250)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            888877777666553  67888877654

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.15  E-value=5  Score=35.80  Aligned_cols=79  Identities=20%  Similarity=0.198  Sum_probs=50.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++....+..   +.                 .+++..     ... -+..|.+
T Consensus         8 k~~lItGas~gIG~~~a~~l~~-~G~~v~~~~~~~~---~~-----------------~~~l~~-----~~~~~~~~Dl~   61 (255)
T PRK06463          8 KVALITGGTRGIGRAIAEAFLR-EGAKVAVLYNSAE---NE-----------------AKELRE-----KGVFTIKCDVG   61 (255)
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCcH---HH-----------------HHHHHh-----CCCeEEEecCC
Confidence            5799999999999999999875 5777765432221   10                 011111     112 2456888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++.+|+=..|.
T Consensus        62 ~~~~~~~~~~~~~~~~~~id~li~~ag~   89 (255)
T PRK06463         62 NRDQVKKSKEVVEKEFGRVDVLVNNAGI   89 (255)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            888887777766554  57778766553

>PRK13789 phosphoribosylamine--glycine ligase; Provisional

Probab=87.12  E-value=4.5  Score=40.03  Aligned_cols=117  Identities=13%  Similarity=0.034  Sum_probs=57.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ++|||.|+|. |.==.+++..+.+++....+.+ .+...|..  ...   ....+++ ..|.+++++ .++..++|.||-
T Consensus         3 ~~~kvLviG~-g~rehal~~~~~~~~~~~~~~~-~pgn~g~~--~~~---~~~~~~~~~~d~~~l~~-~a~~~~iD~Vv~   74 (426)
T PRK13789          3 VKLKVLLIGS-GGRESAIAFALRKSNLLSELKV-FPGNGGFP--DDE---LLPADSFSILDKSSVQS-FLKSNPFDLIVV   74 (426)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHhCCCCCEEEE-ECCchHHh--ccc---cccccCcCcCCHHHHHH-HHHHcCCCEEEE
Confidence            4589999997 6545677888877775533322 22221110  000   0011122 356666554 223457898873


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCC--HH-HHHHHHHHhhhCCCeE
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQ--LE-TVSALSAFCDKASMGC  159 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~--~e-~~~~L~~~a~~~~i~i  159 (300)
                      ..........+..+.+.|+|++ |.+-..  .+ .....+++.+++|+|.
T Consensus        75 g~E~~l~~glad~~~~~Gip~~-Gp~~~aa~le~dK~~~K~~l~~~gIpt  123 (426)
T PRK13789         75 GPEDPLVAGFADWAAELGIPCF-GPDSYCAQVEGSKHFAKSLMKEAKIPT  123 (426)
T ss_pred             CCchHHHHHHHHHHHHcCCCcC-CCHHHHHHHHcCHHHHHHHHHHcCCCC
Confidence            2211122345566778888865 432110  00 1223445556666664

>PRK07109 short chain dehydrogenase; Provisional

Probab=87.04  E-value=5.5  Score=37.74  Aligned_cols=83  Identities=25%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++...   ..++ -+..|.+
T Consensus         9 k~vlITGas~gIG~~la~~la~-~G~~Vvl-~~R~~--~~l~~~~--------------~~l~~~---g~~~~~v~~Dv~   67 (334)
T PRK07109          9 QVVVITGASAGVGRATARAFAR-RGAKVVL-LARGE--EGLEALA--------------AEIRAA---GGEALAVVADVA   67 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHc---CCcEEEEEecCC
Confidence            5799999999999999999875 5788765 34431  1111110              111110   0111 2456888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++.+.+.+..+.+.  ++++++-..|
T Consensus        68 d~~~v~~~~~~~~~~~g~iD~lInnAg   94 (334)
T PRK07109         68 DAEAVQAAADRAEEELGPIDTWVNNAM   94 (334)
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            888877776665543  5778776554

>PRK06139 short chain dehydrogenase; Provisional

Probab=86.94  E-value=4.9  Score=38.12  Aligned_cols=81  Identities=27%  Similarity=0.275  Sum_probs=51.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      ..|.|.|++|.+|+.+++.+.+ .+.+|+. ++++.  ....++.              +++-+     ...+   +..|
T Consensus         8 k~vlITGAs~GIG~aia~~la~-~G~~Vvl-~~R~~--~~l~~~~--------------~~~~~-----~g~~~~~~~~D   64 (330)
T PRK06139          8 AVVVITGASSGIGQATAEAFAR-RGARLVL-AARDE--EALQAVA--------------EECRA-----LGAEVLVVPTD   64 (330)
T ss_pred             CEEEEcCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEee
Confidence            4699999999999999999885 5788764 44432  1111110              11111     1222   3468


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .+.++...+.+..+.+.  ++++++-..|
T Consensus        65 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG   93 (330)
T PRK06139         65 VTDADQVKALATQAASFGGRIDVWVNNVG   93 (330)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            88888887777766654  5788877665

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=86.93  E-value=3.9  Score=38.99  Aligned_cols=98  Identities=12%  Similarity=0.122  Sum_probs=66.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.|.|..|+.|.+..++-.+. .....++||+....+  .+..+-+|+  --.+..|++++++-.     ..+=|+|||+
T Consensus       137 ~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N--~~Fve~lg~--Yd~V~~Yd~i~~l~~-----~~~~v~VDfa  207 (314)
T PF11017_consen  137 AQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARN--VAFVESLGC--YDEVLTYDDIDSLDA-----PQPVVIVDFA  207 (314)
T ss_pred             cEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcc--hhhhhccCC--ceEEeehhhhhhccC-----CCCEEEEECC
Confidence            369999999999999999988 677899999887543  222222221  113455788887743     4667999999


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCCCH
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHIQL  142 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~~~  142 (300)
                      -...+...+..-+..  ...+.||-|.++.
T Consensus       208 G~~~~~~~Lh~~l~d~l~~~~~VG~th~~~  237 (314)
T PF11017_consen  208 GNGEVLAALHEHLGDNLVYSCLVGATHWDK  237 (314)
T ss_pred             CCHHHHHHHHHHHhhhhhEEEEEEccCccc
Confidence            766665555443332  2466788887754

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=86.92  E-value=5.2  Score=37.86  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=54.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      |||.|+|+ |.||..+.-.+.+.. ..+.-+...+.      .|-.+....+ ..........+.+. +      .++|+
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~-~------~~~Dl   70 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGG-NFTTPVVAATDAEA-L------GPADL   70 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCC-ccccccccccChhh-c------CCCCE
Confidence            68999998 999999999888665 33333332210      1211111111 00001111222222 2      47899


Q ss_pred             EEEcCCchhHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHHhhhC
Q 022250          110 VIDFTDASTVYDNVKQATAF---GMRSVVYVPHIQLETVSALSAFCDKA  155 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~---G~~vVigTTG~~~e~~~~L~~~a~~~  155 (300)
                      ||-++-.-.+.+.+......   ...|++==-|+.-++  .|.+...+.
T Consensus        71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~~  117 (307)
T COG1893          71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPKE  117 (307)
T ss_pred             EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCcc
Confidence            99887554444444433332   323333223775433  666666553

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=86.79  E-value=2  Score=44.26  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=26.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      -.|.|.|++|++|+.+++.+.+ .+++++++..
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk-~G~~Vval~R  112 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLK-LGFRVRAGVR  112 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeC
Confidence            4699999999999999999875 5888877543

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=86.78  E-value=11  Score=37.13  Aligned_cols=159  Identities=15%  Similarity=0.079  Sum_probs=82.7

Q ss_pred             ceEEEEcCCchHHHHHHH--HHH---hcCCcEEEEEEecCCC-----Ccchhhhh-cCcCCCCcceecCHHHHHhccccc
Q 022250           36 IKVIINGAVKEIGRAAVI--AVT---KARGMEVAGAIDSHSV-----GEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQS  104 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~--~i~---~~~~~eLvg~vd~~~~-----g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~  104 (300)
                      +||+|+|+ |.||....-  .+.   ...+.+|+ .+|.+..     ..+....+ .......+..++|+++++      
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal------   72 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREAL------   72 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh------
Confidence            58999998 999998443  343   34455654 4675320     11111111 110123455678998888      


Q ss_pred             CCccEEEEcCCchhHHH---HHHHHHHcCCCEEEeCC-C---CC-----HHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250          105 KARAVVIDFTDASTVYD---NVKQATAFGMRSVVYVP-H---IQ-----LETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~---~~~~al~~G~~vVigTT-G---~~-----~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll  172 (300)
                      .++|+||....+.....   .-+..+++|+---++-| |   +.     -....+|.+..++. .|=.+.-||+=-+.++
T Consensus        73 ~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~-~p~a~~i~~tNPv~i~  151 (423)
T cd05297          73 DGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEEL-CPDAWLLNYANPMAEL  151 (423)
T ss_pred             cCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHH-CCCCEEEEcCChHHHH
Confidence            48999997655433322   22466777765333323 2   21     11222333333321 1234445677677777


Q ss_pred             HHHHHHhccCCCCeEEEEccCCCCCCCchHHHHHHHHHH
Q 022250          173 QQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLS  211 (300)
Q Consensus       173 ~~~a~~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~i~  211 (300)
                      .+++....+    +.++-+=    |.|.++...+++.+.
T Consensus       152 t~~~~k~~~----~rviG~c----~~~~~~~~~~a~~l~  182 (423)
T cd05297         152 TWALNRYTP----IKTVGLC----HGVQGTAEQLAKLLG  182 (423)
T ss_pred             HHHHHHhCC----CCEEEEC----CcHHHHHHHHHHHhC
Confidence            776655542    3444442    226667777777653

linked to 3D####ucture

>PRK08219 short chain dehydrogenase; Provisional

Probab=86.75  E-value=0.92  Score=39.41  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=25.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      |+++.|.|++|.+|+.+++.+.+.  .+++++
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~   32 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT--HTLLLG   32 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh--CCEEEE
Confidence            568999999999999999998865  676654

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.71  E-value=5.4  Score=38.28  Aligned_cols=94  Identities=20%  Similarity=0.196  Sum_probs=52.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|+|+|+ |.+|..-++.... =++++++ +|+..  +                  .-+++++.    ..+|.-|||+-
T Consensus       183 ~~vgI~Gl-GGLGh~aVq~AKA-MG~rV~v-is~~~--~------------------kkeea~~~----LGAd~fv~~~~  235 (360)
T KOG0023|consen  183 KWVGIVGL-GGLGHMAVQYAKA-MGMRVTV-ISTSS--K------------------KKEEAIKS----LGADVFVDSTE  235 (360)
T ss_pred             cEEEEecC-cccchHHHHHHHH-hCcEEEE-EeCCc--h------------------hHHHHHHh----cCcceeEEecC
Confidence            68999998 6699999886654 5888886 44321  0                  11344432    35666666663


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeE
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC  159 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~i  159 (300)
                      -..-.+.+..++.-+++-|+--   ++..++.+..+.+.+|.-+
T Consensus       236 d~d~~~~~~~~~dg~~~~v~~~---a~~~~~~~~~~lk~~Gt~V  276 (360)
T KOG0023|consen  236 DPDIMKAIMKTTDGGIDTVSNL---AEHALEPLLGLLKVNGTLV  276 (360)
T ss_pred             CHHHHHHHHHhhcCcceeeeec---cccchHHHHHHhhcCCEEE
Confidence            3334445555556665555421   2222334555555555433

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=86.67  E-value=0.95  Score=42.21  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=26.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .+|.|+|+ |.+|++++..+.+ .+++=+-+++++
T Consensus       126 k~vlvlGa-GGaarai~~aL~~-~G~~~i~I~nRt  158 (282)
T TIGR01809       126 FRGLVIGA-GGTSRAAVYALAS-LGVTDITVINRN  158 (282)
T ss_pred             ceEEEEcC-cHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            58999998 9999999998875 466555567764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=86.64  E-value=1.4  Score=43.15  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=21.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA   58 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~   58 (300)
                      ++||+|+|++|++|..++-.+...
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~   67 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASG   67 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhc
Confidence            599999999899999999988654

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK05872 short chain dehydrogenase; Provisional

Probab=86.63  E-value=8.4  Score=35.52  Aligned_cols=81  Identities=26%  Similarity=0.366  Sum_probs=51.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE---EEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---VID  112 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ..+.++               .+.+.     ...++   ..|
T Consensus        10 k~vlItGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~l~~~---------------~~~l~-----~~~~~~~~~~D   65 (296)
T PRK05872         10 KVVVVTGAARGIGAELARRLHA-RGAKLAL-VDLEE--AELAAL---------------AAELG-----GDDRVLTVVAD   65 (296)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHhc-----CCCcEEEEEec
Confidence            5799999999999999999875 5777654 34321  111111               11111     12222   268


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .+.++.+.+.+..+.+.  ++++||-..|.
T Consensus        66 v~d~~~v~~~~~~~~~~~g~id~vI~nAG~   95 (296)
T PRK05872         66 VTDLAAMQAAAEEAVERFGGIDVVVANAGI   95 (296)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            88888887777766553  57888877663

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.48  E-value=4.1  Score=35.98  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=26.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++...+
T Consensus         6 k~ilItGas~gIG~~la~~l~~-~G~~vv~~~~   37 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAR-EGARVVVNYH   37 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHH-CCCeEEEEcC
Confidence            4799999999999999998874 5788775443

>PRK06483 dihydromonapterin reductase; Provisional

Probab=86.43  E-value=9.2  Score=33.56  Aligned_cols=80  Identities=15%  Similarity=0.189  Sum_probs=49.2

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVID  112 (300)
                      |+.++.|.|++|.+|+.+++.+.+ .+.+++.. +++.  .+..                 +++-.     .... +..|
T Consensus         1 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~-~r~~--~~~~-----------------~~~~~-----~~~~~~~~D   54 (236)
T PRK06483          1 MPAPILITGAGQRIGLALAWHLLA-QGQPVIVS-YRTH--YPAI-----------------DGLRQ-----AGAQCIQAD   54 (236)
T ss_pred             CCceEEEECCCChHHHHHHHHHHH-CCCeEEEE-eCCc--hhHH-----------------HHHHH-----cCCEEEEcC
Confidence            346799999999999999998875 57787754 4322  1100                 11100     1111 3467


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .+.++...+.+....+.  ++.+++-..|
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag   83 (236)
T PRK06483         55 FSTNAGIMAFIDELKQHTDGLRAIIHNAS   83 (236)
T ss_pred             CCCHHHHHHHHHHHHhhCCCccEEEECCc
Confidence            77777777766665542  3777776655

>PRK07806 short chain dehydrogenase; Provisional

Probab=86.36  E-value=8.3  Score=34.01  Aligned_cols=85  Identities=16%  Similarity=0.201  Sum_probs=49.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++.......  .....+               .+.+..  ...+.. +..|.+
T Consensus         7 k~vlItGasggiG~~l~~~l~~-~G~~V~~~~r~~~--~~~~~~---------------~~~l~~--~~~~~~~~~~D~~   66 (248)
T PRK07806          7 KTALVTGSSRGIGADTAKILAG-AGAHVVVNYRQKA--PRANKV---------------VAEIEA--AGGRASAVGADLT   66 (248)
T ss_pred             cEEEEECCCCcHHHHHHHHHHH-CCCEEEEEeCCch--HhHHHH---------------HHHHHh--cCCceEEEEcCCC
Confidence            6799999999999999998875 5788776543211  001100               011110  001122 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++.....+....+.  ++++|+-..|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~   94 (248)
T PRK07806         67 DEESVAALMDTAREEFGGLDALVLNASG   94 (248)
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence            888776666655443  57787766654

>cd08293 PTGR2 Prostaglandin reductase

Probab=86.35  E-value=2.1  Score=39.91  Aligned_cols=97  Identities=12%  Similarity=0.031  Sum_probs=49.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -+|.|+|++|.+|+..++.+. ..+. ++++....+.....+.+..|.   ..+..+  .++.+.+.+.. ...+|+++|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk-~~G~~~Vi~~~~s~~~~~~~~~~lGa---~~vi~~~~~~~~~~i~~~~-~~gvd~vid  230 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDEKCQLLKSELGF---DAAINYKTDNVAERLRELC-PEGVDVYFD  230 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHhcCC---cEEEECCCCCHHHHHHHHC-CCCceEEEE
Confidence            479999999999999998766 4577 677765432100001110121   001111  23333332111 135788888


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeC
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      ++......+.+......|.=+.+|.
T Consensus       231 ~~g~~~~~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         231 NVGGEISDTVISQMNENSHIILCGQ  255 (345)
T ss_pred             CCCcHHHHHHHHHhccCCEEEEEee
Confidence            7765544344333334455444664

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=86.35  E-value=1.9  Score=40.58  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=23.2

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      |+|+|+ |.+|..++-.+....-+.=+..+|..
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~   32 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVN   32 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            589998 99999999888765433334467753

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=86.31  E-value=3.6  Score=38.78  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ||.|+|+ |.+|..+++.+.. .++.=+-++|.
T Consensus         1 kVlVVGa-GGlG~eilknLal-~Gvg~I~IvD~   31 (291)
T cd01488           1 KILVIGA-GGLGCELLKNLAL-SGFRNIHVIDM   31 (291)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCeEEEECC
Confidence            6999998 9999999999874 57666667773

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=86.29  E-value=1.5  Score=43.98  Aligned_cols=152  Identities=13%  Similarity=0.148  Sum_probs=76.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE-----ecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI-----DSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v-----d~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      -.+|+|+|+ |..|++++..+. +.++.++-++     |.+..+.+.   +   .+-|.++ .++++++.      .+|+
T Consensus        36 gKtIaIIGy-GSqG~AqAlNLr-dSGvnVvvglr~~~id~~~~s~~k---A---~~dGF~v-~~~~Ea~~------~ADv  100 (487)
T PRK05225         36 GKKIVIVGC-GAQGLNQGLNMR-DSGLDISYALRKEAIAEKRASWRK---A---TENGFKV-GTYEELIP------QADL  100 (487)
T ss_pred             CCEEEEEcc-CHHHHHHhCCCc-cccceeEEeccccccccccchHHH---H---HhcCCcc-CCHHHHHH------hCCE
Confidence            378999998 999998887655 5577776333     211111111   1   1124444 57888884      7999


Q ss_pred             EEEcCCchhHH---HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCe
Q 022250          110 VIDFTDASTVY---DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV  186 (300)
Q Consensus       110 VIDfT~p~~~~---~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~di  186 (300)
                      |+-.++-+...   +.+...++.|.-+. =.-||+-...  ....  ..++-++.-+-=+.|-.+=..+.+     ...+
T Consensus       101 VviLlPDt~q~~v~~~i~p~LK~Ga~L~-fsHGFni~~~--~i~~--~~dvdVimvAPKgpG~~vR~~y~~-----G~Gv  170 (487)
T PRK05225        101 VINLTPDKQHSDVVRAVQPLMKQGAALG-YSHGFNIVEV--GEQI--RKDITVVMVAPKCPGTEVREEYKR-----GFGV  170 (487)
T ss_pred             EEEcCChHHHHHHHHHHHhhCCCCCEEE-ecCCceeeeC--ceeC--CCCCcEEEECCCCCCchHHHHHhc-----CCCc
Confidence            99666443221   12222333333222 2347763211  1111  123555544444556433333322     1122


Q ss_pred             EEEEccCCCCCCCchHHHHHHHHHHh
Q 022250          187 EIVESRPNARDFPSPDATQIANNLSN  212 (300)
Q Consensus       187 eIiE~Hh~K~DaPSGTA~~l~~~i~~  212 (300)
                      --.=.=|.+.| |||.|..+|.+++.
T Consensus       171 p~l~AV~~~qD-~~g~a~~~ala~a~  195 (487)
T PRK05225        171 PTLIAVHPEND-PKGEGMAIAKAWAA  195 (487)
T ss_pred             eEEEEEeecCC-CCchHHHHHHHHHH
Confidence            11112123446 88999988888765

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=86.27  E-value=2.8  Score=34.46  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |+|+|+ |.||..++-.+.+ .+.++.-+..
T Consensus         1 I~I~G~-GaiG~~~a~~L~~-~g~~V~l~~r   29 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQ-AGHDVTLVSR   29 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEECc-CHHHHHHHHHHHH-CCCceEEEEc
Confidence            789998 9999999998876 7777655443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=86.20  E-value=6.7  Score=34.85  Aligned_cols=87  Identities=17%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCH-HHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDL-TMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl-~~~l~~~~~~~~~DVVIDf  113 (300)
                      -||.|+|+ |++|..-++.+.+ .+..++ ++++.. ..+..++.   ....+... .++ .+.+      ..+|.||-.
T Consensus        10 k~vlVvGg-G~va~rk~~~Ll~-~ga~Vt-Vvsp~~-~~~l~~l~---~~~~i~~~~~~~~~~dl------~~~~lVi~a   76 (205)
T TIGR01470        10 RAVLVVGG-GDVALRKARLLLK-AGAQLR-VIAEEL-ESELTLLA---EQGGITWLARCFDADIL------EGAFLVIAA   76 (205)
T ss_pred             CeEEEECc-CHHHHHHHHHHHH-CCCEEE-EEcCCC-CHHHHHHH---HcCCEEEEeCCCCHHHh------CCcEEEEEC
Confidence            48999998 9999998888875 466554 555532 12233332   12233221 111 2233      368888867


Q ss_pred             CCc-hhHHHHHHHHHHcCCCEEE
Q 022250          114 TDA-STVYDNVKQATAFGMRSVV  135 (300)
Q Consensus       114 T~p-~~~~~~~~~al~~G~~vVi  135 (300)
                      |.- +........|.+.|+++-+
T Consensus        77 t~d~~ln~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        77 TDDEELNRRVAHAARARGVPVNV   99 (205)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEE
Confidence            644 3456677788888988843

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12742 oxidoreductase; Provisional

Probab=86.13  E-value=2  Score=37.72  Aligned_cols=30  Identities=30%  Similarity=0.360  Sum_probs=25.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus         7 k~vlItGasggIG~~~a~~l~~-~G~~v~~~   36 (237)
T PRK12742          7 KKVLVLGGSRGIGAAIVRRFVT-DGANVRFT   36 (237)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEe
Confidence            5799999999999999998875 57777654

>PRK07589 ornithine cyclodeaminase; Validated

Probab=85.95  E-value=2.1  Score=41.26  Aligned_cols=93  Identities=13%  Similarity=0.069  Sum_probs=60.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC--CCcceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~--~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      -+++|+|+ |..++.+++++..-..++=+-+++++.  ..+..++..-..  ..+.+.+|+++++.      ++|||+-.
T Consensus       130 ~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIIvta  200 (346)
T PRK07589        130 RTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDP--AATAKLARNLAGPGLRIVACRSVAEAVE------GADIITTV  200 (346)
T ss_pred             cEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCH--HHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEEe
Confidence            57999997 999999999888766777777787653  222222210011  23455789999984      79999977


Q ss_pred             CCchhHHHHH-HHHHHcCCCEE-EeC
Q 022250          114 TDASTVYDNV-KQATAFGMRSV-VYV  137 (300)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV-igT  137 (300)
                      |+.......+ ...++-|.||. ||+
T Consensus       201 T~S~~~~Pvl~~~~lkpG~hV~aIGs  226 (346)
T PRK07589        201 TADKTNATILTDDMVEPGMHINAVGG  226 (346)
T ss_pred             cCCCCCCceecHHHcCCCcEEEecCC
Confidence            7422111222 24668898877 564

>PRK07023 short chain dehydrogenase; Provisional

Probab=85.91  E-value=1.1  Score=39.66  Aligned_cols=31  Identities=23%  Similarity=0.498  Sum_probs=26.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      |++|.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~   31 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGV   31 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHh-CCCEEEEE
Confidence            46899999999999999999875 58887764

>PRK07478 short chain dehydrogenase; Provisional

Probab=85.91  E-value=6.2  Score=35.11  Aligned_cols=84  Identities=19%  Similarity=0.199  Sum_probs=51.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++.. +++.  .+..++.              +++.+.   ..++. +..|++
T Consensus         7 k~~lItGas~giG~~ia~~l~~-~G~~v~~~-~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D~~   65 (254)
T PRK07478          7 KVAIITGASSGIGRAAAKLFAR-EGAKVVVG-ARRQ--AELDQLV--------------AEIRAE---GGEAVALAGDVR   65 (254)
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHHH--------------HHHHhc---CCcEEEEEcCCC
Confidence            4799999999999999999875 57787654 4321  1111110              111100   01122 345888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~id~li~~ag~   93 (254)
T PRK07478         66 DEAYAKALVALAVERFGGLDIAFNNAGT   93 (254)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            888887777766554  57888866653

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=85.90  E-value=8.7  Score=33.48  Aligned_cols=85  Identities=24%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+..+..  .....+              .+++...   ..... +-.|++
T Consensus         6 ~~vlItG~sg~iG~~l~~~l~~-~G~~v~~~~~~~~--~~~~~~--------------~~~~~~~---~~~~~~~~~Dl~   65 (248)
T PRK05557          6 KVALVTGASRGIGRAIAERLAA-QGANVVINYASSE--AGAEAL--------------VAEIGAL---GGKALAVQGDVS   65 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCch--hHHHHH--------------HHHHHhc---CCceEEEEcCCC
Confidence            5799999999999999999885 4788755543321  000000              0111100   01222 234888


Q ss_pred             CchhHHHHHHHHHH--cCCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATA--FGMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~--~G~~vVigTTG~  140 (300)
                      .++...+.+....+  .++..|+-..|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~   93 (248)
T PRK05557         66 DAESVERAVDEAKAEFGGVDILVNNAGI   93 (248)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            88887776665554  257788776653

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=85.85  E-value=3.5  Score=45.26  Aligned_cols=96  Identities=14%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCc-----EEEEEEe----------------cCCCCcchhhhh-----cCcCCCCcce
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAID----------------SHSVGEDIGMVC-----DMEQPLEIPV   90 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~-----eLvg~vd----------------~~~~g~d~~~~~-----g~~~~~gv~v   90 (300)
                      ||.|+|| |.+|..+++.+. ..++     --+-++|                ....|+.-.+.+     -+.+...+..
T Consensus       421 kVlvvGa-GGlG~e~lknLa-l~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~  498 (1008)
T TIGR01408       421 NIFLVGC-GAIGCEMLKNFA-LMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDA  498 (1008)
T ss_pred             cEEEECC-ChHHHHHHHHHH-HhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEEE


Q ss_pred             ecCH----------HHHHhcccccCCccEEEEcC-CchhHHHHHHHHHHcCCCEE-EeCCCC
Q 022250           91 MSDL----------TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSV-VYVPHI  140 (300)
Q Consensus        91 ~~dl----------~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vV-igTTG~  140 (300)
                      +...          ++.+      .++|+||++. ..++-.-.-..|.++++|+| .||.|+
T Consensus       499 ~~~~v~~~~e~i~~~~f~------~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~  554 (1008)
T TIGR01408       499 HQNRVGPETETIFNDEFY------EKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGT  554 (1008)
T ss_pred             EEeecChhhhhhhhHHHh------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCc

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PLN02306 hydroxypyruvate reductase

Probab=85.84  E-value=2.4  Score=41.48  Aligned_cols=71  Identities=20%  Similarity=0.166  Sum_probs=42.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhc--Cc----CCCCcceecCHHHHHhcccccC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCD--ME----QPLEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~---~~~g--~~----~~~gv~v~~dl~~~l~~~~~~~  105 (300)
                      -.+|+|+|. |++|+.+++.+...=++++.+ +|+... .+..   ...|  +.    ...++..+.++++++.      
T Consensus       165 gktvGIiG~-G~IG~~vA~~l~~~fGm~V~~-~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------  235 (386)
T PLN02306        165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQS-TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------  235 (386)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhhhhhhhhcccccccccccccccccCCHHHHHh------
Confidence            368999997 999999999875334888764 665321 0100   0000  00    0011222468999995      


Q ss_pred             CccEEEEcC
Q 022250          106 ARAVVIDFT  114 (300)
Q Consensus       106 ~~DVVIDfT  114 (300)
                      .+|+|+-..
T Consensus       236 ~sDiV~lh~  244 (386)
T PLN02306        236 EADVISLHP  244 (386)
T ss_pred             hCCEEEEeC
Confidence            789988654

>PRK07578 short chain dehydrogenase; Provisional

Probab=85.74  E-value=4.9  Score=34.44  Aligned_cols=28  Identities=39%  Similarity=0.581  Sum_probs=23.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg   65 (300)
                      |++.|.|++|.+|+.+++.+.+.  .+++.
T Consensus         1 ~~vlItGas~giG~~la~~l~~~--~~vi~   28 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR--HEVIT   28 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc--CcEEE
Confidence            37999999999999999998765  56655

>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=85.72  E-value=5.7  Score=36.44  Aligned_cols=113  Identities=13%  Similarity=0.130  Sum_probs=55.8

Q ss_pred             CcceEEEEcCCchHHHH-HHHHHHh----cCCcEEEEEEecCCCCc-chhhhhcCcCCCCcceecCHHHHHhcccccCCc
Q 022250           34 SNIKVIINGAVKEIGRA-AVIAVTK----ARGMEVAGAIDSHSVGE-DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~~i~~----~~~~eLvg~vd~~~~g~-d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (300)
                      |++||+|+=+ |++|.. ++++++.    .+|+++--+-...+.+. ++.              +.....++    +-+|
T Consensus         1 mvvKiGiiKl-GNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~--------------~~~~~~~~----~~~p   61 (277)
T PRK00994          1 MVVKIGIIKL-GNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVE--------------EVVKKMLE----EWKP   61 (277)
T ss_pred             CeEEEEEEEe-cccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHH--------------HHHHHHHH----hhCC
Confidence            5799999998 999987 4444432    23443321111111111 000              00112222    2479


Q ss_pred             cEEEEcCCchhH--HHHHH-HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCC-CeEEEcCCCcHHH
Q 022250          108 AVVIDFTDASTV--YDNVK-QATAFGMRSVVYVPHIQLETVSALSAFCDKAS-MGCLIAPTLSIGS  169 (300)
Q Consensus       108 DVVIDfT~p~~~--~~~~~-~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~-i~iv~a~N~SiGv  169 (300)
                      |.+|-.|+..++  ..-++ ...+.|+|.|+=+-+-+....++|    ++.| -.+++-+.==||.
T Consensus        62 Df~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l----~~~g~GYIivk~DpMIGA  123 (277)
T PRK00994         62 DFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAM----EEQGLGYIIVKADPMIGA  123 (277)
T ss_pred             CEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHH----HhcCCcEEEEecCccccc
Confidence            998866642222  22233 334679999987766554332333    3333 3455555555554

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=85.64  E-value=2.4  Score=36.64  Aligned_cols=97  Identities=16%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .++.|+|+ |+.|+-+++.+... +..+ -+++.++. +.+...     --|..+ .++++++      ..+|++|-.|-
T Consensus        24 k~vvV~GY-G~vG~g~A~~lr~~-Ga~V-~V~e~DPi-~alqA~-----~dGf~v-~~~~~a~------~~adi~vtaTG   87 (162)
T PF00670_consen   24 KRVVVIGY-GKVGKGIARALRGL-GARV-TVTEIDPI-RALQAA-----MDGFEV-MTLEEAL------RDADIFVTATG   87 (162)
T ss_dssp             SEEEEE---SHHHHHHHHHHHHT-T-EE-EEE-SSHH-HHHHHH-----HTT-EE-E-HHHHT------TT-SEEEE-SS
T ss_pred             CEEEEeCC-CcccHHHHHHHhhC-CCEE-EEEECChH-HHHHhh-----hcCcEe-cCHHHHH------hhCCEEEECCC
Confidence            58999998 99999999998754 5544 34554321 111111     123333 3577877      37898887775


Q ss_pred             chhH--HHHHHHHHHcCCCEEEeCCC-CCHH-HHHHHHHH
Q 022250          116 ASTV--YDNVKQATAFGMRSVVYVPH-IQLE-TVSALSAF  151 (300)
Q Consensus       116 p~~~--~~~~~~al~~G~~vVigTTG-~~~e-~~~~L~~~  151 (300)
                      +..+  .+++.   ..+-..++...| ++.| +.+.|.+.
T Consensus        88 ~~~vi~~e~~~---~mkdgail~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   88 NKDVITGEHFR---QMKDGAILANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             SSSSB-HHHHH---HS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred             CccccCHHHHH---HhcCCeEEeccCcCceeEeecccccc
Confidence            5442  34443   234445555554 4433 44455544

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=85.58  E-value=3  Score=37.46  Aligned_cols=85  Identities=19%  Similarity=0.271  Sum_probs=49.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      .++.|.|+++.+|+.+++.+.+ .+..++....++.  +......           ..++....     ..+ -+.+|+|
T Consensus         9 k~vlItGas~gIG~~ia~~l~~-~G~~v~~~~~~~~--~~~~~~~-----------~~~~~~~~-----~~~~~~~~D~~   69 (260)
T PRK08416          9 KTLVISGGTRGIGKAIVYEFAQ-SGVNIAFTYNSNV--EEANKIA-----------EDLEQKYG-----IKAKAYPLNIL   69 (260)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHHH-----------HHHHHhcC-----CceEEEEcCCC
Confidence            5788999999999999999885 6788765443321  1111110           00111000     111 2456888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+....+.  .+++++-.-|
T Consensus        70 ~~~~~~~~~~~~~~~~g~id~lv~nAg   96 (260)
T PRK08416         70 EPETYKELFKKIDEDFDRVDFFISNAI   96 (260)
T ss_pred             CHHHHHHHHHHHHHhcCCccEEEECcc
Confidence            888887777766543  4677765443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=85.56  E-value=15  Score=35.94  Aligned_cols=124  Identities=17%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e---cCHHHHHhcccccCCccE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAV  109 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DV  109 (300)
                      .+.+|.|+|+ |++|+.+++.+.+ .+.+++ ++|.+.  +....+..  .-.++.+ +   .+.+.+.+.  .-.++|+
T Consensus       230 ~~~~iiIiG~-G~~g~~l~~~L~~-~~~~v~-vid~~~--~~~~~~~~--~~~~~~~i~gd~~~~~~L~~~--~~~~a~~  300 (453)
T PRK09496        230 PVKRVMIVGG-GNIGYYLAKLLEK-EGYSVK-LIERDP--ERAEELAE--ELPNTLVLHGDGTDQELLEEE--GIDEADA  300 (453)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHHH--HCCCCeEEECCCCCHHHHHhc--CCccCCE
Confidence            3688999998 9999999998764 567765 455432  11111110  0012322 2   233333210  1246788


Q ss_pred             EEEcCCch-hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250          110 VIDFTDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (300)
Q Consensus       110 VIDfT~p~-~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l  171 (300)
                      ||-.+.-+ ........|.+.+.+-|+-... +++..+.+    +..|+-.+++|..-.+-.+
T Consensus       301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~-~~~~~~~~----~~~g~~~vi~p~~~~~~~~  358 (453)
T PRK09496        301 FIALTNDDEANILSSLLAKRLGAKKVIALVN-RPAYVDLV----EGLGIDIAISPRQATASEI  358 (453)
T ss_pred             EEECCCCcHHHHHHHHHHHHhCCCeEEEEEC-CcchHHHH----HhcCCCEEECHHHHHHHHH
Confidence            87555433 2233334556667665554332 33333333    4455667777776554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
1c3v_A	245	Dihydrodipicolinate Reductase From Mycobacterium Tu		3e-17
1yl5_A	247	Crystal Structure Of Mycobacterium Tuberculosis Dih		3e-17
1yl6_A	245	Crystal Structure Of Mycobacterium Tuberculosis Dih		3e-17

>pdb|1C3V|A Chain A, Dihydrodipicolinate Reductase From Mycobacterium Tuberculosis Complexed With Nadph And Pdc Length = 245

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 7/197 (3%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSI 167
           VVIDFT    V  N++     G+ +VV       E    + ++   K +   LIAP  +I
Sbjct: 48  VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
           G++L    A  A+  + + E++E   P+  D PS  A + A  ++    G   N +  ST
Sbjct: 108 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 167
Query: 225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
            +  ARG  +  DG+ VH++ L GL +   V F   GE  +I+HD  D  S +PG++LA+
Sbjct: 168 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 225
Query: 284 RKVVHLKNLVYGLEKFL 300
           R++     L  GLE  L
Sbjct: 226 RRIAERPGLTVGLEPLL 242

>pdb|1YL5|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A) Length = 247

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 7/197 (3%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSI 167
           VVIDFT    V  N++     G+ +VV       E    + ++   K +   LIAP  +I
Sbjct: 50  VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 109
Query: 168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
           G++L    A  A+  + + E++E   P+  D PS  A + A  ++    G   N +  ST
Sbjct: 110 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 169
Query: 225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
            +  ARG  +  DG+ VH++ L GL +   V F   GE  +I+HD  D  S +PG++LA+
Sbjct: 170 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 227
Query: 284 RKVVHLKNLVYGLEKFL 300
           R++     L  GLE  L
Sbjct: 228 RRIAERPGLTVGLEPLL 244

>pdb|1YL6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B) Length = 245

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 7/197 (3%)
Query: 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSI 167
           VVIDFT    V  N++     G+ +VV       E    + ++   K +   LIAP  +I
Sbjct: 48  VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 168 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 224
           G++L    A  A+  + + E++E   P+  D PS  A + A  ++    G   N +  ST
Sbjct: 108 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 167
Query: 225 DVK-ARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 283
            +  ARG  +  DG+ VH++ L GL +   V F   GE  +I+HD  D  S +PG++LA+
Sbjct: 168 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 225
Query: 284 RKVVHLKNLVYGLEKFL 300
           R++     L  GLE  L
Sbjct: 226 RRIAERPGLTVGLEPLL 242

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	3e-38
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	5e-11
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	2e-10
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	6e-10
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	1e-05
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Length = 245

 Score =  134 bits (340), Expect = 3e-38
 Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 45/276 (16%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           ++V + GA  ++G   V AV  A  + ++  +D    G+ + ++ D          ++  
Sbjct: 1   MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD---AGDPLSLLTDGN--------TE-- 47

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSALSAF 151
                        VVIDFT    V  N++     G+ +VV    +    + + V +    
Sbjct: 48  -------------VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAE-RFQQVESWLV- 92

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES-RPNARDFPSPDATQ----I 206
             K +   LIAP  +IG++L    A  A+  + + E++E   P+  D PS  A +    I
Sbjct: 93  -AKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLI 151

Query: 207 ANNLSNLGQ--IYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
           A     L          +     ARG     DG+ VH++ L GL +   V F   GE  +
Sbjct: 152 AEARKGLPPNPDATSTSL---PGARGAD--VDGIPVHAVRLAGLVAHQEVLFGTEGETLT 206

Query: 265 IKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 300
           I+HD  D  S +PG++LA+R++     L  GLE  L
Sbjct: 207 IRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEPLL 242

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Length = 273

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 56/268 (20%), Positives = 94/268 (35%), Gaps = 66/268 (24%)

Query: 32  PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEI 88
             +NI+V I GA   +GR  + A     G+++  A++   S  +G D G +        +
Sbjct: 2   HDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGV 60

Query: 89  PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLET 144
            V S L  V           V IDFT      +++      G   V+    +      + 
Sbjct: 61  TVQSSLDAVKDDFD------VFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEA-GKQA 113

Query: 145 VSALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVESRPNA-RDFP 199
           +   +     A +  + A   S+G      LL++AA     +  ++EI+E+      D P
Sbjct: 114 IRDAA-----ADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYT-DIEIIEAHHRHKVDAP 167

Query: 200 SPDATQIAN--------NLSNLGQIYNREDISTDVKAR------------GQVLGEDGVR 239
           S  A  +          +L +   +Y+RE        R            G ++GE    
Sbjct: 168 SGTALAMGEAIAHALDKDLKDCA-VYSREGH---TGERVPGTIGFATVRAGDIVGE---- 219

Query: 240 VHSMVLPGLPSSTTVYFSRPGEVYSIKH 267
            H           T  F+  GE   I H
Sbjct: 220 -H-----------TAMFADIGERLEITH 235

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Length = 272

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 56/266 (21%), Positives = 99/266 (37%), Gaps = 67/266 (25%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S++K+ I GA   +GR  + AV  A    + GA+D   S  +G+D G      +   + +
Sbjct: 6   SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQTGVAL 63

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVS 146
             D+  V            +IDFT       ++  A    ++ V+    +    Q   + 
Sbjct: 64  TDDIERVC------AEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEP-QKAQLR 116

Query: 147 ALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVES--RPNARDFPS 200
           A         +  + +  +S+G      LL+ AA   +  Y ++EI+E+  R +  D PS
Sbjct: 117 AAG-----EKIALVFSANMSVGVNVTMKLLEFAAKQFAQGY-DIEIIEAHHR-HKVDAPS 169

Query: 201 PDATQIANNLSN-LGQ------IYNREDISTDVKAR------------GQVLGEDGVRVH 241
             A  +   ++   G+      +Y R  +      R            G ++G+     H
Sbjct: 170 GTALMMGETIAAATGRSLDDCAVYGRHGV---TGERDPSTIGFSAIRGGDIVGD-----H 221

Query: 242 SMVLPGLPSSTTVYFSRPGEVYSIKH 267
                      TV F+  GE   I H
Sbjct: 222 -----------TVLFAGIGERIEITH 236

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Length = 288

 Score = 58.0 bits (141), Expect = 6e-10
 Identities = 38/267 (14%), Positives = 90/267 (33%), Gaps = 68/267 (25%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
            ++++ + GA   +GR  + A+ + + +E+   +    S  V +D  ++   +  L + +
Sbjct: 20  GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRI 78

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVS 146
             D      +         ++DF+           A    +  ++    +    +   ++
Sbjct: 79  TDDPESAFSNTE------GILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKT-EEAQIA 131

Query: 147 ALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVES--RPNARDFPS 200
             +          + +  +S+G    + L+++AA +    + ++EI E     N  D PS
Sbjct: 132 DFA-----KYTTIVKSGNMSLGVNLLANLVKRAAKALDDDF-DIEIYEMHHA-NKVDSPS 184

Query: 201 PDATQIAN--------NLSNLGQIYNREDISTDVKAR------------GQVLGEDGVRV 240
             A  +           L N+  +  R         R            G V+G+     
Sbjct: 185 GTALLLGQAAAEGRNIMLKNVS-VNGRSGH---TGKREKGTIGFACSRGGTVIGD----- 235

Query: 241 HSMVLPGLPSSTTVYFSRPGEVYSIKH 267
           H           ++ F+   E   + H
Sbjct: 236 H-----------SITFAGENERIVLSH 251

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} Length = 243

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 43/266 (16%), Positives = 85/266 (31%), Gaps = 88/266 (33%)

Query: 34  SNIKVIINGAVKEIGR--AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM 91
           +++K+++ G     G     V  + + +G E+ G I++                      
Sbjct: 2   ASMKILLIGY----GAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQ---------- 47

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---------QL 142
                    I+  K   V IDF++ + ++  + +           +P +          L
Sbjct: 48  --------HIADVKGADVAIDFSNPNLLFPLLDEDFH--------LPLVVATTGEKEKLL 91

Query: 143 ETVSALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVESRPNA-RD 197
             +  LS      +M    +  +S G    + +L  A         ++E+ E+  N   D
Sbjct: 92  NKLDELS-----QNMPVFFSANMSYGVHALTKILAAAV--PLLDDFDIELTEAHHNKKVD 144

Query: 198 FPSPDA----TQIANNLSNLGQIYNREDISTDVKAR------------GQVLGEDGVRVH 241
            PS         I +   N+  +Y+R ++    + R            G ++GE     H
Sbjct: 145 APSGTLEKLYDVIVSLKENVTPVYDRHEL---NEKRQPQDIGIHSIRGGTIVGE-----H 196

Query: 242 SMVLPGLPSSTTVYFSRPGEVYSIKH 267
                       V F+   E   I H
Sbjct: 197 -----------EVLFAGTDETIQITH 211

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 Length = 228

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 47/243 (19%), Positives = 72/243 (29%), Gaps = 71/243 (29%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD 93
            ++K  I G    +G+  +  V   +G E+   +D +  G +     D            
Sbjct: 11  HHMKYGIVGYSGRMGQE-IQKVFSEKGHELVLKVDVN--GVEELDSPD------------ 55

Query: 94  LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSALS 149
                          VVIDF+    +   V     +    V+          L+ +  LS
Sbjct: 56  ---------------VVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEE-HLQMLRELS 99

Query: 150 AFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVESRPNA-RDFPSPDAT 204
                  +  + A   SIG       L +          +VEIVE+     +D PS   T
Sbjct: 100 -----KEVPVVQAYNFSIGINVLKRFLSELV--KVLEDWDVEIVETHHRFKKDAPS--GT 150

Query: 205 QIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYS 264
            I      L     +  +       G V G+     H            V F   GE   
Sbjct: 151 AIL-----LESALGKS-VPIHSLRVGGVPGD-----H-----------VVVFGNIGETIE 188

Query: 265 IKH 267
           IKH
Sbjct: 189 IKH 191

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 51/195 (26%)

Query: 137 VPHIQLETVSALS-AFCDKASMGCLIAPT------LSIGSILLQQAAISASF----HYKN 185
              +Q    S LS    D      +++            ++L +Q  +   F       N
Sbjct: 35  CKDVQDMPKSILSKEEIDH----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 186 ----VEIVESRPNARDFPSPDATQIANNLSNLGQIY-----NREDISTDVKARGQVLGE- 235
               +  +++        +    +  + L N  Q++     +R      ++   Q L E 
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLEL 147

Query: 236 ---DGVRVHSM------VLPGLP-SSTTVYFSRPGEVY--SIKHDITDVQSLMPGLILAI 283
                V +  +       +      S  V      +++  ++K+  +      P  +L +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS------PETVLEM 201

Query: 284 RKVVHLKNLVYGLEK 298
                L+ L+Y ++ 
Sbjct: 202 -----LQKLLYQIDP 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	100.0
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	100.0
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	100.0
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	100.0
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	100.0
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	100.0
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	99.83
4had_A	350	Probable oxidoreductase protein; structural genomi	99.72
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	99.69
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	99.69
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.68
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	99.68
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	99.68
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.68
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	99.68
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	99.68
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	99.66
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	99.66
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	99.66
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	99.66
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	99.66
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	99.66
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	99.65
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	99.65
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	99.65
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	99.65
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	99.64
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	99.64
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	99.64
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	99.64
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.64
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	99.63
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	99.63
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	99.63
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	99.63
1ydw_A	362	AX110P-like protein; structural genomics, protein	99.62
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	99.62
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	99.62
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	99.61
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	99.61
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	99.61
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	99.61
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	99.61
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	99.6
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	99.6
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	99.59
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	99.59
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	99.58
4h3v_A	390	Oxidoreductase domain protein; structural genomics	99.58
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	99.58
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	99.58
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	99.57
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	99.57
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	99.56
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.56
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	99.56
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	99.56
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	99.55
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	99.54
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	99.53
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	99.52
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.51
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	99.41
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	99.41
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	99.39
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	99.37
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	99.35
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	99.33
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	99.21
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	99.16
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	99.14
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	99.08
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	99.01
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.88
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	98.87
2g0t_A	350	Conserved hypothetical protein; structural genomic	98.84
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	98.84
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.81
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.81
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	98.74
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.73
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.71
2obn_A	349	Hypothetical protein; structural genomics, joint c	98.7
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.69
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	98.66
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.65
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	98.63
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	98.62
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	98.61
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	98.61
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	98.61
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	98.56
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	98.52
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.51
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	98.48
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	98.47
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	98.46
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.39
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.36
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.35
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.34
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.33
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.3
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.28
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	98.28
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.27
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.27
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.25
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.25
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.25
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	98.25
2csu_A	457	457AA long hypothetical protein; structural genomi	98.24
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.24
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	98.23
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.22
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.21
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	98.21
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.2
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.2
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	98.19
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	98.17
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.16
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.12
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	98.11
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.1
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	98.1
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.09
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.09
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	98.08
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.07
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.07
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.04
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.02
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	98.0
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	97.99
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.99
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.99
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.98
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.97
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	97.96
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	97.96
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	97.94
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	97.94
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.91
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	97.91
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	97.9
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.87
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	97.85
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	97.83
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.81
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.81
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.8
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.8
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.8
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.78
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	97.78
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.78
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.76
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	97.73
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.73
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.72
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.72
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.7
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.69
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.65
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.63
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.62
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	97.58
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.57
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.56
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.55
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	97.55
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.54
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	97.52
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	97.5
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.44
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.43
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.42
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.39
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.38
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.37
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	97.36
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.36
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.34
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.34
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.33
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.32
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	97.3
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.29
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	97.29
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.28
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.27
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	97.27
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	97.26
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.26
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.25
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.24
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.23
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	97.23
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.19
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.17
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.16
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	97.15
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.13
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.11
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.07
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.05
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.05
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.01
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	97.0
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.99
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.98
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.96
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.95
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.95
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	96.95
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.93
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.91
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.86
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.84
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.84
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.83
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.82
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.8
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.78
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.77
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	96.76
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.71
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.68
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.68
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.66
1vjp_A	394	MYO-inositol-1-phosphate synthase-related protein;	96.64
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	96.62
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.61
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.58
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.58
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.53
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.52
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.52
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.49
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.46
3cin_A	394	MYO-inositol-1-phosphate synthase-related protein;	96.43
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.4
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.4
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.35
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.35
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	96.34
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.32
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.3
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.28
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.27
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.25
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.23
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.21
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.19
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.18
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.18
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.17
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.16
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.16
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.16
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.15
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	96.15
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.13
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.12
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.1
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.09
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.05
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.05
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	96.04
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.04
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.03
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.02
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.0
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.98
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	95.97
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.97
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.96
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.95
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.93
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.92
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.89
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.87
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.86
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.86
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.85
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.84
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.83
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.82
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.81
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	95.8
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.78
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.77
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.74
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.73
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	95.71
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.65
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.62
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.61
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.6
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.56
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.49
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.46
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.44
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.38
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.37
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.37
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	95.36
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.33
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.32
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.32
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.32
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.3
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.3
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.23
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.21
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.18
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	95.18
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	95.18
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	95.18
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.15
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.14
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	95.12
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	95.12
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.11
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.06
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	95.05
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.03
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	95.02
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	95.01
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.99
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.95
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.91
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	94.91
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	94.91
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.89
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	94.87
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.87
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.84
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.83
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.83
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	94.78
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.74
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	94.7
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.7
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.67
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.65
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.64
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.62
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	94.59
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	94.53
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.52
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	94.46
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	94.43
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	94.42
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	94.42
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.41
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	94.34
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	94.34
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.29
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	94.25
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.24
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	94.23
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	94.21
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	94.17
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.16
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.15
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	94.14
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.12
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	94.09
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	94.05
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.04
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	94.0
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	93.97
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	93.96
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	93.94
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	93.92
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	93.91
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	93.9
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.89
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	93.89
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	93.88
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	93.86
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	93.84
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.84
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	93.83
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.8
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	93.8
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.78
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	93.71
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.71
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	93.71
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	93.71
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	93.71
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	93.69
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	93.68
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	93.66
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	93.59
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.51
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	93.5
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	93.44
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	93.44
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.42
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.42
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	93.4
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	93.38
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	93.33
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	93.32
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.3
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	93.26
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	93.24
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	93.21
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.16
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	93.15
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	93.15
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.14
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.13
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.08
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	93.06
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	93.04
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	92.96
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.93
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	92.93
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.86
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.84
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	92.84
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	92.8
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	92.79
4f6c_A	427	AUSA reductase domain protein; thioester reductase	92.69
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	92.63
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	92.62
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.59
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.57
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	92.56
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	92.43
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	92.38
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	92.37
4f6l_B	508	AUSA reductase domain protein; thioester reductase	92.29
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	92.23
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	92.22
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	92.2
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	92.16
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.11
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	92.09
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	92.08
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	92.06
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.0
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	91.98
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	91.97
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	91.97
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	91.91
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	91.89
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	91.75
4eye_A	342	Probable oxidoreductase; structural genomics, niai	91.75
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	91.72
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.7
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	91.57
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	91.47
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	91.42
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	91.42
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	91.41
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.4
3lp8_A	442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	91.37
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	91.32
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	91.32
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	91.31
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	91.31
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	91.29
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	91.24
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	91.24
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.23
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	91.21
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	91.19
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	91.17
3cxt_A	291	Dehydrogenase with different specificities; rossma	91.16
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	91.14
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	91.13
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	91.09
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	91.09
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	91.07
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	91.04
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	91.02
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	91.0
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	90.96
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	90.96
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	90.95
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.93
4e4y_A	244	Short chain dehydrogenase family protein; structur	90.9
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	90.89
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	90.86
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	90.86
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	90.81
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	90.75
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	90.73
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	90.71
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	90.69
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.66
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	90.61
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	90.59
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.58

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=100.00  E-value=1.6e-76  Score=549.25  Aligned_cols=251  Identities=15%  Similarity=0.189  Sum_probs=229.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      +|+||+|+||+|+||+.+++.+.++|+++|+|++|++   ..|+|+++++|+ .+.|+++++|++++++      ++|||
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~-~~~gv~v~~dl~~ll~------~aDVv   92 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGS-DFLGVRITDDPESAFS------NTEGI   92 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTC-SCCSCBCBSCHHHHTT------SCSEE
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhcc-CcCCceeeCCHHHHhc------CCCEE
Confidence            4699999998899999999999999999999999964   368999999988 4789999999999984      79999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccC---CCCeE
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH---YKNVE  187 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~---~~die  187 (300)
                      ||||+|+++.+++..|+++|+|+|+|||||++++.++|+++|++  +|++||||||+|+|||+++++.++++   .||+|
T Consensus        93 IDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~--~~~~~a~N~SiGv~ll~~l~~~aa~~l~~~~die  170 (288)
T 3ijp_A           93 LDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKY--TTIVKSGNMSLGVNLLANLVKRAAKALDDDFDIE  170 (288)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHTT--SEEEECSCCCHHHHHHHHHHHHHHHHSCTTSEEE
T ss_pred             EEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhCc--CCEEEECCCcHHHHHHHHHHHHHHHhcCCCCCEE
Confidence            99999999999999999999999999999999999999999987  99999999999999999998887765   47999


Q ss_pred             EEEccC-CCCCCCchHHHHHHHHHHhcC-------CccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccC
Q 022250          188 IVESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRP  259 (300)
Q Consensus       188 IiE~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~  259 (300)
                      |+|+|| +|+|||||||++|++.|++..       ..|+|++..+   .|.    +++|+|||+|+|+++|+|+|+|+++
T Consensus       171 IiE~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g---~r~----~~~i~i~s~R~g~ivg~h~V~f~~~  243 (288)
T 3ijp_A          171 IYEMHHANKVDSPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHTG---KRE----KGTIGFACSRGGTVIGDHSITFAGE  243 (288)
T ss_dssp             EEEEECTTCCCSSCHHHHHHHHHHHHHTTSCHHHHEEECGGGCCS---CCC----TTCEEEEEEECTTCCEEEEEEEEET
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHhCCCcccccccccccccC---CcC----CCCccEEEEECCCCCEEEEEEecCC
Confidence            999999 699999999999999997632       2466776543   442    4799999999999999999999999


Q ss_pred             CcEEEEEEEeCCccccHHHHHHHHHHhhccCCeeeeccccC
Q 022250          260 GEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL  300 (300)
Q Consensus       260 ~E~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL  300 (300)
                      +|+|||+|+|+||++||+|||+||+||.+|++|+|+|+|||
T Consensus       244 ~e~i~i~H~a~sR~~Fa~Ga~~Aa~~l~~~~~g~y~m~dvL  284 (288)
T 3ijp_A          244 NERIVLSHIAQERSIFANGALKAALWAKNHENGLYSMLDVL  284 (288)
T ss_dssp             TEEEEEEEEECCTHHHHHHHHHHHHHHTTCCSEEECHHHHH
T ss_pred             CcEEEEEEEeCcHHHHHHHHHHHHHHHhcCCCcEEeHHHHh
Confidence            99999999999999999999999999999999999999986

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=100.00  E-value=8.2e-76  Score=541.60  Aligned_cols=253  Identities=21%  Similarity=0.293  Sum_probs=228.8

Q ss_pred             CCCC-cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC
Q 022250           31 PPQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        31 ~~~~-~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      |..| ||||+|+||+|+||+.+++.+.++++++|++++|++   ..|+|+++++|.. + ++++++|++++++      +
T Consensus         2 ~~~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~-~-gv~v~~dl~~ll~------~   73 (272)
T 4f3y_A            2 PGSMSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ-T-GVALTDDIERVCA------E   73 (272)
T ss_dssp             ----CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCC-C-SCBCBCCHHHHHH------H
T ss_pred             CCCccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCC-C-CceecCCHHHHhc------C
Confidence            3334 699999998899999999999999999999999964   3688999998873 4 9999999999985      6


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccC---C
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH---Y  183 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~---~  183 (300)
                      +|||||||+|+++.+++..|+++|+|+|+|||||++++.++|+++|++  +|++||||||+|+|||+++++.++++   .
T Consensus        74 ~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~--~~vv~a~N~s~Gv~l~~~~~~~aa~~l~~~  151 (272)
T 4f3y_A           74 ADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEK--IALVFSANMSVGVNVTMKLLEFAAKQFAQG  151 (272)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTT--SEEEECSCCCHHHHHHHHHHHHHHHHTSSS
T ss_pred             CCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEECCCCHHHHHHHHHHHHHHHhcCcC
Confidence            899999999999999999999999999999999999999999999987  89999999999999999998888775   3


Q ss_pred             CCeEEEEccC-CCCCCCchHHHHHHHHHHhcC-------CccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEE
Q 022250          184 KNVEIVESRP-NARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVY  255 (300)
Q Consensus       184 ~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~-------~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~  255 (300)
                      ||+||+|+|| +|+|||||||++|++.|++..       ..|+|++..+   .|+    +++|+|||+|+|+++|+|+|+
T Consensus       152 ~diei~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g---~r~----~~~i~i~s~R~g~ivg~h~v~  224 (272)
T 4f3y_A          152 YDIEIIEAHHRHKVDAPSGTALMMGETIAAATGRSLDDCAVYGRHGVTG---ERD----PSTIGFSAIRGGDIVGDHTVL  224 (272)
T ss_dssp             CEEEEEEEECTTCCSSSCHHHHHHHHHHHHTTTCCHHHHEEECCCSCCC---SCC----TTCEEEEEEECTTCCEEEEEE
T ss_pred             CCEEEEEecCCCCCCCCCHHHHHHHHHHHHHhCcccccccccccccccC---CCC----CCccCEEEEECCCCceEEEEE
Confidence            7999999999 699999999999999998732       2467776543   554    489999999999999999999


Q ss_pred             EccCCcEEEEEEEeCCccccHHHHHHHHHHhhccCCeeeeccccC
Q 022250          256 FSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL  300 (300)
Q Consensus       256 f~~~~E~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL  300 (300)
                      |++++|+|||+|+|+||++||+|||+||+|+.+|++|+|+|+|||
T Consensus       225 f~~~~e~i~i~H~a~~R~~fa~Ga~~Aa~~~~~~~~g~y~m~dvl  269 (272)
T 4f3y_A          225 FAGIGERIEITHKSASRVSYAQGALRAARFLAGRDAGFFDMQDVL  269 (272)
T ss_dssp             EECSSEEEEEEEEECCTHHHHHHHHHHHHHHHTCSSEEECHHHHT
T ss_pred             EcCCCcEEEEEEEeCcHHHHHHHHHHHHHHHhcCCCcEEcHHHHh
Confidence            999999999999999999999999999999999999999999997

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=5.6e-73  Score=514.91  Aligned_cols=234  Identities=18%  Similarity=0.291  Sum_probs=211.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ||||+|+|| |+||+.+++.+.+.++ +|++++|++..           ...++++++|+++++       ++||+||||
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~-----------~~~gv~v~~dl~~l~-------~~DVvIDft   62 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPK-----------ATTPYQQYQHIADVK-------GADVAIDFS   62 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC-------------CCSCBCSCTTTCT-------TCSEEEECS
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCcc-----------ccCCCceeCCHHHHh-------CCCEEEEeC
Confidence            699999999 9999999999999999 99999997531           246789999998874       689999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCC--CCeEEEEcc
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR  192 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~H  192 (300)
                      +|+++.++++  +++|+|+|+|||||++++.++|+++|++  +|++||||||+|||||+++++.+++++  ||+||+|+|
T Consensus        63 ~p~a~~~~~~--l~~g~~vVigTTG~s~e~~~~l~~aa~~--~~v~~a~N~S~Gv~l~~~~~~~aa~~l~~~dieI~E~H  138 (243)
T 3qy9_A           63 NPNLLFPLLD--EDFHLPLVVATTGEKEKLLNKLDELSQN--MPVFFSANMSYGVHALTKILAAAVPLLDDFDIELTEAH  138 (243)
T ss_dssp             CHHHHHHHHT--SCCCCCEEECCCSSHHHHHHHHHHHTTT--SEEEECSSCCHHHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred             ChHHHHHHHH--HhcCCceEeCCCCCCHHHHHHHHHHHhc--CCEEEECCccHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999999997  9999999999999999999999999988  999999999999999999999988876  899999999


Q ss_pred             C-CCCCCCchHHHHHHHHHHhcC----CccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCCcEEEEEE
Q 022250          193 P-NARDFPSPDATQIANNLSNLG----QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH  267 (300)
Q Consensus       193 h-~K~DaPSGTA~~l~~~i~~~~----~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~E~iel~H  267 (300)
                      | +|+|||||||++|++.|..++    ..|+|++..+   .|.    +++|+|||+|+|+++|+|+|+|++++|+|||+|
T Consensus       139 H~~K~DaPSGTA~~la~~i~~~~~~~~~~~~r~~~~~---~r~----~~~i~i~s~R~g~ivg~h~v~f~~~~e~i~i~H  211 (243)
T 3qy9_A          139 HNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNE---KRQ----PQDIGIHSIRGGTIVGEHEVLFAGTDETIQITH  211 (243)
T ss_dssp             CTTCCSSSCHHHHHHHHHHHHHSTTCEEECCCTTTCC---CCC----TTEEEEEEEECTTCCEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHhcCcccccccccccccC---Ccc----CCcceEEEEECCCCcEEEEEEEcCCCcEEEEEE
Confidence            9 699999999999999993333    3466765432   442    479999999999999999999999999999999


Q ss_pred             EeCCccccHHHHHHHHHHhhccCCeeeecccc
Q 022250          268 DITDVQSLMPGLILAIRKVVHLKNLVYGLEKF  299 (300)
Q Consensus       268 ~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dv  299 (300)
                      +|+||++||+|||+||+||.+|++|+|+|+||
T Consensus       212 ~a~sR~~Fa~Ga~~Aa~~l~~~~~g~y~m~dv  243 (243)
T 3qy9_A          212 RAQSKDIFANGAIQAAERLVNKPNGFYTFDNL  243 (243)
T ss_dssp             EESCTHHHHHHHHHHHHHHTTSCSEEECTTTC
T ss_pred             EeCcHHHHHHHHHHHHHHHccCCCcEeccccC
Confidence            99999999999999999999999999999997

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=100.00  E-value=4e-71  Score=510.75  Aligned_cols=250  Identities=20%  Similarity=0.303  Sum_probs=225.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      +|||+|+||+|+||+.+++.+.+.++++|++++|++.   .|+++++++|+ .+.++++++|++++++      ++||||
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~-~~~~v~~~~dl~~~l~------~~DvVI   77 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGA-GKTGVTVQSSLDAVKD------DFDVFI   77 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSS-SCCSCCEESCSTTTTT------SCSEEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCC-CcCCceecCCHHHHhc------CCCEEE
Confidence            5899999999999999999999899999999999743   37788888877 4678999999998884      789999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccC---CCCeEE
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH---YKNVEI  188 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~---~~dieI  188 (300)
                      |||+|+++.+++..|+++|+|+|+|||||++++.++|.+++++  ++++++||||+|+|+++++++.++++   .||+||
T Consensus        78 Dft~p~~~~~~~~~a~~~G~~vVigTtG~~~e~~~~L~~~a~~--~~vv~a~N~siGvn~~~~l~~~aa~~~~~~~diei  155 (273)
T 1dih_A           78 DFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD--IAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEI  155 (273)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTT--SCEEECSCCCHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             EcCChHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhcCC--CCEEEEecCcHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence            9999999999999999999999999999999999999999877  89999999999999999888777765   489999


Q ss_pred             EEccC-CCCCCCchHHHHHHHHHHhc-C------CccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCC
Q 022250          189 VESRP-NARDFPSPDATQIANNLSNL-G------QIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPG  260 (300)
Q Consensus       189 iE~Hh-~K~DaPSGTA~~l~~~i~~~-~------~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~  260 (300)
                      +|+|| +|+|||||||+++++.|++. +      ..++|++..+   .|.    +++|+|||+|+|+++|+|+|+|++++
T Consensus       156 iE~Hh~~K~DaPSGTA~~~ae~i~~~~~~~~~~~~~~~r~~~~~---~r~----~~~i~i~s~R~g~vvg~h~v~f~~~g  228 (273)
T 1dih_A          156 IEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTG---ERV----PGTIGFATVRAGDIVGEHTAMFADIG  228 (273)
T ss_dssp             EEEECTTCCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCCC---SCC----TTCEEEEEEECTTCCEEEEEEEEETT
T ss_pred             EEeecCCCCCCCCHHHHHHHHHHHHhhCCCccccccccccCccC---CCC----CCcceEEEEeCCCCCccEEEEEcCCC
Confidence            99999 69999999999999999763 2      2456666543   442    47899999999999999999999999


Q ss_pred             cEEEEEEEeCCccccHHHHHHHHHHhhccCCeeeeccccC
Q 022250          261 EVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL  300 (300)
Q Consensus       261 E~iel~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL  300 (300)
                      |+|||+|+|+||++||+||++||+||.+|++|+|+|+|||
T Consensus       229 e~i~i~H~a~~R~~fa~Ga~~Aa~~l~~~~~g~y~m~dvl  268 (273)
T 1dih_A          229 ERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVL  268 (273)
T ss_dssp             EEEEEEEEECSTHHHHHHHHHHHHHHTTCCSSEECHHHHT
T ss_pred             cEEEEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEcHHHhh
Confidence            9999999999999999999999999999999999999987

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=100.00  E-value=9.6e-70  Score=494.21  Aligned_cols=233  Identities=28%  Similarity=0.449  Sum_probs=207.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+|+||+|+||+.+++.+.+.++++|++++|+.                     +|+++++.     .++|||||||+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------------~dl~~~~~-----~~~DvvIDfT~   54 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------------DPLSLLTD-----GNTEVVIDFTH   54 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------------CCTHHHHH-----TTCCEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------------CCHHHHhc-----cCCcEEEEccC
Confidence            59999999999999999999888999999999853                     13456653     47899999999


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhC-CCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEccC-
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA-SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRP-  193 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~-~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~Hh-  193 (300)
                      |+++.+++..|+++|+|+|+|||||++++.++|+++|+++ ++|++++||||+|+|+|+++++.++++++|+||+|+|| 
T Consensus        55 p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~~aa~~~~dieIiE~HH~  134 (245)
T 1p9l_A           55 PDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHP  134 (245)
T ss_dssp             TTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHHHHGGGCSEEEEEEEECT
T ss_pred             hHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHHHHhhcCCEEEEECccc
Confidence            9999999999999999999999999999999999999976 89999999999999999999999999888999999999 


Q ss_pred             CCCCCCchHHHHHHHHHHhcCC------ccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCCcEEEEEE
Q 022250          194 NARDFPSPDATQIANNLSNLGQ------IYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKH  267 (300)
Q Consensus       194 ~K~DaPSGTA~~l~~~i~~~~~------~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~E~iel~H  267 (300)
                      +|+|||||||++|++.|++.+.      .+.|++..   +.|+..  .++|+|||+|+|+++|+|+|+|++++|+|||+|
T Consensus       135 ~K~DaPSGTA~~lae~i~~~~~~~~~~~~~~~~~~~---g~r~~~--~~~i~i~s~R~g~ivg~h~V~f~~~~e~i~i~H  209 (245)
T 1p9l_A          135 HKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLP---GARGAD--VDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRH  209 (245)
T ss_dssp             TCCSSSCHHHHHHHHHHHHHTTTSCCCCCCCCSCCT---TTTCEE--ETTEEEEEEECTTCCEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHhhccccccccccccccc---CCCCCC--CCcceEEEEECCCCCeEEEEEEcCCCcEEEEEE
Confidence            6999999999999999987432      23344433   345432  268999999999999999999999999999999


Q ss_pred             EeCCccccHHHHHHHHHHhhccCCe-eeeccccC
Q 022250          268 DITDVQSLMPGLILAIRKVVHLKNL-VYGLEKFL  300 (300)
Q Consensus       268 ~a~sR~~Fa~Gal~Aa~~l~~~~~g-~y~m~dvL  300 (300)
                      +|+||++||+||++||+||.+ ++| +|+|+|||
T Consensus       210 ~a~sR~~Fa~Ga~~Aa~~l~~-~~Gl~y~m~dvl  242 (245)
T 1p9l_A          210 DSLDRTSFVPGVLLAVRRIAE-RPGLTVGLEPLL  242 (245)
T ss_dssp             EECSGGGGHHHHHHHHHHGGG-SCEEEESSHHHH
T ss_pred             EeCchhhhHHHHHHHHHHHhc-CCCCEEcHHHhh
Confidence            999999999999999999995 568 69999986

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=100.00  E-value=4.6e-70  Score=487.45  Aligned_cols=210  Identities=23%  Similarity=0.311  Sum_probs=193.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -||.+|+||+|||||.+++.+ +.++++|++++|++.   +                ++    +      .++||+||||
T Consensus        12 ~~~~~v~Ga~GrMG~~i~~~~-~~~~~elv~~id~~~---~----------------~~----l------~~~DVvIDFT   61 (228)
T 1vm6_A           12 HMKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNG---V----------------EE----L------DSPDVVIDFS   61 (228)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTE---E----------------EE----C------SCCSEEEECS
T ss_pred             cceeEEEEecCHHHHHHHHHH-hCCCCEEEEEEcCCC---c----------------cc----c------cCCCEEEECC
Confidence            389999999999999998864 688999999998641   0                01    1      2589999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCC--CCeEEEEcc
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR  192 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~--~dieIiE~H  192 (300)
                      .|+++.+++++|+++|+|+|+|||||++++.+.|++++++  +|+++|||||+|||||+++++.+++++  ||+||+|+|
T Consensus        62 ~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vv~apNfSlGvnll~~l~~~aA~~l~~ydiEIiE~H  139 (228)
T 1vm6_A           62 SPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE--VPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIVETH  139 (228)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT--SEEEECSCCCHHHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHHhh--CCEEEeccccHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999999999999999999999999999999999999877  999999999999999999988888764  899999999


Q ss_pred             C-CCCCCCchHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCCcEEEEEEEeCC
Q 022250          193 P-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITD  271 (300)
Q Consensus       193 h-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~E~iel~H~a~s  271 (300)
                      | +|+|||||||++|++.|                        +++|+|||+|+|++||+|+|+|++++|+|||+|+|+|
T Consensus       140 H~~K~DAPSGTAl~lae~i------------------------~~~I~i~svR~g~ivg~H~V~F~~~gE~iei~H~a~s  195 (228)
T 1vm6_A          140 HRFKKDAPSGTAILLESAL------------------------GKSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAIS  195 (228)
T ss_dssp             CTTCCCSSCHHHHHHHHHT------------------------TSCCCEEEEECTTCCCEEEEEEECSSEEEEEEEEECC
T ss_pred             CCCCCCCCCHHHHHHHHhc------------------------ccCCCEEEEECCCCcEEEEEEEeCCCcEEEEEEEeCc
Confidence            9 69999999999999987                        1579999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHhhccCCeeeeccccC
Q 022250          272 VQSLMPGLILAIRKVVHLKNLVYGLEKFL  300 (300)
Q Consensus       272 R~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL  300 (300)
                      |++||+|||+||+||.+|++|+|+|+|||
T Consensus       196 R~~Fa~Gal~Aa~~l~~~~~G~Y~m~dvL  224 (228)
T 1vm6_A          196 RTVFAIGALKAAEFLVGKDPGMYSFEEVI  224 (228)
T ss_dssp             THHHHHHHHHHHHHHTTCCSEEECHHHHH
T ss_pred             HHHhHhHHHHHHHHHhcCCCCEecHHHHh
Confidence            99999999999999999999999999986

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=99.83  E-value=7.2e-22  Score=185.16  Aligned_cols=247  Identities=11%  Similarity=0.019  Sum_probs=164.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|+ |+||+.+++.+.+.++++|++++|++...    .+    . +++++++|+++++      .++|+||++|
T Consensus         3 ~irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~~~----~~----~-~gv~~~~d~~~ll------~~~DvViiat   66 (320)
T 1f06_A            3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL----DT----K-TPVFDVADVDKHA------DDVDVLFLCM   66 (320)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC----SS----S-SCEEEGGGGGGTT------TTCSEEEECS
T ss_pred             CCEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCHHH----hh----c-CCCceeCCHHHHh------cCCCEEEEcC
Confidence            689999998 99999999999988999999999976311    11    1 5677888998876      3799999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHH-HHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhcc-CC----CCeE
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETV-SALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF-HY----KNVE  187 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~-~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~-~~----~die  187 (300)
                      +|..+.+++..++++|+++|++|| +.+.++. ++|.+++++++.-.++..||+.|.+.+.++...... ..    +..+
T Consensus        67 p~~~h~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~~~~p~~~~l~~~l~~~~~~~g~~~~~~~~  146 (320)
T 1f06_A           67 GSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWDPGMFSINRVYAAAVLAEHQQHTFWGP  146 (320)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSBTTBHHHHHHHHHHHHCSSEEEEEEECS
T ss_pred             CcHHHHHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCEEEEecCChHHHHHHHHHHhhccccccceecccCC
Confidence            999999999999999999999998 5677777 899999998774555556999999888777654221 11    1235


Q ss_pred             EEEccC-CCCCCCchHHHHHH------HHHHh----cCCc-ccc--CccccccccccccccCCCeeEEEEEcCCCC----
Q 022250          188 IVESRP-NARDFPSPDATQIA------NNLSN----LGQI-YNR--EDISTDVKARGQVLGEDGVRVHSMVLPGLP----  249 (300)
Q Consensus       188 IiE~Hh-~K~DaPSGTA~~l~------~~i~~----~~~~-~~r--~~~~~~~~~rg~~~~~~~i~i~s~R~g~iv----  249 (300)
                      ..|.|| .+.++++|++-.++      +.+..    .... ..+  +........+|.++  .+|..++.|.++.+    
T Consensus       147 ~~~~~~~~~~~~~~gi~~a~g~~i~~e~~ld~v~~~~~p~~~~~d~~~~~~~~~~eG~d~--~~i~~~~~~~~~~~a~yd  224 (320)
T 1f06_A          147 GLSQGHSDALRRIPGVQKAVQYTLPSEDALEKARRGEAGDLTGKQTHKRQCFVVADAADH--ERIENDIRTMPDYFVGYE  224 (320)
T ss_dssp             EECHHHHHHHHTSTTCSEEEEEEEECHHHHHHHHHTCCTTCCHHHHEEEEEEEECCGGGH--HHHHHHHHTCTTTTTTSE
T ss_pred             CcccccccchhhcCchhhhhhcccCchHHHHHHhccCCCccchhhhhhceEEEEeCCcCh--HHHHHHHHhcccccCCCc
Confidence            678887 68888887532111      11111    1100 000  00000001112211  22333333333222    


Q ss_pred             --------------------eeEEEEE---ccCCcEEEEEEEeCC-ccccHHHHHHHHHH----hhccCCeeeecccc
Q 022250          250 --------------------SSTTVYF---SRPGEVYSIKHDITD-VQSLMPGLILAIRK----VVHLKNLVYGLEKF  299 (300)
Q Consensus       250 --------------------g~H~V~f---~~~~E~iel~H~a~s-R~~Fa~Gal~Aa~~----l~~~~~g~y~m~dv  299 (300)
                                          |.|.+..   +.+.++|+++.+..+ -..-|.=++.|+++    +..-+||+|+|-|+
T Consensus       225 ~~v~~~~~~~l~~~~~~~~~g~~v~~~~~~g~~~~~~~~~~~~~~~~~~ta~~~v~~~~~~~~~~~~~~~G~~t~~d~  302 (320)
T 1f06_A          225 VEVNFIDEATFDSEHTGMPHGGHVITTGDTGGFNHTVEYILKLDRNPDFTASSQIAFGRAAHRMKQQGQSGAFTVLEV  302 (320)
T ss_dssp             EEEEECCHHHHHHHSSCCCEEEEEEEEEESSSCEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCEEECGGGS
T ss_pred             eEEEEEchHHhhhhhcCCCCCcEEEEeecCCCCceeEEEEecCCCCcchhhHHHHHHHHHHHHHHhcCCCCCcccccC
Confidence                                4453333   334555888877753 33445567788888    88889999999986

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=99.72  E-value=3.2e-17  Score=153.93  Aligned_cols=147  Identities=17%  Similarity=0.103  Sum_probs=117.7

Q ss_pred             CCcceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCCccEE
Q 022250           33 QSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      |.||||||+|+ |+||+. ++..+.+.++++|++++|++.  ..+.+++   .++|++ +|+|++++++    +.++|+|
T Consensus        21 ~~mirigiIG~-G~ig~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a---~~~g~~~~y~d~~ell~----~~~iDaV   90 (350)
T 4had_A           21 QSMLRFGIIST-AKIGRDNVVPAIQDAENCVVTAIASRDL--TRAREMA---DRFSVPHAFGSYEEMLA----SDVIDAV   90 (350)
T ss_dssp             -CCEEEEEESC-CHHHHHTHHHHHHHCSSEEEEEEECSSH--HHHHHHH---HHHTCSEEESSHHHHHH----CSSCSEE
T ss_pred             cCccEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCeeeCCHHHHhc----CCCCCEE
Confidence            56899999998 999987 578888899999999999763  2334444   456775 7999999997    3689999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHHHhccCCCCeE
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVE  187 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~~~~~~~~die  187 (300)
                      +.+|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++++.+.+.-|+  +..+..++++.+.  +..-++.
T Consensus        91 ~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~--G~iG~i~  168 (350)
T 4had_A           91 YIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDE--GAIGSLR  168 (350)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHT--TTTSSEE
T ss_pred             EEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhc--CCCCcce
Confidence            9999999999999999999999999999 899999999999999999998888774  5555555555532  1233555


Q ss_pred             EEEc
Q 022250          188 IVES  191 (300)
Q Consensus       188 IiE~  191 (300)
                      -++.
T Consensus       169 ~i~~  172 (350)
T 4had_A          169 HVQG  172 (350)
T ss_dssp             EEEE
T ss_pred             eeeE
Confidence            5554

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=99.69  E-value=1.3e-16  Score=150.66  Aligned_cols=145  Identities=9%  Similarity=0.004  Sum_probs=113.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh-------cCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK-------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~-------~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~  106 (300)
                      ++||||+|+ |.||+.+++.+..       .++++|++++|++.  ..+..++   .+++++ +|+|++++++    +.+
T Consensus        25 kirvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a---~~~g~~~~y~d~~ell~----~~~   94 (393)
T 4fb5_A           25 PLGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANA--GLAEARA---GEFGFEKATADWRALIA----DPE   94 (393)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC----TTHHHHH---HHHTCSEEESCHHHHHH----CTT
T ss_pred             CccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCH--HHHHHHH---HHhCCCeecCCHHHHhc----CCC
Confidence            599999998 9999999987654       36889999999764  2333343   356764 7999999997    368


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHHHhccCC
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHY  183 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~~~~~~~  183 (300)
                      +|+|+.+|++..+.+.+..|+++||||+|++| +.+.+|.++|.++|+++++.+.+.-|+  +..+.-+.++.+.  +..
T Consensus        95 iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~--G~i  172 (393)
T 4fb5_A           95 VDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGD--GVI  172 (393)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHT--TTT
T ss_pred             CcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHc--CCC
Confidence            99999999999999999999999999999999 899999999999999999999988875  4444444555432  223


Q ss_pred             CCeEEEEc
Q 022250          184 KNVEIVES  191 (300)
Q Consensus       184 ~dieIiE~  191 (300)
                      -++..++.
T Consensus       173 G~i~~v~~  180 (393)
T 4fb5_A          173 GRVNHVRV  180 (393)
T ss_dssp             CSEEEEEE
T ss_pred             ccccceee
Confidence            45554543

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=99.69  E-value=2.4e-16  Score=149.20  Aligned_cols=148  Identities=16%  Similarity=0.081  Sum_probs=118.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      |++||+|+|+ |.||+.+++.+. ..++++|++++|++.  ..+..++   ..++  ++.|+|++++++    +.++|+|
T Consensus        22 ~~~rvgiIG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~ll~----~~~~D~V   91 (357)
T 3ec7_A           22 MTLKAGIVGI-GMIGSDHLRRLANTVSGVEVVAVCDIVA--GRAQAAL---DKYAIEAKDYNDYHDLIN----DKDVEVV   91 (357)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTCTTEEEEEEECSST--THHHHHH---HHHTCCCEEESSHHHHHH----CTTCCEE
T ss_pred             CeeeEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEeCCH--HHHHHHH---HHhCCCCeeeCCHHHHhc----CCCCCEE
Confidence            4689999998 999999999998 779999999999764  2233333   2345  678999999997    3579999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeE-EEcCC--CcHHHHHHHHHHHHhccCCCCe
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGC-LIAPT--LSIGSILLQQAAISASFHYKNV  186 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~i-v~a~N--~SiGv~ll~~~a~~~~~~~~di  186 (300)
                      +.+|++..+.+.+..|+++|+||++++| +.+.++.++|.++|+++++.+ .++.|  |...+..+.++.+.  ...-++
T Consensus        92 ~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i  169 (357)
T 3ec7_A           92 IITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDS--GEIGQP  169 (357)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHHHHHHHHHH--TTTCSE
T ss_pred             EEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHHHHHHHHHhc--CCCCCe
Confidence            9999999999999999999999999999 899999999999999999876 56655  66666666666543  223456


Q ss_pred             EEEEccC
Q 022250          187 EIVESRP  193 (300)
Q Consensus       187 eIiE~Hh  193 (300)
                      ..+...+
T Consensus       170 ~~v~~~~  176 (357)
T 3ec7_A          170 LMVHGRH  176 (357)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5555533

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=99.68  E-value=6.2e-16  Score=144.48  Aligned_cols=145  Identities=15%  Similarity=0.130  Sum_probs=117.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..++++ +|+|++++++    +.++|+|+.+
T Consensus         5 ~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~----~~~~D~V~i~   74 (329)
T 3evn_A            5 KVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTL--ESAQAFA---NKYHLPKAYDKLEDMLA----DESIDVIYVA   74 (329)
T ss_dssp             CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCS--STTCC------CCCCSCEESCHHHHHT----CTTCCEEEEC
T ss_pred             ceEEEEEec-hHHHHHHHHHHHhCCCcEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhc----CCCCCEEEEC
Confidence            589999998 999999999999889999999999754  2222333   456776 8999999996    3579999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHHHhccCCCCeEEEE
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIVE  190 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~~~~~~~~dieIiE  190 (300)
                      |++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++++.++.+.|+  ...+..+.++.+.  ...-++..++
T Consensus        75 tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~v~  152 (329)
T 3evn_A           75 TINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLAS--GEIGEVISIS  152 (329)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHHT--TTTCSEEEEE
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHhC--CCCCCeEEEE
Confidence            9999999999999999999999999 899999999999999999999988875  6776666666542  1233454444


Q ss_pred             c
Q 022250          191 S  191 (300)
Q Consensus       191 ~  191 (300)
                      .
T Consensus       153 ~  153 (329)
T 3evn_A          153 S  153 (329)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=99.68  E-value=1.4e-16  Score=150.41  Aligned_cols=146  Identities=11%  Similarity=-0.004  Sum_probs=118.6

Q ss_pred             CcceEEEEcCCchHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .++||+|+|+ |+||+ .+++.+.+.++++|++++|++.  ..+..++   ..+|++.++|++++++    +.++|+|+.
T Consensus        26 ~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~~ll~----~~~~D~V~i   95 (350)
T 3rc1_A           26 NPIRVGVIGC-ADIAWRRALPALEAEPLTEVTAIASRRW--DRAKRFT---ERFGGEPVEGYPALLE----RDDVDAVYV   95 (350)
T ss_dssp             CCEEEEEESC-CHHHHHTHHHHHHHCTTEEEEEEEESSH--HHHHHHH---HHHCSEEEESHHHHHT----CTTCSEEEE
T ss_pred             CceEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEEEcCCH--HHHHHHH---HHcCCCCcCCHHHHhc----CCCCCEEEE
Confidence            3699999998 99999 7999999899999999999753  2233333   3568888999999996    357999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieIi  189 (300)
                      +|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++++.+.++.|  |...+..++++.+.  +..-++..+
T Consensus        96 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~i~~v  173 (350)
T 3rc1_A           96 PLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDE--GVIGEIRSF  173 (350)
T ss_dssp             CCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHT--TTTCSEEEE
T ss_pred             CCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhc--CCCCCeEEE
Confidence            99999999999999999999999999 89999999999999999998887775  46666666666542  123355555


Q ss_pred             Ec
Q 022250          190 ES  191 (300)
Q Consensus       190 E~  191 (300)
                      +.
T Consensus       174 ~~  175 (350)
T 3rc1_A          174 AA  175 (350)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=99.68  E-value=3.9e-16  Score=145.71  Aligned_cols=146  Identities=14%  Similarity=0.137  Sum_probs=118.2

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ||+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..++++ |+|++++++    +.++|+|+.+
T Consensus         2 m~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~-~~~~~~~l~----~~~~D~V~i~   70 (331)
T 4hkt_A            2 MTVRFGLLGA-GRIGKVHAKAVSGNADARLVAVADAFP--AAAEAIA---GAYGCE-VRTIDAIEA----AADIDAVVIC   70 (331)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HHTTCE-ECCHHHHHH----CTTCCEEEEC
T ss_pred             CceEEEEECC-CHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHHHH---HHhCCC-cCCHHHHhc----CCCCCEEEEe
Confidence            6899999998 999999999999889999999999753  2233333   356788 999999997    3589999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEEEE
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE  190 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieIiE  190 (300)
                      |++..+.+.+..|+++|+||++++| +.+.++.++|.++++++++.+++..|  |...+..+.++.+.  ...-++..++
T Consensus        71 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~~  148 (331)
T 4hkt_A           71 TPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDD--GRIGEVEMVT  148 (331)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHT--TTTCSEEEEE
T ss_pred             CCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHc--CCCCceEEEE
Confidence            9999999999999999999999999 89999999999999999999888777  45555555555542  2234555555


Q ss_pred             cc
Q 022250          191 SR  192 (300)
Q Consensus       191 ~H  192 (300)
                      .+
T Consensus       149 ~~  150 (331)
T 4hkt_A          149 IT  150 (331)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=99.68  E-value=4.4e-16  Score=146.73  Aligned_cols=148  Identities=20%  Similarity=0.164  Sum_probs=120.1

Q ss_pred             CcceEEEEcCCchHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ||+||+|+|+ |+||+ .++..+.+.++++|++++|++ ..+...+..+   ..++++|+|++++++    +.++|+|+.
T Consensus         1 M~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~---~~~~~~~~~~~~ll~----~~~~D~V~i   71 (349)
T 3i23_A            1 MTVKMGFIGF-GKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFK---EKGVNFTADLNELLT----DPEIELITI   71 (349)
T ss_dssp             CCEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHH---TTTCEEESCTHHHHS----CTTCCEEEE
T ss_pred             CeeEEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhC---CCCCeEECCHHHHhc----CCCCCEEEE
Confidence            6899999998 99999 799989888999999999976 2333322221   146789999999997    357999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieIi  189 (300)
                      +|++..+.+.+..|+++||||+|++| ..+.++.++|.++|+++++.+.++.|  |.....-+.++.+.  ...-++.-+
T Consensus        72 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~  149 (349)
T 3i23_A           72 CTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVEQ--GFLGEINEV  149 (349)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHH--TTTCSEEEE
T ss_pred             eCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhc--CCCCCEEEE
Confidence            99999999999999999999999999 89999999999999999999998888  56666556665543  223456666


Q ss_pred             Ecc
Q 022250          190 ESR  192 (300)
Q Consensus       190 E~H  192 (300)
                      +.+
T Consensus       150 ~~~  152 (349)
T 3i23_A          150 ETH  152 (349)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=99.68  E-value=3.6e-16  Score=146.68  Aligned_cols=125  Identities=14%  Similarity=0.146  Sum_probs=108.5

Q ss_pred             cceEEEEcCCchHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhccccc-CCccEEEE
Q 022250           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS-KARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~-~~~DVVID  112 (300)
                      ++||+|+|+ |+||+ .+++.+.+.++++|++++|++.            ...+++.|+|++++++    + .++|+|+.
T Consensus        25 ~~rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~------------~~~g~~~~~~~~~ll~----~~~~vD~V~i   87 (330)
T 4ew6_A           25 PINLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHG------------TVEGVNSYTTIEAMLD----AEPSIDAVSL   87 (330)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSC------------CCTTSEEESSHHHHHH----HCTTCCEEEE
T ss_pred             CceEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCCh------------hhcCCCccCCHHHHHh----CCCCCCEEEE
Confidence            599999998 99999 7999999999999999999763            2457889999999997    3 47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc--HHHHHHHHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAA  176 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S--iGv~ll~~~a  176 (300)
                      +|++..+.+.+..|+++||||+++|| +.+.++.++|.++|+++++.+.++.|+-  ..+..+.+++
T Consensus        88 ~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i  154 (330)
T 4ew6_A           88 CMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASWHSRYAPAVEAAKAFL  154 (330)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSTTHHHHHHHH
T ss_pred             eCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEehhhccHHHHHHHHHH
Confidence            99999999999999999999999999 7999999999999999999988887754  3444444444

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=99.68  E-value=1e-15  Score=144.23  Aligned_cols=147  Identities=22%  Similarity=0.224  Sum_probs=118.9

Q ss_pred             CCCcceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250           32 PQSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      |++++||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..     ...++++|+|++++++    +.++|+|
T Consensus         4 M~~~~rvgiiG~-G~~g~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~~ll~----~~~vD~V   71 (352)
T 3kux_A            4 MADKIKVGLLGY-GYASKTFHAPLIMGTPGLELAGVSSSDA--SKVHA-----DWPAIPVVSDPQMLFN----DPSIDLI   71 (352)
T ss_dssp             TTCCEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHT-----TCSSCCEESCHHHHHH----CSSCCEE
T ss_pred             ccCCceEEEECC-CHHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHh-----hCCCCceECCHHHHhc----CCCCCEE
Confidence            444699999998 999997 999999899999999999753  11111     2346788999999997    3679999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeE
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVE  187 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~die  187 (300)
                      +.+|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++++.+.+..|  |+..+.-+.++.+.  ...-++.
T Consensus        72 ~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~  149 (352)
T 3kux_A           72 VIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAE--GSLGNVV  149 (352)
T ss_dssp             EECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHH--TTTCSEE
T ss_pred             EEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHHhc--CCCCceE
Confidence            9999999999999999999999999999 89999999999999999999888877  46666666666543  2234555


Q ss_pred             EEEcc
Q 022250          188 IVESR  192 (300)
Q Consensus       188 IiE~H  192 (300)
                      -++.+
T Consensus       150 ~~~~~  154 (352)
T 3kux_A          150 YFESH  154 (352)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=99.66  E-value=1.1e-15  Score=144.86  Aligned_cols=143  Identities=13%  Similarity=0.079  Sum_probs=117.8

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCC-CcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+.      ..+ ++++|+|++++++    +.++|+|+.
T Consensus         5 ~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~------~~~~~~~~~~~~~~ll~----~~~vD~V~i   71 (362)
T 3fhl_A            5 IIKTGLAAF-GMSGQVFHAPFISTNPHFELYKIVERSK--ELSK------ERYPQASIVRSFKELTE----DPEIDLIVV   71 (362)
T ss_dssp             CEEEEESCC-SHHHHHTTHHHHHHCTTEEEEEEECSSC--CGGG------TTCTTSEEESCSHHHHT----CTTCCEEEE
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHH------HhCCCCceECCHHHHhc----CCCCCEEEE
Confidence            599999998 999997 899998899999999999764  1221      234 6789999999997    357999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieIi  189 (300)
                      +|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++++.+.+..|  |+..+..+.++.+.  ...-++.-+
T Consensus        72 ~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~i~~v  149 (362)
T 3fhl_A           72 NTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDILAK--SLLGRLVEY  149 (362)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHT--TTTSSEEEE
T ss_pred             eCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHHc--CCCCCeEEE
Confidence            99999999999999999999999999 89999999999999999999998888  56666666666543  123355555


Q ss_pred             Ecc
Q 022250          190 ESR  192 (300)
Q Consensus       190 E~H  192 (300)
                      +.+
T Consensus       150 ~~~  152 (362)
T 3fhl_A          150 EST  152 (362)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=99.66  E-value=1.4e-15  Score=144.00  Aligned_cols=145  Identities=16%  Similarity=0.174  Sum_probs=118.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|+ |.||+.+++.+.+.++++|++++|++.  ..+ +.+   ..+|+++|+|++++++    +.++|+|+.+|
T Consensus         5 ~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~-~~a---~~~g~~~~~~~~~ll~----~~~~D~V~i~t   73 (359)
T 3e18_A            5 KYQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDILA--EKR-EAA---AQKGLKIYESYEAVLA----DEKVDAVLIAT   73 (359)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSH--HHH-HHH---HTTTCCBCSCHHHHHH----CTTCCEEEECS
T ss_pred             cCcEEEECc-CHHHHHHHHHHHhCCCcEEEEEEcCCH--HHH-HHH---HhcCCceeCCHHHHhc----CCCCCEEEEcC
Confidence            589999998 999999999999999999999999753  112 222   3578889999999997    36899999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEEEEc
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVES  191 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieIiE~  191 (300)
                      ++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++++.+.+..|  |...+..++++.+.  ...-++..++.
T Consensus        74 p~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~~~~  151 (359)
T 3e18_A           74 PNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQ--KTIGEMFHLES  151 (359)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHH--TTTSSEEEEEE
T ss_pred             CcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHc--CCCCCeEEEEE
Confidence            999999999999999999999999 89999999999999999998888777  45555555555543  22345555555


Q ss_pred             c
Q 022250          192 R  192 (300)
Q Consensus       192 H  192 (300)
                      +
T Consensus       152 ~  152 (359)
T 3e18_A          152 R  152 (359)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=99.66  E-value=5.5e-16  Score=143.87  Aligned_cols=141  Identities=18%  Similarity=0.184  Sum_probs=111.5

Q ss_pred             eecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC
Q 022250           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      |+.||.++++||+|+|+ |+||+.+++.+.+.+++++++++|++.  ..+..+.   ..  +++++|++++++    +.+
T Consensus         2 m~~p~~~~~~~igiIG~-G~~g~~~~~~l~~~~~~~~v~v~d~~~--~~~~~~~---~~--~~~~~~~~~~l~----~~~   69 (315)
T 3c1a_A            2 MSIPANNSPVRLALIGA-GRWGKNYIRTIAGLPGAALVRLASSNP--DNLALVP---PG--CVIESDWRSVVS----APE   69 (315)
T ss_dssp             -------CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEEEEEESCH--HHHTTCC---TT--CEEESSTHHHHT----CTT
T ss_pred             CCCCCCCCcceEEEECC-cHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH---hh--CcccCCHHHHhh----CCC
Confidence            66677677899999998 999999999999889999999999753  1222222   12  678899999985    257


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHh
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISA  179 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~  179 (300)
                      +|+|+.+|++..+.+.+..|+++|+||++++| ..+.++.++|.++++++++.++.+.|  |+..+..+.++.+.+
T Consensus        70 ~D~V~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~l  145 (315)
T 3c1a_A           70 VEAVIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLFNPAWEALKADLTSI  145 (315)
T ss_dssp             CCEEEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGGCHHHHHHHHTHHHH
T ss_pred             CCEEEEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhcCHHHHHHHHHHHHc
Confidence            99999999999999999999999999999998 78899999999999999998888765  566776677666533

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=99.66  E-value=4.1e-16  Score=146.98  Aligned_cols=146  Identities=11%  Similarity=0.079  Sum_probs=117.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      +++||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..++++.|+|++++++    +.++|+|+.+
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~lvav~d~~~--~~~~~~~---~~~g~~~~~~~~~~l~----~~~~D~V~i~   73 (354)
T 3db2_A            4 NPVGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTE--DKREKFG---KRYNCAGDATMEALLA----REDVEMVIIT   73 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSH--HHHHHHH---HHHTCCCCSSHHHHHH----CSSCCEEEEC
T ss_pred             CcceEEEEcc-CHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHcCCCCcCCHHHHhc----CCCCCEEEEe
Confidence            4689999998 999999999999889999999999753  2233333   3457788999999996    3679999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHHHhccCCCCeEEEE
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIVE  190 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~~~~~~~~dieIiE  190 (300)
                      |++..+.+.+..|+++|+||++++| +.+.++.++|.++++++++.+.++.|+  +..+..+.++.+.  +..-++.-++
T Consensus        74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~v~  151 (354)
T 3db2_A           74 VPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDT--KEIGEVSSIE  151 (354)
T ss_dssp             SCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHT--TTTCCEEEEE
T ss_pred             CChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhc--CCCCCeEEEE
Confidence            9999999999999999999999999 899999999999999999988887765  4444445555432  2233555444


Q ss_pred             c
Q 022250          191 S  191 (300)
Q Consensus       191 ~  191 (300)
                      .
T Consensus       152 ~  152 (354)
T 3db2_A          152 A  152 (354)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=99.66  E-value=9.6e-16  Score=143.92  Aligned_cols=148  Identities=14%  Similarity=0.111  Sum_probs=117.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      ||+||+|+|+ |.||+.+++.+. ..++++|++++|++.  ..+..++   ..++  +++|+|++++++    +.++|+|
T Consensus         1 M~~rigiIG~-G~~g~~~~~~l~~~~~~~~l~av~d~~~--~~~~~~~---~~~g~~~~~~~~~~~ll~----~~~~D~V   70 (344)
T 3mz0_A            1 MSLRIGVIGT-GAIGKEHINRITNKLSGAEIVAVTDVNQ--EAAQKVV---EQYQLNATVYPNDDSLLA----DENVDAV   70 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTCSSEEEEEEECSSH--HHHHHHH---HHTTCCCEEESSHHHHHH----CTTCCEE
T ss_pred             CeEEEEEECc-cHHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHH---HHhCCCCeeeCCHHHHhc----CCCCCEE
Confidence            6799999998 999999999998 779999999999753  2223333   3455  678999999997    3579999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeE-EEcCC--CcHHHHHHHHHHHHhccCCCCe
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGC-LIAPT--LSIGSILLQQAAISASFHYKNV  186 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~i-v~a~N--~SiGv~ll~~~a~~~~~~~~di  186 (300)
                      +.+|++..+.+.+..|+++|+||++++| +.+.++.++|.++|+++++.+ .++.|  |...+..+.++.+.  ...-++
T Consensus        71 ~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i  148 (344)
T 3mz0_A           71 LVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDN--HVIGEP  148 (344)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHHT--TTTSSE
T ss_pred             EECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHHc--CCCCCc
Confidence            9999999999999999999999999999 899999999999999999877 56555  55565555555543  223456


Q ss_pred             EEEEccC
Q 022250          187 EIVESRP  193 (300)
Q Consensus       187 eIiE~Hh  193 (300)
                      ..++..+
T Consensus       149 ~~v~~~~  155 (344)
T 3mz0_A          149 LMIHCAH  155 (344)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            6565543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=99.66  E-value=1e-15  Score=143.11  Aligned_cols=147  Identities=10%  Similarity=-0.011  Sum_probs=117.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCCccEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      ||+||+|+|+ |+||+.+++.+.+.+  +++|++++|++.  ..+..++   ..+++ .+|+|++++++    +.++|+|
T Consensus         1 M~~rigiiG~-G~ig~~~~~~l~~~~~~~~~l~av~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~----~~~vD~V   70 (334)
T 3ohs_X            1 MALRWGIVSV-GLISSDFTAVLQTLPRSEHQVVAVAARDL--SRAKEFA---QKHDIPKAYGSYEELAK----DPNVEVA   70 (334)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHTTSCTTTEEEEEEECSSH--HHHHHHH---HHHTCSCEESSHHHHHH----CTTCCEE
T ss_pred             CccEEEEECc-hHHHHHHHHHHHhCCCCCeEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhc----CCCCCEE
Confidence            6799999998 999999999998776  479999999753  2233333   34566 47999999997    3689999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeE
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVE  187 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~die  187 (300)
                      +.+|++..+.+.+..|+++|+||+|++| ..+.++.++|.++|+++++.+..+.|  |...+..+.++.+.  +..-++.
T Consensus        71 ~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~  148 (334)
T 3ohs_X           71 YVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLAQ--GTLGDLR  148 (334)
T ss_dssp             EECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHH--TTTCSEE
T ss_pred             EECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcCHHHHHHHHHHhc--CCCCCeE
Confidence            9999999999999999999999999999 89999999999999999999888776  45565556665543  2234666


Q ss_pred             EEEcc
Q 022250          188 IVESR  192 (300)
Q Consensus       188 IiE~H  192 (300)
                      .++.+
T Consensus       149 ~v~~~  153 (334)
T 3ohs_X          149 VARAE  153 (334)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66654

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=99.65  E-value=1.3e-15  Score=142.41  Aligned_cols=145  Identities=14%  Similarity=0.091  Sum_probs=117.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..+++ .+|+|++++++    +.++|+|+.+
T Consensus         5 ~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~----~~~~D~V~i~   74 (330)
T 3e9m_A            5 KIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRL--ENAQKMA---KELAIPVAYGSYEELCK----DETIDIIYIP   74 (330)
T ss_dssp             CEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSS--HHHHHHH---HHTTCCCCBSSHHHHHH----CTTCSEEEEC
T ss_pred             eEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH---HHcCCCceeCCHHHHhc----CCCCCEEEEc
Confidence            689999998 999999999999889999999999764  2333333   34677 47999999997    3689999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEEEE
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE  190 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieIiE  190 (300)
                      |++..+.+.+..|+++|+||++++| +.+.++.++|.++++++++.+..+.|  |...+..+.++.+.  ...-++..++
T Consensus        75 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~i~  152 (330)
T 3e9m_A           75 TYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQE--GGLGEILWVQ  152 (330)
T ss_dssp             CCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHT--TTTCSEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhC--CCCCCeEEEE
Confidence            9999999999999999999999999 89999999999999999999888887  45555555665542  1233454444


Q ss_pred             c
Q 022250          191 S  191 (300)
Q Consensus       191 ~  191 (300)
                      .
T Consensus       153 ~  153 (330)
T 3e9m_A          153 S  153 (330)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=99.65  E-value=9e-16  Score=143.99  Aligned_cols=148  Identities=13%  Similarity=0.128  Sum_probs=119.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      +|+||+|+|+ |.||+.+++.+.+.++++|++++|++.  ..+..++   ..+++++|+|++++++    +.++|+|+.+
T Consensus         3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~~~l~----~~~~D~V~i~   72 (344)
T 3euw_A            3 LTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFI--EGAQRLA---EANGAEAVASPDEVFA----RDDIDGIVIG   72 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HTTTCEEESSHHHHTT----CSCCCEEEEC
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHcCCceeCCHHHHhc----CCCCCEEEEe
Confidence            4699999998 999999999999899999999999753  2233333   3567889999999996    3589999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc--HHHHHHHHHHHHhccCCCCeEEEE
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHYKNVEIVE  190 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S--iGv~ll~~~a~~~~~~~~dieIiE  190 (300)
                      |++..+.+.+..|+++|++|++++| +.+.++.++|.++++++++.+.+..|+-  ..+..+.++.+.  ...-++..++
T Consensus        73 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~v~  150 (344)
T 3euw_A           73 SPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVAN--QEIGNLEQLV  150 (344)
T ss_dssp             SCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHT--TTTSSEEEEE
T ss_pred             CCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhc--CCCCceEEEE
Confidence            9999999999999999999999999 8999999999999999999888877653  444444555432  2234566566


Q ss_pred             ccC
Q 022250          191 SRP  193 (300)
Q Consensus       191 ~Hh  193 (300)
                      .+.
T Consensus       151 ~~~  153 (344)
T 3euw_A          151 IIS  153 (344)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=99.65  E-value=1.2e-15  Score=143.89  Aligned_cols=146  Identities=16%  Similarity=0.140  Sum_probs=118.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      +|+||+|+|+ |.||+.+++.+.+. ++++|++++|++.  ..+..++   ..++++.|+|++++++    +.++|+|+.
T Consensus        12 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~----~~~~D~V~i   81 (354)
T 3q2i_A           12 RKIRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDP--AALKAAV---ERTGARGHASLTDMLA----QTDADIVIL   81 (354)
T ss_dssp             SCEEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHHCCEEESCHHHHHH----HCCCSEEEE
T ss_pred             CcceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCH--HHHHHHH---HHcCCceeCCHHHHhc----CCCCCEEEE
Confidence            4699999998 99999999999888 8999999999753  2223333   3457889999999996    358999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieIi  189 (300)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++++.++++.|  |+..+..+.++.+.  ...-++..+
T Consensus        82 ~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~v  159 (354)
T 3q2i_A           82 TTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQE--KRFGRIYMV  159 (354)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHT--TTTCSEEEE
T ss_pred             CCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHhc--CCCCceEEE
Confidence            99999999999999999999999999 89999999999999999999988877  66665555555542  223355544


Q ss_pred             Ec
Q 022250          190 ES  191 (300)
Q Consensus       190 E~  191 (300)
                      +.
T Consensus       160 ~~  161 (354)
T 3q2i_A          160 NV  161 (354)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=99.65  E-value=1.9e-15  Score=142.01  Aligned_cols=147  Identities=18%  Similarity=0.123  Sum_probs=116.2

Q ss_pred             CcceEEEEcCCchHHHH-HHH-HHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           34 SNIKVIINGAVKEIGRA-AVI-AVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~-~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ||+||+|+|+ |+||+. ++. .+...++++|++++|++..  .+....   ...++++|+|++++++    +.++|+|+
T Consensus         1 m~~rvgiiG~-G~~g~~~~~~~~~~~~~~~~l~av~d~~~~--~~~~~~---~~~~~~~~~~~~~ll~----~~~~D~V~   70 (345)
T 3f4l_A            1 MVINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAK--PEEQAP---IYSHIHFTSDLDEVLN----DPDVKLVV   70 (345)
T ss_dssp             -CEEEEEECC-SHHHHHHTHHHHTTCTTTEEEEEEECSSCC--GGGGSG---GGTTCEEESCTHHHHT----CTTEEEEE
T ss_pred             CceEEEEEec-CHHHHHHHHHHHHhcCCCeEEEEEEcCCHh--HHHHHH---hcCCCceECCHHHHhc----CCCCCEEE
Confidence            6799999998 999995 888 5577899999999997541  111111   2346789999999997    35799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEE
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI  188 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieI  188 (300)
                      .+|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++++.+.+..|  |.....-+.++.+.  ...-++.-
T Consensus        71 i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~  148 (345)
T 3f4l_A           71 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE  148 (345)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHH--STTCSEEE
T ss_pred             EcCChHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEechhcCHHHHHHHHHHhc--CCCCCeEE
Confidence            999999999999999999999999999 89999999999999999999988887  45666566666543  22345555


Q ss_pred             EEcc
Q 022250          189 VESR  192 (300)
Q Consensus       189 iE~H  192 (300)
                      ++.+
T Consensus       149 ~~~~  152 (345)
T 3f4l_A          149 VESH  152 (345)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=99.64  E-value=7e-16  Score=144.88  Aligned_cols=147  Identities=11%  Similarity=0.063  Sum_probs=117.1

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ||+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..++++ +|+|++++++    +.++|+|+.
T Consensus         1 M~~rvgiIG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~----~~~~D~V~i   70 (344)
T 3ezy_A            1 MSLRIGVIGL-GRIGTIHAENLKMIDDAILYAISDVRE--DRLREMK---EKLGVEKAYKDPHELIE----DPNVDAVLV   70 (344)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHGGGSTTEEEEEEECSCH--HHHHHHH---HHHTCSEEESSHHHHHH----CTTCCEEEE
T ss_pred             CeeEEEEEcC-CHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHhCCCceeCCHHHHhc----CCCCCEEEE
Confidence            6799999998 999999999998889999999999753  2222333   245664 7999999997    358999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHHHhccCCCCeEEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIV  189 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~~~~~~~~dieIi  189 (300)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++++.+.++.|+  ...+..+.++.+.  ...-++..+
T Consensus        71 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~iG~i~~~  148 (344)
T 3ezy_A           71 CSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVEN--GTIGKPHVL  148 (344)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHT--TTTSSEEEE
T ss_pred             cCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHHc--CCCCCeEEE
Confidence            99999999999999999999999999 899999999999999999988887775  4444445555432  233466666


Q ss_pred             Ecc
Q 022250          190 ESR  192 (300)
Q Consensus       190 E~H  192 (300)
                      +.+
T Consensus       149 ~~~  151 (344)
T 3ezy_A          149 RIT  151 (344)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=99.64  E-value=1.1e-15  Score=141.45  Aligned_cols=119  Identities=16%  Similarity=0.193  Sum_probs=102.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .+||+|+|++|+||+.+++.+.+. ++++++.+++...|.         ...|+++|+|++++.++    .++|++|+|+
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~~g~---------~i~G~~vy~sl~el~~~----~~~Dv~Ii~v   72 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGM---------EVLGVPVYDTVKEAVAH----HEVDASIIFV   72 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC---------EETTEEEESSHHHHHHH----SCCSEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCCCCc---------eECCEEeeCCHHHHhhc----CCCCEEEEec
Confidence            489999999999999999998865 899888888754221         13589999999999752    3799999999


Q ss_pred             CchhHHHHHHHHHHcCCC-EEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          115 DASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~-vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      +|+.+.+.++.|+++|++ +|+.|+|++.++.++|.++++++++. +++|| ++|+
T Consensus        73 p~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~-vigPN-c~Gi  126 (288)
T 1oi7_A           73 PAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSR-LIGGN-CPGI  126 (288)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EEESS-SCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEeCC-CCeE
Confidence            999999999999999999 78889999998889999999998875 78899 7775

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=99.64  E-value=7.6e-16  Score=147.18  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=118.4

Q ss_pred             CcceEEEEcCCc-hHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVK-EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~G-rMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |++||+|+|+ | .||+.+++.+.+.++++|++++|++.  ..+..++   ..+++++|+|++++++    +.++|+|+.
T Consensus         1 ~~~rigiiG~-G~~~~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~ell~----~~~vD~V~i   70 (387)
T 3moi_A            1 MKIRFGICGL-GFAGSVLMAPAMRHHPDAQIVAACDPNE--DVRERFG---KEYGIPVFATLAEMMQ----HVQMDAVYI   70 (387)
T ss_dssp             CCEEEEEECC-SHHHHTTHHHHHHHCTTEEEEEEECSCH--HHHHHHH---HHHTCCEESSHHHHHH----HSCCSEEEE
T ss_pred             CceEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEEEeCCH--HHHHHHH---HHcCCCeECCHHHHHc----CCCCCEEEE
Confidence            5799999998 8 99999999999999999999999753  2223333   3568889999999997    357999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc--HHHHHHHHHHHHhccCCCCeEEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHYKNVEIV  189 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S--iGv~ll~~~a~~~~~~~~dieIi  189 (300)
                      +|++..+.+++..|+++||||++++| ..+.++.++|.++|+++++.+.++.|+-  ..+.-+.++.+.  ...-++..+
T Consensus        71 ~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~  148 (387)
T 3moi_A           71 ASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAIVQE--GSVGRVSML  148 (387)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHH--CTTCCEEEE
T ss_pred             cCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHhc--CCCCCeEEE
Confidence            99999999999999999999999999 8999999999999999999988888754  444444555432  223455555


Q ss_pred             Ec
Q 022250          190 ES  191 (300)
Q Consensus       190 E~  191 (300)
                      +.
T Consensus       149 ~~  150 (387)
T 3moi_A          149 NC  150 (387)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=4.2e-15  Score=141.01  Aligned_cols=144  Identities=14%  Similarity=0.136  Sum_probs=117.7

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..     ...++++|+|++++++    +.++|+|+.+
T Consensus         7 ~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~~ll~----~~~~D~V~i~   74 (364)
T 3e82_A            7 TINIALIGY-GFVGKTFHAPLIRSVPGLNLAFVASRDE--EKVKR-----DLPDVTVIASPEAAVQ----HPDVDLVVIA   74 (364)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHH-----HCTTSEEESCHHHHHT----CTTCSEEEEC
T ss_pred             cceEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHh-----hCCCCcEECCHHHHhc----CCCCCEEEEe
Confidence            699999998 999996 899998899999999999753  12221     1236788999999997    3689999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeEEEE
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE  190 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~dieIiE  190 (300)
                      |++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++++.+.+..|  |+..+..+.++.+.  ...-++.-++
T Consensus        75 tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~~  152 (364)
T 3e82_A           75 SPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIEQ--GTLGAVKHFE  152 (364)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--TTTCSEEEEE
T ss_pred             CChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHHHc--CCCcceEEEE
Confidence            9999999999999999999999999 89999999999999999999988887  56776666666543  2234555555


Q ss_pred             cc
Q 022250          191 SR  192 (300)
Q Consensus       191 ~H  192 (300)
                      .+
T Consensus       153 ~~  154 (364)
T 3e82_A          153 SH  154 (364)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.64  E-value=1e-14  Score=130.35  Aligned_cols=216  Identities=15%  Similarity=0.125  Sum_probs=146.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+|+|+ |+||+.+++.+. .++++|++++|++.   .+       ..    .++|++++++     .++|+|+++++
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~-~~g~~lv~v~d~~~---~~-------~~----~~~~~~~l~~-----~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLE-RNGFEIAAILDVRG---EH-------EK----MVRGIDEFLQ-----REMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEEECSSC---CC-------TT----EESSHHHHTT-----SCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHh-cCCCEEEEEEecCc---ch-------hh----hcCCHHHHhc-----CCCCEEEECCC
Confidence            58999998 999999999988 68999999999753   11       11    6789999884     47999999999


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCCC-CHHHH-HHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEccC
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPHI-QLETV-SALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRP  193 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG~-~~e~~-~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~Hh  193 (300)
                      ++.+.+++..++++|+++|+++|+. +.++. ++|.++++++++.+++.+|++.|++.+....  +  ....+.+.+.++
T Consensus        60 ~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~--~--~~~~~~~~~~~~  135 (236)
T 2dc1_A           60 QQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSAS--E--LIEEIVLTTRKN  135 (236)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTG--G--GEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhh--c--cccEEEEEEEcC
Confidence            9999999999999999999999965 33444 7899999999999999999999986654221  2  233455555566


Q ss_pred             -CCCCCC----chHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCeeEEEEEccCCcEEEEEEE
Q 022250          194 -NARDFP----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHD  268 (300)
Q Consensus       194 -~K~DaP----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg~H~V~f~~~~E~iel~H~  268 (300)
                       .+.+.|    +|++...++.+   +...+--  ........   +...+.+.+- ... .-.|.+...|+...++++-+
T Consensus       136 ~~~~~~~~~~~~G~~~~~~~~~---~~~~n~~--~~~~~a~~---~~~~~~l~~~-~~~-~~~~~i~v~G~~g~~~~~~~  205 (236)
T 2dc1_A          136 WRQFGRKGVIFEGSASEAAQKF---PKNLNVA--ATLSIASG---KDVKVRLVAD-EVE-ENIHEILVRGEFGEMEIRVR  205 (236)
T ss_dssp             GGGTTSCEEEEEEEHHHHHHHS---TTCCHHH--HHHHHHHS---SCCEEEEEEE-SCS-SEEEEEEEEETTEEEEEEEE
T ss_pred             hHHcCcceEEEeccHHHHHHHC---CchHHHH--HHHHHhcc---CceEEEEEEc-CCC-CcEEEEEEEecCeEEEEEEe
Confidence             677777    67764333221   1000000  00000000   1134455555 433 45899999999998888654


Q ss_pred             eCC-----ccccHHHHHHHHHHhh
Q 022250          269 ITD-----VQSLMPGLILAIRKVV  287 (300)
Q Consensus       269 a~s-----R~~Fa~Gal~Aa~~l~  287 (300)
                      -..     +++ ...++.+++-|.
T Consensus       206 ~~p~~~~~~t~-~~~~~s~~~~~~  228 (236)
T 2dc1_A          206 NRPMRENPKTS-YLAALSVTRILR  228 (236)
T ss_dssp             ECEETTEEEEE-HHHHHHHHHHHH
T ss_pred             CCcCCCCCcch-HHHHHHHHHHHH
Confidence            332     233 445555555443

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=99.63  E-value=1.9e-15  Score=140.48  Aligned_cols=119  Identities=20%  Similarity=0.310  Sum_probs=101.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC-ccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA-RAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~-~DVVIDf  113 (300)
                      +.||+|+|++|+||+.+++.+.+. ++++++.+++...|+.         ..|+++|+|++++.++    .+ +|++|+|
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~-g~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~~DvaIi~   78 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKGGSE---------VHGVPVYDSVKEALAE----HPEINTSIVF   78 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----CTTCCEEEEC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhC-CCcEEEEeCCCCCCce---------ECCEeeeCCHHHHhhc----CCCCCEEEEe
Confidence            588999999999999999998875 8898888886532221         2589999999999741    24 9999999


Q ss_pred             CCchhHHHHHHHHHHcCCC-EEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          114 TDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~-vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      ++|+.+.++++.|+++|++ +|+.|+|+++++.++|.++|+++++. ++.|| ++|+
T Consensus        79 vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN-c~Gi  133 (297)
T 2yv2_A           79 VPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIGPN-CPGA  133 (297)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS-SCEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC-CCee
Confidence            9999999999999999999 78889999998889999999998875 78899 7775

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=99.63  E-value=7.5e-16  Score=148.03  Aligned_cols=135  Identities=14%  Similarity=0.118  Sum_probs=111.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc--------CCcEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhccccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQS  104 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--------~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~  104 (300)
                      .+|||||+|+ |.||+.+++.+.+.        ++++|++++|++.  ..+..++   .++++ ++|+|++++++    +
T Consensus        25 ~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~--~~a~~~a---~~~~~~~~y~d~~~ll~----~   94 (412)
T 4gqa_A           25 ARLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQ--AMAERHA---AKLGAEKAYGDWRELVN----D   94 (412)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSH--HHHHHHH---HHHTCSEEESSHHHHHH----C
T ss_pred             ccceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEEEEEcCCH--HHHHHHH---HHcCCCeEECCHHHHhc----C
Confidence            3699999998 99999999988764        4689999999753  2233333   34566 48999999997    3


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHHH
Q 022250          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAIS  178 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~~  178 (300)
                      .++|+|+.+|++..+.+++..|+++||||+|++| +.+.++.++|.++|+++++.+.+.-|+  ...+..++++.+.
T Consensus        95 ~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~  171 (412)
T 4gqa_A           95 PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNNIKTPAALLAKQIIAR  171 (412)
T ss_dssp             TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEECGGGTSHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeeccceecCHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999 899999999999999999998887774  4455455555543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=99.63  E-value=4.5e-15  Score=138.89  Aligned_cols=147  Identities=8%  Similarity=0.074  Sum_probs=115.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCCccEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      .|+||+|+|+ |+||+.+++.+. +.+++++++++|++.  ..+..++   ..+|+ ++|+|++++++    +.++|+|+
T Consensus         7 ~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~l~----~~~~D~V~   76 (346)
T 3cea_A            7 KPLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDS--NQLEWAK---NELGVETTYTNYKDMID----TENIDAIF   76 (346)
T ss_dssp             CCEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCH--HHHHHHH---HTTCCSEEESCHHHHHT----TSCCSEEE
T ss_pred             CcceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCH--HHHHHHH---HHhCCCcccCCHHHHhc----CCCCCEEE
Confidence            3699999998 999999999988 778999999999753  2222333   34566 67899999986    24799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhC-CCeEEEcCC--CcHHHHHHHHHHHHhccCCCCeE
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKA-SMGCLIAPT--LSIGSILLQQAAISASFHYKNVE  187 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~-~i~iv~a~N--~SiGv~ll~~~a~~~~~~~~die  187 (300)
                      ++|++..+.+.+..|+++|++|++++| +.+.++.++|.++++++ ++.++.+.|  |+.+...+.++.+.  ...-++.
T Consensus        77 i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~--g~iG~i~  154 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDN--GDIGKII  154 (346)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHT--TTTCSEE
T ss_pred             EeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHc--CCCCCeE
Confidence            999999999999999999999999998 78899999999999998 988887776  45566556555532  1234555


Q ss_pred             EEEcc
Q 022250          188 IVESR  192 (300)
Q Consensus       188 IiE~H  192 (300)
                      .++.+
T Consensus       155 ~v~~~  159 (346)
T 3cea_A          155 YMRGY  159 (346)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55553

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=99.62  E-value=2.1e-15  Score=142.56  Aligned_cols=123  Identities=11%  Similarity=0.151  Sum_probs=103.3

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC----cceecCHHHHHhcccccCCcc
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE----IPVMSDLTMVLGSISQSKARA  108 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g----v~v~~dl~~~l~~~~~~~~~D  108 (300)
                      ..|+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++   ..++    +++|+|++++++    +.++|
T Consensus         4 ~~~~~vgiiG~-G~ig~~~~~~l~~~~~~~lv~v~d~~~--~~~~~~a---~~~~~~~~~~~~~~~~~ll~----~~~~D   73 (362)
T 1ydw_A            4 ETQIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSL--EKAKAFA---TANNYPESTKIHGSYESLLE----DPEID   73 (362)
T ss_dssp             --CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HHTTCCTTCEEESSHHHHHH----CTTCC
T ss_pred             CCceEEEEECc-hHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHH---HHhCCCCCCeeeCCHHHHhc----CCCCC
Confidence            34699999998 999999999999889999999999753  2222222   2233    567899999996    25799


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      +|+.+|++..+.+++..|+++|+||++++| +.+.++.++|.++|+++++.++.+.|+
T Consensus        74 ~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~~~~  131 (362)
T 1ydw_A           74 ALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMW  131 (362)
T ss_dssp             EEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCG
T ss_pred             EEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEee
Confidence            999999999999999999999999999998 789999999999999999998877654

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=99.62  E-value=4.8e-15  Score=137.08  Aligned_cols=119  Identities=18%  Similarity=0.281  Sum_probs=101.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|++|+||+.+++.+.+. ++++++.+++...|.         ..+|+++|+|++++.++    .++|++|+|+
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p~~~g~---------~~~G~~vy~sl~el~~~----~~~D~viI~t   72 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGT---------THLGLPVFNTVREAVAA----TGATASVIYV   72 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC---------EETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCcccc---------eeCCeeccCCHHHHhhc----CCCCEEEEec
Confidence            589999999999999999998875 789998888753221         13688999999999851    3799999999


Q ss_pred             CchhHHHHHHHHHHcCCCE-EEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          115 DASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~v-VigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      +|+.+.+.++.|+++|+++ |+.|+|++.++.++|.++|+++++. ++.|| ++|+
T Consensus        73 P~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~-liGPN-c~Gi  126 (288)
T 2nu8_A           73 PAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVR-MIGPN-TPGV  126 (288)
T ss_dssp             CGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS-CCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEecC-Ccce
Confidence            9999999999999999997 5667799998889999999999886 68999 5553

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=99.62  E-value=2.2e-15  Score=139.83  Aligned_cols=119  Identities=19%  Similarity=0.333  Sum_probs=101.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..||+|+|++|+||+.+++.+.+ .++++++.+++...|+.         -.|+++|+|++++.++    .++|++|+|+
T Consensus        13 ~~~v~V~Gasg~~G~~~~~~l~~-~g~~~V~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~Dv~ii~v   78 (294)
T 2yv1_A           13 NTKAIVQGITGRQGSFHTKKMLE-CGTKIVGGVTPGKGGQN---------VHGVPVFDTVKEAVKE----TDANASVIFV   78 (294)
T ss_dssp             TCCEEEETTTSHHHHHHHHHHHH-TTCCEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHh-CCCeEEEEeCCCCCCce---------ECCEeeeCCHHHHhhc----CCCCEEEEcc
Confidence            57899999999999999999886 48888888886532221         2578999999999742    3799999999


Q ss_pred             CchhHHHHHHHHHHcCCC-EEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          115 DASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~-vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      +|+.+.+.++.|+++|++ +|+.|+|+++++.++|.++|+++++. ++.|| ++|+
T Consensus        79 p~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN-c~Gi  132 (294)
T 2yv1_A           79 PAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK-IIGPN-TPGI  132 (294)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSS-CCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC-Ccee
Confidence            999999999999999999 77789999998889999999998875 78899 7775

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=99.61  E-value=2.6e-15  Score=141.07  Aligned_cols=145  Identities=12%  Similarity=0.054  Sum_probs=114.6

Q ss_pred             cceEEEEcCCc-hHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVK-EIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~G-rMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ++||+|+|+ | .||+.+++.+.+. ++++|++++|++.  ..+..++   ..+++ ++|+|++++++    +.++|+|+
T Consensus        18 ~irvgiIG~-G~~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~----~~~vD~V~   87 (340)
T 1zh8_A           18 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFA---KMVGNPAVFDSYEELLE----SGLVDAVD   87 (340)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHH---HHHSSCEEESCHHHHHH----SSCCSEEE
T ss_pred             ceeEEEEec-CHHHHHHHHHHHHhCCCceEEEEEEcCCH--HHHHHHH---HHhCCCcccCCHHHHhc----CCCCCEEE
Confidence            699999998 9 8999999999888 8999999999753  2223333   24555 78999999997    35799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHHHhccCCCCeEE
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEI  188 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~~~~~~~~dieI  188 (300)
                      .+|++..+.+.+..|+++|+||++++| +.+.++.++|.++|+++++.+.++.|+  +..+..+.++.+.  ...-++.-
T Consensus        88 i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~  165 (340)
T 1zh8_A           88 LTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFWKAKELVES--GAIGDPVF  165 (340)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHHHHHHHHHT--TTTSSEEE
T ss_pred             EeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhc--CCCCCcEE
Confidence            999999999999999999999999999 789999999999999999988877665  4444444554432  22335554


Q ss_pred             EEc
Q 022250          189 VES  191 (300)
Q Consensus       189 iE~  191 (300)
                      ++.
T Consensus       166 v~~  168 (340)
T 1zh8_A          166 MNW  168 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=99.61  E-value=3.4e-15  Score=138.63  Aligned_cols=119  Identities=14%  Similarity=0.233  Sum_probs=100.4

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..++   ..+|+++++|++++ +     .++|+|+.+
T Consensus         5 ~~~vgiiG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~--~~~~~~~---~~~g~~~~~~~~~l-~-----~~~D~V~i~   72 (319)
T 1tlt_A            5 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTR--AKALPIC---ESWRIPYADSLSSL-A-----ASCDAVFVH   72 (319)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSC--TTHHHHH---HHHTCCBCSSHHHH-H-----TTCSEEEEC
T ss_pred             cceEEEECC-CHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCccCcHHHh-h-----cCCCEEEEe
Confidence            589999998 999996 999888889999999999764  2222232   23466788899877 4     589999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      |++..+.+.+..|+++|++|++++| +.+.++.++|.++|+++++.++.+-|+
T Consensus        73 tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~  125 (319)
T 1tlt_A           73 SSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNR  125 (319)
T ss_dssp             SCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGG
T ss_pred             CCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeeec
Confidence            9999999999999999999999998 789999999999999999888776554

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=99.61  E-value=5.8e-15  Score=139.64  Aligned_cols=131  Identities=16%  Similarity=0.130  Sum_probs=111.0

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..     .-.++++|+|++++++    +.++|+|+.+
T Consensus         5 ~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~~ll~----~~~vD~V~i~   72 (358)
T 3gdo_A            5 TIKVGILGY-GLSGSVFHGPLLDVLDEYQISKIMTSRT--EEVKR-----DFPDAEVVHELEEITN----DPAIELVIVT   72 (358)
T ss_dssp             CEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECSCH--HHHHH-----HCTTSEEESSTHHHHT----CTTCCEEEEC
T ss_pred             cceEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHh-----hCCCCceECCHHHHhc----CCCCCEEEEc
Confidence            599999998 999996 899888889999999999753  11211     1126788999999997    3679999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHH
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAI  177 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~  177 (300)
                      |++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++++.+.+..|  |...+..+.++.+
T Consensus        73 tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~  139 (358)
T 3gdo_A           73 TPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLIS  139 (358)
T ss_dssp             SCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHHh
Confidence            9999999999999999999999999 89999999999999999999998887  5666666666654

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=99.61  E-value=4e-15  Score=140.92  Aligned_cols=145  Identities=15%  Similarity=0.143  Sum_probs=113.3

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCC-CcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ++||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..++   ..+ ++++|+|++++++.    .++|+|+.
T Consensus         5 ~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V~i   74 (359)
T 3m2t_A            5 LIKVGLVGI-GAQMQENLLPSLLQMQDIRIVAACDSDL--ERARRVH---RFISDIPVLDNVPAMLNQ----VPLDAVVM   74 (359)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTCTTEEEEEEECSSH--HHHGGGG---GTSCSCCEESSHHHHHHH----SCCSEEEE
T ss_pred             cceEEEECC-CHHHHHHHHHHHHhCCCcEEEEEEcCCH--HHHHHHH---HhcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            589999998 999995 899999889999999999753  2223333   234 56789999999973    57899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc--HHHHHHHHHHHHhccCCCCeEEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHYKNVEIV  189 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S--iGv~ll~~~a~~~~~~~~dieIi  189 (300)
                      +|++..+.+.+..|+++||||+|++| +.+.++.++|.++++++++.+.++.|+-  ..+..+.++.+.  +..-++..+
T Consensus        75 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~  152 (359)
T 3m2t_A           75 AGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGMNFKFARPVRQLREMTQV--DEFGETLHI  152 (359)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHCHHHHHHHHHHTS--GGGCCEEEE
T ss_pred             cCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCcHHHHHHHHHHHC--CCCCCeEEE
Confidence            99999999999999999999999999 8999999999999999999888877643  333333333321  123355555


Q ss_pred             Ec
Q 022250          190 ES  191 (300)
Q Consensus       190 E~  191 (300)
                      +.
T Consensus       153 ~~  154 (359)
T 3m2t_A          153 QL  154 (359)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=99.61  E-value=2.5e-15  Score=138.88  Aligned_cols=121  Identities=17%  Similarity=0.229  Sum_probs=103.7

Q ss_pred             CcceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      +|+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..++   ..+|++.|+|++++++      ++|+|+.
T Consensus         5 ~~~~igiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~~~~~~~~~~~ll~------~~D~V~i   72 (308)
T 3uuw_A            5 KNIKMGMIGL-GSIAQKAYLPILTKSERFEFVGAFTPNK--VKREKIC---SDYRIMPFDSIESLAK------KCDCIFL   72 (308)
T ss_dssp             CCCEEEEECC-SHHHHHHTHHHHTSCSSSEEEEEECSCH--HHHHHHH---HHHTCCBCSCHHHHHT------TCSEEEE
T ss_pred             ccCcEEEEec-CHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCCcCCHHHHHh------cCCEEEE
Confidence            3689999998 999996 999888889999999999753  2233333   3456777999999994      7999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+.++-|+-
T Consensus        73 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r  127 (308)
T 3uuw_A           73 HSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGFNRR  127 (308)
T ss_dssp             CCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGG
T ss_pred             eCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Confidence            99999999999999999999999999 7899999999999999999888876643

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=99.60  E-value=1e-14  Score=134.75  Aligned_cols=120  Identities=15%  Similarity=0.158  Sum_probs=103.3

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      +.|+||+|+|+ |.||+.+++.+..   .++++|++++|++...          ..++++ +.|++++++    +.++|+
T Consensus         5 ~~~~rvgiIG~-G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----------~~~g~~-~~~~~ell~----~~~vD~   68 (294)
T 1lc0_A            5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----------SLDEVR-QISLEDALR----SQEIDV   68 (294)
T ss_dssp             CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----------EETTEE-BCCHHHHHH----CSSEEE
T ss_pred             CCcceEEEEEE-cHHHHHHHHHHhccccCCCEEEEEEECchHHH----------HHcCCC-CCCHHHHhc----CCCCCE
Confidence            34799999998 9999999998876   6889999999875311          234565 589999997    367999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~SiG  168 (300)
                      |+.+|++..+.+++..|+++||||+|++| ..+.++.++|.++++++|+.++.+.|+-..
T Consensus        69 V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~  128 (294)
T 1lc0_A           69 AYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLM  128 (294)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGS
T ss_pred             EEEeCCcHhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcc
Confidence            99999999999999999999999999999 789999999999999999998888887654

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=99.60  E-value=5.7e-15  Score=140.06  Aligned_cols=144  Identities=10%  Similarity=0.049  Sum_probs=112.6

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC-cceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ++||+|+|+ |++|.. ++..+. .++++|++++|++.  ..+..++   ..++ .++|+|++++++    +.++|+|+.
T Consensus        26 ~irvgiiG~-G~~~~~~~~~~~~-~~~~~lvav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~----~~~vD~V~I   94 (361)
T 3u3x_A           26 ELRFAAVGL-NHNHIYGQVNCLL-RAGARLAGFHEKDD--ALAAEFS---AVYADARRIATAEEILE----DENIGLIVS   94 (361)
T ss_dssp             CCEEEEECC-CSTTHHHHHHHHH-HTTCEEEEEECSCH--HHHHHHH---HHSSSCCEESCHHHHHT----CTTCCEEEE
T ss_pred             CcEEEEECc-CHHHHHHHHHHhh-cCCcEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhc----CCCCCEEEE
Confidence            589999998 999964 666655 68999999999753  2233333   3455 578999999997    357999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC---cHHHHHHHHHHHHhccCCCCeEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL---SIGSILLQQAAISASFHYKNVEI  188 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~---SiGv~ll~~~a~~~~~~~~dieI  188 (300)
                      +|++..+.+.+..|+++||||+|++| ..+.++.++|.++|+++++.+.+..|+   +..+..+.++.+.  +..-++..
T Consensus        95 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~~p~~~~~k~~i~~--g~iG~i~~  172 (361)
T 3u3x_A           95 AAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAA--GAIGEVVH  172 (361)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHTCHHHHHHHHHHHT--TTTSSEEE
T ss_pred             eCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhhCCHHHHHHHHHHHc--CCCCCeEE
Confidence            99999999999999999999999999 899999999999999999999988886   3555555555532  12334444


Q ss_pred             EEc
Q 022250          189 VES  191 (300)
Q Consensus       189 iE~  191 (300)
                      ++.
T Consensus       173 ~~~  175 (361)
T 3u3x_A          173 IVG  175 (361)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=99.59  E-value=6.4e-15  Score=143.17  Aligned_cols=147  Identities=9%  Similarity=0.025  Sum_probs=114.6

Q ss_pred             CcceEEEEcCCchHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc-----ceecCHHHHHhcccccCCc
Q 022250           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-----PVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-----~v~~dl~~~l~~~~~~~~~  107 (300)
                      .++||+|+|+ |+||+ .+++.+.+.++++|++++|++.  ..+..+.   ..+++     .+|+|++++++    +.++
T Consensus        82 ~~irigiIG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~~~~ll~----~~~v  151 (433)
T 1h6d_A           82 RRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNA--EKAKIVA---AEYGVDPRKIYDYSNFDKIAK----DPKI  151 (433)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCH--HHHHHHH---HHTTCCGGGEECSSSGGGGGG----CTTC
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHH---HHhCCCcccccccCCHHHHhc----CCCC
Confidence            3699999998 99997 8999998888999999999753  1222222   23344     36899999986    3579


Q ss_pred             cEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHHHhccCCC
Q 022250          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYK  184 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~~~~~~~~  184 (300)
                      |+|+++|++..+.+++..|+++|+||++++| +.+.++.++|.++++++++.++++.|+  +.....+.++.+.  ...-
T Consensus       152 D~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~iG  229 (433)
T 1h6d_A          152 DAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRE--NQLG  229 (433)
T ss_dssp             CEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHT--TSSC
T ss_pred             CEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEechhcCHHHHHHHHHHHc--CCCC
Confidence            9999999999999999999999999999998 789999999999999999988887764  5555555555432  2234


Q ss_pred             CeEEEEcc
Q 022250          185 NVEIVESR  192 (300)
Q Consensus       185 dieIiE~H  192 (300)
                      ++..++.+
T Consensus       230 ~i~~v~~~  237 (433)
T 1h6d_A          230 KLGMVTTD  237 (433)
T ss_dssp             SEEEEEEE
T ss_pred             CcEEEEEE
Confidence            56655653

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=99.59  E-value=4.6e-15  Score=146.15  Aligned_cols=160  Identities=14%  Similarity=0.132  Sum_probs=121.3

Q ss_pred             eccccCccccccccee--------eEeecCCCCCcceEEEEcCC---chHHHHHHHHHHhc-CCcEEEEEEecCCCCcch
Q 022250            9 HCRMHHISQNVKAKRF--------ISCSTNPPQSNIKVIINGAV---KEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDI   76 (300)
Q Consensus         9 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ikV~V~Ga~---GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~   76 (300)
                      |.--||.+.|++.-+-        .+.|+-|++.++||+|+|++   |.||+.+++.+.+. ++++|++++|++.  ..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~--~~a   82 (479)
T 2nvw_A            5 HHHHHHSSENLYFQGHMLANNNKRSKLSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL--KSS   82 (479)
T ss_dssp             ---CTTCGGGTGGGTCCCCCCCTTSGGGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH--HHH
T ss_pred             cccccccchhHHHHHHHHhhccccccCCCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCH--HHH
Confidence            3445666666654332        22344444446999999983   99999999999987 8999999999753  222


Q ss_pred             hhhhcCcCCCCcc---eecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcC------CCEEEeCC-CCCHHHHH
Q 022250           77 GMVCDMEQPLEIP---VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVS  146 (300)
Q Consensus        77 ~~~~g~~~~~gv~---v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G------~~vVigTT-G~~~e~~~  146 (300)
                      ..++   ..+|++   +|+|++++++    +.++|+|+.+|++..+.+.+..|+++|      +||+|++| ..+.++.+
T Consensus        83 ~~~a---~~~g~~~~~~~~d~~ell~----~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~  155 (479)
T 2nvw_A           83 LQTI---EQLQLKHATGFDSLESFAQ----YKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAE  155 (479)
T ss_dssp             HHHH---HHTTCTTCEEESCHHHHHH----CTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHH
T ss_pred             HHHH---HHcCCCcceeeCCHHHHhc----CCCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHH
Confidence            2233   245554   8999999997    357999999999999999999999999      99999998 78999999


Q ss_pred             HHHHHhhhCC-CeEEEcCCC--cHHHHHHHHHHH
Q 022250          147 ALSAFCDKAS-MGCLIAPTL--SIGSILLQQAAI  177 (300)
Q Consensus       147 ~L~~~a~~~~-i~iv~a~N~--SiGv~ll~~~a~  177 (300)
                      +|.++|++++ +.+.++.|+  +..+..+.++.+
T Consensus       156 ~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~  189 (479)
T 2nvw_A          156 ELYSISQQRANLQTIICLQGRKSPYIVRAKELIS  189 (479)
T ss_dssp             HHHHHHHTCTTCEEEEECGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEEEeccccCHHHHHHHHHHH
Confidence            9999999999 888877664  455555555553

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=99.58  E-value=2.3e-14  Score=133.46  Aligned_cols=126  Identities=12%  Similarity=0.137  Sum_probs=103.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcc---c-ccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSI---S-QSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~---~-~~~~~DVV  110 (300)
                      |+||+|+|+.|.||+.+++.+.+. +.+|++++|++..-   ..+..  ...++++|+|++++++.+   . ++.++|+|
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~---~~~~~--~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V   76 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNV---GLVDS--FFPEAEFFTEPEAFEAYLEDLRDRGEGVDYL   76 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCC---GGGGG--TCTTCEEESCHHHHHHHHHHHHHTTCCCSEE
T ss_pred             ceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHH---HHHHh--hCCCCceeCCHHHHHHHhhhhcccCCCCcEE
Confidence            699999998678999999999875 79999999976421   12211  123678899999998100   0 03689999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      +.+|++..+.++++.|+++||||+|++| ..+.++.++|.++|+++++.+..+.|+-
T Consensus        77 ~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R  133 (312)
T 3o9z_A           77 SIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVLQLR  133 (312)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECCGGG
T ss_pred             EECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEeehh
Confidence            9999999999999999999999999999 8999999999999999999888777754

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=99.58  E-value=3.9e-15  Score=140.35  Aligned_cols=145  Identities=14%  Similarity=0.093  Sum_probs=112.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-------EEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-------EVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-------eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~  106 (300)
                      ++||||+|+ |.||+.+++.+.+.|++       +|++++|++.  ..+..++   .++|+ ++|+|++++++    +.+
T Consensus         6 klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~--~~a~~~a---~~~g~~~~~~d~~~ll~----~~~   75 (390)
T 4h3v_A            6 NLGIGLIGY-AFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDA--EAVRAAA---GKLGWSTTETDWRTLLE----RDD   75 (390)
T ss_dssp             EEEEEEECH-HHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSH--HHHHHHH---HHHTCSEEESCHHHHTT----CTT
T ss_pred             cCcEEEEcC-CHHHHHHHHHHHhCccccccccCceEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhc----CCC
Confidence            589999998 99999999998876654       9999999763  2233333   34565 47899999997    368


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHH---hhhCCCeEEEcCCC--cHHHHHHHHHHHHhc
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAF---CDKASMGCLIAPTL--SIGSILLQQAAISAS  180 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~---a~~~~i~iv~a~N~--SiGv~ll~~~a~~~~  180 (300)
                      +|+|+.+|++..|.+.+..|+++||||+|++| +.+.++.++|.++   ++++++.+.+.-|+  +..+..+.++.+.  
T Consensus        76 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~~R~~p~~~~~k~~i~~--  153 (390)
T 4h3v_A           76 VQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFTYRRVPAIALARKLVAD--  153 (390)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHT--
T ss_pred             CCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceEEEeeeccCchHHHHHHHHHc--
Confidence            99999999999999999999999999999999 8999999998655   66688888887775  4444444555432  


Q ss_pred             cCCCCeEEEEc
Q 022250          181 FHYKNVEIVES  191 (300)
Q Consensus       181 ~~~~dieIiE~  191 (300)
                      ...-++.-++.
T Consensus       154 g~iG~i~~v~~  164 (390)
T 4h3v_A          154 GKIGTVRHVRA  164 (390)
T ss_dssp             TSSCSEEEEEE
T ss_pred             CCCCcceeeEE
Confidence            22345555554

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=99.58  E-value=7.2e-15  Score=140.90  Aligned_cols=149  Identities=15%  Similarity=0.106  Sum_probs=114.6

Q ss_pred             cceEEEEcCCch---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhhcCcCCCCc---ceecCHHHHHhccc-ccCC
Q 022250           35 NIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg-~vd~~~~g~d~~~~~g~~~~~gv---~v~~dl~~~l~~~~-~~~~  106 (300)
                      ++||+|+|+ |+   ||+.++..+...++++|++ ++|++.  ..+..++   .++|+   ++|+|++++++..+ .+.+
T Consensus        12 ~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a---~~~g~~~~~~~~~~~~ll~~~~~~~~~   85 (398)
T 3dty_A           12 PIRWAMVGG-GSQSQIGYIHRCAALRDNTFVLVAGAFDIDP--IRGSAFG---EQLGVDSERCYADYLSMFEQEARRADG   85 (398)
T ss_dssp             CEEEEEEEC-CTTCSSHHHHHHHHHGGGSEEEEEEECCSSH--HHHHHHH---HHTTCCGGGBCSSHHHHHHHHTTCTTC
T ss_pred             cceEEEEcC-CccchhHHHHHHHHhhCCCeEEEEEEeCCCH--HHHHHHH---HHhCCCcceeeCCHHHHHhcccccCCC
Confidence            699999998 99   9999999998888999998 678653  2223333   35677   68999999996200 0035


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc--HHHHHHHHHHHHhccCC
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHY  183 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S--iGv~ll~~~a~~~~~~~  183 (300)
                      +|+|+.+|++..+.+++..|+++||||+|++| +.+.++.++|.++++++++.+.++.|+-  ..+..+.++.+.  ...
T Consensus        86 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--G~i  163 (398)
T 3dty_A           86 IQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGHQLIEQAREMIAA--GEL  163 (398)
T ss_dssp             CSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHHT--TTT
T ss_pred             CCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhc--CCC
Confidence            99999999999999999999999999999999 8999999999999999999988887764  344444444432  223


Q ss_pred             CCeEEEEc
Q 022250          184 KNVEIVES  191 (300)
Q Consensus       184 ~dieIiE~  191 (300)
                      -++..++.
T Consensus       164 G~i~~v~~  171 (398)
T 3dty_A          164 GDVRMVHM  171 (398)
T ss_dssp             CSEEEEEE
T ss_pred             CCeEEEEE
Confidence            45555554

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=99.58  E-value=2e-14  Score=139.93  Aligned_cols=153  Identities=10%  Similarity=0.043  Sum_probs=114.9

Q ss_pred             CCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC---cceec----CHHHHHhcccc
Q 022250           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMS----DLTMVLGSISQ  103 (300)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g---v~v~~----dl~~~l~~~~~  103 (300)
                      ++++++||+|+|+ |.||+.+++.+.+.++++|++++|++.  ..+..++..-.++|   +++|+    |++++++    
T Consensus        16 ~~~~~~rvgiIG~-G~~g~~h~~~l~~~~~~~lvav~d~~~--~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~----   88 (444)
T 2ixa_A           16 FNPKKVRIAFIAV-GLRGQTHVENMARRDDVEIVAFADPDP--YMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLK----   88 (444)
T ss_dssp             ---CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSCH--HHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTT----
T ss_pred             CCCCCceEEEEec-CHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHHHHHHhcCCCCCceeccCCCCHHHHhc----
Confidence            3344799999998 999999999999889999999999753  22222210000123   56788    9999996    


Q ss_pred             cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHhc
Q 022250          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISAS  180 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~~  180 (300)
                      +.++|+|+.+|++..+.+.+..|+++||||+|++| ..+.++.++|.++|+++++.+.+..|  |..+...+.++++.  
T Consensus        89 ~~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--  166 (444)
T 2ixa_A           89 DKNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMALENVCYRRDVMAILNMVRK--  166 (444)
T ss_dssp             CTTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHHT--
T ss_pred             CCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHHc--
Confidence            35799999999999999999999999999999999 78999999999999999988887665  45554444444432  


Q ss_pred             cCCCCeEEEEcc
Q 022250          181 FHYKNVEIVESR  192 (300)
Q Consensus       181 ~~~~dieIiE~H  192 (300)
                      ...-++.-++.+
T Consensus       167 G~iG~i~~v~~~  178 (444)
T 2ixa_A          167 GMFGELVHGTGG  178 (444)
T ss_dssp             TTTCSEEEEEEC
T ss_pred             CCCCCeEEEEEE
Confidence            123466666653

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=99.57  E-value=2.4e-14  Score=133.19  Aligned_cols=143  Identities=15%  Similarity=0.083  Sum_probs=111.7

Q ss_pred             ceEEEEcCCchHHHHH-HHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAA-VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i-~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |||+|+|+ |+||+.+ ++.+.+ +++++++++|++.  ..+..++   ..++++ +|+|++++++    +.++|+|+.+
T Consensus         1 ~~vgiiG~-G~~g~~~~~~~l~~-~~~~~vav~d~~~--~~~~~~~---~~~g~~~~~~~~~~~l~----~~~~D~V~i~   69 (332)
T 2glx_A            1 NRWGLIGA-STIAREWVIGAIRA-TGGEVVSMMSTSA--ERGAAYA---TENGIGKSVTSVEELVG----DPDVDAVYVS   69 (332)
T ss_dssp             CEEEEESC-CHHHHHTHHHHHHH-TTCEEEEEECSCH--HHHHHHH---HHTTCSCCBSCHHHHHT----CTTCCEEEEC
T ss_pred             CeEEEEcc-cHHHHHhhhHHhhc-CCCeEEEEECCCH--HHHHHHH---HHcCCCcccCCHHHHhc----CCCCCEEEEe
Confidence            58999998 9999998 888887 8999999999753  2222233   245664 7899999986    2479999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHHHhccCCCCeEEEE
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIVE  190 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~~~~~~~~dieIiE  190 (300)
                      |++..+.+.+..|+++|+||++++| +.+.++.++|.++++++++.++.+.|+  ..++..+.++.+.  ...-++.-++
T Consensus        70 tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~--g~iG~i~~v~  147 (332)
T 2glx_A           70 TTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAE--GRIGRPIAAR  147 (332)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHT--TTTSSEEEEE
T ss_pred             CChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHHc--CCCCCeEEEE
Confidence            9999999999999999999999998 789999999999999999998888774  4555555555532  1233444444


Q ss_pred             c
Q 022250          191 S  191 (300)
Q Consensus       191 ~  191 (300)
                      .
T Consensus       148 ~  148 (332)
T 2glx_A          148 V  148 (332)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=99.57  E-value=5.3e-15  Score=138.59  Aligned_cols=146  Identities=10%  Similarity=0.029  Sum_probs=111.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      ||+||+|+|+ |.+|+.+++.+  .++++|++++|++.  ..+.+.+.+   .+++  .++|+|++++++.    .++|+
T Consensus         1 M~~rvgiiG~-G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~----~~vD~   70 (337)
T 3ip3_A            1 MSLKICVIGS-SGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAI---SEMNIKPKKYNNWWEMLEK----EKPDI   70 (337)
T ss_dssp             -CEEEEEECS-SSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHH---HTTTCCCEECSSHHHHHHH----HCCSE
T ss_pred             CceEEEEEcc-chhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHH---HHcCCCCcccCCHHHHhcC----CCCCE
Confidence            6899999998 88888988877  79999999999753  222333322   2334  4789999999973    57999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCe--EEEcCC--CcHHHHHHHHHHHHhccCCC
Q 022250          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG--CLIAPT--LSIGSILLQQAAISASFHYK  184 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~--iv~a~N--~SiGv~ll~~~a~~~~~~~~  184 (300)
                      |+.+|++..+.+.+..|+++||||+|++| +.+.++.++|.++|+++++.  +.+.-|  |+.....+.++.+.  ...-
T Consensus        71 V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i~~--g~iG  148 (337)
T 3ip3_A           71 LVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVSE--GAVG  148 (337)
T ss_dssp             EEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHHHH--TTTS
T ss_pred             EEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHHHHHHHHHhc--CCcc
Confidence            99999999999999999999999999999 89999999999999999988  555544  44555555555542  1234


Q ss_pred             CeEEEEc
Q 022250          185 NVEIVES  191 (300)
Q Consensus       185 dieIiE~  191 (300)
                      ++..++.
T Consensus       149 ~i~~i~~  155 (337)
T 3ip3_A          149 EIRLVNT  155 (337)
T ss_dssp             SEEEEEE
T ss_pred             ceEEEEE
Confidence            5555554

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=99.56  E-value=3.8e-14  Score=132.32  Aligned_cols=137  Identities=14%  Similarity=0.132  Sum_probs=108.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhc---cc--ccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGS---IS--QSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~---~~--~~~~~DV  109 (300)
                      |+||+|+|+.|.||+.+++.+.+. +.+|++++|++..-   ..+..  ...++++|+|++++++.   ++  ++.++|+
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~---~~~~~--~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~   76 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSV---GIIDS--ISPQSEFFTEFEFFLDHASNLKRDSATALDY   76 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCC---GGGGG--TCTTCEEESSHHHHHHHHHHHTTSTTTSCCE
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHH---HHHHh--hCCCCcEECCHHHHHHhhhhhhhccCCCCcE
Confidence            799999998678999999999875 89999999976421   12221  12367889999999820   00  0268999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHH
Q 022250          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAI  177 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~  177 (300)
                      |+.+|++..+.+++..|+++||||+|++| +.+.++.++|.++++++++.+..+.|+  .....-+.++.+
T Consensus        77 V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  147 (318)
T 3oa2_A           77 VSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKVA  147 (318)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred             EEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEEEEhhhcCHHHHHHHHHHh
Confidence            99999999999999999999999999999 899999999999999999988877764  344444455543

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=99.56  E-value=9.9e-15  Score=135.63  Aligned_cols=129  Identities=18%  Similarity=0.180  Sum_probs=104.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+.       ..|++ +.+++++++    ..++|+|+++|
T Consensus         9 ~irv~IIG~-G~iG~~~~~~l~~~~~~elvav~d~~~--~~~~-------~~g~~-~~~~~~l~~----~~~~DvViiat   73 (304)
T 3bio_A            9 KIRAAIVGY-GNIGRYALQALREAPDFEIAGIVRRNP--AEVP-------FELQP-FRVVSDIEQ----LESVDVALVCS   73 (304)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECC----------------CCTT-SCEESSGGG----SSSCCEEEECS
T ss_pred             CCEEEEECC-hHHHHHHHHHHhcCCCCEEEEEEcCCH--HHHH-------HcCCC-cCCHHHHHh----CCCCCEEEECC
Confidence            599999998 999999999999889999999999753  1111       13444 233333333    14799999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHH
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~  178 (300)
                      ++..+.+++..|+++|++|+++||  +.+.++.++|.++++++++.++++.+|+.|+..+.++.+.
T Consensus        74 p~~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~~~~~p~~~~~~~~i~~  139 (304)
T 3bio_A           74 PSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIASGWDPGSDSVVRTLMQ  139 (304)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHC
Confidence            999999999999999999999987  6788899999999999999889999999999877776544

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=99.56  E-value=4.7e-15  Score=141.84  Aligned_cols=118  Identities=17%  Similarity=0.278  Sum_probs=101.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ++||+|+|+ | +|+.+++++.+.+ ++||+|++|++.  +.+..++   .++|++.|+|++++++      ++|+|+..
T Consensus         7 ~~rv~VvG~-G-~g~~h~~a~~~~~~~~elvav~~~~~--~~a~~~a---~~~gv~~~~~~~~l~~------~~D~v~i~   73 (372)
T 4gmf_A            7 KQRVLIVGA-K-FGEMYLNAFMQPPEGLELVGLLAQGS--ARSRELA---HAFGIPLYTSPEQITG------MPDIACIV   73 (372)
T ss_dssp             CEEEEEECS-T-TTHHHHHTTSSCCTTEEEEEEECCSS--HHHHHHH---HHTTCCEESSGGGCCS------CCSEEEEC
T ss_pred             CCEEEEEeh-H-HHHHHHHHHHhCCCCeEEEEEECCCH--HHHHHHH---HHhCCCEECCHHHHhc------CCCEEEEE
Confidence            799999997 8 8999999988776 699999999764  3444555   5689999999999984      69999888


Q ss_pred             CCchhH----HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          114 TDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       114 T~p~~~----~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      |++..+    .+.++.|+++||||+|++| ++.++.++|.++|+++|+.+.+..|+-
T Consensus        74 ~p~~~h~~~~~~~a~~al~aGkhVl~EKP-l~~~ea~~l~~~A~~~g~~~~v~~~yr  129 (372)
T 4gmf_A           74 VRSTVAGGAGTQLARHFLARGVHVIQEHP-LHPDDISSLQTLAQEQGCCYWINTFYP  129 (372)
T ss_dssp             CC--CTTSHHHHHHHHHHHTTCEEEEESC-CCHHHHHHHHHHHHHHTCCEEEECSGG
T ss_pred             CCCcccchhHHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHHHHHcCCEEEEcCccc
Confidence            877666    8999999999999999999 788999999999999999999987764

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=99.56  E-value=1e-14  Score=140.98  Aligned_cols=149  Identities=17%  Similarity=0.139  Sum_probs=113.1

Q ss_pred             cceEEEEcCCch---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhhcCcCCCCc---ceecCHHHHHhccc-ccCC
Q 022250           35 NIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg-~vd~~~~g~d~~~~~g~~~~~gv---~v~~dl~~~l~~~~-~~~~  106 (300)
                      ++||+|+|+ |+   ||+.++..+...++++|++ ++|++.  ..+..++   ..+|+   ++|+|++++++... ...+
T Consensus        37 ~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a---~~~g~~~~~~~~~~~~ll~~~~~~~~~  110 (417)
T 3v5n_A           37 RIRLGMVGG-GSGAFIGAVHRIAARLDDHYELVAGALSSTP--EKAEASG---RELGLDPSRVYSDFKEMAIREAKLKNG  110 (417)
T ss_dssp             CEEEEEESC-C--CHHHHHHHHHHHHTSCEEEEEEECCSSH--HHHHHHH---HHHTCCGGGBCSCHHHHHHHHHHCTTC
T ss_pred             cceEEEEcC-CCchHHHHHHHHHHhhCCCcEEEEEEeCCCH--HHHHHHH---HHcCCCcccccCCHHHHHhcccccCCC
Confidence            589999998 99   9999999998888999997 778653  2223333   34566   58999999997100 0035


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc--HHHHHHHHHHHHhccCC
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHY  183 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S--iGv~ll~~~a~~~~~~~  183 (300)
                      +|+|+.+|++..+.+++..|+++||||+|++| +.+.++.++|.++++++++.+.++.|+-  ..+..+.++++.  ...
T Consensus       111 vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--G~i  188 (417)
T 3v5n_A          111 IEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNYTGYPMVRQAREMIEN--GDI  188 (417)
T ss_dssp             CSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGGGGSHHHHHHHHHHHT--TTT
T ss_pred             CcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCCHHHHHHHHHHhc--CCC
Confidence            99999999999999999999999999999999 8999999999999999999998888764  344444444432  223


Q ss_pred             CCeEEEEc
Q 022250          184 KNVEIVES  191 (300)
Q Consensus       184 ~dieIiE~  191 (300)
                      -++..++.
T Consensus       189 G~i~~v~~  196 (417)
T 3v5n_A          189 GAVRLVQM  196 (417)
T ss_dssp             CSEEEEEE
T ss_pred             CCeEEEEE
Confidence            45555554

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=99.55  E-value=1.6e-14  Score=137.35  Aligned_cols=146  Identities=14%  Similarity=0.189  Sum_probs=114.1

Q ss_pred             cceEEEEcCCchHHHH-HH----HHHHhcCCcEEE---------EEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHh
Q 022250           35 NIKVIINGAVKEIGRA-AV----IAVTKARGMEVA---------GAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLG   99 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~----~~i~~~~~~eLv---------g~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~   99 (300)
                      ++||+|+|++|.||+. ++    +.+.+.++++|+         +++|++.  ..+..++   ..++++ +|+|++++++
T Consensus         6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~--~~a~~~a---~~~~~~~~~~~~~~ll~   80 (383)
T 3oqb_A            6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSA--EKVEALA---KRFNIARWTTDLDAALA   80 (383)
T ss_dssp             EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSS--HHHHHHH---HHTTCCCEESCHHHHHH
T ss_pred             eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCH--HHHHHHH---HHhCCCcccCCHHHHhc
Confidence            6999999944999998 88    888888877765         6888654  2333333   356774 7999999997


Q ss_pred             cccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHH
Q 022250          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAA  176 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a  176 (300)
                          +.++|+|+.+|++..+.+++..|+++||||++++| +.+.++.++|.++|+++++.+.++.|  |...+..+.++.
T Consensus        81 ----~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i  156 (383)
T 3oqb_A           81 ----DKNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHGTVQDKLFLPGLKKIAFLR  156 (383)
T ss_dssp             ----CSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHH
T ss_pred             ----CCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCHHHHHHHHHH
Confidence                36799999999999999999999999999999999 79999999999999999999888887  455555555554


Q ss_pred             HHhccCCCCeEEEEc
Q 022250          177 ISASFHYKNVEIVES  191 (300)
Q Consensus       177 ~~~~~~~~dieIiE~  191 (300)
                      +.  ...-++.-++.
T Consensus       157 ~~--g~iG~i~~~~~  169 (383)
T 3oqb_A          157 DS--GFFGRILSVRG  169 (383)
T ss_dssp             HT--TTTSSEEEEEE
T ss_pred             Hc--CCCCCcEEEEE
Confidence            32  12334544443

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=99.54  E-value=2.9e-14  Score=138.68  Aligned_cols=134  Identities=12%  Similarity=0.069  Sum_probs=110.1

Q ss_pred             cceEEEEcC---CchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcc---eecCHHHHHhcccccCCc
Q 022250           35 NIKVIINGA---VKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---VMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        35 ~ikV~V~Ga---~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~---v~~dl~~~l~~~~~~~~~  107 (300)
                      ++||+|+|+   .|.||+.+++.+.+. ++++|++++|++.  ..+..++   ..++++   +|+|++++++    +.++
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~~ll~----~~~v   90 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKI--ETSIATI---QRLKLSNATAFPTLESFAS----SSTI   90 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTCTTCEEESSHHHHHH----CSSC
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCH--HHHHHHH---HHcCCCcceeeCCHHHHhc----CCCC
Confidence            599999998   499999999999988 8999999999753  1222232   234554   8999999997    3579


Q ss_pred             cEEEEcCCchhHHHHHHHHHHcC------CCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHH
Q 022250          108 AVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAI  177 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G------~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~  177 (300)
                      |+|+.+|++..+.+.+..|+++|      |||+|++| +.+.++.++|.++|+++++.++++-|  |...+.-+.++.+
T Consensus        91 D~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  169 (438)
T 3btv_A           91 DMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIISLQGRKSPYILRAKELIS  169 (438)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEECGGGGCHHHHHHHHHHH
T ss_pred             CEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEEecccccCHHHHHHHHHHH
Confidence            99999999999999999999999      99999998 78999999999999999988887766  4555555555554

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=99.53  E-value=5.6e-14  Score=136.98  Aligned_cols=149  Identities=18%  Similarity=0.102  Sum_probs=110.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----cC--c--------------CCCCcceecC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----DM--E--------------QPLEIPVMSD   93 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~----g~--~--------------~~~gv~v~~d   93 (300)
                      .++||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..++    |.  .              ....+.+|+|
T Consensus        22 k~IRVGIIGa-G~iG~~~~~~l~~~~~veLvAV~D~~~--era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D   98 (446)
T 3upl_A           22 KPIRIGLIGA-GEMGTDIVTQVARMQGIEVGALSARRL--PNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDD   98 (446)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTSSSEEEEEEECSST--HHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESC
T ss_pred             CceEEEEECC-hHHHHHHHHHHhhCCCcEEEEEEeCCH--HHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECC
Confidence            3699999998 999999999999999999999999754  2222221    20  0              0113568999


Q ss_pred             HHHHHhcccccCCccEEEEcCC-chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250           94 LTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (300)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll  172 (300)
                      ++++++    +.++|+||++|+ |+.+.+++..|+++|||||+.++.++.++.++|.++|+++|+.+.++..=..+  .+
T Consensus        99 ~eeLL~----d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~~~gdqp~--~~  172 (446)
T 3upl_A           99 NDLILS----NPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLGAGDEPS--SC  172 (446)
T ss_dssp             HHHHHT----CTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEECTTSHHH--HH
T ss_pred             HHHHhc----CCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeeecCCcchH--HH
Confidence            999997    367999999995 67789999999999999999887777778899999999999887777654444  44


Q ss_pred             HHHHHHhccCCCCeEEEEc
Q 022250          173 QQAAISASFHYKNVEIVES  191 (300)
Q Consensus       173 ~~~a~~~~~~~~dieIiE~  191 (300)
                      .++.+.+..-.+.+-....
T Consensus       173 ~eLv~~a~~~G~~~v~~Gk  191 (446)
T 3upl_A          173 MELIEFVSALGYEVVSAGK  191 (446)
T ss_dssp             HHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHhCCCeEEEecc
Confidence            4554433222344444443

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=99.52  E-value=8.6e-14  Score=130.04  Aligned_cols=144  Identities=10%  Similarity=0.073  Sum_probs=111.6

Q ss_pred             cceEEEEcCCchHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCC-CcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |+||+|+|+ |.||. .+++.+. .++++|++++|++.  ..+..++   ..+ ++++|+|++++++    +.++|+|+.
T Consensus         4 ~~rvgiiG~-G~~~~~~~~~~l~-~~~~~lvav~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~----~~~~D~V~i   72 (336)
T 2p2s_A            4 KIRFAAIGL-AHNHIYDMCQQLI-DAGAELAGVFESDS--DNRAKFT---SLFPSVPFAASAEQLIT----DASIDLIAC   72 (336)
T ss_dssp             CCEEEEECC-SSTHHHHHHHHHH-HTTCEEEEEECSCT--TSCHHHH---HHSTTCCBCSCHHHHHT----CTTCCEEEE
T ss_pred             ccEEEEECC-ChHHHHHhhhhhc-CCCcEEEEEeCCCH--HHHHHHH---HhcCCCcccCCHHHHhh----CCCCCEEEE
Confidence            699999998 99996 5777765 57999999999754  2222232   234 5678999999996    357999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHH-HHHHHHHHHHhccCCCCeEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIG-SILLQQAAISASFHYKNVEI  188 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiG-v~ll~~~a~~~~~~~~dieI  188 (300)
                      +|++..+.+.+..|+++|+||+|++| ..+.++.++|.++++++++.+.++-|+  ... +..+.++.+.  ...-++.-
T Consensus        73 ~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~~~~~i~~--g~iG~i~~  150 (336)
T 2p2s_A           73 AVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVYFNERINVDSALFAGELVQR--GEIGRVIQ  150 (336)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEECCTTTTTCHHHHHHHHHHHT--TTTSSEEE
T ss_pred             eCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCcHHHHHHHHHHhC--CCCCceEE
Confidence            99999999999999999999999998 789999999999999999988887775  434 5556665542  12335544


Q ss_pred             EEc
Q 022250          189 VES  191 (300)
Q Consensus       189 iE~  191 (300)
                      ++.
T Consensus       151 v~~  153 (336)
T 2p2s_A          151 TMG  153 (336)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=99.51  E-value=5.8e-14  Score=130.66  Aligned_cols=133  Identities=11%  Similarity=0.087  Sum_probs=104.9

Q ss_pred             CcceEEEEcCCchHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEE
Q 022250           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ||+||+|+|+ |+||+ .+++.+.+.++++|+ ++|++.  ..+..++   ..++++. +.|..++++     .++|+|+
T Consensus         1 m~~~igiIG~-G~ig~~~~~~~l~~~~~~~l~-v~d~~~--~~~~~~a---~~~g~~~~~~~~~~~l~-----~~~D~V~   68 (323)
T 1xea_A            1 MSLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLA---TRYRVSATCTDYRDVLQ-----YGVDAVM   68 (323)
T ss_dssp             -CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHH---HHTTCCCCCSSTTGGGG-----GCCSEEE
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHhCCCceEE-EEeCCH--HHHHHHH---HHcCCCccccCHHHHhh-----cCCCEEE
Confidence            5799999998 99998 599999888899999 998753  2222333   2456653 444444554     5799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHH
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAIS  178 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~  178 (300)
                      .+|+|..+.+.+..|+++|++|++++| ..+.++.++|.++++++++.++.+-|  |...+..+.++.+.
T Consensus        69 i~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~  138 (323)
T 1xea_A           69 IHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSELAQ  138 (323)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHHHHCHHHHH
T ss_pred             EECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHHHHHHHHhc
Confidence            999999999999999999999999998 78889999999999999998887766  46676666666544

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=99.41  E-value=1.7e-13  Score=128.95  Aligned_cols=140  Identities=14%  Similarity=0.103  Sum_probs=106.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc--------CCcEEEEEEecCCCC---cchhhhhcCcCCCCcceec--CHHHHHhcc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVG---EDIGMVCDMEQPLEIPVMS--DLTMVLGSI  101 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--------~~~eLvg~vd~~~~g---~d~~~~~g~~~~~gv~v~~--dl~~~l~~~  101 (300)
                      |+||+|+|+ |.||+.+++.+.+.        ++++|++++|++..-   .+...+... .....++|+  |++++++. 
T Consensus         2 mirvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~-~~~~~~~~~~~d~~~ll~~-   78 (327)
T 3do5_A            2 MIKIAIVGF-GTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRM-KRETGMLRDDAKAIEVVRS-   78 (327)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHH-HHHHSSCSBCCCHHHHHHH-
T ss_pred             cEEEEEEec-cHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhh-hccCccccCCCCHHHHhcC-
Confidence            699999998 99999999999887        899999999975310   011111100 001123555  99999973 


Q ss_pred             cccCCccEEEEcCCchhH----HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHH
Q 022250          102 SQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (300)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~----~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~  177 (300)
                         .++|+|||+|+++.+    .+++..|+++|+|||++..+.-..+.++|.++|+++++.+++-++..-|.-++..+-+
T Consensus        79 ---~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g~Pii~~l~~  155 (327)
T 3do5_A           79 ---ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKR  155 (327)
T ss_dssp             ---SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTTSCCHHHHHT
T ss_pred             ---CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeecCHHHHHHHH
Confidence               689999999988776    8999999999999999977654457889999999999999999988888777766655


Q ss_pred             Hhc
Q 022250          178 SAS  180 (300)
Q Consensus       178 ~~~  180 (300)
                      .+.
T Consensus       156 ~l~  158 (327)
T 3do5_A          156 YLA  158 (327)
T ss_dssp             TTT
T ss_pred             Hhh
Confidence            443

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=99.41  E-value=3.7e-13  Score=131.35  Aligned_cols=134  Identities=14%  Similarity=0.166  Sum_probs=108.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh---------cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK---------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~---------~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (300)
                      ++||+|+|+ |.||+.+++.+.+         .++++|++++|++.  .....++     .+.++|+|++++++    +.
T Consensus        10 ~irIgIIG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~--~~~~~~~-----~~~~~~~d~~ell~----d~   77 (444)
T 3mtj_A           10 PIHVGLLGL-GTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNL--DKAEALA-----GGLPLTTNPFDVVD----DP   77 (444)
T ss_dssp             CEEEEEECC-HHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCH--HHHHHHH-----TTCCEESCTHHHHT----CT
T ss_pred             cccEEEECC-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCH--HHhhhhc-----ccCcccCCHHHHhc----CC
Confidence            589999998 9999999987764         27899999999753  1222222     14578999999997    36


Q ss_pred             CccEEEEcCCc-hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhc
Q 022250          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (300)
Q Consensus       106 ~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~  180 (300)
                      ++|+|+++|++ +.+.+++..|+++|+|||+++++++.++.++|.++|+++|+.+.+-++..-|.-++..+-+.++
T Consensus        78 diDvVve~tp~~~~h~~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~giPii~~LrelL~  153 (444)
T 3mtj_A           78 EIDIVVELIGGLEPARELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGGIPIIKALREGLT  153 (444)
T ss_dssp             TCCEEEECCCSSTTHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCHHHHHHTTTT
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCChHHHHHHHHHHh
Confidence            89999999985 8999999999999999999999877888899999999999998887777777666665554443

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=99.39  E-value=2.9e-13  Score=127.28  Aligned_cols=148  Identities=20%  Similarity=0.186  Sum_probs=109.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc------CCcEEEEEEecCCC--C--cchhhhhcCcCCCC-cc--eecCHHHHHhcc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA------RGMEVAGAIDSHSV--G--EDIGMVCDMEQPLE-IP--VMSDLTMVLGSI  101 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~------~~~eLvg~vd~~~~--g--~d~~~~~g~~~~~g-v~--v~~dl~~~l~~~  101 (300)
                      ++||+|+|+ |+||+.+++.+.+.      ++++|+++.|++..  .  .|...+.....+.+ ++  .+ |.++++.  
T Consensus         4 ~irVgIiG~-G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~--   79 (325)
T 3ing_A            4 EIRIILMGT-GNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLM--   79 (325)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGT--
T ss_pred             eEEEEEEcC-cHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhc--
Confidence            599999998 99999999999876      78999999997531  1  11211110000111 11  23 6677775  


Q ss_pred             cccCCccEEEEcCCchh----HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHH
Q 022250          102 SQSKARAVVIDFTDAST----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (300)
Q Consensus       102 ~~~~~~DVVIDfT~p~~----~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~  177 (300)
                        +.++|||||+|++..    ..+++..|+++|+|||++++++..++.++|.++|+++++.+++-+++.-|..++..+-+
T Consensus        80 --~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giPii~~l~~  157 (325)
T 3ing_A           80 --GEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGVPLFSVLDY  157 (325)
T ss_dssp             --TSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHHHH
T ss_pred             --CCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccCHHHHHHHH
Confidence              368999999997654    37999999999999999988766688999999999999999999999999877766655


Q ss_pred             HhccCCCCeEEEE
Q 022250          178 SASFHYKNVEIVE  190 (300)
Q Consensus       178 ~~~~~~~dieIiE  190 (300)
                      .++  ...+.-++
T Consensus       158 ~l~--g~~I~~i~  168 (325)
T 3ing_A          158 SIL--PSKVKRFR  168 (325)
T ss_dssp             TCT--TCCEEEEE
T ss_pred             Hhh--CCCeeEEE
Confidence            553  24454444

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=99.37  E-value=3.9e-12  Score=115.45  Aligned_cols=198  Identities=16%  Similarity=0.085  Sum_probs=130.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -|||+++|+ |.||+.+++.   . ++||+++++ .+.    ++       .++.+++|++++++      ++|+||++.
T Consensus        12 ~~rV~i~G~-GaIG~~v~~~---~-~leLv~v~~-~k~----ge-------lgv~a~~d~d~lla------~pD~VVe~A   68 (253)
T 1j5p_A           12 HMTVLIIGM-GNIGKKLVEL---G-NFEKIYAYD-RIS----KD-------IPGVVRLDEFQVPS------DVSTVVECA   68 (253)
T ss_dssp             CCEEEEECC-SHHHHHHHHH---S-CCSEEEEEC-SSC----CC-------CSSSEECSSCCCCT------TCCEEEECS
T ss_pred             cceEEEECc-CHHHHHHHhc---C-CcEEEEEEe-ccc----cc-------cCceeeCCHHHHhh------CCCEEEECC
Confidence            489999997 9999999997   4 999999998 432    22       26677899999983      899999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCCC-C-CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEc-
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES-  191 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTTG-~-~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~-  191 (300)
                      .++++.+++..++++|+++|+..+| | +++..++|+++|++.+..+ +.|.-.+|..-..++++   .....+.++=+ 
T Consensus        69 ~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l-~vpSGAi~GlD~l~aa~---g~l~~V~~~t~K  144 (253)
T 1j5p_A           69 SPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARV-FFPSGAIGGLDVLSSIK---DFVKNVRIETIK  144 (253)
T ss_dssp             CHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEE-ECCCTTCCCHHHHHHHG---GGEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeE-EecCCcccchhHHHHhc---CCccEEEEEEeC
Confidence            9999999999999999999999887 3 5566789999999999884 45555555522223332   22234444433 


Q ss_pred             cCC--CCC--CC----chHHHHHHHHHHhcCCccccCccccccccccccccCCCeeEEEEEcCCCCe-eEEEEEccCCcE
Q 022250          192 RPN--ARD--FP----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPS-STTVYFSRPGEV  262 (300)
Q Consensus       192 Hh~--K~D--aP----SGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i~s~R~g~ivg-~H~V~f~~~~E~  262 (300)
                      |..  +.+  .|    +|||.   |++..++++.|..-...+  +-|-  +...+.+-+-  |++-+ .|+|...|++.+
T Consensus       145 ~P~~~~~~l~e~~~~feG~ar---eA~~~fP~N~NVaaa~aL--A~G~--d~t~v~l~aD--P~~~~n~H~I~v~g~~g~  215 (253)
T 1j5p_A          145 PPKSLGLDLKGKTVVFEGSVE---EASKLFPRNINVASTIGL--IVGF--EKVKVTIVAD--PAMDHNIHIVRISSAIGN  215 (253)
T ss_dssp             CGGGGTCCCSSCEEEEEECHH---HHHHHCSSSCHHHHHHHH--HHCG--GGEEEEEEEC--TTCSSCEEEEEEEESSCE
T ss_pred             ChHHhCcccccceEEEEEcHH---HHHHHcCccHHHHHHHHH--hcCC--CccEEEEEEc--CCCCCcEEEEEEEecCcE
Confidence            322  222  23    88998   444444432221100001  1110  0012223322  34433 699999999999


Q ss_pred             EEEEEE
Q 022250          263 YSIKHD  268 (300)
Q Consensus       263 iel~H~  268 (300)
                      ++++-+
T Consensus       216 ~~~~~~  221 (253)
T 1j5p_A          216 YEFKIE  221 (253)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            888644

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=99.35  E-value=8e-13  Score=124.43  Aligned_cols=140  Identities=16%  Similarity=0.102  Sum_probs=104.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC-------CcEEEEEEecCCC-Ccc---hhhhhcCcCCCCcc-eec---CHHHHHh
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSHSV-GED---IGMVCDMEQPLEIP-VMS---DLTMVLG   99 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-------~~eLvg~vd~~~~-g~d---~~~~~g~~~~~gv~-v~~---dl~~~l~   99 (300)
                      ++||+|+|+ |.||+.+++.+.+.+       +++|+++.|++.. ..+   ...+.....+.+++ +++   |++++++
T Consensus         6 ~irvgIiG~-G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~   84 (331)
T 3c8m_A            6 TINLSIFGL-GNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALA   84 (331)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHH
T ss_pred             EEeEEEEec-CHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhC
Confidence            499999998 999999999998766       6899999997531 011   11111000012443 566   9999984


Q ss_pred             cccccCCccEEEEcCCch----hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH
Q 022250          100 SISQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~----~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~  175 (300)
                           .++|+|||+|++.    .+.+++..|+++|||||+.......++.++|.++|+++++.+.+-++..-|..++..+
T Consensus        85 -----~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~giPii~~l  159 (331)
T 3c8m_A           85 -----RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGGVPLFSFI  159 (331)
T ss_dssp             -----SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHH
T ss_pred             -----CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeecccccHHHHHH
Confidence                 6899999999874    8899999999999999997544335678899999999999999988888886666555


Q ss_pred             HHHhc
Q 022250          176 AISAS  180 (300)
Q Consensus       176 a~~~~  180 (300)
                      -+.++
T Consensus       160 ~~~l~  164 (331)
T 3c8m_A          160 DYSVL  164 (331)
T ss_dssp             HHHST
T ss_pred             HHHhh
Confidence            55444

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=99.33  E-value=5.3e-12  Score=118.93  Aligned_cols=124  Identities=16%  Similarity=0.225  Sum_probs=99.8

Q ss_pred             cceEEEEcCCchHHHHHHHH--HHhcCCcEEEEEEecCCCC--cchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIA--VTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~--i~~~~~~eLvg~vd~~~~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      .+||.|.|++|||++.+++.  +.+.++.++|+.+++...|  +++.  .|. ...|+|+|++++++.++   ..++|++
T Consensus        10 ~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~--~G~-~~~Gvpvy~sv~ea~~~---~p~~Dla   83 (334)
T 3mwd_B           10 HTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFY--WGH-KEILIPVFKNMADAMRK---HPEVDVL   83 (334)
T ss_dssp             TCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEE--ETT-EEEEEEEESSHHHHHHH---CTTCCEE
T ss_pred             CCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccceEe--ccC-ccCCceeeCCHHHHhhc---CCCCcEE
Confidence            58999999999999888876  6667899999999986533  3431  232 34689999999998852   1158999


Q ss_pred             EEcCCchhHHHHHHHHHH-cCCCEEEe-CCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          111 IDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~-~G~~vVig-TTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      |+|++|..+.+.+..+++ +|++.|+. |+|+++++..+|.++|+++++. ++.||-
T Consensus        84 Vi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~r-liGPNc  139 (334)
T 3mwd_B           84 INFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVT-IIGPAT  139 (334)
T ss_dssp             EECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSSC
T ss_pred             EEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEccCC
Confidence            999999998887777776 99987777 7899998889999999999984 788983

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=99.21  E-value=4.3e-11  Score=113.79  Aligned_cols=166  Identities=16%  Similarity=0.150  Sum_probs=111.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCcCCC-CcceecCHHHHHhcc--------
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSI--------  101 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~~~~~g~~~~~-gv~v~~dl~~~l~~~--------  101 (300)
                      .++||+|+|+ |.||+.+++.+.+.+   +++|+++.|+..  .   .+.   .++ |++.++|++++++..        
T Consensus         3 k~i~vgIiG~-G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~---~~~---~~~~gi~~~~~~~e~l~~~~~~~~did   73 (358)
T 1ebf_A            3 KVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAER--S---LIS---KDFSPLNVGSDWKAALAASTTKTLPLD   73 (358)
T ss_dssp             SEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSB--E---EEC---SSCSCCSCTTCHHHHHHTCCCBCCCHH
T ss_pred             ceEEEEEEec-CHHHHHHHHHHHhcCCCCCEEEEEEEECCh--h---hhc---cccCCCCccccHHHHHhcccCCCCCHH
Confidence            3699999998 999999999998876   689999999642  1   111   233 555566777766420        


Q ss_pred             ------cccCCccEEEEcCCchhHHHHHHHHHHcCCCEEE--eCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250          102 ------SQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV--YVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (300)
Q Consensus       102 ------~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi--gTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll  172 (300)
                            .....+|||||+|....+.+....|+++|||||+  .++ ..+.++.++|. +|+++|+.+.|-++..-|.-++
T Consensus        74 ~v~e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~vg~giPii  152 (358)
T 1ebf_A           74 DLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEATVGAGLPII  152 (358)
T ss_dssp             HHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGGTTTTSSCH
T ss_pred             HHHHHhhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEccccccCCcHH
Confidence                  0001238999999877777777899999999999  455 56668889999 9999999888877666664444


Q ss_pred             HHHHHHhccCCCCeEEEEc----------cC-C---CCCCCchHHHHHHHHH
Q 022250          173 QQAAISASFHYKNVEIVES----------RP-N---ARDFPSPDATQIANNL  210 (300)
Q Consensus       173 ~~~a~~~~~~~~dieIiE~----------Hh-~---K~DaPSGTA~~l~~~i  210 (300)
                      ..+-+.+.. ...+.-++-          +. .   ....|--+|++-|+.+
T Consensus       153 ~~l~~~l~~-G~~I~~I~GIlnGT~nyil~~m~~~~~~g~~f~~~l~eAq~~  203 (358)
T 1ebf_A          153 SFLREIIQT-GDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKL  203 (358)
T ss_dssp             HHHHHHHHH-TCCEEEEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCeEEEEEEEeecceeeecccccccccCCCHHHHHHHHHHc
Confidence            444333311 123433333          22 1   4455666677666654

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=99.16  E-value=8.9e-11  Score=110.41  Aligned_cols=97  Identities=21%  Similarity=0.239  Sum_probs=76.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCc------------CCCCcceecCHHHHH
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME------------QPLEIPVMSDLTMVL   98 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g~~------------~~~gv~v~~dl~~~l   98 (300)
                      ||+||+|+|+ |+||+.+++.+.+.|+++|+++.|++.  +.+..++   |+.            ...++.++.|+++++
T Consensus         1 M~irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~~--~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~   77 (334)
T 2czc_A            1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKP--DFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL   77 (334)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSC--SHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred             CCcEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCCH--HHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence            5799999998 999999999999999999999999642  2222222   110            001235677899988


Q ss_pred             hcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250           99 GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      .      ++|+|+++|++..+.+.+..++++|++|++.++.
T Consensus        78 ~------~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi~sap~  112 (334)
T 2czc_A           78 E------KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGE  112 (334)
T ss_dssp             T------TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTS
T ss_pred             c------CCCEEEECCCccccHHHHHHHHHcCCceEeeccc
Confidence            3      7999999999999999999999999999988663

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=99.14  E-value=4.4e-10  Score=104.61  Aligned_cols=115  Identities=13%  Similarity=0.151  Sum_probs=94.7

Q ss_pred             ceEEEE-cCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~-Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.++|+ |++|++|+.+++.+.+ .+++++..+++...|..         -.|+++|.+++++.++    .++|++|.|+
T Consensus        14 ~siaVV~Gasg~~G~~~~~~l~~-~G~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~vD~avI~v   79 (305)
T 2fp4_A           14 NTKVICQGFTGKQGTFHSQQALE-YGTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIYV   79 (305)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHH-CCCcEEEEeCCCcCcce---------ECCeeeechHHHhhhc----CCCCEEEEec
Confidence            346777 9999999999998875 57888877876542211         2578999999999741    3799999999


Q ss_pred             CchhHHHHHHHHHHcCCCE-EEeCCCCCHHHHHHHHHHhhhC-CCeEEEcCCC
Q 022250          115 DASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKA-SMGCLIAPTL  165 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~v-VigTTG~~~e~~~~L~~~a~~~-~i~iv~a~N~  165 (300)
                      +|+.+.+.++.|++.|++. |+-++|++.++..++.++++++ ++. ++.||.
T Consensus        80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~-liGPnc  131 (305)
T 2fp4_A           80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR-LIGPNC  131 (305)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE-EECSSS
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE-EEeCCC
Confidence            9999999999999999998 6778899887778899999998 887 677885

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=99.08  E-value=9.1e-11  Score=110.50  Aligned_cols=124  Identities=14%  Similarity=0.131  Sum_probs=94.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC--------CcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      ++||+|+|+ |.||+.+++.+.+.+        +++|++++|++..  ....+     . ...+++|+++++       +
T Consensus         3 ~irvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~--~~~~~-----~-~~~~~~d~~~ll-------~   66 (332)
T 2ejw_A            3 ALKIALLGG-GTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR--KPRAI-----P-QELLRAEPFDLL-------E   66 (332)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT--SCCSS-----C-GGGEESSCCCCT-------T
T ss_pred             eeEEEEEcC-CHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH--Hhhcc-----C-cccccCCHHHHh-------C
Confidence            589999998 999999999998877        7899999997531  11111     0 124677888875       5


Q ss_pred             ccEEEEcCCch-hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250          107 RAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (300)
Q Consensus       107 ~DVVIDfT~p~-~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a  176 (300)
                      +|+||++|.+. .+.++++.|+++|||||+.......++.++|.++|+++  .+++.++..-|.-++..+-
T Consensus        67 iDvVve~t~~~~~a~~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~--~~~~Ea~vg~giPii~~l~  135 (332)
T 2ejw_A           67 ADLVVEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAWESLRPFAEEG--LIYHEASVMAGTPALSFLE  135 (332)
T ss_dssp             CSEEEECCCCSHHHHHHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT--CEECGGGTTTTSSSHHHHH
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC--CeEEEEEcccCCHHHHHHH
Confidence            89999999765 56889999999999999964433346788999999986  7888887777754444443

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=99.01  E-value=9.1e-10  Score=102.76  Aligned_cols=101  Identities=21%  Similarity=0.235  Sum_probs=77.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      +++||+|+|+ |.||+.+++.+.+ .+++++++++|++.. .+...++   ..+|++. +++++++++.- ...++|+|+
T Consensus         3 ~~irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~-~~~~~~a---~~~g~~~~~~~~e~ll~~~-~~~~iDvV~   76 (312)
T 1nvm_B            3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAA-SDGLARA---QRMGVTTTYAGVEGLIKLP-EFADIDFVF   76 (312)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTT-CHHHHHH---HHTTCCEESSHHHHHHHSG-GGGGEEEEE
T ss_pred             CCCEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChh-hhHHHHH---HHcCCCcccCCHHHHHhcc-CCCCCcEEE
Confidence            3699999997 9999999999866 899999999997531 1011222   2355553 56788887510 003689999


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          112 DFTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      ++|+++.+.+++..|+++  |++|++.++-+
T Consensus        77 ~atp~~~h~~~a~~al~a~~Gk~Vi~ekp~~  107 (312)
T 1nvm_B           77 DATSASAHVQNEALLRQAKPGIRLIDLTPAA  107 (312)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTTCEEEECSTTC
T ss_pred             ECCChHHHHHHHHHHHHhCCCCEEEEcCccc
Confidence            999999999999999999  99999999853

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.88  E-value=1.6e-08  Score=83.87  Aligned_cols=112  Identities=16%  Similarity=0.109  Sum_probs=88.6

Q ss_pred             ceEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .+|+|+|++   |+||..+++.+.+ .++++.. +++.  +   .+      -.|+++|.+++++.      ..+|++|.
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~-~G~~v~~-Vnp~--~---~~------i~G~~~y~sl~~l~------~~vDlvvi   83 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLE-HGYDVYP-VNPK--Y---EE------VLGRKCYPSVLDIP------DKIEVVDL   83 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHH-TTCEEEE-ECTT--C---SE------ETTEECBSSGGGCS------SCCSEEEE
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHH-CCCEEEE-ECCC--C---Ce------ECCeeccCCHHHcC------CCCCEEEE
Confidence            679999997   7999999998875 5787433 3332  1   11      24788999999885      47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l  171 (300)
                      |++++.+.+.++.|++.|++.++-++|...   +++.++++++|+. ++.|| ++|+..
T Consensus        84 ~vp~~~~~~vv~~~~~~gi~~i~~~~g~~~---~~l~~~a~~~Gi~-vvGpn-c~gv~~  137 (144)
T 2d59_A           84 FVKPKLTMEYVEQAIKKGAKVVWFQYNTYN---REASKKADEAGLI-IVANR-CMMREH  137 (144)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSEEEECTTCCC---HHHHHHHHHTTCE-EEESC-CHHHHH
T ss_pred             EeCHHHHHHHHHHHHHcCCCEEEECCCchH---HHHHHHHHHcCCE-EEcCC-chhhcc
Confidence            999999999999999999999988888652   4688889999998 56677 788654

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=98.87  E-value=6.9e-09  Score=97.90  Aligned_cols=134  Identities=15%  Similarity=0.194  Sum_probs=85.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc---------------CcCCCCcceecCHHHHHh
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD---------------MEQPLEIPVMSDLTMVLG   99 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g---------------~~~~~gv~v~~dl~~~l~   99 (300)
                      |+||+|+|+ |+||+.+++++.++|++||+++.|...  ......+.               + ...++++.++++++++
T Consensus         1 ~ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~--~~~~~~a~~~g~~~~~~~~~~~~~-~~~~v~v~~~~e~l~~   76 (340)
T 1b7g_O            1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSP--NYEAFIAHRRGIRIYVPQQSIKKF-EESGIPVAGTVEDLIK   76 (340)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSC--SHHHHHHHHTTCCEECCGGGHHHH-HTTTCCCCCCHHHHHH
T ss_pred             CeEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCCh--HHHHHHHHhcCcceecCcCHHHHh-cccccccccCHhHhhc
Confidence            589999999 999999999999999999999998642  11111110               0 1223444445556553


Q ss_pred             cccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHH---HHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE---TVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e---~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a  176 (300)
                            ++|+|+++|.+..+.+++..++++|+++|.-+.-+..+   .+-......+..+-.++  +|=|-..|-+..++
T Consensus        77 ------~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~~~~~iI--snpsCtt~~l~~~l  148 (340)
T 1b7g_O           77 ------TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALGKKYI--RVVSCNTTALLRTI  148 (340)
T ss_dssp             ------HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHHTTCSEE--EECCHHHHHHHHHH
T ss_pred             ------CCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHHcCCCCc--ccCCcHHHHHHHHH
Confidence                  68999999999999999999999999988654321110   00000111111122333  46677777666656


Q ss_pred             HHhc
Q 022250          177 ISAS  180 (300)
Q Consensus       177 ~~~~  180 (300)
                      +.+.
T Consensus       149 k~L~  152 (340)
T 1b7g_O          149 CTVN  152 (340)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=98.84  E-value=8.5e-09  Score=97.60  Aligned_cols=122  Identities=13%  Similarity=0.106  Sum_probs=96.4

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHH---Hhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAV---TKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i---~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (300)
                      ++..-|++|+|- |.||+..++..   ... +.+++||++ ++..|+|++++.+- ...++++++|++++++     ..+
T Consensus        19 ~~~~~~~vi~~~-g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g-~~~gipv~~d~~~al~-----~~~   90 (350)
T 2g0t_A           19 YQPGTPAAIVAW-GQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKP-VRYDVPVVSSVEKAKE-----MGA   90 (350)
T ss_dssp             SCTTEEEEEECT-TTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC--CCSCCBEESSHHHHHH-----TTC
T ss_pred             hCcCCCEEEEeC-CCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCC-CCCCceeeCCHHHHHh-----cCC
Confidence            334578999996 99999988855   555 679999999 88899999998832 2589999999999997     579


Q ss_pred             cEEEEcC------CchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEc
Q 022250          108 AVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (300)
Q Consensus       108 DVVIDfT------~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a  162 (300)
                      |++|..+      .|+...+.+..|+++|++||+|--.+ ..+..+|.++|+++|+.++-.
T Consensus        91 d~lvig~a~~gg~l~~~~~~~I~~Al~~G~nVvsglh~~-l~~~pel~~~A~~~Gv~i~dv  150 (350)
T 2g0t_A           91 EVLIIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGTRIIDI  150 (350)
T ss_dssp             CEEEECCCSCCHHHHHHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTCCEEES
T ss_pred             CEEEEEecCCCCCCCHHHHHHHHHHHHcCCcEEeCChhh-hhCCHHHHHHHHHCCCEEEEe
Confidence            9999765      34566789999999999999987654 234456888999887776654

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=98.84  E-value=8.7e-09  Score=97.08  Aligned_cols=96  Identities=20%  Similarity=0.228  Sum_probs=73.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc---------------CCCCcceecCHHHHHh
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME---------------QPLEIPVMSDLTMVLG   99 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~---------------~~~gv~v~~dl~~~l~   99 (300)
                      |+||+|+|+ |+||+.+++.+.++|+++|+++.|...  .....+++..               ...++.+..+.++++.
T Consensus         1 mikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~--~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~   77 (337)
T 1cf2_P            1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRP--DFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD   77 (337)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSC--SHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred             CeEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCCh--hHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc
Confidence            589999999 999999999999899999999988642  1111111100               0113334446777763


Q ss_pred             cccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                            ++|+|+++|++..+.+++..++++|++||+.++.
T Consensus        78 ------~vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp~  111 (337)
T 1cf2_P           78 ------EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (337)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCCEEECTTS
T ss_pred             ------CCCEEEECCCchhhHHHHHHHHHcCCEEEEecCC
Confidence                  7899999999999999999999999999888776

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.81  E-value=2.8e-09  Score=100.83  Aligned_cols=122  Identities=23%  Similarity=0.267  Sum_probs=85.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      +|||+|+|| |+||+.+++.+.+..++.   ++|...  +.+..+........+.+  .+++++++      .++|+||.
T Consensus        16 ~mkilvlGa-G~vG~~~~~~L~~~~~v~---~~~~~~--~~~~~~~~~~~~~~~d~~d~~~l~~~~------~~~DvVi~   83 (365)
T 3abi_A           16 HMKVLILGA-GNIGRAIAWDLKDEFDVY---IGDVNN--ENLEKVKEFATPLKVDASNFDKLVEVM------KEFELVIG   83 (365)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTTSEEE---EEESCH--HHHHHHTTTSEEEECCTTCHHHHHHHH------TTCSEEEE
T ss_pred             ccEEEEECC-CHHHHHHHHHHhcCCCeE---EEEcCH--HHHHHHhccCCcEEEecCCHHHHHHHH------hCCCEEEE
Confidence            589999999 999999999987654433   334321  11111110000111111  22445555      47899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      ..+|..+...++.|+++|+|+|- ++ +..++..+|.+.|+++|+.++...-|..|+.
T Consensus        84 ~~p~~~~~~v~~~~~~~g~~yvD-~s-~~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~  139 (365)
T 3abi_A           84 ALPGFLGFKSIKAAIKSKVDMVD-VS-FMPENPLELRDEAEKAQVTIVFDAGFAPGLS  139 (365)
T ss_dssp             CCCGGGHHHHHHHHHHHTCEEEE-CC-CCSSCGGGGHHHHHHTTCEEECCCBTTTBHH
T ss_pred             ecCCcccchHHHHHHhcCcceEe-ee-ccchhhhhhhhhhccCCceeeecCCCCCchH
Confidence            99999999999999999999996 33 3334556789999999999999999999975

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.81  E-value=3.7e-08  Score=81.20  Aligned_cols=112  Identities=15%  Similarity=0.191  Sum_probs=86.7

Q ss_pred             cceEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      +.+|+|+|++   |+||+.+++.+.+ .++++. .+++..     .+      -.|+++|.|++++.      .++|++|
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~-~G~~V~-~vnp~~-----~~------i~G~~~~~s~~el~------~~vDlvi   74 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLS-KGFEVL-PVNPNY-----DE------IEGLKCYRSVRELP------KDVDVIV   74 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHH-TTCEEE-EECTTC-----SE------ETTEECBSSGGGSC------TTCCEEE
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHH-CCCEEE-EeCCCC-----Ce------ECCeeecCCHHHhC------CCCCEEE
Confidence            4789999976   9999999999875 578833 344431     11      24788999999886      3799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      -+.+++.+.+.++.|++.|++.++-.++-.   .+++.++++++|+. ++.|| ++|+.
T Consensus        75 i~vp~~~v~~v~~~~~~~g~~~i~~~~~~~---~~~l~~~a~~~Gi~-~igpn-c~g~~  128 (138)
T 1y81_A           75 FVVPPKVGLQVAKEAVEAGFKKLWFQPGAE---SEEIRRFLEKAGVE-YSFGR-CIMVE  128 (138)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCEEEECTTSC---CHHHHHHHHHHTCE-EECSC-CHHHH
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEEcCccH---HHHHHHHHHHCCCE-EEcCC-cceEE
Confidence            999999999999999999998877766432   24678888898988 56777 78864

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=98.74  E-value=2.6e-08  Score=103.37  Aligned_cols=122  Identities=16%  Similarity=0.227  Sum_probs=96.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-----~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      .+||.|.|++||   .+.+++...     ++..+|+.+++...|.+...+.|. .+.|+|+|.+++++.+.   ..++|+
T Consensus       496 ~trviV~G~tg~---~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~-~~~Gvp~y~sv~ea~~~---~p~~Dl  568 (829)
T 3pff_A          496 HTKAIVWGMQTR---AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGH-KEILIPVFKNMADAMRK---HPEVDV  568 (829)
T ss_dssp             TCCEEEESCCHH---HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETT-EEEEEEEESSHHHHHHH---CTTCCE
T ss_pred             CCeEEEECCcHH---HHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecC-CcCCcccCCcHHHHhhc---cCCCcE
Confidence            589999999977   555555433     678999999987654444333343 35689999999999851   015899


Q ss_pred             EEEcCCchhHHHHHHHHHH-cCCCEEEe-CCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          110 VIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~-~G~~vVig-TTG~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      +|.|.++..+.+.++.|++ .|++.++. |.||.+.+..+|.++|+++++. ++.||
T Consensus       569 aVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A~~~g~r-liGPN  624 (829)
T 3pff_A          569 LINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVT-IIGPA  624 (829)
T ss_dssp             EEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred             EEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCE-EEcCC
Confidence            9999999999999999999 99996655 6699988788999999999984 88898

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.73  E-value=4.2e-08  Score=81.46  Aligned_cols=112  Identities=12%  Similarity=0.146  Sum_probs=83.8

Q ss_pred             ceEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .+|+|+|++   |+||..+++.+.+ .+++ +..+++...|..         -.|+++|.|++++.      ..+|++|-
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~-~G~~-v~~vnp~~~g~~---------i~G~~~~~sl~el~------~~~Dlvii   76 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLD-QGYH-VIPVSPKVAGKT---------LLGQQGYATLADVP------EKVDMVDV   76 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHH-HTCC-EEEECSSSTTSE---------ETTEECCSSTTTCS------SCCSEEEC
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHH-CCCE-EEEeCCcccccc---------cCCeeccCCHHHcC------CCCCEEEE
Confidence            679999987   8999999999875 4677 334555432121         24788999998875      47899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      +++++.+.+.+..|++.|+..|+-.++-.   .+++.++++++|+. ++.|| ++|+
T Consensus        77 ~vp~~~v~~v~~~~~~~g~~~i~i~~~~~---~~~l~~~a~~~Gi~-~igpn-c~g~  128 (145)
T 2duw_A           77 FRNSEAAWGVAQEAIAIGAKTLWLQLGVI---NEQAAVLAREAGLS-VVMDR-CPAI  128 (145)
T ss_dssp             CSCSTHHHHHHHHHHHHTCCEEECCTTCC---CHHHHHHHHTTTCE-EECSC-CHHH
T ss_pred             EeCHHHHHHHHHHHHHcCCCEEEEcCChH---HHHHHHHHHHcCCE-EEcCC-eeeE
Confidence            99999999999999999976555445422   24678889999887 55677 8885

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.71  E-value=5.1e-08  Score=80.54  Aligned_cols=114  Identities=13%  Similarity=0.118  Sum_probs=88.5

Q ss_pred             ceEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -+|+|+|++   |+||..+++.+.+ .++++. -+++...+.   +      -.|+++|.+++++-      ..+|++|.
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~-~G~~v~-~vnp~~~~~---~------i~G~~~~~sl~el~------~~vDlavi   76 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLRE-QGYRVL-PVNPRFQGE---E------LFGEEAVASLLDLK------EPVDILDV   76 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHH-TTCEEE-EECGGGTTS---E------ETTEECBSSGGGCC------SCCSEEEE
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHH-CCCEEE-EeCCCcccC---c------CCCEEecCCHHHCC------CCCCEEEE
Confidence            679999997   8999999999774 578733 344431121   1      24789999999885      47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l  171 (300)
                      |.+++.+.+.++.|.+.|+..++-.+|+..   +++.++|+++|+. ++.|| ++|+..
T Consensus        77 ~vp~~~~~~v~~~~~~~gi~~i~~~~g~~~---~~~~~~a~~~Gir-~vgpn-c~g~~~  130 (140)
T 1iuk_A           77 FRPPSALMDHLPEVLALRPGLVWLQSGIRH---PEFEKALKEAGIP-VVADR-CLMVEH  130 (140)
T ss_dssp             CSCHHHHTTTHHHHHHHCCSCEEECTTCCC---HHHHHHHHHTTCC-EEESC-CHHHHH
T ss_pred             EeCHHHHHHHHHHHHHcCCCEEEEcCCcCH---HHHHHHHHHcCCE-EEcCC-ccceEC
Confidence            999999999999999999988887887653   5688889999988 45677 888653

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=98.70  E-value=2.2e-08  Score=94.62  Aligned_cols=116  Identities=13%  Similarity=0.082  Sum_probs=96.6

Q ss_pred             ceEEEEcCCchHHHHHHHHH---HhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAV---TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i---~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -|++|.+- |.+|+..+|..   ...+++++||++|++..|+|++++.|.  +.++|++.|++++++     .++|++|.
T Consensus         8 ~~~vi~~~-g~~~~~~aKta~gl~r~~~~~iVgvid~~~~G~d~ge~~g~--~~gipi~~~l~~al~-----~~~d~lvi   79 (349)
T 2obn_A            8 QRVAILLH-EGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGI--YRYVPIVKSVEAALE-----YKPQVLVI   79 (349)
T ss_dssp             CCEEEECT-TTSSSSSCHHHHHHHHHCCSCEEEEECGGGTTSCHHHHHCC--CSCCCEESSHHHHGG-----GCCSEEEE
T ss_pred             CcEEEEeC-CCCCcHHHHHhHHhhhcCCCcEEEEEeCCCCCCcHHHhcCC--cCCCCccCCHHHHHh-----CCCCEEEE
Confidence            57999985 99998888877   777889999999999999999999996  689999999999996     58999998


Q ss_pred             cC------CchhHHHHHHHHHHcCCCEEEeCCC-CCHHHHHHHHHHhhhCCCeEEEc
Q 022250          113 FT------DASTVYDNVKQATAFGMRSVVYVPH-IQLETVSALSAFCDKASMGCLIA  162 (300)
Q Consensus       113 fT------~p~~~~~~~~~al~~G~~vVigTTG-~~~e~~~~L~~~a~~~~i~iv~a  162 (300)
                      -+      .|+...+.+..|+++|++||.|--. +++  ..+|.++|++ |+.++=.
T Consensus        80 g~a~~gG~l~~~~~~~i~~Al~~G~~Vvsglh~~l~~--~pel~~~A~~-g~~i~dv  133 (349)
T 2obn_A           80 GIAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPLAN--IPDLNALLQP-GQLIWDV  133 (349)
T ss_dssp             CCCCCCC-SCGGGHHHHHHHHHTTCEEEECSSSCCTT--CHHHHHHCCT-TCCEEET
T ss_pred             EecCCCCCCCHHHHHHHHHHHHcCCcEEeCccchhhC--CHHHHHHHHc-CCEEEEe
Confidence            75      3677789999999999999998763 332  2348888988 7766643

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.69  E-value=5.8e-08  Score=93.36  Aligned_cols=147  Identities=9%  Similarity=0.115  Sum_probs=96.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhc-CcC----CC-----CcceecCHHHHHhcccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCD-MEQ----PL-----EIPVMSDLTMVLGSISQ  103 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g-~~~----~~-----gv~v~~dl~~~l~~~~~  103 (300)
                      |+||+|+|+ |.+|+.+++.+.+.++. ..+.+++++.  ..+..++. +..    ..     ++.-.++++++++.   
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~--~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~---   74 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTL--SKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE---   74 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCH--HHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH---
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCH--HHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh---
Confidence            579999999 99999999999987765 4455667542  11111110 000    00     11112456677751   


Q ss_pred             cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH
Q 022250          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI--------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~--------~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~  175 (300)
                       .++|+||.++.|....+.+..|+++|+++|. ++++        .-.+..++.+.++++|+.++..++|..|...+  +
T Consensus        75 -~~~DvVin~ag~~~~~~v~~a~l~~g~~vvD-~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~~PG~~~l--~  150 (405)
T 4ina_A           75 -VKPQIVLNIALPYQDLTIMEACLRTGVPYLD-TANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGFDPGVTNV--F  150 (405)
T ss_dssp             -HCCSEEEECSCGGGHHHHHHHHHHHTCCEEE-SSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBTTTBHHHH--H
T ss_pred             -hCCCEEEECCCcccChHHHHHHHHhCCCEEE-ecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCCCCccHHHH--H
Confidence             2489999999998889999999999999985 3332        12233578888999999999999999997533  2


Q ss_pred             HHHhcc-CCCCeEEEEc
Q 022250          176 AISASF-HYKNVEIVES  191 (300)
Q Consensus       176 a~~~~~-~~~dieIiE~  191 (300)
                      +..+++ .+.+++.++.
T Consensus       151 a~~~~~~~~~~i~~i~i  167 (405)
T 4ina_A          151 CAYAQKHYFDEIHEIDI  167 (405)
T ss_dssp             HHHHHHHTCSEEEEEEE
T ss_pred             HHHHHHhccCcccEEEE
Confidence            222222 2445555554

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=98.66  E-value=3.8e-08  Score=94.23  Aligned_cols=121  Identities=9%  Similarity=0.032  Sum_probs=82.0

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCC-cEEEEE-EecCCCCcchhhhh---cCc-----------------CCCCcce
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGA-IDSHSVGEDIGMVC---DME-----------------QPLEIPV   90 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~-vd~~~~g~d~~~~~---g~~-----------------~~~gv~v   90 (300)
                      ++|+||+|+|+||.||+.+++.+.+.|+ ++++++ .+++.  ..+.+.+   +..                 ...++.+
T Consensus         2 ~~m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni--~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v   79 (388)
T 1r0k_A            2 SQPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNV--KDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEA   79 (388)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCH--HHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEE
T ss_pred             CCceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCH--HHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEE
Confidence            3469999999999999999999999887 999987 43321  0000000   000                 0011222


Q ss_pred             ---ecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250           91 ---MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus        91 ---~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                         .++++++++    .. +|+||+.+.-.+..+....|+++||+|++..-......-+.|.++|+++|+.++
T Consensus        80 ~~g~~~~~el~~----~~-iDvVV~ai~G~aGl~ptlaAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~li  147 (388)
T 1r0k_A           80 AAGADALVEAAM----MG-ADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLL  147 (388)
T ss_dssp             EESHHHHHHHHT----SC-CSEEEECCCSGGGHHHHHHHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEEE
T ss_pred             EeCccHHHHHHc----CC-CCEEEEeCCCHHHHHHHHHHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEEE
Confidence               133445554    34 899999997777889999999999999997433323345678889999887764

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=98.63  E-value=1.6e-07  Score=88.77  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCcC-------CCCcceec-CHHHHHhccccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQ-------PLEIPVMS-DLTMVLGSISQS  104 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~~~~~g~~~-------~~gv~v~~-dl~~~l~~~~~~  104 (300)
                      +|+||+|+|++|++|+.+++.+.++|++||+++.+ ....|+...+..+...       ...+.+.+ +.++ +      
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~------   75 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-H------   75 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-G------
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-h------
Confidence            46999999999999999999999999999999884 3334444432221100       00122221 3332 3      


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      .++|+|+.++....+.+.+..++++|++||.-+..
T Consensus        76 ~~vDvVf~atp~~~s~~~a~~~~~aG~~VId~s~~  110 (350)
T 2ep5_A           76 KDVDVVLSALPNELAESIELELVKNGKIVVSNASP  110 (350)
T ss_dssp             TTCSEEEECCCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred             cCCCEEEECCChHHHHHHHHHHHHCCCEEEECCcc
Confidence            37899998888888999999999999998876644

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=98.62  E-value=1.3e-07  Score=89.33  Aligned_cols=98  Identities=12%  Similarity=0.049  Sum_probs=71.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC-CCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+||+|+|++|++|+.+++.+.++|++||+++.+....|+...+..+.-.. ..+.+ .++++ +      .++|+|+.+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~-~~~~~-~------~~vDvV~~a   75 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKF-VPPEK-L------EPADILVLA   75 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBC-BCGGG-C------CCCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccc-cchhH-h------cCCCEEEEc
Confidence            689999999999999999999999999999988865555554432211000 11222 23432 3      379999988


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      +....+.+.+..++++|+.+|.-+..|
T Consensus        76 ~g~~~s~~~a~~~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           76 LPHGVFAREFDRYSALAPVLVDLSADF  102 (345)
T ss_dssp             CCTTHHHHTHHHHHTTCSEEEECSSTT
T ss_pred             CCcHHHHHHHHHHHHCCCEEEEcCccc
Confidence            888888999999999999988655533

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=98.61  E-value=1.4e-07  Score=89.24  Aligned_cols=99  Identities=16%  Similarity=0.098  Sum_probs=70.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCcCC-------CCccee-cCHHHHHhccccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQP-------LEIPVM-SDLTMVLGSISQS  104 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~~~~~g~~~~-------~gv~v~-~dl~~~l~~~~~~  104 (300)
                      ||+||+|+|++|++|+.+++.+.++|+++|+++.+ +...|+...+..+...+       ..+.+. .|++++++     
T Consensus         7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   81 (354)
T 1ys4_A            7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-----   81 (354)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG-----
T ss_pred             ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc-----
Confidence            56899999999999999999999899999999885 33445554433221000       011121 24444432     


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      .++|+|+.++....+.+.+..++++|+.||.-+
T Consensus        82 ~~~DvV~~atp~~~~~~~a~~~~~aG~~VId~s  114 (354)
T 1ys4_A           82 EDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNA  114 (354)
T ss_dssp             TTCCEEEECCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CCCCEEEECCCchHHHHHHHHHHHCCCEEEECC
Confidence            278999988888889999999999999977544

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=98.61  E-value=9.1e-08  Score=77.46  Aligned_cols=110  Identities=13%  Similarity=0.163  Sum_probs=87.9

Q ss_pred             ceEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -+|+|+|++   ++.|..+.+.+.+. ++++.. +++..     .+      -.|.+.|.+++++-      . +|+++.
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~-g~~V~p-VnP~~-----~~------i~G~~~y~sl~dlp------~-vDlavi   64 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSH-GHEFIP-VGRKK-----GE------VLGKTIINERPVIE------G-VDTVTL   64 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHH-TCCEEE-ESSSC-----SE------ETTEECBCSCCCCT------T-CCEEEE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHC-CCeEEE-ECCCC-----Cc------CCCeeccCChHHCC------C-CCEEEE
Confidence            569999997   67999999998764 677665 44331     22      24678898888773      5 999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l  171 (300)
                      |++|+.+.+.++.|.+.|+..|+-++|+..   +++.++|+++|+.++  +| ++|+.+
T Consensus        65 ~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~---~e~~~~a~~~Girvv--~n-C~gv~l  117 (122)
T 3ff4_A           65 YINPQNQLSEYNYILSLKPKRVIFNPGTEN---EELEEILSENGIEPV--IG-CTLVML  117 (122)
T ss_dssp             CSCHHHHGGGHHHHHHHCCSEEEECTTCCC---HHHHHHHHHTTCEEE--ES-CHHHHH
T ss_pred             EeCHHHHHHHHHHHHhcCCCEEEECCCCCh---HHHHHHHHHcCCeEE--CC-cCeEEe
Confidence            999999999999999999999998899854   468888999999977  46 888754

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=98.61  E-value=8.6e-08  Score=84.63  Aligned_cols=93  Identities=14%  Similarity=0.169  Sum_probs=70.4

Q ss_pred             cceEEEEcCCchHHHHHHHHH-HhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i-~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ..||+|+|+ |++|+.+++.+ ... +++++|++|.++  ...+..+     .++++  +++++++++    + ++|+||
T Consensus        80 ~~rV~IIGa-G~~G~~la~~~~~~~-g~~iVg~~D~dp--~k~g~~i-----~gv~V~~~~dl~ell~----~-~ID~Vi  145 (211)
T 2dt5_A           80 KWGLCIVGM-GRLGSALADYPGFGE-SFELRGFFDVDP--EKVGRPV-----RGGVIEHVDLLPQRVP----G-RIEIAL  145 (211)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCS-SEEEEEEEESCT--TTTTCEE-----TTEEEEEGGGHHHHST----T-TCCEEE
T ss_pred             CCEEEEECc-cHHHHHHHHhHhhcC-CcEEEEEEeCCH--HHHhhhh-----cCCeeecHHhHHHHHH----c-CCCEEE
Confidence            489999998 99999999963 334 899999999653  1122211     23444  678888885    4 799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEE-EeCC-CCC
Q 022250          112 DFTDASTVYDNVKQATAFGMRSV-VYVP-HIQ  141 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vV-igTT-G~~  141 (300)
                      .+++...+.+.+..++++|++.| ..|| .++
T Consensus       146 IA~Ps~~~~ei~~~l~~aGi~~Ilnf~P~~l~  177 (211)
T 2dt5_A          146 LTVPREAAQKAADLLVAAGIKGILNFAPVVLE  177 (211)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECSSSCCC
T ss_pred             EeCCchhHHHHHHHHHHcCCCEEEECCccccc
Confidence            88888888999999999999955 5576 454

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=98.56  E-value=1.2e-07  Score=89.42  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=69.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhh------hcCcC--------C--C-----Cccee
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMV------CDMEQ--------P--L-----EIPVM   91 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~~~~------~g~~~--------~--~-----gv~v~   91 (300)
                      ||+||+|+|+ |+||+.+++++.++|++||+++.|+ ... ...+.+      .|.-.        .  .     .++++
T Consensus         2 m~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~-~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~   79 (337)
T 3e5r_O            2 GKIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITT-DYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVF   79 (337)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCH-HHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEE
T ss_pred             CceEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCH-HHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEE
Confidence            4589999999 9999999999999999999999884 110 000111      01000        0  0     12234


Q ss_pred             c--CHHHH-HhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCCC
Q 022250           92 S--DLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (300)
Q Consensus        92 ~--dl~~~-l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTTG  139 (300)
                      .  |++++ ..    +.++|+|+++|....+.+.+..++++|++ +||..++
T Consensus        80 ~~~dp~~l~w~----~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa  127 (337)
T 3e5r_O           80 GIRNPDEIPWA----EAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS  127 (337)
T ss_dssp             CCSCGGGCCHH----HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             ecCChHHcccc----ccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCC
Confidence            2  66654 11    13789999999999999999999999985 7777653

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=98.52  E-value=1e-07  Score=89.98  Aligned_cols=97  Identities=20%  Similarity=0.250  Sum_probs=66.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--------cC---c------CCCCcceecCHHH
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--------DM---E------QPLEIPVMSDLTM   96 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--------g~---~------~~~gv~v~~dl~~   96 (300)
                      ||+||+|+|+ |++|+.+++++.++++++|+++.|...  .....++        |.   .      ...++.+..+.++
T Consensus         1 MmikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~~--~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~   77 (343)
T 2yyy_A            1 MPAKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTKP--DFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILD   77 (343)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESSC--SHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred             CceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCH--HHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHH
Confidence            5789999999 999999999999889999999988431  1100000        00   0      0012223334444


Q ss_pred             HHhcccccCCccEEEEcCCchhHHHHHH-HHHHcCCCEEEeCCC
Q 022250           97 VLGSISQSKARAVVIDFTDASTVYDNVK-QATAFGMRSVVYVPH  139 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~-~al~~G~~vVigTTG  139 (300)
                      ++      .++|+|+++|....+.+.+. .++++|++||+..+.
T Consensus        78 ~~------~~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap~  115 (343)
T 2yyy_A           78 II------EDADIVVDGAPKKIGKQNLENIYKPHKVKAILQGGE  115 (343)
T ss_dssp             TG------GGCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTTS
T ss_pred             hc------cCCCEEEECCCccccHHHHHHHHHHCCCEEEECCCc
Confidence            44      37899998887787788996 999999998875543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.51  E-value=2.4e-07  Score=82.07  Aligned_cols=93  Identities=23%  Similarity=0.334  Sum_probs=65.1

Q ss_pred             cceEEEEcCCchHHHHHHHH-HHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIA-VTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~-i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ..||+|+|+ |++|+.+++. ....++++++|++|.++  ..++..+     .++++  +++++++++     .. |++|
T Consensus        85 ~~rV~IIGA-G~~G~~La~~~~~~~~g~~iVg~~D~dp--~k~g~~i-----~gv~V~~~~dl~eli~-----~~-D~Vi  150 (215)
T 2vt3_A           85 MTDVILIGV-GNLGTAFLHYNFTKNNNTKISMAFDINE--SKIGTEV-----GGVPVYNLDDLEQHVK-----DE-SVAI  150 (215)
T ss_dssp             --CEEEECC-SHHHHHHHHCC------CCEEEEEESCT--TTTTCEE-----TTEEEEEGGGHHHHCS-----SC-CEEE
T ss_pred             CCEEEEEcc-CHHHHHHHHHHhcccCCcEEEEEEeCCH--HHHHhHh-----cCCeeechhhHHHHHH-----hC-CEEE
Confidence            478999998 9999999995 34467899999999653  1222211     23443  578889885     34 9999


Q ss_pred             EcCCchhHHHHHHHHHHcCCC-EEEeCC-CCC
Q 022250          112 DFTDASTVYDNVKQATAFGMR-SVVYVP-HIQ  141 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~-vVigTT-G~~  141 (300)
                      .+++...+.+.+..++++|++ ++..|| -++
T Consensus       151 IAvPs~~~~ei~~~l~~aGi~~Ilnf~P~~l~  182 (215)
T 2vt3_A          151 LTVPAVAAQSITDRLVALGIKGILNFTPARLN  182 (215)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCEEEECSSCCCC
T ss_pred             EecCchhHHHHHHHHHHcCCCEEEEcCceecc
Confidence            888888889999999999999 666776 344

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=98.48  E-value=1.9e-07  Score=87.90  Aligned_cols=100  Identities=19%  Similarity=0.257  Sum_probs=66.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-CCCCcch---------hhhhcCc---------CCCCccee--c
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDI---------GMVCDME---------QPLEIPVM--S   92 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~---------~~~~g~~---------~~~gv~v~--~   92 (300)
                      ||+||+|+|+ |++|+.+++.+.++|++||+++.|+ ...+.-+         +.+.|..         ....++++  .
T Consensus         2 M~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~   80 (335)
T 1u8f_O            2 GKVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQER   80 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecC
Confidence            5689999998 9999999999999999999999884 2111000         0000000         00012233  3


Q ss_pred             CHHHH-HhcccccCCccEEEEcCCchhHHHHHHHHHHcC-CCEEEeCC
Q 022250           93 DLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (300)
Q Consensus        93 dl~~~-l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigTT  138 (300)
                      |++++ ..    +.++|+|+++|....+.+.+..++++| +.|++..+
T Consensus        81 d~~~l~~~----~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           81 DPSKIKWG----DAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             SGGGCCTT----TTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC
T ss_pred             CHHHCccc----cCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccC
Confidence            56655 21    147899999999999999999999999 55555543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=98.47  E-value=2.7e-07  Score=87.55  Aligned_cols=97  Identities=12%  Similarity=0.105  Sum_probs=69.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcC-C--CCcceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-P--LEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~-~--~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ++||+|+|++|++|+.+++.+.++|+++|+++.+....|+...+..+.-. .  ..+.+ .+ ++.+      .++|+|+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~------~~vDvVf   87 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADF------STVDAVF   87 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCG------GGCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCccccccee-cc-hhHh------cCCCEEE
Confidence            48999999999999999999999999999998886555554443221100 0  11112 12 3333      3689999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      .++....+.+.+..+ ++|+.+|.-+..|
T Consensus        88 ~atp~~~s~~~a~~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           88 CCLPHGTTQEIIKEL-PTALKIVDLSADF  115 (359)
T ss_dssp             ECCCTTTHHHHHHTS-CTTCEEEECSSTT
T ss_pred             EcCCchhHHHHHHHH-hCCCEEEECCccc
Confidence            888888899999999 9999877655544

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=98.46  E-value=8.7e-07  Score=83.47  Aligned_cols=100  Identities=19%  Similarity=0.153  Sum_probs=75.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhc-CcCCCCcceec--CHHHHHhcccccCCcc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCD-MEQPLEIPVMS--DLTMVLGSISQSKARA  108 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g-~~~~~gv~v~~--dl~~~l~~~~~~~~~D  108 (300)
                      |+||+|+|+||.+|+.+++.+.++|+++|+.+..+.   ..|+...+... ........+.+  +.++++      .++|
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~------~~~D   77 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFS------PGVD   77 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTC------TTCS
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHh------cCCC
Confidence            699999999999999999999999999999998876   67776654321 00111333333  444443      3789


Q ss_pred             EEEEcCCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      +|+.+++.....+.+..++++|+.+|.-+..|
T Consensus        78 vvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           78 VVFLATAHEVSHDLAPQFLEAGCVVFDLSGAF  109 (337)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             EEEECCChHHHHHHHHHHHHCCCEEEEcCCcc
Confidence            99977777777999999999999999776654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.39  E-value=5.2e-07  Score=80.61  Aligned_cols=98  Identities=15%  Similarity=0.166  Sum_probs=67.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      +||||+|+|+ |+||+.+++.+.+. +.+ |.++|++.  ..+..+.   ..+|+.+++|++++++      ++|+||.+
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~-g~~-v~~~~~~~--~~~~~~~---~~~g~~~~~~~~~~~~------~~D~Vi~~   67 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQT-PHE-LIISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVILG   67 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTS-SCE-EEEECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEEC
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhC-CCe-EEEECCCH--HHHHHHH---HHcCCEeeCCHHHHHh------cCCEEEEE
Confidence            4579999997 99999999988754 454 56777642  2222222   1235667889999884      78999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHH
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSA  147 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~  147 (300)
                      ++|..+.+.+... +.|+ +|+.++ |.+.+++++
T Consensus        68 v~~~~~~~v~~~l-~~~~-~vv~~~~~~~~~~l~~  100 (259)
T 2ahr_A           68 IKPQLFETVLKPL-HFKQ-PIISMAAGISLQRLAT  100 (259)
T ss_dssp             SCGGGHHHHHTTS-CCCS-CEEECCTTCCHHHHHH
T ss_pred             eCcHhHHHHHHHh-ccCC-EEEEeCCCCCHHHHHH
Confidence            9888777766543 4666 555554 788765433

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.36  E-value=1.5e-06  Score=80.37  Aligned_cols=129  Identities=17%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             cccCcccccccceeeEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCcCCCCcc
Q 022250           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIP   89 (300)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv~   89 (300)
                      |.||-++-.+-++.-.+..+   .|+||+|+|+ |.||+.+++.+.+. ++ ++. ++|++........+    .+.|+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~---~~~~I~iIG~-G~mG~~~A~~L~~~-G~~~V~-~~dr~~~~~~~~~~----~~~g~~   72 (312)
T 3qsg_A            3 HHHHHSSGVDLGTENLYFQS---NAMKLGFIGF-GEAASAIASGLRQA-GAIDMA-AYDAASAESWRPRA----EELGVS   72 (312)
T ss_dssp             -------------------------CEEEEECC-SHHHHHHHHHHHHH-SCCEEE-EECSSCHHHHHHHH----HHTTCE
T ss_pred             cccccccccccCcccccccC---CCCEEEEECc-cHHHHHHHHHHHHC-CCCeEE-EEcCCCCHHHHHHH----HHCCCE
Confidence            45666666666666555432   2589999997 99999999998764 66 554 57764100111112    235677


Q ss_pred             eecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHHhhhC
Q 022250           90 VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKA  155 (300)
Q Consensus        90 v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~a~~~  155 (300)
                      .+++++++++      ++|+||.+.++....+.+....+.  .-.+|+-++...+....++.+..++.
T Consensus        73 ~~~~~~e~~~------~aDvVi~~vp~~~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           73 CKASVAEVAG------ECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH  134 (312)
T ss_dssp             ECSCHHHHHH------HCSEEEECSCTTTHHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHh------cCCEEEEecCchhHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence            7889999885      689999888887777766555443  22366655555566656666665554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.35  E-value=4.1e-06  Score=64.76  Aligned_cols=105  Identities=15%  Similarity=0.158  Sum_probs=70.2

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-------cCHHHHHhcccccCC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-------SDLTMVLGSISQSKA  106 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-------~dl~~~l~~~~~~~~  106 (300)
                      |++||+|+|+ |.||+.+++.+.+....+++. ++++.  .....+.    ..++...       +++++++      .+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~-~~r~~--~~~~~~~----~~~~~~~~~d~~~~~~~~~~~------~~   69 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTV-ADHDL--AALAVLN----RMGVATKQVDAKDEAGLAKAL------GG   69 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEE-EESCH--HHHHHHH----TTTCEEEECCTTCHHHHHHHT------TT
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEE-EeCCH--HHHHHHH----hCCCcEEEecCCCHHHHHHHH------cC
Confidence            4689999999 999999999988654377654 55432  1112221    1222211       2344444      47


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhh
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~  154 (300)
                      +|+||+++.+......+..|.+.|++.+.-++  +.+..+.+.+++++
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~  115 (118)
T 3ic5_A           70 FDAVISAAPFFLTPIIAKAAKAAGAHYFDLTE--DVAATNAVRALVED  115 (118)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEECCCS--CHHHHHHHHHHHHC
T ss_pred             CCEEEECCCchhhHHHHHHHHHhCCCEEEecC--cHHHHHHHHHHHHh
Confidence            89999999888889999999999999886443  23345566666654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.34  E-value=6e-07  Score=78.85  Aligned_cols=129  Identities=19%  Similarity=0.045  Sum_probs=75.6

Q ss_pred             eeEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccc
Q 022250           24 FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ  103 (300)
Q Consensus        24 ~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~  103 (300)
                      +-.|.....++|+||+|+|+ |+||+.+++.+.+ .+++++.++|++.  ..+..+.   ..+++..+.+..+.+     
T Consensus        12 ~~~~~~~~~m~mmkI~IIG~-G~mG~~la~~l~~-~g~~V~~v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~-----   79 (220)
T 4huj_A           12 DLGTENLYFQSMTTYAIIGA-GAIGSALAERFTA-AQIPAIIANSRGP--ASLSSVT---DRFGASVKAVELKDA-----   79 (220)
T ss_dssp             -----CTTGGGSCCEEEEEC-HHHHHHHHHHHHH-TTCCEEEECTTCG--GGGHHHH---HHHTTTEEECCHHHH-----
T ss_pred             cccccchhhhcCCEEEEECC-CHHHHHHHHHHHh-CCCEEEEEECCCH--HHHHHHH---HHhCCCcccChHHHH-----
Confidence            34455555555789999997 9999999999875 4778877677653  2222222   123444444444555     


Q ss_pred             cCCccEEEEcCCchhHHHHHHHHHH-cCCCEEEeCCCCC-----HH------HHHHHHHHhhhCCCeEEEc-CCCcH
Q 022250          104 SKARAVVIDFTDASTVYDNVKQATA-FGMRSVVYVPHIQ-----LE------TVSALSAFCDKASMGCLIA-PTLSI  167 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~-~G~~vVigTTG~~-----~e------~~~~L~~~a~~~~i~iv~a-~N~Si  167 (300)
                       .++|+||.+++|..+.+.+..... .++.+|.-+.|+.     .+      ..+.|.+....  .+++.+ ||+..
T Consensus        80 -~~aDvVilavp~~~~~~v~~~l~~~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~  153 (220)
T 4huj_A           80 -LQADVVILAVPYDSIADIVTQVSDWGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPG--AKVVKAFNTLPA  153 (220)
T ss_dssp             -TTSSEEEEESCGGGHHHHHTTCSCCTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTT--CEEEEESCSSCH
T ss_pred             -hcCCEEEEeCChHHHHHHHHHhhccCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCC--CCEEECCCCCCH
Confidence             478999999988888777754321 2444444444662     00      33456555543  456655 44443

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.33  E-value=7.2e-07  Score=79.99  Aligned_cols=97  Identities=14%  Similarity=0.137  Sum_probs=70.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      +|||+|+|+ |+||+.+++.+.+. +++++.++|++.  ..+..+.   ..+++.+++++++++      .++|+||.++
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~-g~~~v~~~~~~~--~~~~~~~---~~~g~~~~~~~~~~~------~~~Dvvi~av   76 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRK-GFRIVQVYSRTE--ESARELA---QKVEAEYTTDLAEVN------PYAKLYIVSL   76 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSH--HHHHHHH---HHTTCEEESCGGGSC------SCCSEEEECC
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHC-CCeEEEEEeCCH--HHHHHHH---HHcCCceeCCHHHHh------cCCCEEEEec
Confidence            479999998 99999999988764 677788888653  2222222   234667788888877      3789999999


Q ss_pred             CchhHHHHHHHHHH---cCCCEEEeCCCCCHHH
Q 022250          115 DASTVYDNVKQATA---FGMRSVVYVPHIQLET  144 (300)
Q Consensus       115 ~p~~~~~~~~~al~---~G~~vVigTTG~~~e~  144 (300)
                      ++..+.+.+....+   .+..+|..++|++.+.
T Consensus        77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHH
Confidence            98877777665544   4666666677887544

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.30  E-value=2.9e-06  Score=83.12  Aligned_cols=130  Identities=16%  Similarity=0.097  Sum_probs=88.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-------ecCHHHHHhcccccCCc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKAR  107 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~  107 (300)
                      +.||+|+|+ |.+|+.+++.+.+.+++++ .+++++.  ..+..++.   ..++..       .+++.++++      ++
T Consensus        23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V-~v~~R~~--~ka~~la~---~~~~~~~~~D~~d~~~l~~~l~------~~   89 (467)
T 2axq_A           23 GKNVLLLGS-GFVAQPVIDTLAANDDINV-TVACRTL--ANAQALAK---PSGSKAISLDVTDDSALDKVLA------DN   89 (467)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSTTEEE-EEEESSH--HHHHHHHG---GGTCEEEECCTTCHHHHHHHHH------TS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHhCCCCeE-EEEECCH--HHHHHHHH---hcCCcEEEEecCCHHHHHHHHc------CC
Confidence            468999998 9999999999987767874 4566542  22222321   112211       124455553      78


Q ss_pred             cEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH--HHHHHHHHh
Q 022250          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISA  179 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~--ll~~~a~~~  179 (300)
                      |+||..+++.........|++.|++++.- ..+++ ....|.+.|+++|+.++-...|..|+.  +..+++.++
T Consensus        90 DvVIn~tp~~~~~~v~~a~l~~g~~vvd~-~~~~p-~~~~Ll~~Ak~aGv~~i~g~G~~PG~~~~~a~~li~q~  161 (467)
T 2axq_A           90 DVVISLIPYTFHPNVVKSAIRTKTDVVTS-SYISP-ALRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEV  161 (467)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHTCEEEEC-SCCCH-HHHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHHHHH
T ss_pred             CEEEECCchhhhHHHHHHHHhcCCEEEEe-ecCCH-HHHHHHHHHHHcCCEEEecCCcCccchHHHHHHHHHHH
Confidence            99999988776777788999999999853 33444 346778888888999888888877764  234455454

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.28  E-value=3.3e-06  Score=76.45  Aligned_cols=113  Identities=12%  Similarity=0.078  Sum_probs=71.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      +||||+|+|+ |.||+.+++.+.+ .++++. ++| +.  ..+..+.    +.|+.++++++++++      ++|+||.+
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~-~g~~V~-~~~-~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~   65 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLAR-AGHQLH-VTT-IG--PVADELL----SLGAVNVETARQVTE------FADIIFIM   65 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHH-TTCEEE-ECC-SS--CCCHHHH----TTTCBCCSSHHHHHH------TCSEEEEC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHh-CCCEEE-EEc-CH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEE
Confidence            3579999998 9999999998875 478875 556 43  2222332    236667788999884      78999987


Q ss_pred             CCchhH-HHHHH------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          114 TDASTV-YDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       114 T~p~~~-~~~~~------~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      ++.... .+.+.      ..+..|..+|.-+++ ++...++|.+...+.++.++-+|
T Consensus        66 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~g~~~~~~p  121 (295)
T 1yb4_A           66 VPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSI-SPIETKRFAQRVNEMGADYLDAP  121 (295)
T ss_dssp             CSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCC-CHHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCCHHHHHHHHhCchhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHcCCeEEEcc
Confidence            755543 33333      123445556555555 44455667777766666655444

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=98.28  E-value=1.7e-06  Score=84.70  Aligned_cols=131  Identities=11%  Similarity=0.104  Sum_probs=88.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEE--EEecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAG--AIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg--~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ++||.|+|+ |.||+.++..+.++++++++.  ++|+...+.++.+..|. ....+.+. +|++++++++.+  +.|+||
T Consensus        13 ~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~-~~~~~~Vdadnv~~~l~aLl~--~~DvVI   88 (480)
T 2ph5_A           13 KNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGV-SFKLQQITPQNYLEVIGSTLE--ENDFLI   88 (480)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTC-EEEECCCCTTTHHHHTGGGCC--TTCEEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCC-ceeEEeccchhHHHHHHHHhc--CCCEEE
Confidence            478999998 999999999999888874322  34665555565554443 12223333 345454433222  249999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCCC-CC---H------------HHHHHHHHHh-hhCCCeEEEcCCCcHHHH
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVPH-IQ---L------------ETVSALSAFC-DKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTTG-~~---~------------e~~~~L~~~a-~~~~i~iv~a~N~SiGv~  170 (300)
                      +.+.|....+.++.|+++|++.+--+-. |+   .            +....+.+.+ +++| ..+...-|..|+.
T Consensus        89 N~s~~~~~l~Im~acleaGv~YlDTa~E~~~p~~~~~~~~p~~~~~Y~~~~~~~~~~~~~~G-tAilg~G~nPGvv  163 (480)
T 2ph5_A           89 DVSIGISSLALIILCNQKGALYINAATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQK-TALITHGANPGLV  163 (480)
T ss_dssp             ECCSSSCHHHHHHHHHHHTCEEEESSCCCCCC----------CCCHHHHHHHHHTTTTTCCS-CEECSCBTTTBHH
T ss_pred             ECCccccCHHHHHHHHHcCCCEEECCCCcccccccccccCcchhhhHHHHHHHHHHHHhcCC-cEEecCCCCccHH
Confidence            9999999999999999999999965421 11   1            2223455655 4366 7788899999976

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=98.27  E-value=2.4e-06  Score=81.02  Aligned_cols=100  Identities=16%  Similarity=0.160  Sum_probs=72.6

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC-------CCcceec-CHHHHHhcccc
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-------LEIPVMS-DLTMVLGSISQ  103 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-------~gv~v~~-dl~~~l~~~~~  103 (300)
                      |++++||+|+|+||-.|+.+++.+.++|.+||+.+..+...|+...+...+...       ....+.+ +.++ +     
T Consensus         4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~-----   77 (359)
T 4dpl_A            4 MRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M-----   77 (359)
T ss_dssp             --CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C-----
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h-----
Confidence            345799999999999999999999999999999998777777776653210000       0122221 2222 2     


Q ss_pred             cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                       .++|+|+.++......+.+..+++.|+.+|.=+.
T Consensus        78 -~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa  111 (359)
T 4dpl_A           78 -DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSP  111 (359)
T ss_dssp             -TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSS
T ss_pred             -cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCC
Confidence             3789999888888889999999999999887553

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=98.27  E-value=2.4e-06  Score=81.02  Aligned_cols=100  Identities=16%  Similarity=0.160  Sum_probs=72.6

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC-------CCcceec-CHHHHHhcccc
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-------LEIPVMS-DLTMVLGSISQ  103 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-------~gv~v~~-dl~~~l~~~~~  103 (300)
                      |++++||+|+|+||-.|+.+++.+.++|.+||+.+..+...|+...+...+...       ....+.+ +.++ +     
T Consensus         4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~-----   77 (359)
T 4dpk_A            4 MRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M-----   77 (359)
T ss_dssp             --CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C-----
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h-----
Confidence            345799999999999999999999999999999998777777776653210000       0122221 2222 2     


Q ss_pred             cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                       .++|+|+.++......+.+..+++.|+.+|.=+.
T Consensus        78 -~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa  111 (359)
T 4dpk_A           78 -DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSP  111 (359)
T ss_dssp             -TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSS
T ss_pred             -cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCC
Confidence             3789999888888889999999999999887553

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.25  E-value=6.5e-06  Score=74.84  Aligned_cols=117  Identities=18%  Similarity=0.197  Sum_probs=75.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  .....+.    +.|+.++++++++++      ++|+||.++
T Consensus         4 ~~~i~iiG~-G~~G~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~v   68 (301)
T 3cky_A            4 SIKIGFIGL-GAMGKPMAINLLK-EGVTVY-AFDLME--ANVAAVV----AQGAQACENNQKVAA------ASDIIFTSL   68 (301)
T ss_dssp             CCEEEEECC-CTTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEEC
Confidence            589999998 9999999998875 477865 577542  2222222    236777889998884      689999887


Q ss_pred             Cchh-HHHHHH------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250          115 DAST-VYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (300)
Q Consensus       115 ~p~~-~~~~~~------~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiG  168 (300)
                      +... +.+.+.      ..+..|..+|..+++. ++..++|.+...+.++.++-+| .+.|
T Consensus        69 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~-~~~~~~l~~~~~~~g~~~~~~p-~~~~  127 (301)
T 3cky_A           69 PNAGIVETVMNGPGGVLSACKAGTVIVDMSSVS-PSSTLKMAKVAAEKGIDYVDAP-VSGG  127 (301)
T ss_dssp             SSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCC-HHHHHHHHHHHHHTTCEEEECC-EESH
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEEEcc-CCCC
Confidence            5433 344432      2345577666656666 3445567776666666666554 3444

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.25  E-value=4.1e-06  Score=76.96  Aligned_cols=134  Identities=16%  Similarity=0.065  Sum_probs=74.9

Q ss_pred             ccccccceeeEeecCCCCC---cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec
Q 022250           16 SQNVKAKRFISCSTNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS   92 (300)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~---~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~   92 (300)
                      +..+.-+-...|-.++..|   ++||+|+|+ |.||+.+++.+.+ .++++ .++|++.  ..+..+.    +.|+.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~-G~mG~~~a~~l~~-~g~~V-~~~~~~~--~~~~~~~----~~g~~~~~   78 (316)
T 2uyy_A            8 SSGVDLGTENLYFQSMGSITPTDKKIGFLGL-GLMGSGIVSNLLK-MGHTV-TVWNRTA--EKCDLFI----QEGARLGR   78 (316)
T ss_dssp             -----------------CCCCCSSCEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSSG--GGGHHHH----HTTCEECS
T ss_pred             ccccCccccceeecCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHh-CCCEE-EEEeCCH--HHHHHHH----HcCCEEcC
Confidence            3334334444444443322   389999998 9999999998875 46775 4567543  2222222    24566778


Q ss_pred             CHHHHHhcccccCCccEEEEcCC-chhHHHHHHH------HHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250           93 DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~------al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      +++++++      ++|+||.+++ |....+.+..      .+..+..+|..++ .+.+..++|.+...+.++.++-+|.+
T Consensus        79 ~~~~~~~------~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~-~~~~~~~~l~~~~~~~~~~~v~~p~~  151 (316)
T 2uyy_A           79 TPAEVVS------TCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMST-VDADTVTELAQVIVSRGGRFLEAPVS  151 (316)
T ss_dssp             CHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CHHHHHh------cCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEcCcc
Confidence            8888874      6899998877 5655555542      2334555554444 44555666777665556666655544

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.25  E-value=9e-07  Score=80.46  Aligned_cols=119  Identities=14%  Similarity=0.112  Sum_probs=72.5

Q ss_pred             eecCCCC-CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccC
Q 022250           27 CSTNPPQ-SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        27 ~~~~~~~-~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (300)
                      |++++++ ||+||+|+|++|+||+.+++.+.+ .+++++ ++|++.  .....+.    +.|+.+. +.++++      .
T Consensus         2 ~~~~~~~~mmm~I~iIG~tG~mG~~la~~l~~-~g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~------~   66 (286)
T 3c24_A            2 MVKDKNDVGPKTVAILGAGGKMGARITRKIHD-SAHHLA-AIEIAP--EGRDRLQ----GMGIPLT-DGDGWI------D   66 (286)
T ss_dssp             ----CCSCCCCEEEEETTTSHHHHHHHHHHHH-SSSEEE-EECCSH--HHHHHHH----HTTCCCC-CSSGGG------G
T ss_pred             CccccccccCCEEEEECCCCHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----hcCCCcC-CHHHHh------c
Confidence            3555553 568999999879999999998875 467876 577542  1122221    1344333 555665      3


Q ss_pred             CccEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE-EcCCC
Q 022250          106 ARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTL  165 (300)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv-~a~N~  165 (300)
                      ++|+||.+++|..+.+.+.....   .+.-+|..+++.+.+.   +.++  ..+..++ ..||+
T Consensus        67 ~aDvVi~av~~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~---l~~~--~~~~~~v~~~P~~  125 (286)
T 3c24_A           67 EADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAG---VMPE--RADITYFIGHPCH  125 (286)
T ss_dssp             TCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEESCSHHHHHT---CSCC--CTTSEEEEEEECC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHhCCCCCEEEECCCCchhHH---HHhh--hCCCeEEecCCCC
Confidence            78999999988887776665543   3454555566664333   2222  2346677 66776

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=98.25  E-value=2.3e-06  Score=75.57  Aligned_cols=92  Identities=20%  Similarity=0.226  Sum_probs=69.6

Q ss_pred             cceEEEEcCCchHHHHHHHHH-HhcCCcEEEEEEecCCCCc-chhh-hhcCcCCCCccee--cCHHHHHhcccccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSHSVGE-DIGM-VCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i-~~~~~~eLvg~vd~~~~g~-d~~~-~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DV  109 (300)
                      +.||+|+|| |++|+++++.+ .+..+++++|++|.++  . ..+. .     -.|+|++  ++++++++    +.++|+
T Consensus        84 ~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iVg~~D~dp--~~kiG~~~-----i~GvpV~~~~dL~~~v~----~~~Id~  151 (212)
T 3keo_A           84 TTNVMLVGC-GNIGRALLHYRFHDRNKMQISMAFDLDS--NDLVGKTT-----EDGIPVYGISTINDHLI----DSDIET  151 (212)
T ss_dssp             CEEEEEECC-SHHHHHHTTCCCCTTSSEEEEEEEECTT--STTTTCBC-----TTCCBEEEGGGHHHHC-----CCSCCE
T ss_pred             CCEEEEECc-CHHHHHHHHhhhcccCCeEEEEEEeCCc--hhccCcee-----ECCeEEeCHHHHHHHHH----HcCCCE
Confidence            579999999 99999999974 2456899999999653  1 1221 1     1356665  67888776    368999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      +|.+++.....+.+..+.++|++-+.--|
T Consensus       152 vIIAvPs~~aq~v~d~lv~~GIk~I~nFa  180 (212)
T 3keo_A          152 AILTVPSTEAQEVADILVKAGIKGILSFS  180 (212)
T ss_dssp             EEECSCGGGHHHHHHHHHHHTCCEEEECS
T ss_pred             EEEecCchhHHHHHHHHHHcCCCEEEEcC
Confidence            99888777778899999999999886643

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=98.24  E-value=2.8e-06  Score=83.02  Aligned_cols=111  Identities=15%  Similarity=0.154  Sum_probs=84.3

Q ss_pred             cceEEEEcCCc---hHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVK---EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~G---rMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      +-+|+|+|+++   ++|..+.+.+.+.....+ ..+++.  +   ++      -.|+++|.+++++.      ..+|++|
T Consensus         8 p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v-~pVnP~--~---~~------i~G~~~y~sl~~lp------~~~Dlav   69 (457)
T 2csu_A            8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKV-YPVNIK--E---EE------VQGVKAYKSVKDIP------DEIDLAI   69 (457)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEE-EEECSS--C---SE------ETTEECBSSTTSCS------SCCSEEE
T ss_pred             CCeEEEECcCCCCCchHHHHHHHHHHcCCCEE-EEECCC--C---Ce------ECCEeccCCHHHcC------CCCCEEE
Confidence            46799999973   789999999876543444 445543  1   11      25789999999885      4799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEe-CCCCCH--H----HHHHHHHHhhhCCCeEEEcCC
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVY-VPHIQL--E----TVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVig-TTG~~~--e----~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      .|++|+.+.+.++.|.+.|++.++- +.||.+  +    ..+++.++++++|+.+ +.||
T Consensus        70 i~vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~v-iGPn  128 (457)
T 2csu_A           70 IVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRI-IGPN  128 (457)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEE-ECSS
T ss_pred             EecCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEE-EcCC
Confidence            9999999999999999999997655 458853  1    2578899999988874 4555

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.24  E-value=5.8e-06  Score=75.08  Aligned_cols=114  Identities=17%  Similarity=0.118  Sum_probs=72.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+|||+|+|+ |.||+.+++.+.+ .++++ .++|++.  .....+.    +.|+..+++++++++      ++|+||.+
T Consensus         4 M~m~i~iiG~-G~~G~~~a~~l~~-~g~~V-~~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~   68 (299)
T 1vpd_A            4 MTMKVGFIGL-GIMGKPMSKNLLK-AGYSL-VVSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITM   68 (299)
T ss_dssp             --CEEEEECC-STTHHHHHHHHHH-TTCEE-EEECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEEC
T ss_pred             ccceEEEECc-hHHHHHHHHHHHh-CCCEE-EEEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEE
Confidence            5679999997 9999999998875 46775 4677542  1222222    236677889988884      68999988


Q ss_pred             CC-chhHHHHH------HHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          114 TD-ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       114 T~-p~~~~~~~------~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      ++ |....+.+      ...+..|..+|.-+++. ....++|.+...+.++.++-+|
T Consensus        69 v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~g~~~~~~p  124 (299)
T 1vpd_A           69 LPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIA-PLASREISDALKAKGVEMLDAP  124 (299)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCC-HHHHHHHHHHHHTTTCEEEECC
T ss_pred             CCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEEEec
Confidence            86 44444443      23445566665555555 4445567777666666655443

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=98.23  E-value=2.5e-06  Score=80.14  Aligned_cols=91  Identities=12%  Similarity=0.057  Sum_probs=66.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHH-HHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~-~l~~~~~~~~~DVVI  111 (300)
                      |+||+|+|++|++|+.+++.+.++  |++||+++.++...|+... +.+    ..+.+ .+++. .+      .++|+|+
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-~~~----~~i~~-~~~~~~~~------~~vDvVf   70 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-FNG----KTVRV-QNVEEFDW------SQVHIAL   70 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-ETT----EEEEE-EEGGGCCG------GGCSEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-ecC----ceeEE-ecCChHHh------cCCCEEE
Confidence            699999999999999999999888  8999999887554444322 111    12222 22221 22      3689999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                      +++......+.+..+++.|+.+|.-+
T Consensus        71 ~a~g~~~s~~~a~~~~~~G~~vId~s   96 (336)
T 2r00_A           71 FSAGGELSAKWAPIAAEAGVVVIDNT   96 (336)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECS
T ss_pred             ECCCchHHHHHHHHHHHcCCEEEEcC
Confidence            88888889999999999999777644

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.22  E-value=1.1e-05  Score=74.67  Aligned_cols=116  Identities=12%  Similarity=0.115  Sum_probs=77.2

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      +++||+|+|+ |.||+.+++.+.+ .++++. ++|++.  ..+..+.    +.|+..+++++++++      ++|+||.+
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~e~~~------~aDvVi~~   94 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCE-AGYALQ-VWNRTP--ARAASLA----ALGATIHEQARAAAR------DADIVVSM   94 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----TTTCEEESSHHHHHT------TCSEEEEC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHh-CCCeEE-EEcCCH--HHHHHHH----HCCCEeeCCHHHHHh------cCCEEEEE
Confidence            4689999998 9999999998875 478865 467643  2223332    347778899999984      78999977


Q ss_pred             CCc-hhHHHHHH--H---HHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          114 TDA-STVYDNVK--Q---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       114 T~p-~~~~~~~~--~---al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      .+. ..+.+.+.  .   .+..|..+|. ++..+++..+++.+..++.++..+-+|-+
T Consensus        95 vp~~~~~~~v~~~~~~~~~l~~~~~vi~-~st~~~~~~~~~~~~~~~~g~~~~~~pv~  151 (320)
T 4dll_A           95 LENGAVVQDVLFAQGVAAAMKPGSLFLD-MASITPREARDHAARLGALGIAHLDTPVS  151 (320)
T ss_dssp             CSSHHHHHHHHTTTCHHHHCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CCCHHHHHHHHcchhHHhhCCCCCEEEe-cCCCCHHHHHHHHHHHHHcCCEEEeCCCc
Confidence            763 34444432  2   2344554544 44445566677777777777777766644

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.21  E-value=1.3e-05  Score=73.30  Aligned_cols=121  Identities=13%  Similarity=0.080  Sum_probs=74.2

Q ss_pred             EeecCCC-CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhccccc
Q 022250           26 SCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS  104 (300)
Q Consensus        26 ~~~~~~~-~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~  104 (300)
                      +|...++ .|++||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  ..+..+.    +.|+..++|+++++      
T Consensus         5 ~~~~~~~M~~~~~I~vIG~-G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~------   69 (296)
T 3qha_A            5 MTTNAAHTTEQLKLGYIGL-GNMGAPMATRMTE-WPGGVT-VYDIRI--EAMTPLA----EAGATLADSVADVA------   69 (296)
T ss_dssp             ----------CCCEEEECC-STTHHHHHHHHTT-STTCEE-EECSST--TTSHHHH----HTTCEECSSHHHHT------
T ss_pred             cCCCcccccCCCeEEEECc-CHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCEEcCCHHHHH------
Confidence            3444443 23579999997 9999999998875 477765 467653  2222222    34677788999986      


Q ss_pred             CCccEEEEcCC-chhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          105 KARAVVIDFTD-ASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       105 ~~~DVVIDfT~-p~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      . +|+||.+.+ +..+.+.+...++   .|. +|+-++...+...+++.+..++.++..+-+|
T Consensus        70 ~-aDvvi~~vp~~~~~~~v~~~l~~~l~~g~-ivv~~st~~~~~~~~~~~~~~~~g~~~~~~p  130 (296)
T 3qha_A           70 A-ADLIHITVLDDAQVREVVGELAGHAKPGT-VIAIHSTISDTTAVELARDLKARDIHIVDAP  130 (296)
T ss_dssp             T-SSEEEECCSSHHHHHHHHHHHHTTCCTTC-EEEECSCCCHHHHHHHHHHHGGGTCEEEECC
T ss_pred             h-CCEEEEECCChHHHHHHHHHHHHhcCCCC-EEEEeCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            5 899997776 3445555544443   344 4444444456666677777777677666554

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=98.21  E-value=2.6e-06  Score=80.13  Aligned_cols=93  Identities=16%  Similarity=0.147  Sum_probs=66.1

Q ss_pred             CcceEEEEcCCchHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVV  110 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVV  110 (300)
                      |++||+|+|++|++|+.+++.+.  .+|.++|+++.++...|+... +.|    ..+.+.+ +.++ +      .++|+|
T Consensus         5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~-~~g----~~i~~~~~~~~~-~------~~~DvV   72 (340)
T 2hjs_A            5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FAE----SSLRVGDVDSFD-F------SSVGLA   72 (340)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ETT----EEEECEEGGGCC-G------GGCSEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc-cCC----cceEEecCCHHH-h------cCCCEE
Confidence            56899999999999999999998  668999998877544443221 111    1122221 2222 2      368999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      +.++......+.+..++++|+.+|.-+.
T Consensus        73 ~~a~g~~~s~~~a~~~~~aG~kvId~Sa  100 (340)
T 2hjs_A           73 FFAAAAEVSRAHAERARAAGCSVIDLSG  100 (340)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             EEcCCcHHHHHHHHHHHHCCCEEEEeCC
Confidence            9888888889999999999998776443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.20  E-value=1.4e-05  Score=72.61  Aligned_cols=112  Identities=15%  Similarity=0.105  Sum_probs=76.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      +||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  ..+..+.    +.|+..++|++++++      ++|+||.+.+
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVK-AGCSVT-IWNRSP--EKAEELA----ALGAERAATPCEVVE------SCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEee-cHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEEcC
Confidence            68999998 9999999999875 478876 577653  2223332    346777889999985      6899997776


Q ss_pred             -chhHHHHH---H---HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          116 -ASTVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       116 -p~~~~~~~---~---~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                       |..+.+.+   .   ..++.|..+ +-+++.+++..+++.+..++.++..+-+|
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~v-i~~st~~~~~~~~~~~~~~~~g~~~~~~p  120 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGY-VDMSTVDPATSQRIGVAVVAKGGRFLEAP  120 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEE-EECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEE-EeCCCCCHHHHHHHHHHHHHhCCEEEECC
Confidence             44555554   2   334455544 44555566666777777777777665554

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=98.19  E-value=3.4e-06  Score=79.48  Aligned_cols=134  Identities=15%  Similarity=0.162  Sum_probs=81.2

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhh--c--Cc-CCCCccee--
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVC--D--ME-QPLEIPVM--   91 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~~~~~--g--~~-~~~gv~v~--   91 (300)
                      ||+||+|+|+ |++|+.+++++.++  |++|++++.|..             ..|+-.+++.  +  +. ....++++  
T Consensus         1 M~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~   79 (339)
T 3b1j_A            1 MTIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCD   79 (339)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECC
T ss_pred             CceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEec
Confidence            5689999999 99999999999888  999999987641             1121111100  0  00 00013333  


Q ss_pred             cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEE-EeCCC-----------CCHHHHHHHHHHhhhCCCeE
Q 022250           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVPH-----------IQLETVSALSAFCDKASMGC  159 (300)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vV-igTTG-----------~~~e~~~~L~~~a~~~~i~i  159 (300)
                      .|++++.-   .+.++|+|+++|......+.+...++.|..-| |-.++           .+.++   +.    ..+..+
T Consensus        80 ~dp~~l~w---~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~~~~p~~~V~gVN~~~---~~----~~~~~I  149 (339)
T 3b1j_A           80 RNPLNLPW---KEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSE---YR----HEDFAV  149 (339)
T ss_dssp             SCGGGSCT---TTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGG---CC----TTTCSE
T ss_pred             CChHHCcc---cccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCCCCCCeeEEcccCHHH---hC----cCCCeE
Confidence            35555420   01378999999988888999999999998833 32222           22221   11    101233


Q ss_pred             EEcCCCcHHHHHHHHHHHHhc
Q 022250          160 LIAPTLSIGSILLQQAAISAS  180 (300)
Q Consensus       160 v~a~N~SiGv~ll~~~a~~~~  180 (300)
                      +  +|=|-..|-+.-+++.+-
T Consensus       150 I--SnasCtTn~lap~lk~L~  168 (339)
T 3b1j_A          150 I--SNASCTTNCLAPVAKVLH  168 (339)
T ss_dssp             E--ECCCHHHHHHHHHHHHHH
T ss_pred             E--ECCcchhhHHHHHHHHHH
Confidence            4  677777776666666654

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=98.17  E-value=3.6e-06  Score=80.35  Aligned_cols=95  Identities=16%  Similarity=0.169  Sum_probs=63.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhh--c--Cc-CCCCccee--
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC--D--ME-QPLEIPVM--   91 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~-------------~~~g~d~~~~~--g--~~-~~~gv~v~--   91 (300)
                      ||+||+|+|+ |++|+.+++++.++  +++||+++-|.             ...|+-.+++.  +  +. ....++++  
T Consensus         1 M~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~   79 (380)
T 2d2i_A            1 MTIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCD   79 (380)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECC
T ss_pred             CCcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEec
Confidence            5689999999 99999999999888  89999998773             11222111100  0  00 00013333  


Q ss_pred             cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC
Q 022250           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (300)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~  132 (300)
                      .|++++.-.   +.++|+|+++|......+.+...++.|..
T Consensus        80 ~dp~~l~w~---~~gvDvV~e~TG~f~s~e~a~~hl~aGak  117 (380)
T 2d2i_A           80 RNPLNLPWK---EWDIDLVIESTGVFVTAEGASKHIQAGAK  117 (380)
T ss_dssp             SCGGGCCHH---HHTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             CChHHCCcc---cCCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            355554100   02789999999888889999999999987

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.16  E-value=2e-05  Score=71.79  Aligned_cols=114  Identities=9%  Similarity=0.096  Sum_probs=75.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~---eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ++||+|+|+ |+||+.+++.+.+. ++   + +.++|++.  ..+..+.   ..+|+.+++|..++++      ++|+||
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~-g~~~~~-V~v~dr~~--~~~~~l~---~~~gi~~~~~~~~~~~------~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIAN-GYDPNR-ICVTNRSL--DKLDFFK---EKCGVHTTQDNRQGAL------NADVVV   68 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHT-TCCGGG-EEEECSSS--HHHHHHH---HTTCCEEESCHHHHHS------SCSEEE
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHC-CCCCCe-EEEEeCCH--HHHHHHH---HHcCCEEeCChHHHHh------cCCeEE
Confidence            589999998 99999999998764 34   4 44677653  2233333   2457888889888884      789999


Q ss_pred             EcCCchhHHHHHHHHHHc---CCCEEEeC-CCCCHHHHHHHHHHhhhCCCeEE-EcCCCc
Q 022250          112 DFTDASTVYDNVKQATAF---GMRSVVYV-PHIQLETVSALSAFCDKASMGCL-IAPTLS  166 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~---G~~vVigT-TG~~~e~~~~L~~~a~~~~i~iv-~a~N~S  166 (300)
                      .+..|....+.+......   +..+|+.. .|++.+.   |.+.... +.+++ .-||..
T Consensus        69 lav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~---l~~~l~~-~~~vvr~mPn~p  124 (280)
T 3tri_A           69 LAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPL---IEKWLGK-ASRIVRAMPNTP  124 (280)
T ss_dssp             ECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHH---HHHHHTC-CSSEEEEECCGG
T ss_pred             EEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHHH---HHHHcCC-CCeEEEEecCCh
Confidence            999888877776655432   34466554 4888654   4444432 23444 336643

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.12  E-value=2.6e-05  Score=71.81  Aligned_cols=116  Identities=13%  Similarity=0.112  Sum_probs=76.2

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ...|+||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  ..+..+.    +.|+..++|++++++      ++|+||
T Consensus        18 ~~~m~~I~iIG~-G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~~~~~------~aDvvi   82 (310)
T 3doj_A           18 GSHMMEVGFLGL-GIMGKAMSMNLLK-NGFKVT-VWNRTL--SKCDELV----EHGASVCESPAEVIK------KCKYTI   82 (310)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEEE
T ss_pred             cccCCEEEEECc-cHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHH----HCCCeEcCCHHHHHH------hCCEEE
Confidence            344789999998 9999999999875 477766 477653  2223332    346777889999885      689999


Q ss_pred             EcCCc-hhHHHHH---HH---HHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          112 DFTDA-STVYDNV---KQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       112 DfT~p-~~~~~~~---~~---al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      .+.+. ..+.+.+   ..   .+..|. +|+-+++.++...+++.+..++.++..+-+|
T Consensus        83 ~~vp~~~~~~~v~~~~~~l~~~l~~g~-~vv~~st~~~~~~~~~~~~~~~~g~~~v~~p  140 (310)
T 3doj_A           83 AMLSDPCAALSVVFDKGGVLEQICEGK-GYIDMSTVDAETSLKINEAITGKGGRFVEGP  140 (310)
T ss_dssp             ECCSSHHHHHHHHHSTTCGGGGCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             EEcCCHHHHHHHHhCchhhhhccCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            77643 3444444   21   233444 4445555566666777777777677655544

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=98.11  E-value=6.2e-06  Score=78.45  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=68.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVV  110 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVV  110 (300)
                      |++||+|+|+||..|+.+++.+.++  |..+|+.+......|+... +.|    ....+.+ +. +.+      .++|+|
T Consensus         1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-~~~----~~~~~~~~~~-~~~------~~~Dvv   68 (366)
T 3pwk_A            1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-FKD----QDITIEETTE-TAF------EGVDIA   68 (366)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-ETT----EEEEEEECCT-TTT------TTCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-ecC----CCceEeeCCH-HHh------cCCCEE
Confidence            6799999999999999999988876  8888888776555555443 211    1122211 21 223      478999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      +.++......+.+..+++.|+.+|.-+..|
T Consensus        69 f~a~~~~~s~~~a~~~~~~G~~vIDlSa~~   98 (366)
T 3pwk_A           69 LFSAGSSTSAKYAPYAVKAGVVVVDNTSYF   98 (366)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             EECCChHhHHHHHHHHHHCCCEEEEcCCcc
Confidence            988888888999999999999888766543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.10  E-value=2.8e-05  Score=73.56  Aligned_cols=121  Identities=12%  Similarity=0.007  Sum_probs=74.1

Q ss_pred             ecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc
Q 022250           28 STNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        28 ~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (300)
                      ++|.+..++||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  ..+..+.    ..|+..++|++++++.   ...+
T Consensus        15 ~~~~Mm~~mkIgiIGl-G~mG~~~A~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~e~~~~---a~~~   82 (358)
T 4e21_A           15 TENLYFQSMQIGMIGL-GRMGADMVRRLRK-GGHECV-VYDLNV--NAVQALE----REGIAGARSIEEFCAK---LVKP   82 (358)
T ss_dssp             -------CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----TTTCBCCSSHHHHHHH---SCSS
T ss_pred             cchhhhcCCEEEEECc-hHHHHHHHHHHHh-CCCEEE-EEeCCH--HHHHHHH----HCCCEEeCCHHHHHhc---CCCC
Confidence            4555444589999997 9999999999885 467765 567643  2223332    3467778899998852   1245


Q ss_pred             cEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEE
Q 022250          108 AVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      |+||-+.++..+.+.+...+.   .|.-+|..+|.. +....++.+..++.++..+=
T Consensus        83 DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~vd  138 (358)
T 4e21_A           83 RVVWLMVPAAVVDSMLQRMTPLLAANDIVIDGGNSH-YQDDIRRADQMRAQGITYVD  138 (358)
T ss_dssp             CEEEECSCGGGHHHHHHHHGGGCCTTCEEEECSSCC-HHHHHHHHHHHHTTTCEEEE
T ss_pred             CEEEEeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-hHHHHHHHHHHHHCCCEEEe
Confidence            999988777755555554433   344455444444 44455666666666766553

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=98.10  E-value=6.2e-06  Score=77.66  Aligned_cols=101  Identities=23%  Similarity=0.193  Sum_probs=66.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHh---cCCcEEEEEEecC-------------CCCcchhhh--hc--Cc-CCCCccee-
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSH-------------SVGEDIGMV--CD--ME-QPLEIPVM-   91 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~-------------~~g~d~~~~--~g--~~-~~~gv~v~-   91 (300)
                      ||+||+|+|+ |++|+.+++++.+   +|++||+++.|..             ..|+-.++.  .+  +. ....++++ 
T Consensus         1 M~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~   79 (339)
T 2x5j_O            1 MTVRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLH   79 (339)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEEC
T ss_pred             CCeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEe
Confidence            4689999998 9999999999998   8999999988741             011100000  00  00 00123343 


Q ss_pred             -cCHHHHH-hcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCCC
Q 022250           92 -SDLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (300)
Q Consensus        92 -~dl~~~l-~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTTG  139 (300)
                       .|++++. .    +.++|+|+++|......+.+...++.|.. |||-.++
T Consensus        80 ~~dp~~l~~~----~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           80 ERSLQSLPWR----ELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             CSSGGGCCHH----HHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             cCChHHCccc----ccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence             2444431 1    02689999999888889999999999987 5555555

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.09  E-value=3.4e-06  Score=75.03  Aligned_cols=98  Identities=9%  Similarity=0.108  Sum_probs=65.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      |++||+|+|+ |+||+.+++.+.+. ++    ++. ++|++.  ..+..+.   ..+|+.+++|.+++++      ++|+
T Consensus         1 M~~~i~iIG~-G~mG~~~a~~l~~~-g~~~~~~V~-~~~r~~--~~~~~~~---~~~g~~~~~~~~e~~~------~aDv   66 (247)
T 3gt0_A            1 MDKQIGFIGC-GNMGMAMIGGMINK-NIVSSNQII-CSDLNT--ANLKNAS---EKYGLTTTTDNNEVAK------NADI   66 (247)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHT-TSSCGGGEE-EECSCH--HHHHHHH---HHHCCEECSCHHHHHH------HCSE
T ss_pred             CCCeEEEECc-cHHHHHHHHHHHhC-CCCCCCeEE-EEeCCH--HHHHHHH---HHhCCEEeCChHHHHH------hCCE
Confidence            5689999998 99999999998754 44    544 577642  2222222   2346777889999885      6899


Q ss_pred             EEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCHHHH
Q 022250          110 VIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETV  145 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~e~~  145 (300)
                      ||.+++|....+.+.....   .+.-+|.-+.|.+.+.+
T Consensus        67 Vilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l  105 (247)
T 3gt0_A           67 LILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIEST  105 (247)
T ss_dssp             EEECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHHHH
T ss_pred             EEEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHH
Confidence            9999988877777655432   34434444558886543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.09  E-value=1.4e-05  Score=73.55  Aligned_cols=119  Identities=12%  Similarity=0.054  Sum_probs=75.9

Q ss_pred             CCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      ++..+++||+|+|+ |.||+.+++.+.+ .+++++ ++|++.  ..+..+.    +.|+..+++++++++      ++|+
T Consensus         4 ~~~~~~~~IgiIG~-G~mG~~~A~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDv   68 (306)
T 3l6d_A            4 SDESFEFDVSVIGL-GAMGTIMAQVLLK-QGKRVA-IWNRSP--GKAAALV----AAGAHLCESVKAALS------ASPA   68 (306)
T ss_dssp             CCCCCSCSEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSSH--HHHHHHH----HHTCEECSSHHHHHH------HSSE
T ss_pred             CcccCCCeEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCE
Confidence            34455789999997 9999999999875 467765 467643  2222222    235667789999985      6899


Q ss_pred             EEEcCCchh-HHHHHH----HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          110 VIDFTDAST-VYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       110 VIDfT~p~~-~~~~~~----~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      ||.+.++.. +.+.+.    ..+..|.-+|. ++..+++..+++.+..++.++..+-+|-
T Consensus        69 Vi~~vp~~~~~~~v~~~~~l~~~~~g~ivid-~st~~~~~~~~l~~~~~~~g~~~vdapv  127 (306)
T 3l6d_A           69 TIFVLLDNHATHEVLGMPGVARALAHRTIVD-YTTNAQDEGLALQGLVNQAGGHYVKGMI  127 (306)
T ss_dssp             EEECCSSHHHHHHHHTSTTHHHHTTTCEEEE-CCCCCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEeCCHHHHHHHhcccchhhccCCCEEEE-CCCCCHHHHHHHHHHHHHcCCeEEeccc
Confidence            997776443 444332    22344554554 4444445556777777777777665543

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=98.08  E-value=1e-05  Score=76.51  Aligned_cols=98  Identities=14%  Similarity=0.068  Sum_probs=68.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC-----CcEEEEEEecCCCCcchhhhhcCcCC-CCccee-cCHHHHHhcccccCCc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR-----GMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVM-SDLTMVLGSISQSKAR  107 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-----~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~-~dl~~~l~~~~~~~~~  107 (300)
                      |+||+|+|+||.+|+.+++.+.+++     .+|++.+.++...|+...+..+.-.. ..+.+. .+.+ .+      .++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~-~~------~~~   81 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAA-VL------GGH   81 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHH-HH------TTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHH-Hh------cCC
Confidence            5899999999999999999999988     89999988765555544332110000 122222 1333 34      378


Q ss_pred             cEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      |+|+.++......+.+..+ ++|+.+|.-+..+
T Consensus        82 DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~  113 (352)
T 2nqt_A           82 DAVFLALPHGHSAVLAQQL-SPETLIIDCGADF  113 (352)
T ss_dssp             SEEEECCTTSCCHHHHHHS-CTTSEEEECSSTT
T ss_pred             CEEEECCCCcchHHHHHHH-hCCCEEEEECCCc
Confidence            9999777777788999988 9998877666544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.07  E-value=1.5e-05  Score=72.26  Aligned_cols=117  Identities=15%  Similarity=0.097  Sum_probs=75.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+|+|+ |.||+.+++.+.+ .++++. ++|++.  ..+..+.    +.|+.++++++++++      ++|+||.+++
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~-~g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMK-HGYPLI-IYDVFP--DACKEFQ----DAGEQVVSSPADVAE------KADRIITMLP   65 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHH-TTCCEE-EECSST--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CeEEEEec-cHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            48999998 9999999998875 467755 577643  2222332    346777889988874      6899998774


Q ss_pred             -chhHHHHHHH------HHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          116 -ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       116 -p~~~~~~~~~------al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                       |....+.+..      .++.|. +|+-+.+.+.+..+++.+...+.++..+-+ ..+.|.
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~-~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~-p~~~g~  124 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGS-LLIDSSTIDPAVSKELAKEVEKMGAVFMDA-PVSGGV  124 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEESHH
T ss_pred             CHHHHHHHHhCchhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEEc-CCCCCh
Confidence             4444444432      223455 444477888877777766665545443333 355553

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.07  E-value=1.5e-05  Score=71.78  Aligned_cols=113  Identities=13%  Similarity=-0.011  Sum_probs=70.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |+||+|+|+ |.||+.+++.+.+  ++++. ++|++.  .....+.    +.|+..++ +++++      .++|+||.++
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~--g~~V~-~~~~~~--~~~~~~~----~~g~~~~~-~~~~~------~~~D~vi~~v   63 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR--RFPTL-VWNRTF--EKALRHQ----EEFGSEAV-PLERV------AEARVIFTCL   63 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT--TSCEE-EECSST--HHHHHHH----HHHCCEEC-CGGGG------GGCSEEEECC
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC--CCeEE-EEeCCH--HHHHHHH----HCCCcccC-HHHHH------hCCCEEEEeC
Confidence            468999998 9999999998875  78854 577643  2222221    12344444 56666      3789999888


Q ss_pred             Cchh-HHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          115 DAST-VYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       115 ~p~~-~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      ++.. ..+.+...   ++.|..+|..++ ......++|.+..++.++.++-+|++
T Consensus        64 ~~~~~~~~v~~~l~~~l~~~~~vv~~s~-~~~~~~~~l~~~~~~~g~~~~~~p~~  117 (289)
T 2cvz_A           64 PTTREVYEVAEALYPYLREGTYWVDATS-GEPEASRRLAERLREKGVTYLDAPVS  117 (289)
T ss_dssp             SSHHHHHHHHHHHTTTCCTTEEEEECSC-CCHHHHHHHHHHHHTTTEEEEECCEE
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            7554 44444332   234555554444 34445567777777667777777754

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.04  E-value=3.4e-05  Score=75.12  Aligned_cols=129  Identities=13%  Similarity=0.089  Sum_probs=85.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC-cc-----ee--cCHHHHHhcccccCC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-----VM--SDLTMVLGSISQSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v~-----v~--~dl~~~l~~~~~~~~  106 (300)
                      +.+|+|+|+ |.||+.+++.+.+ .+.+ +.+++++.  ..+..++   ...+ +.     +.  +++++++      .+
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~-~G~~-V~v~~R~~--~~a~~la---~~~~~~~~~~~Dv~d~~~l~~~l------~~   68 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTD-SGIK-VTVACRTL--ESAKKLS---AGVQHSTPISLDVNDDAALDAEV------AK   68 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHT-TTCE-EEEEESSH--HHHHHTT---TTCTTEEEEECCTTCHHHHHHHH------TT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CcCE-EEEEECCH--HHHHHHH---HhcCCceEEEeecCCHHHHHHHH------cC
Confidence            468999995 9999999999885 6788 45566542  1222222   1111 11     11  2444566      37


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH--HHHHHHHHh
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISA  179 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~--ll~~~a~~~  179 (300)
                      +|+||.++.+..+.+....|++.|++++..+ -..+ ....|.++|+++|+.++...+|..|..  +..+++.+.
T Consensus        69 ~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~~-~~~~-~~~~l~~aA~~aGv~~i~g~g~~pg~~~~~a~~li~q~  141 (450)
T 1ff9_A           69 HDLVISLIPYTFHATVIKSAIRQKKHVVTTS-YVSP-AMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEV  141 (450)
T ss_dssp             SSEEEECCC--CHHHHHHHHHHHTCEEEESS-CCCH-HHHHTHHHHHHTTCEEECSCBBTTBHHHHHHHHHHHHH
T ss_pred             CcEEEECCccccchHHHHHHHhCCCeEEEee-cccH-HHHHHHHHHHHCCCeEEeCCCCcCchHHHHHHHHHHHh
Confidence            9999999877666677788999999998653 2333 456788889999999998888876764  334555554

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.02  E-value=2.5e-05  Score=73.83  Aligned_cols=129  Identities=13%  Similarity=0.176  Sum_probs=76.8

Q ss_pred             CCCCC-cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh----------hcCcCCCCcceecCHHHHH
Q 022250           30 NPPQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV----------CDMEQPLEIPVMSDLTMVL   98 (300)
Q Consensus        30 ~~~~~-~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~----------~g~~~~~gv~v~~dl~~~l   98 (300)
                      +|++| +|||+|+|+ |.||..++..+.+ .+.++. +++++.  ..+..+          -|..-+.++.+++|+++++
T Consensus        23 ~~m~~~~mkI~VIGa-G~mG~alA~~La~-~G~~V~-l~~r~~--~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~   97 (356)
T 3k96_A           23 NAMEPFKHPIAILGA-GSWGTALALVLAR-KGQKVR-LWSYES--DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASL   97 (356)
T ss_dssp             ----CCCSCEEEECC-SHHHHHHHHHHHT-TTCCEE-EECSCH--HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHH
T ss_pred             hcccccCCeEEEECc-cHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHH
Confidence            34433 589999998 9999999998875 456654 456431  111111          1111112355678998888


Q ss_pred             hcccccCCccEEEEcCCchhHHHHHHHHH---HcCCCEEEeCCCCCHHH--H-HHHHHHhhhCCCeEEEcCCCcHHH
Q 022250           99 GSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLET--V-SALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTTG~~~e~--~-~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      +      ++|+||-+.++....+.+....   ..+..+|.-+.|+..+.  . +.+.+..-...+.++..|||.--+
T Consensus        98 ~------~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev  168 (356)
T 3k96_A           98 E------GVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEV  168 (356)
T ss_dssp             T------TCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHH
T ss_pred             h------cCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHH
Confidence            4      7899997777766666655443   34566776677876542  1 223333323446778899987643

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=98.00  E-value=6.7e-05  Score=69.01  Aligned_cols=117  Identities=14%  Similarity=0.134  Sum_probs=77.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |.-||+++|. |.||..+++.+.+ .+++++ ++|++.  ..+..+    .+.|..+.+++.++.+      ++|+||-+
T Consensus         4 Ms~kIgfIGL-G~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l----~~~G~~~~~s~~e~~~------~~dvvi~~   68 (297)
T 4gbj_A            4 MSEKIAFLGL-GNLGTPIAEILLE-AGYELV-VWNRTA--SKAEPL----TKLGATVVENAIDAIT------PGGIVFSV   68 (297)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHH-TTCEEE-EC---------CTT----TTTTCEECSSGGGGCC------TTCEEEEC
T ss_pred             CCCcEEEEec-HHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHH----HHcCCeEeCCHHHHHh------cCCceeee
Confidence            4569999997 9999999999885 588876 477643  122223    2457788889999874      78998865


Q ss_pred             CCchh-HHHH----HHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          114 TDAST-VYDN----VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       114 T~p~~-~~~~----~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      -+++. ..+.    +...+..|. +||-++..+++..+++.+.++++|+..+=+|=+.
T Consensus        69 l~~~~~~~~v~~~~~~~~~~~~~-iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsG  125 (297)
T 4gbj_A           69 LADDAAVEELFSMELVEKLGKDG-VHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFA  125 (297)
T ss_dssp             CSSHHHHHHHSCHHHHHHHCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEEC
T ss_pred             ccchhhHHHHHHHHHHhhcCCCe-EEEECCCCChHHHHHHHHHHHhcCCceecCCcCC
Confidence            54333 3332    223333443 5555555667888889999999998888777543

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=97.99  E-value=1.3e-05  Score=75.93  Aligned_cols=121  Identities=12%  Similarity=0.097  Sum_probs=80.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-----cC--------------HHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-----SD--------------LTM   96 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-----~d--------------l~~   96 (300)
                      .||+|+|+||.+|+..++.+.+.+++++++....... ....+.+   .+++.+++     ++              +.+
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~-~~l~~q~---~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~e   79 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNL-ELAFKIV---KEFNVKNVAITGDVEFEDSSINVWKGSHSIEE   79 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCH-HHHHHHH---HHHTCCEEEECSSCCCCCSSSEEEESTTHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCH-HHHHHHH---HHcCCCEEEEccHHHHHHHHHHHccCHHHHHH
Confidence            7899999999999999999988878999998542110 0111111   11122222     12              245


Q ss_pred             HHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      ++.    ..++|+|+..+.-.+.......|+++|+++.+..-.-.-..-+.+.++++++++.++  |=.|
T Consensus        80 l~~----~~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~ll--PVDS  143 (376)
T 3a06_A           80 MLE----ALKPDITMVAVSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELI--PVDS  143 (376)
T ss_dssp             HHH----HHCCSEEEECCCSTTHHHHHHHHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEEE--ECSH
T ss_pred             Hhc----CCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEEE--EEcc
Confidence            554    246899999998889999999999999999994322112234567777887766554  5555

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.99  E-value=5.7e-05  Score=69.94  Aligned_cols=113  Identities=11%  Similarity=0.064  Sum_probs=73.8

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCC----Ccch-hhhhcCcCCCCcceec-CHHHHHhcccccC
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV----GEDI-GMVCDMEQPLEIPVMS-DLTMVLGSISQSK  105 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~----g~d~-~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~  105 (300)
                      +|++||+|+|+ |.||..+++.+.+ .+ +++. ++|++..    .++. ..+.    +.|+  .+ +++++++      
T Consensus        22 ~M~m~IgvIG~-G~mG~~lA~~L~~-~G~~~V~-~~dr~~~~~~~~~~~~~~~~----~~g~--~~~s~~e~~~------   86 (317)
T 4ezb_A           22 SMMTTIAFIGF-GEAAQSIAGGLGG-RNAARLA-AYDLRFNDPAASGALRARAA----ELGV--EPLDDVAGIA------   86 (317)
T ss_dssp             TSCCEEEEECC-SHHHHHHHHHHHT-TTCSEEE-EECGGGGCTTTHHHHHHHHH----HTTC--EEESSGGGGG------
T ss_pred             ccCCeEEEECc-cHHHHHHHHHHHH-cCCCeEE-EEeCCCccccchHHHHHHHH----HCCC--CCCCHHHHHh------
Confidence            36789999997 9999999998875 46 7766 5775420    0011 1111    2344  55 7778774      


Q ss_pred             CccEEEEcCCchhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250          106 ARAVVIDFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      ++|+||-+.++....+.+......  .-.+|+-+++.++...+++.+..++.++..+
T Consensus        87 ~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~  143 (317)
T 4ezb_A           87 CADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFV  143 (317)
T ss_dssp             GCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEE
T ss_pred             cCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            789999888877777766554442  1235666666667667777777776665443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.99  E-value=2.3e-05  Score=71.12  Aligned_cols=115  Identities=16%  Similarity=0.133  Sum_probs=75.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |+||+|+|+ |.||+.+++.+.+. ++++. ++|++.  ..+..+.    +.|+..++|++++++      ++|+||.+.
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRA-GFDVT-VWNRNP--AKCAPLV----ALGARQASSPAEVCA------ACDITIAML   65 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHH-TCCEE-EECSSG--GGGHHHH----HHTCEECSCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHH------cCCEEEEEc
Confidence            469999997 99999999998754 67765 467653  2222222    236677889999885      689999777


Q ss_pred             Cch-hHHHHH---HH---HHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          115 DAS-TVYDNV---KQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       115 ~p~-~~~~~~---~~---al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      ++. .+.+.+   ..   .+..|. +|+-++..++...+++.+..++.++..+-+|.+
T Consensus        66 ~~~~~~~~v~~~~~~l~~~l~~g~-~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  122 (287)
T 3pdu_A           66 ADPAAAREVCFGANGVLEGIGGGR-GYIDMSTVDDETSTAIGAAVTARGGRFLEAPVS  122 (287)
T ss_dssp             SSHHHHHHHHHSTTCGGGTCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CCHHHHHHHHcCchhhhhcccCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEECCcc
Confidence            654 444444   22   233444 444455555666677777777777776666644

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.98  E-value=2.3e-05  Score=74.92  Aligned_cols=100  Identities=21%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCcCC-------CCcceec-CHHHHHhccccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQP-------LEIPVMS-DLTMVLGSISQS  104 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~~~~~g~~~~-------~gv~v~~-dl~~~l~~~~~~  104 (300)
                      +|+||+|+|+||-.|+.+++.+.++|.+||+.+.. ....|+...+...+...       ....+.+ +.++.+      
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~------   91 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNF------   91 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTG------
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhc------
Confidence            36899999999999999999999999999998874 44567766543211000       0112211 111123      


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      .++|+|+.++......+.+..+++.|+.||.=+..
T Consensus        92 ~~~Dvvf~alp~~~s~~~~~~~~~~G~~VIDlSa~  126 (381)
T 3hsk_A           92 LECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKN  126 (381)
T ss_dssp             GGCSEEEECCCHHHHHHHHHHHHHTTCEEEECCST
T ss_pred             ccCCEEEECCChhHHHHHHHHHHhCCCEEEEcCCc
Confidence            36899997777777899999999999998876553

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.97  E-value=6.5e-07  Score=81.23  Aligned_cols=94  Identities=9%  Similarity=0.026  Sum_probs=53.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |||||+|+|+ |+||+.+++.+.+.  ++++.++|++.  ..+..+.   ..+++ .++|+++++      .++|+||.+
T Consensus         1 M~m~I~iIG~-G~mG~~la~~l~~~--~~v~~v~~~~~--~~~~~~~---~~~g~-~~~~~~~~~------~~~DvVila   65 (276)
T 2i76_A            1 MSLVLNFVGT-GTLTRFFLECLKDR--YEIGYILSRSI--DRARNLA---EVYGG-KAATLEKHP------ELNGVVFVI   65 (276)
T ss_dssp             ---CCEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHH---HHTCC-CCCSSCCCC------C---CEEEC
T ss_pred             CCceEEEEeC-CHHHHHHHHHHHHc--CcEEEEEeCCH--HHHHHHH---HHcCC-ccCCHHHHH------hcCCEEEEe
Confidence            5689999998 99999999987654  77767787642  1222222   12344 566777665      368999988


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHH
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLE  143 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e  143 (300)
                      ++|..+.+.+......+. +|+-++ +.+.+
T Consensus        66 v~~~~~~~v~~~l~~~~~-ivi~~s~~~~~~   95 (276)
T 2i76_A           66 VPDRYIKTVANHLNLGDA-VLVHCSGFLSSE   95 (276)
T ss_dssp             SCTTTHHHHHTTTCCSSC-CEEECCSSSCGG
T ss_pred             CChHHHHHHHHHhccCCC-EEEECCCCCcHH
Confidence            888887766654332344 444444 55443

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=97.96  E-value=4.5e-05  Score=72.47  Aligned_cols=92  Identities=12%  Similarity=0.038  Sum_probs=62.8

Q ss_pred             cceEEEEcCCchHHHHHHH-HHHhc--CCcEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVI-AVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~-~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DV  109 (300)
                      |+||+|+|++|.+|+.+++ .+.++  +..++..+... ..|+....+-|    ..+.+.  ++.++ ++      ++|+
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~G~~v~~~~g----~~i~~~~~~~~~~-~~------~~Dv   68 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQAAPSFGG----TTGTLQDAFDLEA-LK------ALDI   68 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTSBCCGGGT----CCCBCEETTCHHH-HH------TCSE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CCCCCccccCC----CceEEEecCChHH-hc------CCCE
Confidence            5799999999999999999 55543  23566554433 35554432222    123333  24444 32      7899


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCC-EEEeCC
Q 022250          110 VIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~-vVigTT  138 (300)
                      |++++......+.+..+++.|++ +||.-+
T Consensus        69 Vf~a~g~~~s~~~a~~~~~~G~k~vVID~s   98 (367)
T 1t4b_A           69 IVTCQGGDYTNEIYPKLRESGWQGYWIDAA   98 (367)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             EEECCCchhHHHHHHHHHHCCCCEEEEcCC
Confidence            99999888899999999999974 666655

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=97.96  E-value=1.8e-05  Score=74.19  Aligned_cols=101  Identities=24%  Similarity=0.202  Sum_probs=67.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcch---------hhhhcCc----CCC-----Ccceec--CH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI---------GMVCDME----QPL-----EIPVMS--DL   94 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~---------~~~~g~~----~~~-----gv~v~~--dl   94 (300)
                      |+||+|+|+ |++|+.+++++.++|++||+++-|....+.-+         +.+.|.-    ...     .+.++.  |.
T Consensus         1 ~ikVgI~G~-G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (330)
T 1gad_O            1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (330)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECc-CHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence            589999997 99999999999999999999998742211100         0010000    000     112332  44


Q ss_pred             HHH-HhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250           95 TMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus        95 ~~~-l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      +++ ..    ..++|+|+++|......+.+...++.|..+|+=+..+
T Consensus        80 ~~i~w~----~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~  122 (330)
T 1gad_O           80 ANLKWD----EVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  122 (330)
T ss_dssp             GGGCHH----HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             hhCccc----cccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCC
Confidence            443 10    0268999999988888999999999999988654333

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=97.94  E-value=1.3e-05  Score=75.92  Aligned_cols=99  Identities=19%  Similarity=0.181  Sum_probs=64.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe-cCCCCcc---------hhhhhcCc----CC-----CCcceec--C
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGED---------IGMVCDME----QP-----LEIPVMS--D   93 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d---------~~~~~g~~----~~-----~gv~v~~--d   93 (300)
                      |+||+|+|+ |++|+.+++++.++|++||+++-| ....+.-         -+.+.|.-    ..     ..++++.  |
T Consensus        17 ~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~d   95 (354)
T 3cps_A           17 QGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKD   95 (354)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSC
T ss_pred             ceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCC
Confidence            589999999 999999999999999999999988 2211100         00010000    00     0123332  4


Q ss_pred             HHHHH-hcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCC
Q 022250           94 LTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (300)
Q Consensus        94 l~~~l-~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTT  138 (300)
                      ++++. .    +.++|+|+++|......+.+...++.|.. +||-.+
T Consensus        96 p~~i~w~----~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~p  138 (354)
T 3cps_A           96 PAEIPWG----ASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAP  138 (354)
T ss_dssp             GGGCCHH----HHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSC
T ss_pred             hHHCCcc----cCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCC
Confidence            44431 0    03689999999888889999999999974 555444

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=97.94  E-value=3e-05  Score=73.32  Aligned_cols=97  Identities=15%  Similarity=0.091  Sum_probs=69.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+||+|+|+||..|+.+++.+.++|.+||+.+.+....|+...+....-. ..+.+. .|.+++.+      ++|+|+-+
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~-~~l~~~~~~~~~~~~------~~Dvvf~a   85 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSK------NCDVLFTA   85 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHH------HCSEEEEC
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhc-cCceEEeCCHHHhhc------CCCEEEEC
Confidence            79999999999999999999999999999998776667777665332101 123332 24555543      68999955


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      ++.....+.+..+  .|+.||--+..|
T Consensus        86 lp~~~s~~~~~~~--~g~~VIDlSsdf  110 (351)
T 1vkn_A           86 LPAGASYDLVREL--KGVKIIDLGADF  110 (351)
T ss_dssp             CSTTHHHHHHTTC--CSCEEEESSSTT
T ss_pred             CCcHHHHHHHHHh--CCCEEEECChhh
Confidence            5556667777776  888877666554

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.91  E-value=5.1e-05  Score=67.60  Aligned_cols=104  Identities=18%  Similarity=0.148  Sum_probs=69.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+|+|+ |.||+.+++.+.+ .++++.. +|+.........+.    +.|+.  +|+++++.      ++|+||.+.+
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~-~g~~V~~-~~~~~~~~~~~~~~----~~g~~--~~~~~~~~------~aDvvi~~v~   65 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRS-RGVEVVT-SLEGRSPSTIERAR----TVGVT--ETSEEDVY------SCPVVISAVT   65 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHH-TTCEEEE-CCTTCCHHHHHHHH----HHTCE--ECCHHHHH------TSSEEEECSC
T ss_pred             CeEEEEec-hHHHHHHHHHHHH-CCCeEEE-eCCccCHHHHHHHH----HCCCc--CCHHHHHh------cCCEEEEECC
Confidence            48999998 9999999998875 4778776 56521101112221    12443  66777774      7899998888


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhh
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~  154 (300)
                      +....+.+......-.++|+-+++.+.+..++|.+...+
T Consensus        66 ~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~l~~~~~~  104 (264)
T 1i36_A           66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEK  104 (264)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHHHhh
Confidence            877666666555544447777777776666677777655

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=97.91  E-value=2.6e-05  Score=73.35  Aligned_cols=98  Identities=22%  Similarity=0.206  Sum_probs=66.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhh---c----CcCCCCccee-
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC---D----MEQPLEIPVM-   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~-------------~~~g~d~~~~~---g----~~~~~gv~v~-   91 (300)
                      |+||+|+|+ |++|+.+++++.++  |++||+++-|.             ...|+-.+++-   +    . ....++++ 
T Consensus         1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v-~g~~i~v~~   78 (337)
T 1rm4_O            1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISV-DGKVIKVVS   78 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEE-TTEEEEEEC
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEE-CCeEEEEEe
Confidence            589999999 99999999999988  99999998852             11222111110   0    0 00012233 


Q ss_pred             -cCHHHH-HhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250           92 -SDLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus        92 -~dl~~~-l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                       .|++++ ..    +.++|+|+++|......+.+...++.|..+|+=+.
T Consensus        79 ~~dp~~i~w~----~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSa  123 (337)
T 1rm4_O           79 DRNPVNLPWG----DMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITA  123 (337)
T ss_dssp             CSCGGGSCHH----HHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESS
T ss_pred             cCChhhCccc----ccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECC
Confidence             344433 11    12689999999888889999999999988887543

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=97.90  E-value=0.00011  Score=59.21  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +.||+|+|+ |.+|+.+++.+.+.++++++|++|.+
T Consensus         4 ~~~vlIiGa-G~~g~~l~~~l~~~~g~~vvg~~d~~   38 (141)
T 3nkl_A            4 KKKVLIYGA-GSAGLQLANMLRQGKEFHPIAFIDDD   38 (141)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCcEEEEEEECC
Confidence            478999998 99999999999888899999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.87  E-value=4.2e-05  Score=70.05  Aligned_cols=115  Identities=12%  Similarity=0.101  Sum_probs=72.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-ecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      +++||+|+|+ |.||+.+++.+.+ .++++. ++|++.  ..+..+.    +.|... ++|++++++      ++|+||.
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~e~~~------~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLR-AGLSTW-GADLNP--QACANLL----AEGACGAAASAREFAG------VVDALVI   70 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCSEEESSSTTTTT------TCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HcCCccccCCHHHHHh------cCCEEEE
Confidence            3579999997 9999999999875 578766 467642  2222222    235555 778888873      7899997


Q ss_pred             cCCchhH-HHHH---H---HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          113 FTDASTV-YDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       113 fT~p~~~-~~~~---~---~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      +.++... .+.+   .   ..++.|.-+| -++...+...+++.+..++.++..+-.|-
T Consensus        71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv-~~st~~~~~~~~~~~~~~~~g~~~~~~pv  128 (303)
T 3g0o_A           71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVM-VSSTISSADAQEIAAALTALNLNMLDAPV  128 (303)
T ss_dssp             CCSSHHHHHHHHC--CCCGGGSCTTCEEE-ECSCCCHHHHHHHHHHHHTTTCEEEECCE
T ss_pred             ECCCHHHHHHHHhChhhHHhhCCCCCEEE-ecCCCCHHHHHHHHHHHHHcCCeEEeCCC
Confidence            7765433 3333   1   2233454444 44445566667777777776776665553

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=97.85  E-value=0.00031  Score=66.31  Aligned_cols=141  Identities=15%  Similarity=0.160  Sum_probs=94.5

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcC----------------------CcEEEEEEec--CCCCcchhhhhcCc-----
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKAR----------------------GMEVAGAIDS--HSVGEDIGMVCDME-----   83 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~----------------------~~eLvg~vd~--~~~g~d~~~~~g~~-----   83 (300)
                      +.++||+|+|. |+.|+++++-+...+                      ++++++++|.  .+.|++..+..=..     
T Consensus        13 ~~~~rVaIVGv-GN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~~l~~A~~~~~n~~~   91 (367)
T 1gr0_A           13 STEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTI   91 (367)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCC
T ss_pred             ccCCCEEEECc-ChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHHHhhCCEecCCCchh
Confidence            45799999999 999999999665444                      6789999994  34566543211000     


Q ss_pred             -----CCCCcc-----------------------eecCHHHHHhcccccCCccEEEEcCC---chhHHHHHHHHHHcCCC
Q 022250           84 -----QPLEIP-----------------------VMSDLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMR  132 (300)
Q Consensus        84 -----~~~gv~-----------------------v~~dl~~~l~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~  132 (300)
                           .+.++.                       ...|+.+.++    +.++||+|.+-+   -++..-++..|++.|++
T Consensus        92 ~~~~v~~~~v~v~~g~~ldgia~~~~~~i~~s~~~~~Di~~~~~----~~~~dVvV~~lp~gs~~aS~~YA~Aal~ag~~  167 (367)
T 1gr0_A           92 KIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALK----EAKVDVLVSYLPVGSEEADKFYAQCAIDAGVA  167 (367)
T ss_dssp             CCSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHH----HTTCSEEEECCCTTCHHHHHHHHHHHHHHTCE
T ss_pred             hhhcccccCceEccCCCCCchhhhhhhccccccchhhHHHHHHH----HhCCcEEEEeeeCCCcCHHHHHHHHHHHcCCc
Confidence                 001110                       1125555554    478999998753   34456677899999999


Q ss_pred             EEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc--HHHHHHHHH-HHHhc
Q 022250          133 SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQA-AISAS  180 (300)
Q Consensus       133 vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S--iGv~ll~~~-a~~~~  180 (300)
                      .|-++|-+... ...+.++++++++| +..-.|=  .|..++... +..+.
T Consensus       168 fvN~~P~~~~~-~P~~~el~~~~g~p-i~GdD~Ksq~G~T~~k~~La~~l~  216 (367)
T 1gr0_A          168 FVNALPVFIAS-DPVWAKKFTDARVP-IVGDDIKSQVGATITHRVLAKLFE  216 (367)
T ss_dssp             EEECSSCCSTT-SHHHHHHHHHHTCE-EEESSBCCSSCHHHHHHHHHHHHH
T ss_pred             eEecCCccccC-CHHHHHHHHHcCCC-EeccccccccCCChHHHHHHHHHH
Confidence            99999955431 13477888999988 6677777  999988764 33433

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=97.83  E-value=3.1e-05  Score=72.77  Aligned_cols=97  Identities=25%  Similarity=0.248  Sum_probs=64.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhh--c--Cc-CCCCcceec--CH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVC--D--ME-QPLEIPVMS--DL   94 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~~~~~--g--~~-~~~gv~v~~--dl   94 (300)
                      |+||+|+|+ |++|+.+++++.++|++|++++-|..             ..|+-.++.-  +  +. ....+.++.  |.
T Consensus         1 mikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (334)
T 3cmc_O            1 AVKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP   79 (334)
T ss_dssp             CEEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCCh
Confidence            589999999 99999999999999999999988741             1111000000  0  00 001234442  44


Q ss_pred             HHH-HhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEe
Q 022250           95 TMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (300)
Q Consensus        95 ~~~-l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVig  136 (300)
                      +++ ..    +.++|+|+++|......+.+...++.|.. +||-
T Consensus        80 ~~i~w~----~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId  119 (334)
T 3cmc_O           80 ENLAWG----EIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS  119 (334)
T ss_dssp             GGCCTG----GGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEES
T ss_pred             hhcCcc----cCccCEEEECCCchhhHHHHHHHHHCCCCEEEEe
Confidence            443 11    13789999999888889999999999973 5543

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.81  E-value=7.2e-05  Score=66.46  Aligned_cols=92  Identities=10%  Similarity=0.074  Sum_probs=64.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      +|||+|+|+ |.||+.+++.+.+...   .++ .++|++..            ..|+.++++.+++++      ++|+||
T Consensus         4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v-~~~~~~~~------------~~g~~~~~~~~~~~~------~~D~vi   63 (262)
T 2rcy_A            4 NIKLGFMGL-GQMGSALAHGIANANIIKKENL-FYYGPSKK------------NTTLNYMSSNEELAR------HCDIIV   63 (262)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGE-EEECSSCC------------SSSSEECSCHHHHHH------HCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeE-EEEeCCcc------------cCceEEeCCHHHHHh------cCCEEE
Confidence            479999998 9999999998875431   444 45676431            135566778888874      689999


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCEEEeCCCCCHHHHH
Q 022250          112 DFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVS  146 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~--G~~vVigTTG~~~e~~~  146 (300)
                      .+.+|..+.+.+......  +..+|+-+.|++.+.++
T Consensus        64 ~~v~~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~  100 (262)
T 2rcy_A           64 CAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLE  100 (262)
T ss_dssp             ECSCTTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHH
Confidence            888888777777654332  44466666688876433

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.81  E-value=0.00012  Score=66.23  Aligned_cols=112  Identities=12%  Similarity=0.150  Sum_probs=68.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |+||+|+|+ |.||+.+++.+.+.. +.+++ ++|++.  .....+.    +.|+  ..++|++++++      ++|+||
T Consensus         6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~~------~aDvVi   71 (290)
T 3b1f_A            6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIV-GYNRSD--RSRDIAL----ERGIVDEATADFKVFAA------LADVII   71 (290)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEE-EECSSH--HHHHHHH----HTTSCSEEESCTTTTGG------GCSEEE
T ss_pred             cceEEEEee-CHHHHHHHHHHHhCCCCcEEE-EEcCCH--HHHHHHH----HcCCcccccCCHHHhhc------CCCEEE
Confidence            579999997 999999999887653 56754 567542  1122221    2333  34567777763      789999


Q ss_pred             EcCCchhHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250          112 DFTDASTVYDNVKQATAF---GMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~---G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      .+++|....+.+......   .-.+|+-+++......+.+.+...+.++.++
T Consensus        72 lavp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v  123 (290)
T 3b1f_A           72 LAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFV  123 (290)
T ss_dssp             ECSCHHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEE
T ss_pred             EcCCHHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEE
Confidence            888888887777665543   1234543334333333556655543234443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.80  E-value=0.00016  Score=66.65  Aligned_cols=113  Identities=15%  Similarity=0.134  Sum_probs=78.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |.||+++|. |+||..+++.+.+ .++++. ++|++.  ..+..+.    +.|....+++.++.+      .+|+||-+-
T Consensus         3 M~kIgfIGl-G~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~a~s~~e~~~------~~dvv~~~l   67 (300)
T 3obb_A            3 MKQIAFIGL-GHMGAPMATNLLK-AGYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAVQ------GADVVISML   67 (300)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHHT------TCSEEEECC
T ss_pred             cCEEEEeee-hHHHHHHHHHHHh-CCCeEE-EEcCCH--HHHHHHH----HcCCEEcCCHHHHHh------cCCceeecC
Confidence            469999997 9999999999885 578876 578653  2233333    356778889999984      789888543


Q ss_pred             -CchhHHHHHHH---HH---HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          115 -DASTVYDNVKQ---AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       115 -~p~~~~~~~~~---al---~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                       .++++.+.+..   .+   +.| .+||-++..+++...++.+.+++.|+..+=+|
T Consensus        68 ~~~~~v~~V~~~~~g~~~~~~~g-~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaP  122 (300)
T 3obb_A           68 PASQHVEGLYLDDDGLLAHIAPG-TLVLECSTIAPTSARKIHAAARERGLAMLDAP  122 (300)
T ss_dssp             SCHHHHHHHHHSSSSSTTSCCC--CEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred             CchHHHHHHHhchhhhhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCEEEecC
Confidence             34444444422   11   223 35666666677888899999999998877666

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.80  E-value=0.00017  Score=70.10  Aligned_cols=126  Identities=12%  Similarity=0.106  Sum_probs=73.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCc---------------CCCCcceecCHHHH
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DME---------------QPLEIPVMSDLTMV   97 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~---------------~~~gv~v~~dl~~~   97 (300)
                      |+|||+|+|+ |.||..++..+.+ .+++++ ++|.+.  ..+..+. |..               ....+..++|++++
T Consensus         1 M~mkI~VIG~-G~vG~~lA~~La~-~G~~V~-~~D~~~--~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea   75 (450)
T 3gg2_A            1 MSLDIAVVGI-GYVGLVSATCFAE-LGANVR-CIDTDR--NKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQA   75 (450)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHh-cCCEEE-EEECCH--HHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHH
Confidence            4589999997 9999999998875 478877 467532  1111111 100               01235667899988


Q ss_pred             HhcccccCCccEEEEcCCch----------hHHHHHHH---HHHcCCCEEEeCC---CCCHHHHHHHHHHhhh----CCC
Q 022250           98 LGSISQSKARAVVIDFTDAS----------TVYDNVKQ---ATAFGMRSVVYVP---HIQLETVSALSAFCDK----ASM  157 (300)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~----------~~~~~~~~---al~~G~~vVigTT---G~~~e~~~~L~~~a~~----~~i  157 (300)
                      ++      ++|+||.+.++.          .+.+.+..   .++.|.-||..+|   |.+++-.+.+.+....    ...
T Consensus        76 ~~------~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~  149 (450)
T 3gg2_A           76 VP------EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDF  149 (450)
T ss_dssp             GG------GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCE
T ss_pred             Hh------cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcce
Confidence            74      789999776433          44444443   3445666666665   2222222223332111    237


Q ss_pred             eEEEcCCCcHHHH
Q 022250          158 GCLIAPTLSIGSI  170 (300)
Q Consensus       158 ~iv~a~N~SiGv~  170 (300)
                      +++++|.|.--.+
T Consensus       150 ~v~~~Pe~a~eG~  162 (450)
T 3gg2_A          150 DIASNPEFLKEGN  162 (450)
T ss_dssp             EEEECCCCCCTTS
T ss_pred             eEEechhhhcccc
Confidence            8899999764433

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.80  E-value=5.7e-05  Score=65.00  Aligned_cols=120  Identities=10%  Similarity=0.056  Sum_probs=70.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCc-CCCCcceecCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME-QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||+|+|++|.||+.+++.+.+ .+++++. ++++.  .....+.   +.. ....+. .++++++++      ++|+||
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~-~g~~V~~-~~r~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~D~Vi   69 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLAT-LGHEIVV-GSRRE--EKAEAKAAEYRRIAGDASIT-GMKNEDAAE------ACDIAV   69 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEE-EESSH--HHHHHHHHHHHHHHSSCCEE-EEEHHHHHH------HCSEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHHHHhccccccCCCC-hhhHHHHHh------cCCEEE
Confidence            5899999559999999998875 4678664 56532  1111111   100 001133 457777774      689999


Q ss_pred             EcCCchhHHHHHHHHHH--cCCCEEEeCCCCCH-----------HHHHHHHHHhhhCCCeEEEc-CCCcHH
Q 022250          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQL-----------ETVSALSAFCDKASMGCLIA-PTLSIG  168 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~--~G~~vVigTTG~~~-----------e~~~~L~~~a~~~~i~iv~a-~N~SiG  168 (300)
                      .++.+..+.+.+....+  .+..+|.-++|++.           ...++|.+....  ..++.+ +|.+..
T Consensus        70 ~~~~~~~~~~~~~~l~~~~~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~v~~~~~~~~~  138 (212)
T 1jay_A           70 LTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES--EKVVSALHTIPAA  138 (212)
T ss_dssp             ECSCHHHHHHHHHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC--SCEEECCTTCCHH
T ss_pred             EeCChhhHHHHHHHHHHHcCCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC--CeEEEEccchHHH
Confidence            99988776665543221  36666666677762           113455555432  566665 354443

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.78  E-value=5.5e-05  Score=70.87  Aligned_cols=121  Identities=15%  Similarity=0.229  Sum_probs=72.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--c--------CcCCCCcceecCHHHHHhcccccC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--D--------MEQPLEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g--------~~~~~gv~v~~dl~~~l~~~~~~~  105 (300)
                      +||+|+|+ |.||..++..+.+ .++++. ++|++.  ..+..+.  +        ..-..++.+++|+++++      .
T Consensus        16 ~kI~iIG~-G~mG~~la~~L~~-~G~~V~-~~~r~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~   84 (366)
T 1evy_A           16 NKAVVFGS-GAFGTALAMVLSK-KCREVC-VWHMNE--EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY------N   84 (366)
T ss_dssp             EEEEEECC-SHHHHHHHHHHTT-TEEEEE-EECSCH--HHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH------T
T ss_pred             CeEEEECC-CHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHHHcCcccccccccccccceeeeCCHHHHH------c
Confidence            39999998 9999999998874 466655 466532  1111111  1        00011355667888877      3


Q ss_pred             CccEEEEcCCchhHHHHHHH-------HHHc-CCCEEEeCCCCCHHHHHHHHHHhhhC-C---CeEEEcCCCcH
Q 022250          106 ARAVVIDFTDASTVYDNVKQ-------ATAF-GMRSVVYVPHIQLETVSALSAFCDKA-S---MGCLIAPTLSI  167 (300)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~-------al~~-G~~vVigTTG~~~e~~~~L~~~a~~~-~---i~iv~a~N~Si  167 (300)
                      ++|+||-+..+..+.+.+..       .+.. +..+|.-+.|++.+..+.+.+..++. +   .+++..||+.-
T Consensus        85 ~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~  158 (366)
T 1evy_A           85 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAI  158 (366)
T ss_dssp             TCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHH
T ss_pred             CCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHH
Confidence            78999988877665555443       3445 77777666577654322233332221 2   46788899864

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=97.78  E-value=2.7e-05  Score=73.33  Aligned_cols=134  Identities=23%  Similarity=0.177  Sum_probs=77.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh--hcCc---CCCCcceec--C
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV--CDME---QPLEIPVMS--D   93 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~~~~--~g~~---~~~gv~v~~--d   93 (300)
                      |++||+|+|+ |++||.+.+++.+++++++|++-|..             ..|+--++.  -+-.   ....+.++.  |
T Consensus         1 m~ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~d   79 (342)
T 2ep7_A            1 MAIKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKD   79 (342)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence            4689999999 99999999999888999999997741             112100000  0000   001133442  3


Q ss_pred             HHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCC----------CCCHHHHHHHHHHhhhCCCeEEEc
Q 022250           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP----------HIQLETVSALSAFCDKASMGCLIA  162 (300)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTT----------G~~~e~~~~L~~~a~~~~i~iv~a  162 (300)
                      .+++--   .+.++|+|+++|......+.+..+++.|.. ||+..+          |.+.+.++      .+ +..++  
T Consensus        80 p~~~~w---~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~dvp~~vV~gVN~~~~~------~~-~~~II--  147 (342)
T 2ep7_A           80 PSQIPW---GDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYN------PK-EHNII--  147 (342)
T ss_dssp             GGGCCH---HHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCBSCSEECCTTTSGGGCC------TT-TCCEE--
T ss_pred             hhhCCc---cccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCCCCCceEEcCcCHHHhc------cc-CCeEE--
Confidence            333210   002689999888888888999999999975 454433          23333221      11 12344  


Q ss_pred             CCCcHHHHHHHHHHHHhc
Q 022250          163 PTLSIGSILLQQAAISAS  180 (300)
Q Consensus       163 ~N~SiGv~ll~~~a~~~~  180 (300)
                      +|=|--.|-|.-+++.+-
T Consensus       148 SNasCTTn~Lap~lk~L~  165 (342)
T 2ep7_A          148 SNASCTTNCLAPCVKVLN  165 (342)
T ss_dssp             ECCCHHHHHHHHHHHHHH
T ss_pred             ECCChHHHHHHHHHHHHH
Confidence            566666676666666654

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.78  E-value=0.00014  Score=69.09  Aligned_cols=92  Identities=15%  Similarity=0.021  Sum_probs=66.0

Q ss_pred             ceEEEEcCCchHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~-~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      |||+|+|+||-.|+.+++ .+.++|  ..+++.+..+. .|+...++-|.    ...+.  ++.++ +      .++|+|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~----~~~~~~~~~~~~-~------~~~Dvv   68 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD----AGMLHDAFDIES-L------KQLDAV   68 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC----CCBCEETTCHHH-H------TTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC----ceEEEecCChhH-h------ccCCEE
Confidence            689999999999999999 888887  68888765544 66655443321    12222  23444 3      379999


Q ss_pred             EEcCCchhHHHHHHHHHHcCC-CEEEeCCC
Q 022250          111 IDFTDASTVYDNVKQATAFGM-RSVVYVPH  139 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~-~vVigTTG  139 (300)
                      +.++......+.+..+++.|. .+||-.++
T Consensus        69 f~a~~~~~s~~~~~~~~~~G~k~~VID~ss   98 (370)
T 3pzr_A           69 ITCQGGSYTEKVYPALRQAGWKGYWIDAAS   98 (370)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             EECCChHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            977777788999999999997 36665553

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.76  E-value=0.00013  Score=69.64  Aligned_cols=93  Identities=15%  Similarity=0.093  Sum_probs=66.9

Q ss_pred             cceEEEEcCCchHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~-~i~~~~--~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DV  109 (300)
                      ++||+|+|+||-.|+.+++ .+.++|  ..+++.+..+ ..|+...++-|.    ...+.  ++.++ +      .++|+
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~----~~~v~~~~~~~~-~------~~vDv   71 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKN----ETTLKDATSIDD-L------KKCDV   71 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCS----CCBCEETTCHHH-H------HTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCC----ceEEEeCCChhH-h------cCCCE
Confidence            5899999999999999999 888887  6888876554 566654444321    12222  23444 3      27899


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCC-EEEeCCC
Q 022250          110 VIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~-vVigTTG  139 (300)
                      |+.++......+.+..+++.|+. +||-.++
T Consensus        72 vf~a~~~~~s~~~~~~~~~~G~k~~VID~ss  102 (377)
T 3uw3_A           72 IITCQGGDYTNDVFPKLRAAGWNGYWIDAAS  102 (377)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEECCChHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            99777777889999999999973 6665553

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=97.73  E-value=6.8e-05  Score=70.67  Aligned_cols=91  Identities=14%  Similarity=0.110  Sum_probs=67.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH-HHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVID  112 (300)
                      +||+|+|+||-.|+.+++.+.++  |..+|+.+......|+... +.|    ....+. +++ +.+      .++|+|+.
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-~~~----~~~~~~-~~~~~~~------~~~Dvvf~   69 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-FRG----QEIEVE-DAETADP------SGLDIALF   69 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-ETT----EEEEEE-ETTTSCC------TTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-ecC----CceEEE-eCCHHHh------ccCCEEEE
Confidence            79999999999999999998887  8889988776666666544 221    112222 111 222      37899998


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      ++......+.+..+++.|+.+|.-+.
T Consensus        70 a~~~~~s~~~a~~~~~~G~~vID~Sa   95 (344)
T 3tz6_A           70 SAGSAMSKVQAPRFAAAGVTVIDNSS   95 (344)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             CCChHHHHHHHHHHHhCCCEEEECCC
Confidence            88888889999999999998876554

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.73  E-value=0.00017  Score=70.50  Aligned_cols=122  Identities=12%  Similarity=0.083  Sum_probs=75.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|+ |.||+.++..+.+ .++++ .++|++.  ..+..+.......++..++|++++++.   ..++|+||.++
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~-~G~~V-~v~dr~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~---l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVES-RGYTV-AIYNRTT--SKTEEVFKEHQDKNLVFTKTLEEFVGS---LEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSSH--HHHHHHHHHTTTSCEEECSSHHHHHHT---BCSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHh-CCCEE-EEEcCCH--HHHHHHHHhCcCCCeEEeCCHHHHHhh---ccCCCEEEEEc
Confidence            479999998 9999999999875 46765 4677642  122222210001256778899998751   02489999877


Q ss_pred             Cch-hHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          115 DAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       115 ~p~-~~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      ++. .+.+.+...   ++.|..+|..+++.. ....++.+..++.++.++-+|++
T Consensus        77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~l~~~l~~~g~~~v~~pv~  130 (474)
T 2iz1_A           77 QAGAATDATIKSLLPLLDIGDILIDGGNTHF-PDTMRRNAELADSGINFIGTGVS  130 (474)
T ss_dssp             CTTHHHHHHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHTTTSSCEEEEEEEC
T ss_pred             cCchHHHHHHHHHHhhCCCCCEEEECCCCCH-HHHHHHHHHHHHCCCeEECCCCC
Confidence            764 455555433   345666666666653 33455666666667766655654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.72  E-value=0.00054  Score=61.50  Aligned_cols=102  Identities=17%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCcCCCCcc--eecCHHHHHhcccccC-CccE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSK-ARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v~~dl~~~l~~~~~~~-~~DV  109 (300)
                      |+||+|+|+ |.||+.+++.+.+. ++  +++ ++|++.  .....+    .+.|+.  .++|+++++      . ++|+
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~-g~~~~V~-~~d~~~--~~~~~~----~~~g~~~~~~~~~~~~~------~~~aDv   65 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRS-GFKGKIY-GYDINP--ESISKA----VDLGIIDEGTTSIAKVE------DFSPDF   65 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHT-TCCSEEE-EECSCH--HHHHHH----HHTTSCSEEESCGGGGG------GTCCSE
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhc-CCCcEEE-EEeCCH--HHHHHH----HHCCCcccccCCHHHHh------cCCCCE
Confidence            468999997 99999999988753 45  655 467542  111111    123432  356777776      4 7899


Q ss_pred             EEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHh
Q 022250          110 VIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFC  152 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a  152 (300)
                      ||.+++|....+.+.....   .+. +|+-+++......+.+.+..
T Consensus        66 Vilavp~~~~~~v~~~l~~~l~~~~-iv~~~~~~~~~~~~~l~~~l  110 (281)
T 2g5c_A           66 VMLSSPVRTFREIAKKLSYILSEDA-TVTDQGSVKGKLVYDLENIL  110 (281)
T ss_dssp             EEECSCHHHHHHHHHHHHHHSCTTC-EEEECCSCCTHHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHHHHHhhCCCCc-EEEECCCCcHHHHHHHHHhc
Confidence            9999988877776655433   344 44433333323334455443

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.72  E-value=2.9e-05  Score=72.09  Aligned_cols=123  Identities=12%  Similarity=0.189  Sum_probs=72.4

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCc-----CCCCcceecCHHHHHhcccccC
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-----QPLEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~-----~~~gv~v~~dl~~~l~~~~~~~  105 (300)
                      -|++||+|+|+ |.||..++..+.+ .+.++. +++++.  ..+..+.  |..     ...++.+++|+++ +      .
T Consensus        12 ~~~~kI~iIG~-G~mG~ala~~L~~-~G~~V~-~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~------~   79 (335)
T 1z82_A           12 HMEMRFFVLGA-GSWGTVFAQMLHE-NGEEVI-LWARRK--EIVDLINVSHTSPYVEESKITVRATNDLEE-I------K   79 (335)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHHHHSCBTTBTTCCCCSEEESCGGG-C------C
T ss_pred             ccCCcEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHHHhCCcccCCCCeeeEEEeCCHHH-h------c
Confidence            36799999998 9999999998875 467754 566532  1111111  100     0013566778877 5      4


Q ss_pred             CccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhh---CCCeEEEcCCCcH
Q 022250          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK---ASMGCLIAPTLSI  167 (300)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~---~~i~iv~a~N~Si  167 (300)
                      ++|+||-+..+..+.+.+......+..+|.-+.|++.++.+.+.+...+   ...+++..||+..
T Consensus        80 ~aDvVil~vk~~~~~~v~~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~  144 (335)
T 1z82_A           80 KEDILVIAIPVQYIREHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAE  144 (335)
T ss_dssp             TTEEEEECSCGGGHHHHHTTCSSCCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHH
T ss_pred             CCCEEEEECCHHHHHHHHHHhCcCCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHH
Confidence            7899998887766666654322245556655557665332223322221   2357788899754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.70  E-value=0.00016  Score=66.82  Aligned_cols=98  Identities=11%  Similarity=0.064  Sum_probs=65.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC----cEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG----MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~----~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      +|||+|+|+ |.||..++..+.+. +    .++. ++|++.....+..+.    +.|+.+.++..+++.      ++|+|
T Consensus        22 ~mkI~iIG~-G~mG~ala~~L~~~-G~~~~~~V~-v~~r~~~~~~~~~l~----~~G~~~~~~~~e~~~------~aDvV   88 (322)
T 2izz_A           22 SMSVGFIGA-GQLAFALAKGFTAA-GVLAAHKIM-ASSPDMDLATVSALR----KMGVKLTPHNKETVQ------HSDVL   88 (322)
T ss_dssp             CCCEEEESC-SHHHHHHHHHHHHT-TSSCGGGEE-EECSCTTSHHHHHHH----HHTCEEESCHHHHHH------HCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCCcceEE-EECCCccHHHHHHHH----HcCCEEeCChHHHhc------cCCEE
Confidence            479999998 99999999988754 3    5554 566643101222221    346777778888774      68999


Q ss_pred             EEcCCchhHHHHHHHHHHc---CCCEEEeCCCCCHHHH
Q 022250          111 IDFTDASTVYDNVKQATAF---GMRSVVYVPHIQLETV  145 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~---G~~vVigTTG~~~e~~  145 (300)
                      |-+..|..+.+.+......   +.-+|.-++|++.+++
T Consensus        89 ilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l  126 (322)
T 2izz_A           89 FLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSI  126 (322)
T ss_dssp             EECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHH
T ss_pred             EEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHH
Confidence            9898888887777654432   4434444468876543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.69  E-value=0.00032  Score=61.10  Aligned_cols=94  Identities=14%  Similarity=0.058  Sum_probs=59.1

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      +++||+|+|+ |+||+.+++.+.+ .++++. ++|++.  ..+..+.    +.++.++ ++++++      .++|+||.+
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~-~g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~------~~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVG-SGFKVV-VGSRNP--KRTARLF----PSAAQVT-FQEEAV------SSPEVIFVA   90 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHH-TTCCEE-EEESSH--HHHHHHS----BTTSEEE-EHHHHT------TSCSEEEEC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCcee-cHHHHH------hCCCEEEEC
Confidence            3579999997 9999999998875 466765 466542  1222222    2355555 777777      379999988


Q ss_pred             CCchhHHHHH--HHHHHcCCCEEEeCCCCCHHH
Q 022250          114 TDASTVYDNV--KQATAFGMRSVVYVPHIQLET  144 (300)
Q Consensus       114 T~p~~~~~~~--~~al~~G~~vVigTTG~~~e~  144 (300)
                      +.+....+.+  ...+ .+..+|.-++|.+.+.
T Consensus        91 v~~~~~~~v~~l~~~~-~~~~vv~~s~g~~~~~  122 (215)
T 2vns_A           91 VFREHYSSLCSLSDQL-AGKILVDVSNPTEQEH  122 (215)
T ss_dssp             SCGGGSGGGGGGHHHH-TTCEEEECCCCCHHHH
T ss_pred             CChHHHHHHHHHHHhc-CCCEEEEeCCCccccc
Confidence            8765433332  2233 5666666666876443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.65  E-value=0.00033  Score=68.63  Aligned_cols=123  Identities=9%  Similarity=0.050  Sum_probs=76.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ++||+|+|+ |.||+.++..+.+ .++++ .++|++.  ..+..+.. .....++..+.|++++++.+   .++|+||-+
T Consensus         2 ~m~IgvIG~-G~mG~~lA~~La~-~G~~V-~v~dr~~--~~~~~l~~~~~~g~gi~~~~~~~e~v~~l---~~aDvVila   73 (482)
T 2pgd_A            2 QADIALIGL-AVMGQNLILNMND-HGFVV-CAFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSKL---KKPRRIILL   73 (482)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHHB---CSSCEEEEC
T ss_pred             CCeEEEECh-HHHHHHHHHHHHH-CCCeE-EEEeCCH--HHHHHHHhccccCCCeEEeCCHHHHHhhc---cCCCEEEEe
Confidence            368999997 9999999999875 46775 4677643  22222221 00004567788999887310   378999977


Q ss_pred             CCch-hHHHHHHH---HHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          114 TDAS-TVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       114 T~p~-~~~~~~~~---al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      .++. .+.+.+..   .++.|..+|..+++... ...++.+..++.++.++-.|++.
T Consensus        74 Vp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~-~~~~l~~~l~~~g~~~v~~pv~g  129 (482)
T 2pgd_A           74 VKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYR-DTMRRCRDLKDKGILFVGSGVSG  129 (482)
T ss_dssp             SCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEEEEES
T ss_pred             CCChHHHHHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHHHHcCCeEeCCCCCC
Confidence            7664 45555543   33456666666667643 33445555555667666566543

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.63  E-value=0.00028  Score=69.25  Aligned_cols=122  Identities=9%  Similarity=0.035  Sum_probs=75.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|+ |.||+.++..+.+ .+++++ ++|++.  ..+..+.......|+..++|++++++.   ..++|+||-..
T Consensus        15 ~~~IgvIGl-G~MG~~lA~~La~-~G~~V~-v~~r~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~---l~~aDvVil~V   86 (480)
T 2zyd_A           15 KQQIGVVGM-AVMGRNLALNIES-RGYTVS-IFNRSR--EKTEEVIAENPGKKLVPYYTVKEFVES---LETPRRILLMV   86 (480)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHT-TTCCEE-EECSSH--HHHHHHHHHSTTSCEEECSSHHHHHHT---BCSSCEEEECS
T ss_pred             CCeEEEEcc-HHHHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHHhhCCCCCeEEeCCHHHHHhC---CCCCCEEEEEC
Confidence            678999998 9999999999875 577764 577642  222222210000257778899998751   02489999777


Q ss_pred             Cc-hhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          115 DA-STVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       115 ~p-~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      ++ ..+.+.+.....   .|.-+|..+++... ...++.+..++.++..+-+|++
T Consensus        87 p~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~-~t~~l~~~l~~~g~~~v~~pv~  140 (480)
T 2zyd_A           87 KAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQ-DTIRRNRELSAEGFNFIGTGVS  140 (480)
T ss_dssp             CSSSHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHHHHCCCCeeCCccc
Confidence            66 356666654433   45556666677643 3344556555556666655553

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.62  E-value=0.00023  Score=69.67  Aligned_cols=122  Identities=11%  Similarity=0.042  Sum_probs=72.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCc-CCCCcceecCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME-QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||+|+|+ |.||+.++..+.+ .++++ .++|++.  ..+..+.   |.. ...++..++|++++++.   ..++|+||
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~-~G~~V-~v~dr~~--~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~---l~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAE-KGFKV-AVFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAAS---LKKPRKAL   73 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHH-TTCCE-EEECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHH---BCSSCEEE
T ss_pred             CEEEEECh-HHHHHHHHHHHHH-CCCEE-EEEeCCH--HHHHHHHHhcCCCCCCCCeEEECCHHHHHhc---ccCCCEEE
Confidence            58999997 9999999999875 46765 4677642  1122221   100 00125667899888741   02589999


Q ss_pred             EcCCch-hHHHHHHH---HHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          112 DFTDAS-TVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       112 DfT~p~-~~~~~~~~---al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      .+.++. .+.+.+..   .++.|..+|..++|... ...++.+..++.++..+-+|+++
T Consensus        74 laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~-~~~~l~~~l~~~g~~~v~~pv~g  131 (478)
T 1pgj_A           74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFK-DQGRRAQQLEAAGLRFLGMGISG  131 (478)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHH-HHHHHHHHHHTTTCEEEEEEEES
T ss_pred             EecCChHHHHHHHHHHHhhCCCCCEEEECCCCChH-HHHHHHHHHHHCCCeEEEeeccC
Confidence            877664 45555443   34456666666667643 33455555655566655455543

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=97.58  E-value=0.00015  Score=68.10  Aligned_cols=96  Identities=21%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhh--c--Cc-CCCCcceec--C
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVC--D--ME-QPLEIPVMS--D   93 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~~~~~--g--~~-~~~gv~v~~--d   93 (300)
                      +||+|+|+ |++|+.+++++.++  |++||+++-|..             ..|+-.+++.  +  +. ....++++.  |
T Consensus         1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d   79 (332)
T 1hdg_O            1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (332)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence            58999999 99999999999988  999999988731             1121100000  0  00 001234442  4


Q ss_pred             HHHH-HhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEe
Q 022250           94 LTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (300)
Q Consensus        94 l~~~-l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVig  136 (300)
                      ++++ ..    +.++|+|+++|......+.+...++.|.. +||-
T Consensus        80 p~~l~w~----~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId  120 (332)
T 1hdg_O           80 PSKLPWK----DLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT  120 (332)
T ss_dssp             GGGSCHH----HHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEES
T ss_pred             hHHCccc----ccCCCEEEECCccchhHHHHHHHHHcCCcEEEEe
Confidence            4443 11    02689999999888889999999999973 4443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.57  E-value=0.00081  Score=65.18  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=69.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCc-------------CCCCcceecCHHHHHhc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DME-------------QPLEIPVMSDLTMVLGS  100 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~-------------~~~gv~v~~dl~~~l~~  100 (300)
                      +|||+|+|+ |.||..++..+.+  ++++++ +|.+.  ..+..+. |..             ...++..++|++++++ 
T Consensus        36 ~mkIaVIGl-G~mG~~lA~~La~--G~~V~~-~D~~~--~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~-  108 (432)
T 3pid_A           36 FMKITISGT-GYVGLSNGVLIAQ--NHEVVA-LDIVQ--AKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR-  108 (432)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHT--TSEEEE-ECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT-
T ss_pred             CCEEEEECc-CHHHHHHHHHHHc--CCeEEE-EecCH--HHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh-
Confidence            589999997 9999999998774  888775 67532  1111111 000             0124667789988884 


Q ss_pred             ccccCCccEEEEcCCch-----------hHHHHHHHH--HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          101 ISQSKARAVVIDFTDAS-----------TVYDNVKQA--TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       101 ~~~~~~~DVVIDfT~p~-----------~~~~~~~~a--l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                           ++|+||.+++..           .+.+.++..  ++.|.-+|..+| ..+...+++.+...+  ..++++|-|
T Consensus       109 -----~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~iVV~~ST-v~pgtt~~l~~~l~~--~~v~~sPe~  178 (432)
T 3pid_A          109 -----NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKST-IPVGFTRDIKERLGI--DNVIFSPEF  178 (432)
T ss_dssp             -----TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHHHCTTSEEEECSC-CCTTHHHHHHHHHTC--CCEEECCCC
T ss_pred             -----CCCEEEEeCCCccccccccccHHHHHHHHHHHHhcCCCcEEEEeCC-CChHHHHHHHHHHhh--ccEeecCcc
Confidence                 789999876432           233222222  555665665555 222333445555554  367889987

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.00064  Score=66.98  Aligned_cols=121  Identities=11%  Similarity=0.020  Sum_probs=75.2

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |..||+|+|+ |.||+.++..+.+ .+++++ ++|++.  ..+..+.. .....++..++|++++++.   ..++|+||-
T Consensus         9 ~~~~IgvIGl-G~MG~~lA~~La~-~G~~V~-v~dr~~--~~~~~l~~~~~~~~gi~~~~s~~e~v~~---l~~aDvVil   80 (497)
T 2p4q_A            9 MSADFGLIGL-AVMGQNLILNAAD-HGFTVC-AYNRTQ--SKVDHFLANEAKGKSIIGATSIEDFISK---LKRPRKVML   80 (497)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSSS--HHHHHHHHTTTTTSSEECCSSHHHHHHT---SCSSCEEEE
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHHcccccCCCeEEeCCHHHHHhc---CCCCCEEEE
Confidence            4578999997 9999999999875 477764 677653  22222321 0000467777899998751   024899997


Q ss_pred             cCCc-hhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          113 FTDA-STVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       113 fT~p-~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      ..++ ..+.+.+.....   .|.-+|..+++... ...++.+..++.++..+-+|
T Consensus        81 ~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~-~~~~l~~~l~~~g~~~v~~p  134 (497)
T 2p4q_A           81 LVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFP-DSNRRYEELKKKGILFVGSG  134 (497)
T ss_dssp             CCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEEE
T ss_pred             EcCChHHHHHHHHHHHHhCCCCCEEEECCCCChh-HHHHHHHHHHHcCCceeCCC
Confidence            7766 355666654433   35556656666543 34455555555666655444

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.55  E-value=0.00059  Score=63.14  Aligned_cols=103  Identities=16%  Similarity=0.127  Sum_probs=64.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHH-HHhcccccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTM-VLGSISQSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~-~l~~~~~~~~~DV  109 (300)
                      ++||+|+|+ |.||+.+++.+.+ .++  +++ ++|++.  .......    +.|+  ..++|+++ ++      .++|+
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~-~G~~~~V~-~~dr~~--~~~~~a~----~~G~~~~~~~~~~~~~~------~~aDv   97 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRR-SGFKGKIY-GYDINP--ESISKAV----DLGIIDEGTTSIAKVED------FSPDF   97 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHH-TTCCSEEE-EECSCH--HHHHHHH----HTTSCSEEESCTTGGGG------GCCSE
T ss_pred             CCEEEEEee-CHHHHHHHHHHHh-CCCCCEEE-EEECCH--HHHHHHH----HCCCcchhcCCHHHHhh------ccCCE
Confidence            479999997 9999999998875 455  665 467642  1111111    2343  34678887 66      37999


Q ss_pred             EEEcCCchhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHHh
Q 022250          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFC  152 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~a  152 (300)
                      ||.++++....+.+......  .-.+|+-.++......+.+.+..
T Consensus        98 Vilavp~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l  142 (314)
T 3ggo_A           98 VMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL  142 (314)
T ss_dssp             EEECSCGGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhc
Confidence            99999888877776655442  12355444444333344555443

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=97.55  E-value=0.0002  Score=67.19  Aligned_cols=98  Identities=21%  Similarity=0.187  Sum_probs=62.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCcchhh--hhcCc---CCCCcceec-
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGEDIGM--VCDME---QPLEIPVMS-   92 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~d~~~--~~g~~---~~~gv~v~~-   92 (300)
                      |+||+|+|+ |++||.+.+++.++   +++|+|++-|..             ..|+--++  +-|-.   ....+.++. 
T Consensus         1 ~ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~   79 (335)
T 1obf_O            1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN   79 (335)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred             CcEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEc
Confidence            479999999 99999999999888   899999998731             11110000  00000   001233432 


Q ss_pred             -CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEe
Q 022250           93 -DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (300)
Q Consensus        93 -dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVig  136 (300)
                       |++++-=   .+.++|+|+++|......+.+..++++|.. ||+.
T Consensus        80 ~dp~~~~w---~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviS  122 (335)
T 1obf_O           80 RNPAQLPW---GALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIIS  122 (335)
T ss_dssp             SCGGGSCT---TTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEES
T ss_pred             CCcccCCc---cccCCCEEEEccCccccHHHHHHHHHcCCCEEEEC
Confidence             4443310   013789999888878888889999999975 4553

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.54  E-value=0.00013  Score=68.70  Aligned_cols=124  Identities=16%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhhhh----------cCcCCCCcceecC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGMVC----------DMEQPLEIPVMSD   93 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-------~eLvg~vd~~~~--g~-d~~~~~----------g~~~~~gv~v~~d   93 (300)
                      ||+||+|+|+ |.||..++..+.+. +       .++. +++++..  ++ .+..+.          |..-+.++..++|
T Consensus        20 ~~~kI~iIGa-G~mG~alA~~L~~~-G~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~   96 (375)
T 1yj8_A           20 GPLKISILGS-GNWASAISKVVGTN-AKNNYLFENEVR-MWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSD   96 (375)
T ss_dssp             SCBCEEEECC-SHHHHHHHHHHHHH-HHHCTTBCSCEE-EECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHc-CCccCCCCCeEE-EEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECC
Confidence            5689999998 99999999988753 3       5544 4565421  00 111111          1000124566778


Q ss_pred             HHHHHhcccccCCccEEEEcCCchhHHHHHHHHHH-------cCCCEEEeCCCCCH-----HHHHH-HHHHhhhCCCeEE
Q 022250           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-------FGMRSVVYVPHIQL-----ETVSA-LSAFCDKASMGCL  160 (300)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~-------~G~~vVigTTG~~~-----e~~~~-L~~~a~~~~i~iv  160 (300)
                      +++++      .++|+||-+.++..+.+.+.....       .+..+|.-+.|++.     +...+ +.+..- ...+++
T Consensus        97 ~~ea~------~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~  169 (375)
T 1yj8_A           97 LASVI------NDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN-IPCSAL  169 (375)
T ss_dssp             THHHH------TTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS-SCEEEE
T ss_pred             HHHHH------cCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC-CCEEEE
Confidence            88877      378999988777666666654433       24445555557654     12222 222211 236778


Q ss_pred             EcCCCcH
Q 022250          161 IAPTLSI  167 (300)
Q Consensus       161 ~a~N~Si  167 (300)
                      ..||+..
T Consensus       170 ~gp~~a~  176 (375)
T 1yj8_A          170 SGANIAM  176 (375)
T ss_dssp             ECSCCHH
T ss_pred             eCCchHH
Confidence            8899865

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=97.52  E-value=0.00026  Score=66.37  Aligned_cols=154  Identities=20%  Similarity=0.207  Sum_probs=91.0

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhh--cCc---CCCCccee--c
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVC--DME---QPLEIPVM--S   92 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~--g~~---~~~gv~v~--~   92 (300)
                      +|++||+|+|. ||+||.+.+++.+.+++|+|++-|...             .|+=-+++.  |-.   ....++++  .
T Consensus         2 ~m~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~   80 (338)
T 3lvf_P            2 SMAVKVAINGF-GRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEP   80 (338)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CccEEEEEECC-CcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEec
Confidence            57899999998 999999999998888999999876210             011000000  000   00123343  3


Q ss_pred             CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCC----------CCCHHHHHHHHHHhhhCCCeEEE
Q 022250           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP----------HIQLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTT----------G~~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      |++++-=   .+..+|+|++.|-.....+.+...++.|.. |||..|          |.+.+.++      .+  -.++ 
T Consensus        81 dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~------~~--~~II-  148 (338)
T 3lvf_P           81 DASKLPW---KDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELD------GS--ETVV-  148 (338)
T ss_dssp             CGGGSCT---TTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCC------SC--CSEE-
T ss_pred             ccccCCc---cccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCCCCCCEEeccCCHHHcC------cc--CCeE-
Confidence            4444310   024789999988888888999999999965 455433          23333321      12  2444 


Q ss_pred             cCCCcHHHHHHHHHHHHhccCCCCeE---EEEccC----C-CCCCCch
Q 022250          162 APTLSIGSILLQQAAISASFHYKNVE---IVESRP----N-ARDFPSP  201 (300)
Q Consensus       162 a~N~SiGv~ll~~~a~~~~~~~~die---IiE~Hh----~-K~DaPSG  201 (300)
                       +|=|--.|-|.-+++.+-.. |.|+   +.-.|-    + -.|.|++
T Consensus       149 -SNasCTTn~Lap~lkvL~d~-fGI~~g~mTTvha~T~~q~~~D~~~~  194 (338)
T 3lvf_P          149 -SGASCTTNSLAPVAKVLNDD-FGLVEGLMTTIHAYTGDQNTQDAPHR  194 (338)
T ss_dssp             -ECCCHHHHHHHHHHHHHHHH-HCEEEEEEEEEEECCTTSCSSSCCCT
T ss_pred             -ecCchhhhhhHHHHHHHHHh-cCEEEEEEeeeccccchhhhhcCCcc
Confidence             66666677666666666432 3333   233363    2 3688987

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=97.50  E-value=0.00097  Score=65.26  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=46.8

Q ss_pred             CCCCcceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhh-cCc--------------CCCCcceecCH
Q 022250           31 PPQSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVC-DME--------------QPLEIPVMSDL   94 (300)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~-g~~--------------~~~gv~v~~dl   94 (300)
                      ++.|||||+|+|+ |.||..++..+.+. +++++++ +|.+.  ..+..+. |..              ...++..++|+
T Consensus         5 ~~~~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~-~D~~~--~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~   80 (481)
T 2o3j_A            5 VFGKVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTV-VDMNT--AKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDI   80 (481)
T ss_dssp             SSCCCCEEEEECC-STTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCH
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCH
Confidence            3345689999997 99999999988865 3788775 66431  1111111 000              01134556787


Q ss_pred             HHHHhcccccCCccEEEEcC
Q 022250           95 TMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++++.      ++|+||.+.
T Consensus        81 ~~~~~------~aDvvii~V   94 (481)
T 2o3j_A           81 PKAIA------EADLIFISV   94 (481)
T ss_dssp             HHHHH------HCSEEEECC
T ss_pred             HHHhh------cCCEEEEec
Confidence            77764      689999774

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.44  E-value=0.00086  Score=59.44  Aligned_cols=90  Identities=16%  Similarity=0.171  Sum_probs=58.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcc--------------hhhhhcCcCCCCcceecCHHHHHh
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED--------------IGMVCDMEQPLEIPVMSDLTMVLG   99 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d--------------~~~~~g~~~~~gv~v~~dl~~~l~   99 (300)
                      +++||+|+|+ |.||+.+++.+.+ .++++. ++|++.  ..              ...+.   ...+...+.|++++++
T Consensus        18 ~~~kIgiIG~-G~mG~alA~~L~~-~G~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~   89 (245)
T 3dtt_A           18 QGMKIAVLGT-GTVGRTMAGALAD-LGHEVT-IGTRDP--KATLARAEPDAMGAPPFSQWL---PEHPHVHLAAFADVAA   89 (245)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHTCC-------CCHHHHG---GGSTTCEEEEHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCh--hhhhhhhhhhhhcchhhhHHH---hhcCceeccCHHHHHh
Confidence            4689999997 9999999999875 477866 467542  11              12222   1234445678888874


Q ss_pred             cccccCCccEEEEcCCchhHHHHHHHH---HHcCCCEEEeC
Q 022250          100 SISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYV  137 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigT  137 (300)
                            ++|+||-+.++....+.+...   .-.|.-+|..+
T Consensus        90 ------~aDvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s  124 (245)
T 3dtt_A           90 ------GAELVVNATEGASSIAALTAAGAENLAGKILVDIA  124 (245)
T ss_dssp             ------HCSEEEECSCGGGHHHHHHHHCHHHHTTSEEEECC
T ss_pred             ------cCCEEEEccCcHHHHHHHHHhhhhhcCCCEEEECC
Confidence                  689999888887766655432   11566555555

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.43  E-value=0.00084  Score=60.11  Aligned_cols=99  Identities=13%  Similarity=0.201  Sum_probs=63.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |||+|+|+ |.||+.+++.+.+ .+++++. +|++.  .....+.    +.|+  ..+++++++ .      ++|+||.+
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~-~g~~V~~-~~~~~--~~~~~~~----~~g~~~~~~~~~~~~-~------~~D~vi~a   64 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRR-RGHYLIG-VSRQQ--STCEKAV----ERQLVDEAGQDLSLL-Q------TAKIIFLC   64 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGGGG-T------TCSEEEEC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----hCCCCccccCCHHHh-C------CCCEEEEE
Confidence            58999997 9999999998875 4677654 56542  1122221    2333  246677776 4      68999989


Q ss_pred             CCchhHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHH
Q 022250          114 TDASTVYDNVKQATAF---GMRSVVYVPHIQLETVSALSAF  151 (300)
Q Consensus       114 T~p~~~~~~~~~al~~---G~~vVigTTG~~~e~~~~L~~~  151 (300)
                      ++|..+.+.+......   +. +|+-+.+.+....+.+.+.
T Consensus        65 v~~~~~~~~~~~l~~~~~~~~-~vv~~~~~~~~~~~~~~~~  104 (279)
T 2f1k_A           65 TPIQLILPTLEKLIPHLSPTA-IVTDVASVKTAIAEPASQL  104 (279)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTC-EEEECCSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCC-EEEECCCCcHHHHHHHHHH
Confidence            8888777777655432   33 4554555665555555444

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.42  E-value=0.00049  Score=63.60  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=58.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCc---C----CCCc-ceecCHHHHHhcccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME---Q----PLEI-PVMSDLTMVLGSISQ  103 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g~~---~----~~gv-~v~~dl~~~l~~~~~  103 (300)
                      +|||+|+|+ |.||+.++..+.+ .++++. ++|++.  ..+..+.   +..   .    ...+ ..++|+++++     
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~-~g~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   73 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLAL-KGQSVL-AWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----   73 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-----
T ss_pred             cCeEEEECC-CHHHHHHHHHHHh-CCCEEE-EEeCCH--HHHHHHHhcCCeEEeccccccccccceecCCHHHHH-----
Confidence            479999998 9999999998875 467754 566532  1111111   100   0    0011 2567888877     


Q ss_pred             cCCccEEEEcCCchhHHHHHHHHH---HcCCCEEEeCCC
Q 022250          104 SKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPH  139 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTTG  139 (300)
                       .++|+||.++++..+.+.+....   +.+..+|+. .|
T Consensus        74 -~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~-~~  110 (359)
T 1bg6_A           74 -KDADVILIVVPAIHHASIAANIASYISEGQLIILN-PG  110 (359)
T ss_dssp             -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES-SC
T ss_pred             -hcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc-CC
Confidence             37999998888877777666553   345656655 55

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.39  E-value=0.0005  Score=59.08  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=28.4

Q ss_pred             Ccce-EEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           34 SNIK-VIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        34 ~~ik-V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |||| |.|.|++|.+|+.+++.+.+.+++++++..
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~   37 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYG   37 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEe
Confidence            3556 999999999999999998855788887654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.38  E-value=0.0011  Score=64.38  Aligned_cols=125  Identities=12%  Similarity=0.159  Sum_probs=74.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCc---------------CCCCcceecCHHHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DME---------------QPLEIPVMSDLTMVL   98 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~---------------~~~gv~v~~dl~~~l   98 (300)
                      .+||+|+|. |.||..++..+.+ .++++++ +|.+.  ..+..+. |..               .+..+..++|+++++
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~-~G~~V~~-~D~~~--~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~   82 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSD-FGHEVVC-VDKDA--RKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGV   82 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCS--TTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHH
Confidence            489999997 9999999998875 5888775 66542  1122111 100               012356678998887


Q ss_pred             hcccccCCccEEEEc--CCch---------hHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhh----CCCeEE
Q 022250           99 GSISQSKARAVVIDF--TDAS---------TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGCL  160 (300)
Q Consensus        99 ~~~~~~~~~DVVIDf--T~p~---------~~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~----~~i~iv  160 (300)
                      +      ++|++|.+  |+++         .+.+.++..   ++.|.-+|..+| ..+...+++.+..++    ...+++
T Consensus        83 ~------~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pgtt~~l~~~l~e~~~~~d~~v~  155 (446)
T 4a7p_A           83 K------DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKST-VPVGTGDEVERIIAEVAPNSGAKVV  155 (446)
T ss_dssp             T------TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSC-CCTTHHHHHHHHHHHHSTTSCCEEE
T ss_pred             h------cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCC-CCchHHHHHHHHHHHhCCCCCceEE
Confidence            4      78999977  4432         244444433   345555666554 333333333333322    358999


Q ss_pred             EcCCCcHHHHH
Q 022250          161 IAPTLSIGSIL  171 (300)
Q Consensus       161 ~a~N~SiGv~l  171 (300)
                      .+|+|.--.+.
T Consensus       156 ~~Pe~a~eG~a  166 (446)
T 4a7p_A          156 SNPEFLREGAA  166 (446)
T ss_dssp             ECCCCCCTTSH
T ss_pred             eCcccccccch
Confidence            99998754443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00058  Score=65.38  Aligned_cols=136  Identities=13%  Similarity=0.126  Sum_probs=76.4

Q ss_pred             EeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCC----c--EEEEEEecC--CCCc-----------chhhhhcCcCCC
Q 022250           26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG----M--EVAGAIDSH--SVGE-----------DIGMVCDMEQPL   86 (300)
Q Consensus        26 ~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~----~--eLvg~vd~~--~~g~-----------d~~~~~g~~~~~   86 (300)
                      +++..+.+.++||+|+|+ |.+|.+++..+.+.-.    .  .-|-.+.++  ..++           +...+-|..-+-
T Consensus        25 ~~~~~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~  103 (391)
T 4fgw_A           25 SVSLKAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPD  103 (391)
T ss_dssp             --------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCS
T ss_pred             cccccccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCC
Confidence            344444455789999998 9999999998875311    0  123333322  1111           111222332334


Q ss_pred             CcceecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHH---HHcCCCEEEeCCCCCH--H---HH-HHHHHHhhhCCC
Q 022250           87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL--E---TV-SALSAFCDKASM  157 (300)
Q Consensus        87 gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTTG~~~--e---~~-~~L~~~a~~~~i  157 (300)
                      ++.+++|++++++      ++|+||-..+.....+.+...   +..++++|..+-|+..  .   -+ +.+.+.-. ..+
T Consensus       104 ~i~~t~dl~~al~------~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~~  176 (391)
T 4fgw_A          104 NLVANPDLIDSVK------DVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQC  176 (391)
T ss_dssp             SEEEESCHHHHHT------TCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CEE
T ss_pred             CcEEeCCHHHHHh------cCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhC-ccc
Confidence            5777899999984      789998555555555665554   3456778888778741  1   11 22333221 236


Q ss_pred             eEEEcCCCcHHH
Q 022250          158 GCLIAPTLSIGS  169 (300)
Q Consensus       158 ~iv~a~N~SiGv  169 (300)
                      .++-.|||+-=|
T Consensus       177 ~vLsGPs~A~EV  188 (391)
T 4fgw_A          177 GALSGANIATEV  188 (391)
T ss_dssp             EEEECSCCHHHH
T ss_pred             eeccCCchHHHh
Confidence            678889998665

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=97.36  E-value=0.00034  Score=65.74  Aligned_cols=135  Identities=18%  Similarity=0.158  Sum_probs=79.9

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhh--cCc---CCCCccee--c
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVC--DME---QPLEIPVM--S   92 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~~~~~--g~~---~~~gv~v~--~   92 (300)
                      ++|+||+|+|. ||+||.+.+++.+.+++|+|++-|+..             .|+=-+++.  |-.   ....++++  .
T Consensus         2 ~~~~kv~INGf-GrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~   80 (345)
T 4dib_A            2 NAMTRVAINGF-GRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNR   80 (345)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCS
T ss_pred             CccEEEEEECC-CcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecC
Confidence            45799999998 999999999998888999999877411             010000000  000   00123343  3


Q ss_pred             CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCC----------CCCHHHHHHHHHHhhhCCCeEEE
Q 022250           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP----------HIQLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTT----------G~~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      |++++-=   .+.++|+|++.|-.....+.+...++.|.. |||..|          |.+.+.++   .  .+  -.++ 
T Consensus        81 dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~---~--~~--~~II-  149 (345)
T 4dib_A           81 DPKELPW---TDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLD---I--TK--HTVI-  149 (345)
T ss_dssp             CGGGSCT---TTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCC---T--TT--CSEE-
T ss_pred             ChhhCCc---cccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHcC---c--cc--CeEE-
Confidence            4444310   024789999988887888899999999965 555443          22332211   0  01  2344 


Q ss_pred             cCCCcHHHHHHHHHHHHhc
Q 022250          162 APTLSIGSILLQQAAISAS  180 (300)
Q Consensus       162 a~N~SiGv~ll~~~a~~~~  180 (300)
                       +|=|--.|-|.-+++.+-
T Consensus       150 -SNaSCTTn~Lap~lkvL~  167 (345)
T 4dib_A          150 -SNASCTTNCLAPVVKVLD  167 (345)
T ss_dssp             -ECCCHHHHHHHHHHHHHH
T ss_pred             -ECCchhhhhhHHHHHHHH
Confidence             666777776666666654

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.36  E-value=0.00023  Score=63.16  Aligned_cols=100  Identities=16%  Similarity=0.184  Sum_probs=61.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |||+|+|+ |.||+.++..+.+. + .++ .++|++.  ..+..+.   ..+|+.+++|+++++       ++|+||.++
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~-g~~~v-~~~~r~~--~~~~~~~---~~~g~~~~~~~~~~~-------~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQ-GGYRI-YIANRGA--EKRERLE---KELGVETSATLPELH-------SDDVLILAV   65 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-CSCEE-EEECSSH--HHHHHHH---HHTCCEEESSCCCCC-------TTSEEEECS
T ss_pred             CEEEEECc-hHHHHHHHHHHHHC-CCCeE-EEECCCH--HHHHHHH---HhcCCEEeCCHHHHh-------cCCEEEEEe
Confidence            58999998 99999999988754 4 554 4577542  1222222   124666666665542       579999888


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeC-CCCCHHHHHHHHHHhhh
Q 022250          115 DASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDK  154 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigT-TG~~~e~~~~L~~~a~~  154 (300)
                      +|..+.+.+......+. +|+-. .|++.+   .|.+...+
T Consensus        66 ~~~~~~~v~~~l~~~~~-ivv~~~~g~~~~---~l~~~~~~  102 (263)
T 1yqg_A           66 KPQDMEAACKNIRTNGA-LVLSVAAGLSVG---TLSRYLGG  102 (263)
T ss_dssp             CHHHHHHHHTTCCCTTC-EEEECCTTCCHH---HHHHHTTS
T ss_pred             CchhHHHHHHHhccCCC-EEEEecCCCCHH---HHHHHcCC
Confidence            87766665543221244 44444 588764   45555443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=0.00062  Score=58.43  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=28.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      +|+||.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r   36 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALN-RGFEVTAVVR   36 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHT-TTCEEEEECS
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHH-CCCEEEEEEc
Confidence            368999999999999999999885 4688877543

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.34  E-value=0.00093  Score=62.73  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=65.4

Q ss_pred             eecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC
Q 022250           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      |+..|.  +.||+|+|+ |.||..+++.+.+. +++++ ++|++.  ......    .+.|+..++|+++++...  ..+
T Consensus         2 m~~~~~--~~kIgIIG~-G~mG~slA~~L~~~-G~~V~-~~dr~~--~~~~~a----~~~G~~~~~~~~e~~~~a--~~~   68 (341)
T 3ktd_A            2 MTTKDI--SRPVCILGL-GLIGGSLLRDLHAA-NHSVF-GYNRSR--SGAKSA----VDEGFDVSADLEATLQRA--AAE   68 (341)
T ss_dssp             ----CC--SSCEEEECC-SHHHHHHHHHHHHT-TCCEE-EECSCH--HHHHHH----HHTTCCEESCHHHHHHHH--HHT
T ss_pred             CCccCC--CCEEEEEee-cHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHH----HHcCCeeeCCHHHHHHhc--ccC
Confidence            344554  468999997 99999999998754 67765 467542  111111    235666678888877410  014


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCC-CEEEeCCCCCHHHHHHHHH
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGM-RSVVYVPHIQLETVSALSA  150 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~-~vVigTTG~~~e~~~~L~~  150 (300)
                      +|+||-.+++....+.+........ .+|+-.++...+-.+.+.+
T Consensus        69 aDlVilavP~~~~~~vl~~l~~~~~~~iv~Dv~Svk~~i~~~~~~  113 (341)
T 3ktd_A           69 DALIVLAVPMTAIDSLLDAVHTHAPNNGFTDVVSVKTAVYDAVKA  113 (341)
T ss_dssp             TCEEEECSCHHHHHHHHHHHHHHCTTCCEEECCSCSHHHHHHHHH
T ss_pred             CCEEEEeCCHHHHHHHHHHHHccCCCCEEEEcCCCChHHHHHHHH
Confidence            7999988888777766655443322 2443344444443444443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.33  E-value=0.0021  Score=53.84  Aligned_cols=132  Identities=13%  Similarity=0.047  Sum_probs=74.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e---cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (300)
                      ..+|+|+|+ |+||+.+++.+.+..+++++ ++|++.  .....+.    +.|+.+ +   ++.+.+.+ ...-.++|+|
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~-vid~~~--~~~~~~~----~~g~~~~~gd~~~~~~l~~-~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGKISL-GIEIRE--EAAQQHR----SEGRNVISGDATDPDFWER-ILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCSCEE-EEESCH--HHHHHHH----HTTCCEEECCTTCHHHHHT-BCSCCCCCEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCCeEE-EEECCH--HHHHHHH----HCCCCEEEcCCCCHHHHHh-ccCCCCCCEE
Confidence            468999998 99999999988753266766 456542  1122211    223332 2   23332211 0001468999


Q ss_pred             EEcCCchhH-HHHHHHHHHcC-CCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhc
Q 022250          111 IDFTDASTV-YDNVKQATAFG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (300)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G-~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~  180 (300)
                      |.++..+.. ...+..+.+.+ ...|+..+ -+++..+.+    ++.|+..+++|....|-.+...+.+.+.
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~~~~l----~~~G~~~vi~p~~~~a~~l~~~~~~~~~  176 (183)
T 3c85_A          110 LLAMPHHQGNQTALEQLQRRNYKGQIAAIA-EYPDQLEGL----LESGVDAAFNIYSEAGSGFARHVCKQLE  176 (183)
T ss_dssp             EECCSSHHHHHHHHHHHHHTTCCSEEEEEE-SSHHHHHHH----HHHTCSEEEEHHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCChHHHHHHHHHHHHHCCCCEEEEEE-CCHHHHHHH----HHcCCCEEEchHHHHHHHHHHHHHHhcC
Confidence            987764443 44445555555 33333332 234443333    3346778888988888777777776654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.32  E-value=0.0018  Score=59.98  Aligned_cols=123  Identities=12%  Similarity=0.125  Sum_probs=71.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhhhh----------cCcCCCCcceecCH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGMVC----------DMEQPLEIPVMSDL   94 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-------~eLvg~vd~~~~--g~-d~~~~~----------g~~~~~gv~v~~dl   94 (300)
                      ++||+|+|+ |.||..++..+.+. +       .++ -+++++..  ++ ....+.          |..-..++..++|+
T Consensus         8 ~mkI~iIG~-G~mG~~~a~~l~~~-g~~~~~~~~~V-~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVGS-GNWGSAIAKIVGGN-AAQLAQFDPRV-TMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHH-HHHCTTEEEEE-EEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhc-CCcccCCCCeE-EEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCH
Confidence            479999998 99999999988753 3       554 45665421  00 111111          00001234556788


Q ss_pred             HHHHhcccccCCccEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCH-----HHH-HHHHHHhhhCCCeEEEcCCC
Q 022250           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL-----ETV-SALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~-----e~~-~~L~~~a~~~~i~iv~a~N~  165 (300)
                      ++++      .++|+||-++++....+.+.....   .+..+|.-++|++.     +.+ +.+.+..- ...+++..||+
T Consensus        85 ~~~~------~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~  157 (354)
T 1x0v_A           85 VQAA------EDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMSVLMGANI  157 (354)
T ss_dssp             HHHH------TTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEEEEECSCC
T ss_pred             HHHH------cCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEEEEECCCc
Confidence            8877      379999988877766666654433   34556655667652     122 22332211 23567888998


Q ss_pred             cH
Q 022250          166 SI  167 (300)
Q Consensus       166 Si  167 (300)
                      +-
T Consensus       158 a~  159 (354)
T 1x0v_A          158 AS  159 (354)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=97.30  E-value=0.00048  Score=64.54  Aligned_cols=133  Identities=17%  Similarity=0.148  Sum_probs=80.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhhh--c----CcCCCCccee-
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMVC--D----MEQPLEIPVM-   91 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~~~~~--g----~~~~~gv~v~-   91 (300)
                      |++||+|+|. ||+||.+.+++.+.  +++|+|++-|+..             .|+=-+++.  |    . ....++++ 
T Consensus         1 m~~kv~INGf-GrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i-~Gk~I~v~~   78 (335)
T 3doc_A            1 MAVRVAINGF-GRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDV-GYGPIKVHA   78 (335)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEES-SSSEEEEEC
T ss_pred             CCEEEEEECC-CcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEE-CCEEEEEEe
Confidence            6799999998 99999999998876  6899999877411             011000000  0    0 00123343 


Q ss_pred             -cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCCC----------CCHHHHHHHHHHhhhCCCeE
Q 022250           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH----------IQLETVSALSAFCDKASMGC  159 (300)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTTG----------~~~e~~~~L~~~a~~~~i~i  159 (300)
                       .|++++-=   .+.++|+|++.|-.....+.+...++.|.. |||..|.          .+.+.++      .+  -.+
T Consensus        79 e~dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~~p~vV~gVN~~~~~------~~--~~I  147 (335)
T 3doc_A           79 VRNPAELPW---KEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKLT------KD--HLV  147 (335)
T ss_dssp             CSSTTSSCT---TTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCTTCSEECCTTTTGGGCC------TT--CCE
T ss_pred             ecccccccc---cccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCCCCCCEEecccCHHHhC------cc--CCe
Confidence             23333210   024789999988877788899999999964 5554442          2332211      11  234


Q ss_pred             EEcCCCcHHHHHHHHHHHHhcc
Q 022250          160 LIAPTLSIGSILLQQAAISASF  181 (300)
Q Consensus       160 v~a~N~SiGv~ll~~~a~~~~~  181 (300)
                      +  +|=|--.|-|.-+++.+-.
T Consensus       148 I--SNasCTTn~Lap~lk~L~d  167 (335)
T 3doc_A          148 I--SNASCTTNCLAPVAQVLND  167 (335)
T ss_dssp             E--ECCCHHHHHHHHHHHHHHH
T ss_pred             E--ecCchhhhhhHHhHHHHHH
Confidence            4  6777777777666666643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.29  E-value=0.0031  Score=51.58  Aligned_cols=121  Identities=12%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-c---CHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-S---DLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~---dl~~~l~~~~~~~~~DVV  110 (300)
                      ..+|+|+|+ |.||+.+++.+.+ .+.+++. +|++.  .....+.   ...++.++ .   +.+.+.+.  ...++|+|
T Consensus        19 ~~~v~IiG~-G~iG~~la~~L~~-~g~~V~v-id~~~--~~~~~~~---~~~g~~~~~~d~~~~~~l~~~--~~~~ad~V   88 (155)
T 2g1u_A           19 SKYIVIFGC-GRLGSLIANLASS-SGHSVVV-VDKNE--YAFHRLN---SEFSGFTVVGDAAEFETLKEC--GMEKADMV   88 (155)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-EESCG--GGGGGSC---TTCCSEEEESCTTSHHHHHTT--TGGGCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCH--HHHHHHH---hcCCCcEEEecCCCHHHHHHc--CcccCCEE
Confidence            368999998 9999999998875 4677664 56432  1111111   02333222 2   22222110  01368999


Q ss_pred             EEcCCchhHHHHHHH-HHH-cCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250          111 IDFTDASTVYDNVKQ-ATA-FGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (300)
Q Consensus       111 IDfT~p~~~~~~~~~-al~-~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll  172 (300)
                      |.++..+.....+.. +.. .+...++..+ +.  +..+.+    ++.|+. ++.|....+-.+.
T Consensus        89 i~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~--~~~~~l----~~~G~~-vi~p~~~~a~~l~  146 (155)
T 2g1u_A           89 FAFTNDDSTNFFISMNARYMFNVENVIARVYDP--EKIKIF----EENGIK-TICPAVLMIEKVK  146 (155)
T ss_dssp             EECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG--GGHHHH----HTTTCE-EECHHHHHHHHHH
T ss_pred             EEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH--HHHHHH----HHCCCc-EEcHHHHHHHHHH
Confidence            998876665554444 444 5666666544 33  222223    346788 8888877775443

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=97.29  E-value=0.0007  Score=63.35  Aligned_cols=152  Identities=21%  Similarity=0.212  Sum_probs=89.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-C-------------CCcchhhhh--cCc---CCCCccee--cC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-------------VGEDIGMVC--DME---QPLEIPVM--SD   93 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-------------~g~d~~~~~--g~~---~~~gv~v~--~d   93 (300)
                      |+||+|+|. ||+||.+.+++.+.+++|+|++=|+. .             .|+=-+++.  |-.   ....++++  .|
T Consensus         1 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d   79 (332)
T 3pym_A            1 MVRVAINGF-GRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERD   79 (332)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CeEEEEECC-CcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeecc
Confidence            589999998 99999999999888899999987741 0             011000000  000   00113343  24


Q ss_pred             HHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCC---------CCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP---------HIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTT---------G~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      ++++-=   .+..+|+|++.|-.....+.+...++.|.. |||..|         |.+.+.++      .+  -.++  +
T Consensus        80 p~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~------~~--~~II--S  146 (332)
T 3pym_A           80 PANLPW---GSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYT------SD--LKIV--S  146 (332)
T ss_dssp             GGGSCT---TTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCC------TT--CCEE--E
T ss_pred             cccCCc---cccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCCCCCeEeeccchhhcC------cc--ccEE--e
Confidence            443210   024789999988888888899999999965 455433         33443321      11  2344  6


Q ss_pred             CCcHHHHHHHHHHHHhccCCCCeE---EEEccC----C-CCCCCch
Q 022250          164 TLSIGSILLQQAAISASFHYKNVE---IVESRP----N-ARDFPSP  201 (300)
Q Consensus       164 N~SiGv~ll~~~a~~~~~~~~die---IiE~Hh----~-K~DaPSG  201 (300)
                      |=|--.|-|.-+++.+-.. |.|+   +.-.|.    + -.|.||+
T Consensus       147 nasCTTn~Lap~lkvL~d~-fGI~~g~mTTvha~T~~Q~~vDg~~~  191 (332)
T 3pym_A          147 NASCTTNCLAPLAKVINDA-FGIEEGLMTTVHSLTATQKTVDGPSH  191 (332)
T ss_dssp             CCCHHHHHHHHHHHHHHHH-HCEEEEEEEEEEECCTTSCSSSCCCT
T ss_pred             cCcchhhhhHHHHHHHHHh-cCeEEEEEEEEeeccccchhccCCCc
Confidence            7777777776666666432 3333   233363    2 3678875

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.28  E-value=0.0029  Score=62.17  Aligned_cols=119  Identities=11%  Similarity=0.084  Sum_probs=71.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc-CCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+||+|+|+ |.||+.++..+.+ .+++++ ++|++.  ..+..+.... ....+..+.|++++++++   ..+|+||-.
T Consensus         4 ~~kIgiIGl-G~MG~~lA~~L~~-~G~~V~-v~dr~~--~~~~~l~~~g~~g~~i~~~~s~~e~v~~l---~~aDvVil~   75 (484)
T 4gwg_A            4 QADIALIGL-AVMGQNLILNMND-HGFVVC-AFNRTV--SKVDDFLANEAKGTKVVGAQSLKEMVSKL---KKPRRIILL   75 (484)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHTB---CSSCEEEEC
T ss_pred             CCEEEEECh-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHHhcccCCCceeccCCHHHHHhhc---cCCCEEEEe
Confidence            589999997 9999999999875 477765 567653  2222222100 011233468899987521   258999977


Q ss_pred             CCch-hHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEc
Q 022250          114 TDAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (300)
Q Consensus       114 T~p~-~~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a  162 (300)
                      .++. .+.+.+...   ++.|.-+|.++|+... ...++.+..++.++..+=+
T Consensus        76 Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~-~t~~~~~~l~~~Gi~fvd~  127 (484)
T 4gwg_A           76 VKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYR-DTTRRCRDLKAKGILFVGS  127 (484)
T ss_dssp             SCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEE
T ss_pred             cCChHHHHHHHHHHHHhcCCCCEEEEcCCCCch-HHHHHHHHHHhhccccccC
Confidence            7664 455555443   3456656666666533 3334444455556655443

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.27  E-value=0.00074  Score=61.54  Aligned_cols=100  Identities=14%  Similarity=0.120  Sum_probs=56.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hh--------hh--hcCcCC------------CCccee
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IG--------MV--CDMEQP------------LEIPVM   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d-~~--------~~--~g~~~~------------~gv~v~   91 (300)
                      |.||+|+|+ |.||..++..+.+ .+++++ ++|++..-.+ +.        .+  .|.-..            ..+.++
T Consensus        15 ~~~I~VIG~-G~mG~~iA~~la~-~G~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~   91 (302)
T 1f0y_A           15 VKHVTVIGG-GLMGAGIAQVAAA-TGHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS   91 (302)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe
Confidence            468999998 9999999998875 478866 5775420000 00        00  010000            124557


Q ss_pred             cCHHHHHhcccccCCccEEEEcCCchh-H-HHHHHHHHH---cCCCEEE-eCCCCCHHH
Q 022250           92 SDLTMVLGSISQSKARAVVIDFTDAST-V-YDNVKQATA---FGMRSVV-YVPHIQLET  144 (300)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~-~-~~~~~~al~---~G~~vVi-gTTG~~~e~  144 (300)
                      +|+++++      .++|+||.+.+++. . .+.+....+   .+. +|+ -|++++.++
T Consensus        92 ~~~~~~~------~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~-iv~s~ts~i~~~~  143 (302)
T 1f0y_A           92 TDAASVV------HSTDLVVEAIVENLKVKNELFKRLDKFAAEHT-IFASNTSSLQITS  143 (302)
T ss_dssp             SCHHHHT------TSCSEEEECCCSCHHHHHHHHHHHTTTSCTTC-EEEECCSSSCHHH
T ss_pred             cCHHHhh------cCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCe-EEEECCCCCCHHH
Confidence            7888776      47999998775433 1 223332222   233 444 455887654

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=97.27  E-value=0.00077  Score=63.42  Aligned_cols=99  Identities=19%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhh--hhcCc---CCCCcceec--C
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGM--VCDME---QPLEIPVMS--D   93 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~~--~~g~~---~~~gv~v~~--d   93 (300)
                      .+||+|+|. ||+||.+.+++.+++++|||++-|+..              .|+--++  +-+-.   ....+.++.  |
T Consensus        11 ~~kv~INGf-GrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~~~~d   89 (345)
T 2b4r_O           11 ATKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD   89 (345)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred             heEEEEeCC-chHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence            689999997 999999999999999999999988210              0110000  00000   001123332  3


Q ss_pred             HHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeC
Q 022250           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYV  137 (300)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigT  137 (300)
                      ++++--   .+.++|+|+++|......+.+..+++.|.. |||..
T Consensus        90 p~~~~w---~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsa  131 (345)
T 2b4r_O           90 PSQIPW---GKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSA  131 (345)
T ss_dssp             GGGCCH---HHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESS
T ss_pred             cccCcc---cccCCCEEEECcCccccHhhHHHHHHCCCCEEEECC
Confidence            333210   002689999888777778888888998875 55543

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=97.26  E-value=0.00031  Score=65.73  Aligned_cols=91  Identities=16%  Similarity=0.102  Sum_probs=60.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVID  112 (300)
                      |||+|+|++|++|+.+++.+.  ..|..+|+...+....|+... +.|    ..+.+++ +.+   +   +  ++|+|++
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~-~~g----~~i~v~~~~~~---~---~--~~DvV~~   67 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLA-FRG----EEIPVEPLPEG---P---L--PVDLVLA   67 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEE-ETT----EEEEEEECCSS---C---C--CCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEE-EcC----ceEEEEeCChh---h---c--CCCEEEE
Confidence            589999999999999999988  567777764433322222211 101    1223322 211   1   1  5899998


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      ++......+.+..+++.|..+|.-+..
T Consensus        68 a~g~~~s~~~a~~~~~~G~~vId~s~~   94 (331)
T 2yv3_A           68 SAGGGISRAKALVWAEGGALVVDNSSA   94 (331)
T ss_dssp             CSHHHHHHHHHHHHHHTTCEEEECSSS
T ss_pred             CCCccchHHHHHHHHHCCCEEEECCCc
Confidence            888788899999999999977765443

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.26  E-value=0.0008  Score=62.26  Aligned_cols=45  Identities=20%  Similarity=0.062  Sum_probs=30.3

Q ss_pred             eeEeecCCCC---CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           24 FISCSTNPPQ---SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        24 ~~~~~~~~~~---~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ...|+-++..   +|+||.|+|++|.+|+.+++.+.+.++++++++..
T Consensus        10 ~~~~~~~~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   57 (372)
T 3slg_A           10 GTLEAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDM   57 (372)
T ss_dssp             -------------CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEES
T ss_pred             cchhhhhcCCcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeC
Confidence            4566666642   35799999999999999999998777899887654

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.25  E-value=0.00079  Score=63.82  Aligned_cols=84  Identities=14%  Similarity=0.111  Sum_probs=51.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe---cCCCCcchhhhh---cC--c--CCCC--------cc-eecCH
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVC---DM--E--QPLE--------IP-VMSDL   94 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd---~~~~g~d~~~~~---g~--~--~~~g--------v~-v~~dl   94 (300)
                      |||||+|+|+ |.||..++..+.+..+.++. +++   ++.  ..+....   |.  .  ...+        +. +++|+
T Consensus         1 ~~mkI~ViGa-G~~G~~~a~~La~~~G~~V~-~~~~~~r~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            1 MTVKVCVCGG-GNGAHTLSGLAASRDGVEVR-VLTLFADEA--ERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHTTSTTEEEE-EECCSTTHH--HHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             CCceEEEECC-CHHHHHHHHHHHhCCCCEEE-EEeCCCCcH--HHHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence            4689999998 99999999988654577766 455   311  1111111   00  0  0001        22 56788


Q ss_pred             HHHHhcccccCCccEEEEcCCchhHHHHHHHHH
Q 022250           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQAT  127 (300)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al  127 (300)
                      ++++      .++|+||.++.+....+.+....
T Consensus        77 ~~a~------~~aD~Vilav~~~~~~~v~~~l~  103 (404)
T 3c7a_A           77 EIAI------SGADVVILTVPAFAHEGYFQAMA  103 (404)
T ss_dssp             HHHH------TTCSEEEECSCGGGHHHHHHHHT
T ss_pred             HHHh------CCCCEEEEeCchHHHHHHHHHHH
Confidence            8877      37999998887777666665443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.24  E-value=0.0027  Score=51.15  Aligned_cols=129  Identities=9%  Similarity=0.055  Sum_probs=73.2

Q ss_pred             CCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccC
Q 022250           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSK  105 (300)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~  105 (300)
                      +|..++-+|.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  .....+.    +.|+.++    ++.+ .+.+. .-.
T Consensus         2 ~~~~~~~~viIiG~-G~~G~~la~~L~~-~g~~v~v-id~~~--~~~~~~~----~~g~~~i~gd~~~~~-~l~~a-~i~   70 (140)
T 3fwz_A            2 NAVDICNHALLVGY-GRVGSLLGEKLLA-SDIPLVV-IETSR--TRVDELR----ERGVRAVLGNAANEE-IMQLA-HLE   70 (140)
T ss_dssp             CCCCCCSCEEEECC-SHHHHHHHHHHHH-TTCCEEE-EESCH--HHHHHHH----HTTCEEEESCTTSHH-HHHHT-TGG
T ss_pred             CcccCCCCEEEECc-CHHHHHHHHHHHH-CCCCEEE-EECCH--HHHHHHH----HcCCCEEECCCCCHH-HHHhc-Ccc
Confidence            56677889999998 9999999998875 5777665 56442  1122211    2344332    2222 22210 013


Q ss_pred             CccEEEEcCCchhH-HHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH
Q 022250          106 ARAVVIDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (300)
Q Consensus       106 ~~DVVIDfT~p~~~-~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~  175 (300)
                      ++|++|-++..+.. ...+..+.+.  ++++|.-  ..+++..+.|.    +.|+-.++.|....+-.++..+
T Consensus        71 ~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar--~~~~~~~~~l~----~~G~d~vi~p~~~~a~~i~~~l  137 (140)
T 3fwz_A           71 CAKWLILTIPNGYEAGEIVASARAKNPDIEIIAR--AHYDDEVAYIT----ERGANQVVMGEREIARTMLELL  137 (140)
T ss_dssp             GCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE--ESSHHHHHHHH----HTTCSEEEEHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEE--ECCHHHHHHHH----HCCCCEEECchHHHHHHHHHHh
Confidence            68999877665443 3334444443  3444432  23444544443    4667788888877776655443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.23  E-value=0.0012  Score=58.94  Aligned_cols=112  Identities=10%  Similarity=0.046  Sum_probs=67.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----c---CHHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----S---DLTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~---dl~~~l~~~~~~~~~D  108 (300)
                      |||.|.|++|.+|+.+++.+.+.++.++++......   ....+.    ..++.+.    +   ++++++      .++|
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~---~~~~~~----~~~v~~~~~D~~d~~~l~~~~------~~~d   67 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVE---KVPDDW----RGKVSVRQLDYFNQESMVEAF------KGMD   67 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGG---GSCGGG----BTTBEEEECCTTCHHHHHHHT------TTCS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHH---HHHHhh----hCCCEEEEcCCCCHHHHHHHH------hCCC
Confidence            579999999999999999987666888887664321   111111    1233221    2   344455      4789


Q ss_pred             EEEEcCCc--------hhHHHHHHHHHHcCCC-EE-EeCCCC------C-HHHHHHHHHHhhhCCCeEE
Q 022250          109 VVIDFTDA--------STVYDNVKQATAFGMR-SV-VYVPHI------Q-LETVSALSAFCDKASMGCL  160 (300)
Q Consensus       109 VVIDfT~p--------~~~~~~~~~al~~G~~-vV-igTTG~------~-~e~~~~L~~~a~~~~i~iv  160 (300)
                      +||.+..+        ..+...+..|.++|+. +| +++.+-      . ......+++..++.++++.
T Consensus        68 ~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~  136 (289)
T 3e48_A           68 TVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYADQHNNPFHMSPYFGYASRLLSTSGIDYT  136 (289)
T ss_dssp             EEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESCCSTTCCSTTHHHHHHHHHHHHHHCCEEE
T ss_pred             EEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccCCCCCCCCccchhHHHHHHHHHHcCCCEE
Confidence            99987643        3445677888888865 44 233221      1 1122345566666666654

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=97.23  E-value=0.00098  Score=65.43  Aligned_cols=76  Identities=8%  Similarity=0.078  Sum_probs=65.0

Q ss_pred             CCcceecCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250           86 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus        86 ~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      .++|+|..+.++.+.   ...+|++|.|.+++.+.+.++.|.++|+++||=|.||..+...+|.++|+++|+. ++.||-
T Consensus        19 ~~~Pv~~~~~~~~~~---p~~~DlavI~vPa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~r-liGPNc   94 (480)
T 3dmy_A           19 QALTQVRRWDSACQK---LPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLL-VMGPDC   94 (480)
T ss_dssp             -CCEEESSHHHHHHH---STTCCEEEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCC-EECSSC
T ss_pred             CCCcccchHHHHHhc---CCCCCEEEEecCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCE-EEecCc
Confidence            368999888887652   2468999999999999999999999999988877799987778999999999986 678997

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.19  E-value=0.001  Score=60.28  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=58.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------------cCcC------CCCcceecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------------DMEQ------PLEIPVMSD   93 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---------------g~~~------~~gv~v~~d   93 (300)
                      +.||+|+|+ |.||+.+++.+.. .+++++. +|++.  ..+....               ++..      ...+...+|
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~-~G~~V~l-~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~   78 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAF-HGFAVTA-YDINT--DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDD   78 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSH--HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EeCCH--HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCC
Confidence            468999998 9999999998875 5888764 67542  1111100               0000      001345688


Q ss_pred             HHHHHhcccccCCccEEEEcCCch--hHHHHHHHH---HHcCCCEEEeCCCCCHHHH
Q 022250           94 LTMVLGSISQSKARAVVIDFTDAS--TVYDNVKQA---TAFGMRSVVYVPHIQLETV  145 (300)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~--~~~~~~~~a---l~~G~~vVigTTG~~~e~~  145 (300)
                      +++++      .++|+||...+++  ...+.....   +..+.-++.-|++++.+++
T Consensus        79 ~~~~~------~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~l  129 (283)
T 4e12_A           79 LAQAV------KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDL  129 (283)
T ss_dssp             HHHHT------TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHh------ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence            88887      4799999887654  333333333   3333333334557776543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.17  E-value=0.005  Score=48.40  Aligned_cols=124  Identities=13%  Similarity=0.278  Sum_probs=70.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e---cCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||+|+|+ |.||+.+++.+.+ .+.+++ ++|++.  .....+.   ...++.+ .   .+.+.+.+.  ...++|+||
T Consensus         5 m~i~IiG~-G~iG~~~a~~L~~-~g~~v~-~~d~~~--~~~~~~~---~~~~~~~~~~d~~~~~~l~~~--~~~~~d~vi   74 (140)
T 1lss_A            5 MYIIIAGI-GRVGYTLAKSLSE-KGHDIV-LIDIDK--DICKKAS---AEIDALVINGDCTKIKTLEDA--GIEDADMYI   74 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH---HHCSSEEEESCTTSHHHHHHT--TTTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHH---HhcCcEEEEcCCCCHHHHHHc--CcccCCEEE
Confidence            68999998 9999999998875 467766 456532  1122121   1123322 1   233332210  014689999


Q ss_pred             EcCCchhHHHHH-HHHHHcCC-CEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH
Q 022250          112 DFTDASTVYDNV-KQATAFGM-RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (300)
Q Consensus       112 DfT~p~~~~~~~-~~al~~G~-~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~  175 (300)
                      .++..+.....+ ..+.+.+. .+|+-+++...+  +.+    ++.|+..+++|....+-.+...+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--~~l----~~~g~~~v~~p~~~~~~~~~~~~  134 (140)
T 1lss_A           75 AVTGKEEVNLMSSLLAKSYGINKTIARISEIEYK--DVF----ERLGVDVVVSPELIAANYIEKLI  134 (140)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHH--HHH----HHTTCSEEECHHHHHHHHHHHHH
T ss_pred             EeeCCchHHHHHHHHHHHcCCCEEEEEecCHhHH--HHH----HHcCCCEEECHHHHHHHHHHHHh
Confidence            887665443333 44444553 566655554332  223    34667788988888876655443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.16  E-value=0.00022  Score=57.81  Aligned_cols=85  Identities=11%  Similarity=0.142  Sum_probs=55.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||+|+|+ |.||+.+++.+.. .+++ +.+++++.  ..+..++   ..+++  ..++++++++.      ++|+||.
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~-~g~~-v~v~~r~~--~~~~~~a---~~~~~~~~~~~~~~~~~~------~~Divi~   86 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSY-PQYK-VTVAGRNI--DHVRAFA---EKYEYEYVLINDIDSLIK------NNDVIIT   86 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCT-TTCE-EEEEESCH--HHHHHHH---HHHTCEEEECSCHHHHHH------TCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCE-EEEEcCCH--HHHHHHH---HHhCCceEeecCHHHHhc------CCCEEEE
Confidence            368999997 9999999998775 6889 77888653  2222222   12233  34678888884      7899998


Q ss_pred             cCCchhHHHHHHHHHHcCCCEE
Q 022250          113 FTDASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV  134 (300)
                      .|+..... ....+++.|..++
T Consensus        87 at~~~~~~-~~~~~l~~g~~vi  107 (144)
T 3oj0_A           87 ATSSKTPI-VEERSLMPGKLFI  107 (144)
T ss_dssp             CSCCSSCS-BCGGGCCTTCEEE
T ss_pred             eCCCCCcE-eeHHHcCCCCEEE
Confidence            88543211 1123445566665

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=97.15  E-value=0.0029  Score=57.80  Aligned_cols=55  Identities=15%  Similarity=0.176  Sum_probs=27.3

Q ss_pred             eccccCcccccccceeeEeecCCCCCcceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEE
Q 022250            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (300)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~v   67 (300)
                      |-|-|||+-+-++..--++.    .+++||.|.|++|.+|+.+++.+.+. .++++++.-
T Consensus         2 ~~~~~~~~~~~~~~~n~~~~----~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~   57 (346)
T 4egb_A            2 HHHHHHSSGVDLGTENLYFQ----SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFD   57 (346)
T ss_dssp             --------------------------CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CcccccccccccCccccccc----cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEe
Confidence            66667776655433222221    22589999999999999999998865 347777654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.13  E-value=0.0036  Score=61.37  Aligned_cols=124  Identities=16%  Similarity=0.104  Sum_probs=68.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCC--Ccchhhhh-cCcC-----------------CCCcceecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV--GEDIGMVC-DMEQ-----------------PLEIPVMSD   93 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~--g~d~~~~~-g~~~-----------------~~gv~v~~d   93 (300)
                      ++||+|+|+ |.||..++..+.+.+++ ++++ +|.+..  ...+..+. |...                 ...+..++|
T Consensus        18 ~mkIaVIGl-G~mG~~lA~~la~~~G~~~V~~-~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd   95 (478)
T 3g79_A           18 IKKIGVLGM-GYVGIPAAVLFADAPCFEKVLG-FQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD   95 (478)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHSTTCCEEEE-ECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCCeEEE-EECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc
Confidence            589999997 99999999998876588 8775 675431  00121211 1000                 112445566


Q ss_pred             HHHHHhcccccCCccEEEEcCCch------------hHH---HHHHHHHHcCCCEEEeCC---CCCHHHHHHHH-HHhhh
Q 022250           94 LTMVLGSISQSKARAVVIDFTDAS------------TVY---DNVKQATAFGMRSVVYVP---HIQLETVSALS-AFCDK  154 (300)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~------------~~~---~~~~~al~~G~~vVigTT---G~~~e~~~~L~-~~a~~  154 (300)
                       .+++      .++|+||.+.+..            .+.   +.+...++.|.-||..+|   |.+++-.+.+. +....
T Consensus        96 -~ea~------~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~  168 (478)
T 3g79_A           96 -FSRI------SELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGL  168 (478)
T ss_dssp             -GGGG------GGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCC
T ss_pred             -HHHH------hcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCC
Confidence             4555      3789998764221            122   233334456765666555   44443333333 22210


Q ss_pred             ---CCCeEEEcCCCcH
Q 022250          155 ---ASMGCLIAPTLSI  167 (300)
Q Consensus       155 ---~~i~iv~a~N~Si  167 (300)
                         ....++.+|.|--
T Consensus       169 ~~~~d~~v~~~Pe~~~  184 (478)
T 3g79_A          169 KAGEDFALAHAPERVM  184 (478)
T ss_dssp             CBTTTBEEEECCCCCC
T ss_pred             CcCCceeEEeCCccCC
Confidence               1258999998743

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.11  E-value=0.006  Score=54.59  Aligned_cols=91  Identities=11%  Similarity=0.026  Sum_probs=54.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-------ecCHHHHHhcccccCC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~  106 (300)
                      ++++|.|.|++|.+|+.+++.+.+..+.+++++..... ......+.    ..++.+       .+++++++      .+
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~-~~~~~~l~----~~~~~~~~~D~~d~~~l~~~~------~~   72 (299)
T 2wm3_A            4 DKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-KKAAKELR----LQGAEVVQGDQDDQVIMELAL------NG   72 (299)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT-SHHHHHHH----HTTCEEEECCTTCHHHHHHHH------TT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC-CHHHHHHH----HCCCEEEEecCCCHHHHHHHH------hc
Confidence            35789999999999999999998764488887553321 11111111    112221       12344555      36


Q ss_pred             ccEEEEcCCch----------hHHHHHHHHHHcCCC-EEE
Q 022250          107 RAVVIDFTDAS----------TVYDNVKQATAFGMR-SVV  135 (300)
Q Consensus       107 ~DVVIDfT~p~----------~~~~~~~~al~~G~~-vVi  135 (300)
                      +|+||.++.+.          .....+..|.+.|+. +|.
T Consensus        73 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~  112 (299)
T 2wm3_A           73 AYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVY  112 (299)
T ss_dssp             CSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEE
Confidence            89999876421          234556677778865 444

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.07  E-value=0.0015  Score=59.05  Aligned_cols=135  Identities=14%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             eEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcc--hhhhhcCcCCCCccee-------cCHH
Q 022250           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED--IGMVCDMEQPLEIPVM-------SDLT   95 (300)
Q Consensus        25 ~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d--~~~~~g~~~~~gv~v~-------~dl~   95 (300)
                      .+|+..  +||.||.|.|++|.+|+.+++.+.+. +.++.++..... ...  ...+.    ..++.+.       +++.
T Consensus         3 ~~m~~~--~m~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~-~~~~~~~~l~----~~~v~~v~~Dl~d~~~l~   74 (318)
T 2r6j_A            3 HGMEEN--GMKSKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPNS-SKTTLLDEFQ----SLGAIIVKGELDEHEKLV   74 (318)
T ss_dssp             --------CCCCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTTC-SCHHHHHHHH----HTTCEEEECCTTCHHHHH
T ss_pred             Cccccc--CCCCeEEEECCCchHHHHHHHHHHHC-CCcEEEEECCCC-chhhHHHHhh----cCCCEEEEecCCCHHHHH
Confidence            345443  34568999999999999999998864 677776543321 110  11111    1223221       2344


Q ss_pred             HHHhcccccCCccEEEEcCCc---hhHHHHHHHHHHcC-CCEEEeCC-CCC--------H-----HHHHHHHHHhhhCCC
Q 022250           96 MVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASM  157 (300)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p---~~~~~~~~~al~~G-~~vVigTT-G~~--------~-----e~~~~L~~~a~~~~i  157 (300)
                      +++      .++|+||.++.+   ......+..|.++| +.-++-+. |.+        +     .....++++.++.++
T Consensus        75 ~a~------~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~  148 (318)
T 2r6j_A           75 ELM------KKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANI  148 (318)
T ss_dssp             HHH------TTCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEECSCCSSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHH------cCCCEEEECCchhhhHHHHHHHHHHHhcCCCCEEEeeccccCcccccCCCCcchhHHHHHHHHHHHHhcCC
Confidence            555      379999988754   34567778888888 66555333 421        1     112346666666666


Q ss_pred             eEE-EcCCCcHHHHHHHH
Q 022250          158 GCL-IAPTLSIGSILLQQ  174 (300)
Q Consensus       158 ~iv-~a~N~SiGv~ll~~  174 (300)
                      ++. +.||+=.+ +++..
T Consensus       149 ~~~~lr~~~~~~-~~~~~  165 (318)
T 2r6j_A          149 PYTYVSANCFAS-YFINY  165 (318)
T ss_dssp             CBEEEECCEEHH-HHHHH
T ss_pred             CeEEEEcceehh-hhhhh
Confidence            643 45665333 44433

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.05  E-value=0.004  Score=59.94  Aligned_cols=69  Identities=20%  Similarity=0.290  Sum_probs=44.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-Cc-----------C---CCC-cceecCHHHHHh
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-ME-----------Q---PLE-IPVMSDLTMVLG   99 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~-----------~---~~g-v~v~~dl~~~l~   99 (300)
                      |||+|+|+ |.||..++..+.+ .++++++ +|.+.  ..+..+.. ..           .   ..+ +..++|++++++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~-~G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~   75 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSA-RGHEVIG-VDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence            58999997 9999999998875 4788654 66532  11111110 00           0   022 556788888774


Q ss_pred             cccccCCccEEEEcCC
Q 022250          100 SISQSKARAVVIDFTD  115 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~  115 (300)
                            ++|+||.+.+
T Consensus        76 ------~aDvviiaVp   85 (436)
T 1mv8_A           76 ------DSDVSFICVG   85 (436)
T ss_dssp             ------TCSEEEECCC
T ss_pred             ------cCCEEEEEcC
Confidence                  7899998764

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.05  E-value=0.0069  Score=58.85  Aligned_cols=70  Identities=13%  Similarity=0.140  Sum_probs=45.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhh---------------hhcCcCCCCcceecCHHHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGM---------------VCDMEQPLEIPVMSDLTMVL   98 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~---------------~~g~~~~~gv~v~~dl~~~l   98 (300)
                      ||||+|+|+ |.||..++..+.+. +++++++ +|++.  ..+..               +.......++..++|+++++
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~~V~~-~d~~~--~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~   80 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEIRVTV-VDVNE--SRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAI   80 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHH
Confidence            579999997 99999999988765 2788664 66531  11111               11000012456678888877


Q ss_pred             hcccccCCccEEEEcC
Q 022250           99 GSISQSKARAVVIDFT  114 (300)
Q Consensus        99 ~~~~~~~~~DVVIDfT  114 (300)
                      +      ++|+||.+.
T Consensus        81 ~------~aDvViiaV   90 (467)
T 2q3e_A           81 K------EADLVFISV   90 (467)
T ss_dssp             H------HCSEEEECC
T ss_pred             h------cCCEEEEEc
Confidence            4      689999775

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.01  E-value=0.0078  Score=54.81  Aligned_cols=89  Identities=13%  Similarity=0.175  Sum_probs=58.3

Q ss_pred             CcceEEEEc-CCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIING-AVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~G-a~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      |+.||+|+| + |.||..++..+.+ .++++. ++|++.   +                .+.++++      .++|+||.
T Consensus        20 ~~~~I~iIGg~-G~mG~~la~~l~~-~G~~V~-~~~~~~---~----------------~~~~~~~------~~aDvVil   71 (298)
T 2pv7_A           20 DIHKIVIVGGY-GKLGGLFARYLRA-SGYPIS-ILDRED---W----------------AVAESIL------ANADVVIV   71 (298)
T ss_dssp             TCCCEEEETTT-SHHHHHHHHHHHT-TTCCEE-EECTTC---G----------------GGHHHHH------TTCSEEEE
T ss_pred             CCCEEEEEcCC-CHHHHHHHHHHHh-CCCeEE-EEECCc---c----------------cCHHHHh------cCCCEEEE
Confidence            457999999 7 9999999998875 466655 355432   0                1345666      47899998


Q ss_pred             cCCchhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHH
Q 022250          113 FTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAF  151 (300)
Q Consensus       113 fT~p~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~  151 (300)
                      +.+|....+.+.....   .+. +|+-.++......+.+.+.
T Consensus        72 avp~~~~~~vl~~l~~~l~~~~-iv~~~~svk~~~~~~~~~~  112 (298)
T 2pv7_A           72 SVPINLTLETIERLKPYLTENM-LLADLTSVKREPLAKMLEV  112 (298)
T ss_dssp             CSCGGGHHHHHHHHGGGCCTTS-EEEECCSCCHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHhhcCCCc-EEEECCCCCcHHHHHHHHh
Confidence            8888887777765543   233 5555555554444444443

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=97.00  E-value=0.0012  Score=61.88  Aligned_cols=131  Identities=23%  Similarity=0.184  Sum_probs=78.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhhh--c--Cc-CCCCcceec--CHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMVC--D--ME-QPLEIPVMS--DLT   95 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-------------~~~g~d~~~~~--g--~~-~~~gv~v~~--dl~   95 (300)
                      +||+|+|+ |++|+.+.+++.++ +++++++-|.             ...|+-.++..  +  +. ....++++.  |++
T Consensus         1 ikVgInG~-G~IGr~vlr~l~~~-~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   78 (331)
T 2g82_O            1 MKVGINGF-GRIGRQVFRILHSR-GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK   78 (331)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChh
Confidence            58999998 99999999998887 9999998763             11221100000  0  00 001244442  444


Q ss_pred             HHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCC-CEEEeCCC----------CCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVPH----------IQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigTTG----------~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      ++--   .+.++|+|+++|......+.+...++.|. .+||..++          .+.++++   .  +.  -.++  +|
T Consensus        79 ~l~w---~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~d~~p~vV~gVN~~~~~---~--~~--~~II--sn  146 (331)
T 2g82_O           79 EIPW---AEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYD---P--SR--HHII--SN  146 (331)
T ss_dssp             GSCT---TTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCC---T--TT--CCEE--EC
T ss_pred             hCcc---cccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCcCCCCEEeeccCHHHhC---c--CC--CCEE--EC
Confidence            3310   01368999999988888999999999996 35555443          2222211   1  11  2344  56


Q ss_pred             CcHHHHHHHHHHHHhc
Q 022250          165 LSIGSILLQQAAISAS  180 (300)
Q Consensus       165 ~SiGv~ll~~~a~~~~  180 (300)
                      =|--.|-|.-+++.+.
T Consensus       147 asCtTn~lap~lk~L~  162 (331)
T 2g82_O          147 ASCTTNSLAPVMKVLE  162 (331)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHH
Confidence            6666676666666654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.99  E-value=0.0013  Score=59.41  Aligned_cols=100  Identities=16%  Similarity=0.212  Sum_probs=55.1

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCcC-------CCCcceecCHHHHHhccccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DMEQ-------PLEIPVMSDLTMVLGSISQS  104 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~~-------~~gv~v~~dl~~~l~~~~~~  104 (300)
                      |||||+|+|+ |.||+.++..+.+ .++++.. +|++.  .....+.  |...       ...+.++ +.+++.+.   -
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~-~g~~V~~-~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~---~   72 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQ-GGNDVTL-IDQWP--AHIEAIRKNGLIADFNGEEVVANLPIF-SPEEIDHQ---N   72 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHHHCEEEEETTEEEEECCCEE-CGGGCCTT---S
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHh-CCCcEEE-EECCH--HHHHHHHhCCEEEEeCCCeeEecceee-cchhhccc---C
Confidence            4689999998 9999999998875 4677664 56432  1111111  1000       0011111 22232210   0


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCH
Q 022250          105 KARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~  142 (300)
                      .++|+||-++.+....+.+.....   .+..+|.-++|+..
T Consensus        73 ~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~  113 (316)
T 2ew2_A           73 EQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGH  113 (316)
T ss_dssp             CCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred             CCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence            278999988887776666655433   34556655668763

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=96.98  E-value=0.004  Score=58.31  Aligned_cols=152  Identities=16%  Similarity=0.146  Sum_probs=86.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-C-------------CCcchh-hhh---c--Cc-CCCCccee--
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-------------VGEDIG-MVC---D--ME-QPLEIPVM--   91 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-------------~g~d~~-~~~---g--~~-~~~gv~v~--   91 (300)
                      |+||+|+|. ||+||.+.+++.+.+++|+|++-|+. .             .|+=-+ ++.   +  +. ....++++  
T Consensus         3 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e   81 (337)
T 3v1y_O            3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI   81 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEECC
T ss_pred             ceEEEEECC-ChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEEe
Confidence            589999998 99999999999888899999987751 0             011000 000   0  00 00013333  


Q ss_pred             cCHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCC---------CCCHHHHHHHHHHhhhCCCeEEE
Q 022250           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP---------HIQLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTT---------G~~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      .|++++-=   .+..+|+|++.|-.....+.+...++.|.. |||..|         |.+.+.++.      +  -.++ 
T Consensus        82 ~dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~------~--~~II-  149 (337)
T 3v1y_O           82 RNPDEIPW---AEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTS------D--IDIV-  149 (337)
T ss_dssp             SSGGGCCH---HHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCSSSCBCCTTTTGGGCCT------T--CCEE-
T ss_pred             cCcccCCc---cccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeECCCCCHHHcCC------C--CcEE-
Confidence            23333200   013689999888777778888888888864 555433         334433211      1  2344 


Q ss_pred             cCCCcHHHHHHHHHHHHhccCCCCeE---EEEccC----C-CCCCCch
Q 022250          162 APTLSIGSILLQQAAISASFHYKNVE---IVESRP----N-ARDFPSP  201 (300)
Q Consensus       162 a~N~SiGv~ll~~~a~~~~~~~~die---IiE~Hh----~-K~DaPSG  201 (300)
                       +|=|--.|-|.-+++.+-.. |.|+   +.-.|.    + ..|.|++
T Consensus       150 -SnasCTTn~Lap~lkvL~d~-fGI~~g~mTTvha~T~~q~~~Dg~~~  195 (337)
T 3v1y_O          150 -SNASCTTNCLAPLAKVIHDN-FGIIEGLMTTVHAITATQKTVDGPSS  195 (337)
T ss_dssp             -ECCCHHHHHHHHHHHHHHHH-HCEEEEEEEEEECCCTTSBSSSCCCT
T ss_pred             -ecCchhhhhHHHHHHHHHHh-cCeEEEEEeeeeeccchhhhccCCcc
Confidence             66666667666666665432 2333   233363    2 3688874

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.96  E-value=0.0015  Score=59.82  Aligned_cols=120  Identities=16%  Similarity=0.169  Sum_probs=67.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhh--cCcCCCC-----cceec--CHHHHHhccccc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVC--DMEQPLE-----IPVMS--DLTMVLGSISQS  104 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~~~~~--g~~~~~g-----v~v~~--dl~~~l~~~~~~  104 (300)
                      |||+|+|+ |.||+.++..+.+ .+.++. ++|+  +.  .....+.  |.....+     +.+++  ++++++      
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~-~g~~V~-~~~r~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------   69 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVD-NGNEVR-IWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL------   69 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHH-HCCEEE-EECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH------
T ss_pred             CEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEEccCCH--HHHHHHHHhCcCcccCccccceEEecHHhHHHHH------
Confidence            58999998 9999999998875 356765 4555  31  1112121  1000001     24455  777776      


Q ss_pred             CCccEEEEcCCchhHHHHHHHHH--HcCCCEEEeCCCC---CHHHHHHHHHHhhhC-----CCeEEEcCCCc
Q 022250          105 KARAVVIDFTDASTVYDNVKQAT--AFGMRSVVYVPHI---QLETVSALSAFCDKA-----SMGCLIAPTLS  166 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al--~~G~~vVigTTG~---~~e~~~~L~~~a~~~-----~i~iv~a~N~S  166 (300)
                      .++|+||-++.+..+.+.+....  ..+..+|.-+.|+   .+...+.+.+...+.     ..++...||+.
T Consensus        70 ~~~D~vi~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~  141 (335)
T 1txg_A           70 ENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIA  141 (335)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCH
T ss_pred             hcCCEEEEcCChHHHHHHHHHHhcCCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcH
Confidence            47899998888877766665443  2344444434476   322222333333221     14567778874

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.95  E-value=0.0015  Score=59.27  Aligned_cols=97  Identities=11%  Similarity=0.110  Sum_probs=58.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC----C-cEEEEEEecCCCCcchhhhh---cCc--C------CCCcceecCHHHH
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR----G-MEVAGAIDSHSVGEDIGMVC---DME--Q------PLEIPVMSDLTMV   97 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~----~-~eLvg~vd~~~~g~d~~~~~---g~~--~------~~gv~v~~dl~~~   97 (300)
                      +||||+|+|+ |.||..++..+.+.+    + .++. ++++.   .....+.   |..  .      ...+.++++.+. 
T Consensus         7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r~---~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-   80 (317)
T 2qyt_A            7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGLLEVS-WIARG---AHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAE-   80 (317)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSEEEE-EECCH---HHHHHHHHHTSEEEECSSCEEEECCSEEESCHHH-
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCccccCCCCCEE-EEEcH---HHHHHHHhcCCeEEEeCCCCeEEecceEecCccc-
Confidence            4589999998 999999999887651    5 6766 45542   1111111   110  0      011122345543 


Q ss_pred             HhcccccCCccEEEEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCH
Q 022250           98 LGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (300)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~  142 (300)
                      +      .++|+||-++.+..+.+.+.....   .+..+|.-++|+..
T Consensus        81 ~------~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           81 V------GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             H------CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             c------CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            3      478999988887777666654433   24556666778865

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.95  E-value=0.0012  Score=64.82  Aligned_cols=155  Identities=11%  Similarity=0.079  Sum_probs=87.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhhcCcCCCCcce----ecCHHHHHhcccccCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKA  106 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-----~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~  106 (300)
                      .||+|+|+ |.||..+++.+.+.     .+++++...+...  +.. +.+   ...|+..    ..+++++++      .
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~s--ks~-e~A---~e~G~~v~d~ta~s~aEAa~------~  121 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGS--KSF-DEA---RAAGFTEESGTLGDIWETVS------G  121 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTC--SCH-HHH---HHTTCCTTTTCEEEHHHHHH------H
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCCEEEEEeCCch--hhH-HHH---HHCCCEEecCCCCCHHHHHh------c
Confidence            68999998 99999999998865     2777765555432  111 111   1234443    257888884      7


Q ss_pred             ccEEEEcCCchhHHHHHHHHH---HcCCCEEEeCCCCCHHHHHH-HHHHhhhCCCeEE-EcCCCcHHHHHHHHHHHHh-c
Q 022250          107 RAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSA-LSAFCDKASMGCL-IAPTLSIGSILLQQAAISA-S  180 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTTG~~~e~~~~-L~~~a~~~~i~iv-~a~N~SiGv~ll~~~a~~~-~  180 (300)
                      +|+||-..+|....+.+...+   +.|. +|+=..|++-..+++ ....-+  +++++ +.||..--  ++.+..... .
T Consensus       122 ADVVILaVP~~~~~eVl~eI~p~LK~Ga-ILs~AaGf~I~~le~~~i~~p~--dv~VVrVmPNtPg~--~VR~~y~~G~~  196 (525)
T 3fr7_A          122 SDLVLLLISDAAQADNYEKIFSHMKPNS-ILGLSHGFLLGHLQSAGLDFPK--NISVIAVCPKGMGP--SVRRLYVQGKE  196 (525)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTC-EEEESSSHHHHHHHHTTCCCCT--TSEEEEEEESSCHH--HHHHHHHHHTT
T ss_pred             CCEEEECCChHHHHHHHHHHHHhcCCCC-eEEEeCCCCHHHHhhhcccCCC--CCcEEEEecCCCch--hHHHHHhcccc
Confidence            899998888876655554333   3343 455567887544332 112222  35555 78888754  233332221 0


Q ss_pred             cCCCCeE-EEEccCCCCCCCchHHHHHHHHHHh
Q 022250          181 FHYKNVE-IVESRPNARDFPSPDATQIANNLSN  212 (300)
Q Consensus       181 ~~~~die-IiE~Hh~K~DaPSGTA~~l~~~i~~  212 (300)
                      -.+..+- .+-.|.   | +||.|+.++..+.+
T Consensus       197 ~~g~Gv~~liAv~q---d-~tgea~e~alala~  225 (525)
T 3fr7_A          197 INGAGINSSFAVHQ---D-VDGRATDVALGWSV  225 (525)
T ss_dssp             STTCSCCEEEEEEE---C-SSSCHHHHHHHHHH
T ss_pred             cccCCccEEEEcCC---C-CCHHHHHHHHHHHH
Confidence            0111111 222222   2 66777777777655

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=96.95  E-value=0.0018  Score=61.19  Aligned_cols=154  Identities=18%  Similarity=0.074  Sum_probs=87.2

Q ss_pred             CcceEEEEcCCchHHHHHHHH----HHhcCCcEEEEEEecCC--------------CCcchhhhhc--------CcC---
Q 022250           34 SNIKVIINGAVKEIGRAAVIA----VTKARGMEVAGAIDSHS--------------VGEDIGMVCD--------MEQ---   84 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~----i~~~~~~eLvg~vd~~~--------------~g~d~~~~~g--------~~~---   84 (300)
                      |++||+|+|. ||+||.+.++    +.+.+++|+|++-|+..              .|+=-+++.-        -+.   
T Consensus         1 m~~kv~INGF-GrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l~   79 (359)
T 3ids_C            1 MPIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLV   79 (359)
T ss_dssp             CCEEEEEECT-THHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCCEEE
T ss_pred             CceEEEEECC-ChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEEecccccccCCCCEEE
Confidence            6799999998 9999999998    66677899999987310              0100000000        000   


Q ss_pred             --CCCcceec---CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCC----------CCCHHHHHHH
Q 022250           85 --PLEIPVMS---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP----------HIQLETVSAL  148 (300)
Q Consensus        85 --~~gv~v~~---dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTT----------G~~~e~~~~L  148 (300)
                        ...++++.   |++++-=   .+..+|+|++.|-.....+.+...++.|.. |||..|          |.+.+.++  
T Consensus        80 inGk~I~v~~~e~dp~~i~w---~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~--  154 (359)
T 3ids_C           80 VNGHRILCVKAQRNPADLPW---GKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYN--  154 (359)
T ss_dssp             ETTEEEEECCCCSSTTTSCH---HHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCBSSCEECCTTTTGGGCC--
T ss_pred             ECCEEEEEEEccCCcccCCc---cccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCCeEEeccCHHHcC--
Confidence              00133332   3332100   012689999888777778888888898865 555433          23333211  


Q ss_pred             HHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh-ccCCCCe---EEEEccC----C-CCCCCch
Q 022250          149 SAFCDKASMGCLIAPTLSIGSILLQQAAISA-SFHYKNV---EIVESRP----N-ARDFPSP  201 (300)
Q Consensus       149 ~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~-~~~~~di---eIiE~Hh----~-K~DaPSG  201 (300)
                       ..  +  -.++  +|=|--.|-|.-+++.+ -.. |.|   -+.-.|-    + -.|.|++
T Consensus       155 -~~--~--~~II--SNaSCTTn~Lap~lkvL~~d~-fGI~~g~mTTvha~T~tQ~~vD~~~~  208 (359)
T 3ids_C          155 -PS--E--HHVV--SNASCTTNCLAPIVHVLVKEG-FGVQTGLMTTIHSYTATQKTVDGVSV  208 (359)
T ss_dssp             -TT--T--CSEE--ECCCHHHHHHHHHHHHHHHTT-CCCSEEEEEEEEECCTTSBSSSCCCT
T ss_pred             -CC--C--CCEE--ECCchHhhhHHHhhhhhhhcc-CCeEEEEEeeeeeccchhhhhcCCcc
Confidence             00  1  2444  56666667777777777 533 333   2333463    2 3688876

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.93  E-value=0.0014  Score=61.09  Aligned_cols=75  Identities=20%  Similarity=0.143  Sum_probs=52.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|+ |.||+.++..+.. .+++++ +++++.  ....+.+   ...|+.++ ++++++.      ++|+||.++
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~-~G~~V~-~~~~~~--~~~~~~a---~~~G~~~~-~~~e~~~------~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKD-SGVDVT-VGLRSG--SATVAKA---EAHGLKVA-DVKTAVA------AADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHH-TTCCEE-EECCTT--CHHHHHH---HHTTCEEE-CHHHHHH------TCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHH-CcCEEE-EEECCh--HHHHHHH---HHCCCEEc-cHHHHHh------cCCEEEEeC
Confidence            468999998 9999999998875 467765 455432  1111122   23455555 8888874      789999888


Q ss_pred             CchhHHHHHH
Q 022250          115 DASTVYDNVK  124 (300)
Q Consensus       115 ~p~~~~~~~~  124 (300)
                      ++....+.+.
T Consensus        81 p~~~~~~v~~   90 (338)
T 1np3_A           81 PDEFQGRLYK   90 (338)
T ss_dssp             CHHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            8887766665

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.91  E-value=0.0054  Score=56.24  Aligned_cols=33  Identities=24%  Similarity=0.130  Sum_probs=27.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ++||.|.|+||.+|+.+++.+.+. +.++.+...
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R   42 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDA-HRPTYILAR   42 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEEC
Confidence            479999999999999999999865 578776554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.86  E-value=0.0026  Score=54.41  Aligned_cols=32  Identities=13%  Similarity=0.390  Sum_probs=27.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~-~g~~V~~~~R   32 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLST-TDYQIYAGAR   32 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-SSCEEEEEES
T ss_pred             CeEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            4899999999999999999885 5788887654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.84  E-value=0.0022  Score=58.54  Aligned_cols=116  Identities=13%  Similarity=0.123  Sum_probs=69.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..+|+|+|+ |+||+.+++.+.. -++++. ++|+..  .....+.    +.|+..  +.++++++      ..+|+||.
T Consensus       157 g~~v~IiG~-G~iG~~~a~~l~~-~G~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~l~~~l------~~aDvVi~  221 (300)
T 2rir_A          157 GSQVAVLGL-GRTGMTIARTFAA-LGANVK-VGARSS--AHLARIT----EMGLVPFHTDELKEHV------KDIDICIN  221 (300)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESSH--HHHHHHH----HTTCEEEEGGGHHHHS------TTCSEEEE
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HCCCeEEchhhHHHHh------hCCCEEEE
Confidence            478999998 9999999998875 467765 467542  1111111    123332  35788887      47999998


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      .+++....+.....++.|.-+|--..|-..-+   + +.+++.++.++..||++-++
T Consensus       222 ~~p~~~i~~~~~~~mk~g~~lin~a~g~~~~~---~-~~a~~~G~~~i~~pg~~g~v  274 (300)
T 2rir_A          222 TIPSMILNQTVLSSMTPKTLILDLASRPGGTD---F-KYAEKQGIKALLAPGLPGIV  274 (300)
T ss_dssp             CCSSCCBCHHHHTTSCTTCEEEECSSTTCSBC---H-HHHHHHTCEEEECCCHHHHH
T ss_pred             CCChhhhCHHHHHhCCCCCEEEEEeCCCCCcC---H-HHHHHCCCEEEECCCCCCcH
Confidence            88764432222223344433332222211111   2 45566788888899988876

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.84  E-value=0.0036  Score=56.40  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=55.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc-CCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ||+||.|.|++|.+|+.+++.+.+ .+.+++++...+.  .. . +.+.. -..++. .+++++++      .++|+||.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~--~~-~-~~~~~~~~~Dl~-~~~~~~~~------~~~d~Vih   68 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRSIG--NK-A-INDYEYRVSDYT-LEDLINQL------NDVDAVVH   68 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCC---------CCEEEECCCC-HHHHHHHT------TTCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEeCCCC--cc-c-CCceEEEEcccc-HHHHHHhh------cCCCEEEE
Confidence            578999999999999999999886 4788887554311  11 1 10100 011222 33455555      37999998


Q ss_pred             cCCc--------------hhHHHHHHHHHHcCCC-EE
Q 022250          113 FTDA--------------STVYDNVKQATAFGMR-SV  134 (300)
Q Consensus       113 fT~p--------------~~~~~~~~~al~~G~~-vV  134 (300)
                      +..+              ..+...++.|.+.|+. +|
T Consensus        69 ~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v  105 (311)
T 3m2p_A           69 LAATRGSQGKISEFHDNEILTQNLYDACYENNISNIV  105 (311)
T ss_dssp             CCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            7632              1235667788888877 54

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.83  E-value=0.0028  Score=54.86  Aligned_cols=73  Identities=19%  Similarity=0.157  Sum_probs=49.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||+|+|+ |.||+.+++.+.+ .+.++. ++|++.             +           .+      .++|+||.+.
T Consensus        19 ~~~I~iiG~-G~mG~~la~~l~~-~g~~V~-~~~~~~-------------~-----------~~------~~aD~vi~av   65 (209)
T 2raf_A           19 GMEITIFGK-GNMGQAIGHNFEI-AGHEVT-YYGSKD-------------Q-----------AT------TLGEIVIMAV   65 (209)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECTTC-------------C-----------CS------SCCSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEcCCH-------------H-----------Hh------ccCCEEEEcC
Confidence            579999997 9999999998875 467765 355432             0           11      4689999888


Q ss_pred             CchhHHHHHHH---HHHcCCCEEEeCCCCC
Q 022250          115 DASTVYDNVKQ---ATAFGMRSVVYVPHIQ  141 (300)
Q Consensus       115 ~p~~~~~~~~~---al~~G~~vVigTTG~~  141 (300)
                      ++....+.+..   .++ +..+|.-++|++
T Consensus        66 ~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           66 PYPALAALAKQYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             CHHHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred             CcHHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence            77666655543   344 665665566765

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.82  E-value=0.0038  Score=54.24  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=27.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      ||++|.|.|++|.+|+.+++.+.+....++++..
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~   55 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFA   55 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEE
Confidence            3678999999999999999998865337777654

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.80  E-value=0.0016  Score=57.94  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=51.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+|||.|.|++|.+|+.+++.+.+ .+.++++.. +..  -|.            .-.++++++++.    .++|+||.+
T Consensus         4 M~m~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~-r~~--~D~------------~d~~~~~~~~~~----~~~d~vi~~   63 (287)
T 3sc6_A            4 MKERVIITGANGQLGKQLQEELNP-EEYDIYPFD-KKL--LDI------------TNISQVQQVVQE----IRPHIIIHC   63 (287)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHSCT-TTEEEEEEC-TTT--SCT------------TCHHHHHHHHHH----HCCSEEEEC
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHh-CCCEEEEec-ccc--cCC------------CCHHHHHHHHHh----cCCCEEEEC
Confidence            557999999999999999998875 478877643 321  111            112345566641    268999987


Q ss_pred             CCchh------------------HHHHHHHHHHcCCCEE
Q 022250          114 TDAST------------------VYDNVKQATAFGMRSV  134 (300)
Q Consensus       114 T~p~~------------------~~~~~~~al~~G~~vV  134 (300)
                      .....                  ....++.|.++|+.+|
T Consensus        64 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v  102 (287)
T 3sc6_A           64 AAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLV  102 (287)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEE
T ss_pred             CcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            53211                  2345666777776665

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.78  E-value=0.0015  Score=60.25  Aligned_cols=88  Identities=14%  Similarity=0.056  Sum_probs=59.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC--cceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .++|+|+|+ |.||+.+++.+.+..+++-+.++|++.  ..+..+.   ..++  +..+++++++++      ++|+||-
T Consensus       135 ~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~--~~~~~l~---~~~~~~~~~~~~~~e~v~------~aDiVi~  202 (312)
T 2i99_A          135 SEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTK--ENAEKFA---DTVQGEVRVCSSVQEAVA------GADVIIT  202 (312)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSH--HHHHHHH---HHSSSCCEECSSHHHHHT------TCSEEEE
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHH---HHhhCCeEEeCCHHHHHh------cCCEEEE
Confidence            468999998 999999999988765675567788653  2223333   1223  566789999884      6899997


Q ss_pred             cCCchhHHHHHH-HHHHcCCCEEEe
Q 022250          113 FTDASTVYDNVK-QATAFGMRSVVY  136 (300)
Q Consensus       113 fT~p~~~~~~~~-~al~~G~~vVig  136 (300)
                      +|+ .. .+.+. ..++.|.+++..
T Consensus       203 atp-~~-~~v~~~~~l~~g~~vi~~  225 (312)
T 2i99_A          203 VTL-AT-EPILFGEWVKPGAHINAV  225 (312)
T ss_dssp             CCC-CS-SCCBCGGGSCTTCEEEEC
T ss_pred             EeC-CC-CcccCHHHcCCCcEEEeC
Confidence            764 21 22221 356678777753

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.77  E-value=0.015  Score=56.86  Aligned_cols=121  Identities=12%  Similarity=0.124  Sum_probs=67.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------cCc---C----CCCcceecCHHHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------DME---Q----PLEIPVMSDLTMVL   98 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---------g~~---~----~~gv~v~~dl~~~l   98 (300)
                      .|||+|+|+ |.||..++..+.+ .++++++ +|.+.  ..+..+.         |+.   .    ...+..++|+++++
T Consensus         8 ~~~I~VIG~-G~vG~~lA~~la~-~G~~V~~-~d~~~--~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~   82 (478)
T 2y0c_A            8 SMNLTIIGS-GSVGLVTGACLAD-IGHDVFC-LDVDQ--AKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAV   82 (478)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred             CceEEEECc-CHHHHHHHHHHHh-CCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHh
Confidence            489999997 9999999998874 5788665 56431  1111111         000   0    11245677888777


Q ss_pred             hcccccCCccEEEEcCCc----------hhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhh--------CCC
Q 022250           99 GSISQSKARAVVIDFTDA----------STVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDK--------ASM  157 (300)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p----------~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~--------~~i  157 (300)
                      .      ++|+||.+.+.          ..+.+.+....+   .+.-||..+ +..+...+++.+..++        ...
T Consensus        83 ~------~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S-Tv~~gt~~~l~~~l~~~~~~g~~~~~~  155 (478)
T 2y0c_A           83 A------HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS-TVPVGTAERVRAAVAEELAKRGGDQMF  155 (478)
T ss_dssp             H------HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCE
T ss_pred             h------cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CcCCCchHHHHHHHHHHhcCCCCCccE
Confidence            4      68999977543          455555544333   344454443 4322222222222211        235


Q ss_pred             eEEEcCCCcH
Q 022250          158 GCLIAPTLSI  167 (300)
Q Consensus       158 ~iv~a~N~Si  167 (300)
                      +++++|.|--
T Consensus       156 ~v~~~Pe~~~  165 (478)
T 2y0c_A          156 SVVSNPEFLK  165 (478)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEEChhhhc
Confidence            7888888753

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=96.76  E-value=0.0029  Score=59.44  Aligned_cols=132  Identities=20%  Similarity=0.199  Sum_probs=78.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhh--hcCc---CCCCccee--c
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMV--CDME---QPLEIPVM--S   92 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~~~~--~g~~---~~~gv~v~--~   92 (300)
                      .|+||+|+|. ||+||.+.+.+.+.+ ++++++-|+..              .|+=-+++  .|-.   ....+.++  .
T Consensus         6 ~~~kvgInGF-GRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~   83 (346)
T 3h9e_O            6 RELTVGINGF-GRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCK   83 (346)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CeeEEEEECC-ChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEecC
Confidence            4799999998 999999999888765 99999887421              01100000  0000   00123333  2


Q ss_pred             CHHHHHhcccc-cCCccEEEEcCCchhHHHHHHHHHHcCC-CEEEeCC---------CCCHHHHHHHHHHhhhCCCeEEE
Q 022250           93 DLTMVLGSISQ-SKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP---------HIQLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus        93 dl~~~l~~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigTT---------G~~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      |++++-    | +.++|+|++.|-.....+.+...++.|. .|||-.|         |.+.+.++.     .+  -.++ 
T Consensus        84 dp~~i~----W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~d~plvV~gVN~~~~~~-----~~--~~II-  151 (346)
T 3h9e_O           84 EPKQIP----WRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNP-----GS--MNIV-  151 (346)
T ss_dssp             SGGGCC----GGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCT-----TT--CSEE-
T ss_pred             ChhhCC----cccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeeCcccCHHHcCc-----cc--CCEE-
Confidence            333321    1 1278999998888888899999999995 4666544         344433211     01  2444 


Q ss_pred             cCCCcHHHHHHHHHHHHhc
Q 022250          162 APTLSIGSILLQQAAISAS  180 (300)
Q Consensus       162 a~N~SiGv~ll~~~a~~~~  180 (300)
                       +|=|--.|-|.-+++.+-
T Consensus       152 -SNasCTTn~Lap~lkvL~  169 (346)
T 3h9e_O          152 -SNASCTTNCLAPLAKVIH  169 (346)
T ss_dssp             -ECCCHHHHHHHHHHHHHH
T ss_pred             -ECCcchhhhHHHHHHHHH
Confidence             666667776666666654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.71  E-value=0.0052  Score=52.31  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=27.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |||.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~-g~~V~~~~R   32 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRR-GHEVLAVVR   32 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHC-CCEEEEEEe
Confidence            58999999999999999998864 788887653

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.68  E-value=0.0061  Score=50.90  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=27.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      +||.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r   35 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVR   35 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEe
Confidence            68999999999999999998864 788887543

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.68  E-value=0.0031  Score=58.67  Aligned_cols=58  Identities=16%  Similarity=0.149  Sum_probs=29.0

Q ss_pred             eccccCcccccccceeeEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEE
Q 022250            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAI   67 (300)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~v   67 (300)
                      |.--|..||-++..+.-.|.......+++|.|.|++|.+|+.+++.+.+. + .+++++.
T Consensus         6 ~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~   64 (377)
T 2q1s_A            6 HHHHHSSGLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLEL-GVNQVHVVD   64 (377)
T ss_dssp             --------------------CCGGGTTCEEEEETTTSHHHHHHHHHHHHT-TCSEEEEEC
T ss_pred             ccccccCCcccccccCCCCCChHHhCCCEEEEECCccHHHHHHHHHHHHc-CCceEEEEE
Confidence            43344456666665654443222223579999999999999999998864 6 8888753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.66  E-value=0.0099  Score=47.37  Aligned_cols=125  Identities=11%  Similarity=0.148  Sum_probs=69.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e---cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (300)
                      |.+|.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  .....+.    +.++.+ +   .+.+.+.+ . ...++|+|
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~-~g~~V~~-id~~~--~~~~~~~----~~~~~~~~gd~~~~~~l~~-~-~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTA-AGKKVLA-VDKSK--EKIELLE----DEGFDAVIADPTDESFYRS-L-DLEGVSAV   74 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCEEE-EESCH--HHHHHHH----HTTCEEEECCTTCHHHHHH-S-CCTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCeEEE-EECCH--HHHHHHH----HCCCcEEECCCCCHHHHHh-C-CcccCCEE
Confidence            568999998 9999999999875 4777764 56532  1112221    123322 1   23322221 0 01468999


Q ss_pred             EEcCCchhH-HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH
Q 022250          111 IDFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (300)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~  175 (300)
                      |..+..+.. ...+..+.+.+...|+... -+++..+.|    ++.|+-.++.|....|-.+...+
T Consensus        75 i~~~~~~~~n~~~~~~a~~~~~~~iia~~-~~~~~~~~l----~~~G~~~vi~p~~~~~~~l~~~i  135 (141)
T 3llv_A           75 LITGSDDEFNLKILKALRSVSDVYAIVRV-SSPKKKEEF----EEAGANLVVLVADAVKQAFMDKI  135 (141)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCCCCEEEEE-SCGGGHHHH----HHTTCSEEEEHHHHHHHHHHHHH
T ss_pred             EEecCCHHHHHHHHHHHHHhCCceEEEEE-cChhHHHHH----HHcCCCEEECHHHHHHHHHHHHH
Confidence            876653333 4444555565644444332 222333344    34567778888877776555443

>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*

Probab=96.64  E-value=0.021  Score=54.14  Aligned_cols=143  Identities=13%  Similarity=0.151  Sum_probs=92.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh---c-----------------CCcEEEEEEec--CCCCcchhhhh----cCcCC--C
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK---A-----------------RGMEVAGAIDS--HSVGEDIGMVC----DMEQP--L   86 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~---~-----------------~~~eLvg~vd~--~~~g~d~~~~~----g~~~~--~   86 (300)
                      |+||.|+|. |...+.+++-+..   .                 .|.|+|+++|-  .+.|+|+.+.+    +.-.+  .
T Consensus        13 ~~~~~~~Gv-Gn~ASslvqGie~yk~~~~~~~Gl~~~~~~~y~~~DievvaafDVd~~KVGkdl~eai~~~pn~Vp~~l~   91 (394)
T 1vjp_A           13 MVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTS   91 (394)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCSS
T ss_pred             eeeeEEEEe-hHHHHHHHHHHHHHHcCCCCCccccchhccCCCcCceEEEEEEeccccccCCcHHHHHhhCcCCCCcccC
Confidence            799999998 9999999886632   1                 12699999984  45777775432    00011  1


Q ss_pred             Cccee-----c----------------CHHHHHh---cccccCCccEEEEcC------Cch------------------h
Q 022250           87 EIPVM-----S----------------DLTMVLG---SISQSKARAVVIDFT------DAS------------------T  118 (300)
Q Consensus        87 gv~v~-----~----------------dl~~~l~---~~~~~~~~DVVIDfT------~p~------------------~  118 (300)
                      ++.+.     +                +.++..+   +.+++.++||||.+.      +..                  +
T Consensus        92 ~V~V~~G~~ldg~~~~~~~~~~~~e~~s~~e~v~~vv~~lk~~~~DVvIn~~STE~~~p~gs~~~l~~ai~~~~~~~i~a  171 (394)
T 1vjp_A           92 DPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLTA  171 (394)
T ss_dssp             CCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCCH
T ss_pred             CCEEEeccccCcccccchhhhccccccchhhHHHHHHHHHHHcCCCEEEEecCccCCCCCCCHHHHHHHHhcCCCCccCh
Confidence            22211     0                1122111   112346799999986      222                  3


Q ss_pred             HHHHHHHHHH-----cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH-HHHhc
Q 022250          119 VYDNVKQATA-----FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-AISAS  180 (300)
Q Consensus       119 ~~~~~~~al~-----~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~-a~~~~  180 (300)
                      ..-++..|++     .|++.|-++|.+.. ....+.++++++|+| +..-.|..|..++... +..+.
T Consensus       172 S~~YA~AAl~~~~~~aG~~fVN~~P~~ia-~~P~~~ela~~~gvp-i~GDD~ktGqT~lks~La~~l~  237 (394)
T 1vjp_A          172 TQVYAYAAALYANKRGGAAFVNVIPTFIA-NDPAFVELAKENNLV-VFGDDGATGATPFTADVLSHLA  237 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECSSSCST-TCHHHHHHHHHTTEE-EECSSBSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccCCcceEecCCcccc-CCHHHHHHHHHcCCC-EEccccCCCCCchHHHHHHHHH
Confidence            4456788999     99999999996542 123578888999988 6677799999988764 44444

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=96.62  E-value=0.017  Score=55.07  Aligned_cols=115  Identities=14%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcC--------------CCCcceecCHHHHHhcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--------------PLEIPVMSDLTMVLGSI  101 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~--------------~~gv~v~~dl~~~l~~~  101 (300)
                      |||+|+|+ |.||..++..+.+  ++++++ +|++.  ..+..+.....              ...+..++|+++++.  
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~--G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~--   72 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL--QNEVTI-VDILP--SKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--   72 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT--TSEEEE-ECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--
T ss_pred             CEEEEECC-CHHHHHHHHHHhC--CCEEEE-EECCH--HHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc--
Confidence            58999998 9999999998875  788765 56432  11111110000              112345677777764  


Q ss_pred             cccCCccEEEEcCCch-----------hHHHHHHHH--HHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          102 SQSKARAVVIDFTDAS-----------TVYDNVKQA--TAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       102 ~~~~~~DVVIDfT~p~-----------~~~~~~~~a--l~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                          ++|+||.+.++.           .+.+.+...  +..|.-+|..+| +...  .+++.+...+.  +++++|.|.
T Consensus        73 ----~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~--~~~l~~~~~~~--~v~~~Pe~~  143 (402)
T 1dlj_A           73 ----EAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGF--ITEMRQKFQTD--RIIFSPEFL  143 (402)
T ss_dssp             ----HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTH--HHHHHHHTTCS--CEEECCCCC
T ss_pred             ----CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccH--HHHHHHHhCCC--eEEECCccc
Confidence                689999777544           244444333  344554554344 4432  23444444432  677777653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.61  E-value=0.0046  Score=55.89  Aligned_cols=128  Identities=14%  Similarity=0.129  Sum_probs=71.6

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCc---chhhhhcCcCCCCccee-------cCHHHHHhccc
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE---DIGMVCDMEQPLEIPVM-------SDLTMVLGSIS  102 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~---d~~~~~g~~~~~gv~v~-------~dl~~~l~~~~  102 (300)
                      ++|++|.|.|++|.+|+.+++.+.+. +.++.++......+.   ....+..+ ...++.+.       +++.+++    
T Consensus         2 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~l~~~-~~~~v~~v~~D~~d~~~l~~a~----   75 (321)
T 3c1o_A            2 SHMEKIIIYGGTGYIGKFMVRASLSF-SHPTFIYARPLTPDSTPSSVQLREEF-RSMGVTIIEGEMEEHEKMVSVL----   75 (321)
T ss_dssp             --CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECCCCTTCCHHHHHHHHHH-HHTTCEEEECCTTCHHHHHHHH----
T ss_pred             CcccEEEEEcCCchhHHHHHHHHHhC-CCcEEEEECCcccccChHHHHHHHHh-hcCCcEEEEecCCCHHHHHHHH----
Confidence            35688999999999999999998864 678776543220110   01000000 01122221       2345555    


Q ss_pred             ccCCccEEEEcCCc---hhHHHHHHHHHHcC-CCEEEeCC-CCC--------H-----HHHHHHHHHhhhCCCeEE-EcC
Q 022250          103 QSKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASMGCL-IAP  163 (300)
Q Consensus       103 ~~~~~DVVIDfT~p---~~~~~~~~~al~~G-~~vVigTT-G~~--------~-----e~~~~L~~~a~~~~i~iv-~a~  163 (300)
                        ..+|+||.+..+   ......+..|.++| +.-++-+. |.+        +     .....++++.++.++++. +.|
T Consensus        76 --~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~lrp  153 (321)
T 3c1o_A           76 --KQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSA  153 (321)
T ss_dssp             --TTCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECSCCSSCGGGCCCCHHHHHHHHHHHHHHHHHHHHTCCBEEEEC
T ss_pred             --cCCCEEEECCCccchhhHHHHHHHHHHhCCccEEeccccccCccccccCCCcchHHHHHHHHHHHHHHcCCCeEEEEe
Confidence              369999988753   45577788888888 65554333 421        1     012345566665555433 456


Q ss_pred             CCcHH
Q 022250          164 TLSIG  168 (300)
Q Consensus       164 N~SiG  168 (300)
                      |+=.|
T Consensus       154 ~~~~~  158 (321)
T 3c1o_A          154 NCFGA  158 (321)
T ss_dssp             CEEHH
T ss_pred             ceecc
Confidence            66444

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.58  E-value=0.017  Score=45.44  Aligned_cols=126  Identities=17%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-ee---cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~---~dl~~~l~~~~~~~~~DVV  110 (300)
                      |.+|+|+|+ |.+|+.+++.+.+. +.+++ ++|++.  .....+    ...+.. +.   .+.+.+.+ . ...++|+|
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~-g~~v~-~~d~~~--~~~~~~----~~~~~~~~~~d~~~~~~l~~-~-~~~~~d~v   74 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRM-GHEVL-AVDINE--EKVNAY----ASYATHAVIANATEENELLS-L-GIRNFEYV   74 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHT-TCCCE-EEESCH--HHHHTT----TTTCSEEEECCTTCHHHHHT-T-TGGGCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHH----HHhCCEEEEeCCCCHHHHHh-c-CCCCCCEE
Confidence            357999998 99999999988754 56655 456432  111111    112222 11   23333221 0 01368999


Q ss_pred             EEcCCch--hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHH
Q 022250          111 IDFTDAS--TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (300)
Q Consensus       111 IDfT~p~--~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a  176 (300)
                      |.++..+  .....+..+.+.+.+-++.... +.+..+.+.    +.|+..++.|....+-.+...+.
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~-~~~~~~~l~----~~g~~~vi~p~~~~~~~l~~~~~  137 (144)
T 2hmt_A           75 IVAIGANIQASTLTTLLLKELDIPNIWVKAQ-NYYHHKVLE----KIGADRIIHPEKDMGVKIAQSLS  137 (144)
T ss_dssp             EECCCSCHHHHHHHHHHHHHTTCSEEEEECC-SHHHHHHHH----HHTCSEEECHHHHHHHHHHHHHH
T ss_pred             EECCCCchHHHHHHHHHHHHcCCCeEEEEeC-CHHHHHHHH----HcCCCEEECccHHHHHHHHHHHh
Confidence            9887643  3345566677778765554321 223323333    35567788888777766655544

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.58  E-value=0.008  Score=54.49  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      +|||.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r   45 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRA-AGHDLVLIHR   45 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEec
Confidence            46999999999999999999886 4788887553

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.53  E-value=0.0066  Score=54.32  Aligned_cols=125  Identities=13%  Similarity=0.138  Sum_probs=70.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCc----chhhhhcCcCCCCccee-------cCHHHHHhcccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE----DIGMVCDMEQPLEIPVM-------SDLTMVLGSISQ  103 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~----d~~~~~g~~~~~gv~v~-------~dl~~~l~~~~~  103 (300)
                      |+||.|.|++|.+|+.+++.+.+. +.++++. +++....    ....+..+ ...++.+.       +++.++++    
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l-~R~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~l~~~~~----   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDL-GHPTFLL-VRESTASSNSEKAQLLESF-KASGANIVHGSIDDHASLVEAVK----   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEE-CCCCCTTTTHHHHHHHHHH-HTTTCEEECCCTTCHHHHHHHHH----
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCCEEEE-ECCcccccCHHHHHHHHHH-HhCCCEEEEeccCCHHHHHHHHc----
Confidence            578999999999999999998864 6777654 4332111    00000000 01233221       23445553    


Q ss_pred             cCCccEEEEcCCc---hhHHHHHHHHHHcC-CCEEEeCC-CCC--------H-----HHHHHHHHHhhhCCCeEE-EcCC
Q 022250          104 SKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASMGCL-IAPT  164 (300)
Q Consensus       104 ~~~~DVVIDfT~p---~~~~~~~~~al~~G-~~vVigTT-G~~--------~-----e~~~~L~~~a~~~~i~iv-~a~N  164 (300)
                        ++|+||.++.+   ......+..|.++| +.-++-++ |.+        +     .....++++.++.++++. +.|+
T Consensus        77 --~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~~r~~  154 (308)
T 1qyc_A           77 --NVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSN  154 (308)
T ss_dssp             --TCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTHHHHHHHHHHHHHHHHHHTCCBEEEECC
T ss_pred             --CCCEEEECCcchhhhhHHHHHHHHHhcCCCceEeecccccCccccccCCcchhHHHHHHHHHHHHHhcCCCeEEEEec
Confidence              68999988754   34567778888888 66555333 411        1     112345566666565543 4566


Q ss_pred             CcHH
Q 022250          165 LSIG  168 (300)
Q Consensus       165 ~SiG  168 (300)
                      +=.|
T Consensus       155 ~~~~  158 (308)
T 1qyc_A          155 CFAG  158 (308)
T ss_dssp             EEHH
T ss_pred             eecc
Confidence            5444

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.52  E-value=0.00051  Score=64.70  Aligned_cols=94  Identities=14%  Similarity=0.071  Sum_probs=61.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-cCCCC--cceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ..+|+|+|+ |.||+.+++.+....+.+-+.++|++.  ..+..++.. ....+  +.+++++++++.      ++|+||
T Consensus       129 ~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~--~~a~~la~~~~~~~g~~~~~~~~~~eav~------~aDiVi  199 (350)
T 1x7d_A          129 ARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDP--LATAKLIANLKEYSGLTIRRASSVAEAVK------GVDIIT  199 (350)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHTTCTTCEEEECSSHHHHHT------TCSEEE
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHHHHhccCceEEEeCCHHHHHh------cCCEEE
Confidence            368999997 999999999886656677788888753  222222210 01114  445789999984      789999


Q ss_pred             EcCCchhHHHHH-HHHHHcCCCEEEeC
Q 022250          112 DFTDASTVYDNV-KQATAFGMRSVVYV  137 (300)
Q Consensus       112 DfT~p~~~~~~~-~~al~~G~~vVigT  137 (300)
                      -+|+...+.+.+ ...++.|++++.-.
T Consensus       200 ~aTps~~~~pvl~~~~l~~G~~V~~vg  226 (350)
T 1x7d_A          200 TVTADKAYATIITPDMLEPGMHLNAVG  226 (350)
T ss_dssp             ECCCCSSEEEEECGGGCCTTCEEEECS
T ss_pred             EeccCCCCCceecHHHcCCCCEEEECC
Confidence            887653211111 24567899888543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.52  E-value=0.0051  Score=54.86  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=25.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .||.|+|+ |.+|+.+++.+.. .++.=+.++|.+
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~-~Gv~~i~lvD~d   64 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLAS-AGVGNLTLLDFD   64 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECCC
T ss_pred             CeEEEEee-CHHHHHHHHHHHH-cCCCeEEEEcCC
Confidence            68999998 9999999999875 455334467753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.49  E-value=0.0053  Score=55.83  Aligned_cols=116  Identities=16%  Similarity=0.147  Sum_probs=69.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..+|+|+|+ |+||+.+++.+.. -++++. ++|+..  .....+.    +.|+..  ++++++++      ..+|+||.
T Consensus       155 g~~v~IiG~-G~iG~~~a~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~l~~~l------~~aDvVi~  219 (293)
T 3d4o_A          155 GANVAVLGL-GRVGMSVARKFAA-LGAKVK-VGARES--DLLARIA----EMGMEPFHISKAAQEL------RDVDVCIN  219 (293)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESSH--HHHHHHH----HTTSEEEEGGGHHHHT------TTCSEEEE
T ss_pred             CCEEEEEee-CHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecChhhHHHHh------cCCCEEEE
Confidence            368999997 9999999998874 467765 466542  1111111    233333  35788887      47999998


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      .+++....+.....++.|.-+|--..|-..-.   + +.+++.|+.++..||+.-.+
T Consensus       220 ~~p~~~i~~~~l~~mk~~~~lin~ar~~~~~~---~-~~a~~~Gv~~~~~~~l~~~v  272 (293)
T 3d4o_A          220 TIPALVVTANVLAEMPSHTFVIDLASKPGGTD---F-RYAEKRGIKALLVPGLPGIV  272 (293)
T ss_dssp             CCSSCCBCHHHHHHSCTTCEEEECSSTTCSBC---H-HHHHHHTCEEEECCCHHHHH
T ss_pred             CCChHHhCHHHHHhcCCCCEEEEecCCCCCCC---H-HHHHHCCCEEEECCCCCccc
Confidence            88654332322333444443332222211111   2 44566778888889988776

>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}

Probab=96.43  E-value=0.022  Score=54.42  Aligned_cols=143  Identities=12%  Similarity=0.150  Sum_probs=85.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHh--------------------cCCcEEEEEEec--CCCCcchhhhhcC-----c---
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTK--------------------ARGMEVAGAIDS--HSVGEDIGMVCDM-----E---   83 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~--------------------~~~~eLvg~vd~--~~~g~d~~~~~g~-----~---   83 (300)
                      .||||+|+|. |..++.+++-+..                    .+|.+++|++|.  .+.|+++.+.+-.     .   
T Consensus        12 ~mIrVaIvGv-GnvASTlvqGv~~~r~g~~~~~G~p~~~~~p~~~~Di~vvgg~DId~~kvgk~l~eAi~~~~n~~~~~~   90 (394)
T 3cin_A           12 HMVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLT   90 (394)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCS
T ss_pred             ceeEEEEecC-CHHHHHHHHHHHHHHcCCCCCccccccccCCCCCCCcEEEEEecCCcchhHHHHHHHHhhchhcccccc
Confidence            3899999998 9999999887742                    135689999994  3456665432200     0   


Q ss_pred             --CC----------C-------Cccee----cCHHHHHhcccccCCccEEEEcCC------ch-----------------
Q 022250           84 --QP----------L-------EIPVM----SDLTMVLGSISQSKARAVVIDFTD------AS-----------------  117 (300)
Q Consensus        84 --~~----------~-------gv~v~----~dl~~~l~~~~~~~~~DVVIDfT~------p~-----------------  117 (300)
                        .+          .       +....    ++++++.++ .++.+.||||...+      +.                 
T Consensus        91 ~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~i~~~~k~-~~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~i  169 (394)
T 3cin_A           91 SDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKE-WTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERL  169 (394)
T ss_dssp             SCCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHH-HHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTC
T ss_pred             CccccccCcccccccCcCccccchhhhhhHHHhHHHHHHH-hhhccceeEeeecccccCCCCCCHHHHHHHhhccccccC
Confidence              00          0       00000    112222211 11246789998432      11                 


Q ss_pred             -hHHHHHHHHH-----HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH-HHHhc
Q 022250          118 -TVYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-AISAS  180 (300)
Q Consensus       118 -~~~~~~~~al-----~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~-a~~~~  180 (300)
                       +..-++..|+     +.|++.|-++|-+... ...+.++++++|+| +..--|-.|..++... +..+.
T Consensus       170 ~as~~YA~AAl~~aa~~aG~~fvN~~P~~ia~-~P~~~ela~~~gvp-i~GdD~ktG~T~~k~~L~~~l~  237 (394)
T 3cin_A          170 TATQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLV-VFGDDGATGATPFTADVLSHLA  237 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEE-EECSSBSCSHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhhhhhcCCceecCCCccccC-cHHHHHHHHHcCCc-EecccccccchhHHHHHHHHHH
Confidence             2222334444     8999999999966532 24578889999998 4566799999987653 44443

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.40  E-value=0.0098  Score=53.28  Aligned_cols=92  Identities=21%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCc---chhhhhcCcCCCCccee----c---CHHHHHhccccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE---DIGMVCDMEQPLEIPVM----S---DLTMVLGSISQS  104 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~---d~~~~~g~~~~~gv~v~----~---dl~~~l~~~~~~  104 (300)
                      |++|.|.|+||.+|+.+++.+.+. +.++++.. ++....   ....+..+ ...++.+.    +   ++.+++      
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~-R~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~l~~~~------   74 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLF-RPEVVSNIDKVQMLLYF-KQLGAKLIEASLDDHQRLVDAL------   74 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEEC-CSCCSSCHHHHHHHHHH-HTTTCEEECCCSSCHHHHHHHH------
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCcEEEEE-CCCcccchhHHHHHHHH-HhCCeEEEeCCCCCHHHHHHHH------
Confidence            578999999999999999998864 67877644 332110   11000000 01233221    2   344555      


Q ss_pred             CCccEEEEcCCc-------hhHHHHHHHHHHcC-CCEEE
Q 022250          105 KARAVVIDFTDA-------STVYDNVKQATAFG-MRSVV  135 (300)
Q Consensus       105 ~~~DVVIDfT~p-------~~~~~~~~~al~~G-~~vVi  135 (300)
                      .++|+||.++.+       ......+..|.++| +.-++
T Consensus        75 ~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           75 KQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             TTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             hCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            378999987643       34566778888888 65444

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.40  E-value=0.0013  Score=58.76  Aligned_cols=105  Identities=11%  Similarity=0.079  Sum_probs=61.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (300)
                      ||+|+|+ |+||+.+++.+.+. +++ +.+++++.  ..+..++   ..++.. +++++++ .      ++|+||..|++
T Consensus       118 ~v~iiG~-G~~g~~~a~~l~~~-g~~-v~v~~r~~--~~~~~l~---~~~~~~-~~~~~~~-~------~~Divi~~tp~  181 (263)
T 2d5c_A          118 PALVLGA-GGAGRAVAFALREA-GLE-VWVWNRTP--QRALALA---EEFGLR-AVPLEKA-R------EARLLVNATRV  181 (263)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHT-TCC-EEEECSSH--HHHHHHH---HHHTCE-ECCGGGG-G------GCSEEEECSST
T ss_pred             eEEEECC-cHHHHHHHHHHHHC-CCE-EEEEECCH--HHHHHHH---HHhccc-hhhHhhc-c------CCCEEEEccCC
Confidence            8999998 99999999998764 554 45677642  2222222   122323 4566666 4      68999988876


Q ss_pred             hhHH---HHH-HHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250          117 STVY---DNV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       117 ~~~~---~~~-~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      ..+.   ..+ ..+++.|..++ -.. .++.+. +|.+.+++.++.++
T Consensus       182 ~~~~~~~~~l~~~~l~~g~~vi-D~~-~~p~~t-~l~~~a~~~g~~~v  226 (263)
T 2d5c_A          182 GLEDPSASPLPAELFPEEGAAV-DLV-YRPLWT-RFLREAKAKGLKVQ  226 (263)
T ss_dssp             TTTCTTCCSSCGGGSCSSSEEE-ESC-CSSSSC-HHHHHHHHTTCEEE
T ss_pred             CCCCCCCCCCCHHHcCCCCEEE-Eee-cCCccc-HHHHHHHHCcCEEE
Confidence            6321   111 23455666444 322 222222 36677777777644

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.35  E-value=0.024  Score=52.65  Aligned_cols=73  Identities=18%  Similarity=0.147  Sum_probs=46.4

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhh-cCcCCCCcceecCHHHHHhcccccC
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~  105 (300)
                      ++++||+|+|+ |.||..++..+... ++ + +..+|.+..   +  .+..... -......+..++|+++.+      .
T Consensus         7 ~~~~kI~VIGa-G~vG~~lA~~la~~-g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~------~   77 (331)
T 1pzg_A            7 QRRKKVAMIGS-GMIGGTMGYLCALR-ELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL------T   77 (331)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHH-TCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH------T
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhC-CCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHh------C
Confidence            34689999998 99999999988764 44 7 667886531   1  1111100 000122345568998777      4


Q ss_pred             CccEEEEcC
Q 022250          106 ARAVVIDFT  114 (300)
Q Consensus       106 ~~DVVIDfT  114 (300)
                      ++|+||...
T Consensus        78 ~aDiVi~a~   86 (331)
T 1pzg_A           78 GADCVIVTA   86 (331)
T ss_dssp             TCSEEEECC
T ss_pred             CCCEEEEcc
Confidence            789998654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.35  E-value=0.0054  Score=55.35  Aligned_cols=107  Identities=15%  Similarity=0.123  Sum_probs=64.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..||+|+|+ |.||+.++..+.+. +++ +.+++++.  ..+.+++   ..+++.+++++++++.      ++|+||..|
T Consensus       129 ~~~v~iiGa-G~~g~aia~~L~~~-g~~-V~v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------~aDiVi~at  194 (275)
T 2hk9_A          129 EKSILVLGA-GGASRAVIYALVKE-GAK-VFLWNRTK--EKAIKLA---QKFPLEVVNSPEEVID------KVQVIVNTT  194 (275)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHH-TCE-EEEECSSH--HHHHHHT---TTSCEEECSCGGGTGG------GCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHc-CCE-EEEEECCH--HHHHHHH---HHcCCeeehhHHhhhc------CCCEEEEeC
Confidence            368999998 99999999998765 565 45677642  2233333   3456666667877773      789999888


Q ss_pred             CchhHH---HHH-HHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250          115 DASTVY---DNV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       115 ~p~~~~---~~~-~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      ++....   +.+ ...++.|.-++--.+ ..    ..+.+.+++.++.++
T Consensus       195 p~~~~~~~~~~i~~~~l~~g~~viDv~~-~~----t~ll~~a~~~g~~~v  239 (275)
T 2hk9_A          195 SVGLKDEDPEIFNYDLIKKDHVVVDIIY-KE----TKLLKKAKEKGAKLL  239 (275)
T ss_dssp             STTSSTTCCCSSCGGGCCTTSEEEESSS-SC----CHHHHHHHHTTCEEE
T ss_pred             CCCCCCCCCCCCCHHHcCCCCEEEEcCC-Ch----HHHHHHHHHCcCEEE
Confidence            765421   112 123444554443223 21    224555666666544

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=96.34  E-value=0.013  Score=53.29  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=28.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~v   67 (300)
                      |++|.|.|++|.+|+.+++.+.+.. +.++++..
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~   37 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   37 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEe
Confidence            5799999999999999999988653 78888754

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.32  E-value=0.00063  Score=58.90  Aligned_cols=91  Identities=12%  Similarity=0.057  Sum_probs=54.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      +.+||+|+|+ |+||+.+++.+.+ .++++. +++++..   ...+.    ..++... ++++++      ..+|+||-+
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~-~G~~V~-~~~r~~~---~~~~~----~~g~~~~-~~~~~~------~~aDvVila   80 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQ-CGYSVV-FGSRNPQ---VSSLL----PRGAEVL-CYSEAA------SRSDVIVLA   80 (201)
Confidence            3578999997 9999999998874 456655 3565421   11121    2345544 666766      378999977


Q ss_pred             CCchhHHHHHHHH-HHcCCCEEEeCCCCC
Q 022250          114 TDASTVYDNVKQA-TAFGMRSVVYVPHIQ  141 (300)
Q Consensus       114 T~p~~~~~~~~~a-l~~G~~vVigTTG~~  141 (300)
                      +.+....+.+... ...+.-+|.-++|.+
T Consensus        81 v~~~~~~~v~~l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           81 VHREHYDFLAELADSLKGRVLIDVSNNQK  109 (201)
Confidence            7766544433211 123444454455764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.30  E-value=0.004  Score=57.21  Aligned_cols=117  Identities=14%  Similarity=0.119  Sum_probs=66.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc--C-CC------CcceecCHHHHHhccccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--Q-PL------EIPVMSDLTMVLGSISQS  104 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~--~-~~------gv~v~~dl~~~l~~~~~~  104 (300)
                      |+|||+|+|+ |.||..++..+.+ .+.++.. ++++.. +.+.+ .|+.  . ..      .+.+++|++++.      
T Consensus         1 M~mkI~IiGa-GaiG~~~a~~L~~-~g~~V~~-~~r~~~-~~i~~-~Gl~~~~~~~g~~~~~~~~~~~~~~~~~------   69 (320)
T 3i83_A            1 MSLNILVIGT-GAIGSFYGALLAK-TGHCVSV-VSRSDY-ETVKA-KGIRIRSATLGDYTFRPAAVVRSAAELE------   69 (320)
T ss_dssp             --CEEEEESC-CHHHHHHHHHHHH-TTCEEEE-ECSTTH-HHHHH-HCEEEEETTTCCEEECCSCEESCGGGCS------
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHh-CCCeEEE-EeCChH-HHHHh-CCcEEeecCCCcEEEeeeeeECCHHHcC------
Confidence            5689999998 9999999998875 4667654 555431 11111 0100  0 01      234567777664      


Q ss_pred             CCccEEEEcCCchhHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          105 KARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      .++|+||-++.+....+.+...   +..+..+|.-.-|+..+  +.|.+....  -+++.++++
T Consensus        70 ~~~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~--~~l~~~~~~--~~vl~g~~~  129 (320)
T 3i83_A           70 TKPDCTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE--PEVAAAFPD--NEVISGLAF  129 (320)
T ss_dssp             SCCSEEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS--HHHHHHSTT--SCEEEEEEE
T ss_pred             CCCCEEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH--HHHHHHCCC--CcEEEEEEE
Confidence            3789999888766655544433   33455667666788632  234444333  244554443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.28  E-value=0.012  Score=49.66  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=27.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |||.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~-~g~~V~~~~R   32 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKN-RGHEVTAIVR   32 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CeEEEEcCCchhHHHHHHHHHh-CCCEEEEEEc
Confidence            5899999999999999999886 4788887553

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.27  E-value=0.016  Score=54.14  Aligned_cols=102  Identities=9%  Similarity=-0.011  Sum_probs=60.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .++|+|+|+ |+||+.+++.+.. -++++.+ +|+...  .         ..++..+.++++++.      .+|+|+...
T Consensus       164 g~~vgIIG~-G~iG~~vA~~l~~-~G~~V~~-~dr~~~--~---------~~g~~~~~~l~ell~------~aDvVil~v  223 (333)
T 3ba1_A          164 GKRVGIIGL-GRIGLAVAERAEA-FDCPISY-FSRSKK--P---------NTNYTYYGSVVELAS------NSDILVVAC  223 (333)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHT-TTCCEEE-ECSSCC--T---------TCCSEEESCHHHHHH------TCSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEE-ECCCch--h---------ccCceecCCHHHHHh------cCCEEEEec
Confidence            468999998 9999999998874 5788654 665431  1         113445678999885      789999777


Q ss_pred             Cchh-HHH----HHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCC
Q 022250          115 DAST-VYD----NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (300)
Q Consensus       115 ~p~~-~~~----~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i  157 (300)
                      ++.. +..    .....++.|.-+|...+|...+ .++|.++.++.++
T Consensus       224 P~~~~t~~li~~~~l~~mk~gailIn~srG~~vd-~~aL~~aL~~g~i  270 (333)
T 3ba1_A          224 PLTPETTHIINREVIDALGPKGVLINIGRGPHVD-EPELVSALVEGRL  270 (333)
T ss_dssp             CCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBC-HHHHHHHHHHTSS
T ss_pred             CCChHHHHHhhHHHHhcCCCCCEEEECCCCchhC-HHHHHHHHHcCCC
Confidence            6432 211    1223444554444333443221 2345555555434

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.25  E-value=0.0095  Score=51.28  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=29.1

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~v   67 (300)
                      ++++|.|.|++|.+|+.+++.+.+.. +.++++..
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~   37 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   37 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEE
Confidence            46789999999999999999998765 78888754

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.23  E-value=0.0071  Score=56.34  Aligned_cols=104  Identities=16%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .++|+|+|+ |+||+.+++.+.. -+++++ ++|+... .+   ..   ...|+.. .++++++.      .+|+|+...
T Consensus       146 g~~vgIIG~-G~iG~~vA~~l~~-~G~~V~-~~d~~~~-~~---~~---~~~g~~~-~~l~e~l~------~aDiVil~v  208 (333)
T 2d0i_A          146 GKKVGILGM-GAIGKAIARRLIP-FGVKLY-YWSRHRK-VN---VE---KELKARY-MDIDELLE------KSDIVILAL  208 (333)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGG-GTCEEE-EECSSCC-HH---HH---HHHTEEE-CCHHHHHH------HCSEEEECC
T ss_pred             cCEEEEEcc-CHHHHHHHHHHHH-CCCEEE-EECCCcc-hh---hh---hhcCcee-cCHHHHHh------hCCEEEEcC
Confidence            478999998 9999999998874 578875 4676431 11   11   1234433 48888884      789999877


Q ss_pred             Cch-hH----HHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCe
Q 022250          115 DAS-TV----YDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG  158 (300)
Q Consensus       115 ~p~-~~----~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~  158 (300)
                      ++. .+    .+.....++.|  +++-+. |..-+ .++|.++.++..+.
T Consensus       209 p~~~~t~~~i~~~~~~~mk~g--ilin~srg~~vd-~~aL~~aL~~~~i~  255 (333)
T 2d0i_A          209 PLTRDTYHIINEERVKKLEGK--YLVNIGRGALVD-EKAVTEAIKQGKLK  255 (333)
T ss_dssp             CCCTTTTTSBCHHHHHHTBTC--EEEECSCGGGBC-HHHHHHHHHTTCBC
T ss_pred             CCChHHHHHhCHHHHhhCCCC--EEEECCCCcccC-HHHHHHHHHcCCce
Confidence            654 22    12223345556  555443 42211 23455555554443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.21  E-value=0.023  Score=48.97  Aligned_cols=33  Identities=18%  Similarity=0.402  Sum_probs=28.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      .+||.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~-~G~~V~~~~R   53 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKN-KGHEPVAMVR   53 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCeEEEECCCChHHHHHHHHHHh-CCCeEEEEEC
Confidence            47999999999999999999886 5788887553

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.19  E-value=0.038  Score=50.74  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=29.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (300)
                      +++|.|.|++|.+|+.+++.+.+. .+.++++...
T Consensus        10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A           10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            579999999999999999999864 6899887653

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.18  E-value=0.019  Score=50.99  Aligned_cols=94  Identities=18%  Similarity=0.163  Sum_probs=56.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC----cce-ecCHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE----IPV-MSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g----v~v-~~dl~~~l~~~~~~~~~DVV  110 (300)
                      |||+|+|+ |.||..++..+.+ .+.++.. ++++.  .....+.-. ...+    ..+ .++. +.+.      ++|+|
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~-~g~~V~~-~~r~~--~~~~~l~~~-~~~~~~~~~~~~~~~~-~~~~------~~d~v   67 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCK-QGHEVQG-WLRVP--QPYCSVNLV-ETDGSIFNESLTANDP-DFLA------TSDLL   67 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSC--CSEEEEEEE-CTTSCEEEEEEEESCH-HHHH------TCSEE
T ss_pred             CeEEEECc-CHHHHHHHHHHHh-CCCCEEE-EEcCc--cceeeEEEE-cCCCceeeeeeeecCc-cccC------CCCEE
Confidence            58999998 9999999998875 4677654 56542  111111100 0011    111 2444 4443      68999


Q ss_pred             EEcCCchhHHHHHHHHHH---cCCCEEEeCCCCCH
Q 022250          111 IDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~---~G~~vVigTTG~~~  142 (300)
                      |-++.+..+.+.+.....   .+..+|.-+.|+..
T Consensus        68 i~~v~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           68 LVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             EECSCGGGHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             EEEecHHhHHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            988888777666654443   35566666778743

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.18  E-value=0.0093  Score=56.02  Aligned_cols=66  Identities=18%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|+ |+||+.+++.+.. -++++++ +|+... ....      ...|+..+.++++++.      .+|+|+...
T Consensus       168 g~tvGIIG~-G~IG~~vA~~l~~-~G~~V~~-~d~~~~-~~~~------~~~g~~~~~~l~ell~------~aDvV~l~~  231 (347)
T 1mx3_A          168 GETLGIIGL-GRVGQAVALRAKA-FGFNVLF-YDPYLS-DGVE------RALGLQRVSTLQDLLF------HSDCVTLHC  231 (347)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCEEEE-ECTTSC-TTHH------HHHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHH-CCCEEEE-ECCCcc-hhhH------hhcCCeecCCHHHHHh------cCCEEEEcC
Confidence            368999997 9999999998874 5888764 675431 1111      1234445568999985      689999776


Q ss_pred             Cc
Q 022250          115 DA  116 (300)
Q Consensus       115 ~p  116 (300)
                      +.
T Consensus       232 P~  233 (347)
T 1mx3_A          232 GL  233 (347)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.17  E-value=0.011  Score=52.80  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=28.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~v   67 (300)
                      |++||.|.|++|.+|+.+++.+.+. ++.++++..
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~   35 (312)
T 2yy7_A            1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASD   35 (312)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred             CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEc
Confidence            4578999999999999999999875 467777654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.16  E-value=0.018  Score=50.98  Aligned_cols=33  Identities=15%  Similarity=0.143  Sum_probs=27.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ||+||.|.|+ |.+|+.+++.+.+. +.++++...
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~-g~~V~~~~r   36 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQ-GWRIIGTSR   36 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGG-TCEEEEEES
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHC-CCEEEEEEc
Confidence            5789999998 99999999998864 788887654

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.16  E-value=0.029  Score=50.73  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=28.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |||.|.|++|.+|+.+++.+.+.++.++++...
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   33 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence            489999999999999999998766888887543

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.16  E-value=0.012  Score=52.90  Aligned_cols=88  Identities=15%  Similarity=0.162  Sum_probs=49.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |++||.|.|++|.+|+.+++.+.+ .+.++++.......+   + +.    ..++.-.++++++++.    ..+|+||.+
T Consensus         1 m~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~---~-~~----~~Dl~d~~~~~~~~~~----~~~d~vih~   67 (315)
T 2ydy_A            1 MNRRVLVTGATGLLGRAVHKEFQQ-NNWHAVGCGFRRARP---K-FE----QVNLLDSNAVHHIIHD----FQPHVIVHC   67 (315)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEC--------------------------CHHHHHH----HCCSEEEEC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHh-CCCeEEEEccCCCCC---C-eE----EecCCCHHHHHHHHHh----hCCCEEEEC
Confidence            457899999999999999999885 578887654221100   0 11    1122222455666641    258999987


Q ss_pred             CCc------------------hhHHHHHHHHHHcCCCEE
Q 022250          114 TDA------------------STVYDNVKQATAFGMRSV  134 (300)
Q Consensus       114 T~p------------------~~~~~~~~~al~~G~~vV  134 (300)
                      ...                  ......++.|.++|+.+|
T Consensus        68 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  106 (315)
T 2ydy_A           68 AAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLI  106 (315)
T ss_dssp             C-------------------CHHHHHHHHHHHHHTCEEE
T ss_pred             CcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            532                  123456677777777766

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.15  E-value=0.022  Score=52.28  Aligned_cols=106  Identities=14%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC-------cCCCCcceecCHHHHHhccc
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM-------EQPLEIPVMSDLTMVLGSIS  102 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~-------~~~~gv~v~~dl~~~l~~~~  102 (300)
                      .-+++||+|+|+ |.||..++..+.+ .+.++....+..    .+..+.  |.       .....+..+++++++     
T Consensus        16 ~~~~~kI~IiGa-Ga~G~~~a~~L~~-~G~~V~l~~~~~----~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-----   84 (318)
T 3hwr_A           16 YFQGMKVAIMGA-GAVGCYYGGMLAR-AGHEVILIARPQ----HVQAIEATGLRLETQSFDEQVKVSASSDPSAV-----   84 (318)
T ss_dssp             ----CEEEEESC-SHHHHHHHHHHHH-TTCEEEEECCHH----HHHHHHHHCEEEECSSCEEEECCEEESCGGGG-----
T ss_pred             hccCCcEEEECc-CHHHHHHHHHHHH-CCCeEEEEEcHh----HHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHc-----
Confidence            445789999998 9999999998875 467776552211    111110  10       001233445676553     


Q ss_pred             ccCCccEEEEcCCchhHHHHHHHHH---HcCCCEEEeCCCCCHHHHHHHHHHh
Q 022250          103 QSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFC  152 (300)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTTG~~~e~~~~L~~~a  152 (300)
                        .++|+||-++.+..+.+.+....   ..+..+|.-+-|+..++  .|.+..
T Consensus        85 --~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--~l~~~~  133 (318)
T 3hwr_A           85 --QGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENAD--TLRSLL  133 (318)
T ss_dssp             --TTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH--HHHHHC
T ss_pred             --CCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH--HHHHHc
Confidence              47899998887776666665443   33555666677998642  444443

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=96.15  E-value=0.02  Score=50.66  Aligned_cols=28  Identities=14%  Similarity=0.305  Sum_probs=24.2

Q ss_pred             CCCCcceEEEEcCCchHHHHHHHHHHhc
Q 022250           31 PPQSNIKVIINGAVKEIGRAAVIAVTKA   58 (300)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~   58 (300)
                      |..+|+||.|.|++|.+|+.+++.+.+.
T Consensus         2 ~~~~~~~vlVtGatG~iG~~l~~~L~~~   29 (319)
T 4b8w_A            2 LYFQSMRILVTGGSGLVGKAIQKVVADG   29 (319)
T ss_dssp             CCCCCCEEEEETCSSHHHHHHHHHHHTT
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhc
Confidence            4445789999999999999999998864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.13  E-value=0.011  Score=50.94  Aligned_cols=122  Identities=18%  Similarity=0.218  Sum_probs=66.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||.|+|+ |++|+.+++.+.+ .+.+++ ++|.+.  ..+..+.   ...++.++    .+.+.+.+.  .-.++|++|
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~-~g~~v~-vid~~~--~~~~~l~---~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLS-RKYGVV-IINKDR--ELCEEFA---KKLKATIIHGDGSHKEILRDA--EVSKNDVVV   70 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHH-TTCCEE-EEESCH--HHHHHHH---HHSSSEEEESCTTSHHHHHHH--TCCTTCEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCeEE-EEECCH--HHHHHHH---HHcCCeEEEcCCCCHHHHHhc--CcccCCEEE
Confidence            58999998 9999999999875 477766 466542  1122221   11233222    222222110  014789999


Q ss_pred             EcCCchhHHHHH-HHHHH-cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250          112 DFTDASTVYDNV-KQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (300)
Q Consensus       112 DfT~p~~~~~~~-~~al~-~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll  172 (300)
                      -++..+.....+ ..+.+ ++..-++...- +++..+.+    ++.|+-.+++|....+-.+.
T Consensus        71 ~~~~~d~~n~~~~~~a~~~~~~~~iia~~~-~~~~~~~l----~~~G~d~vi~p~~~~~~~l~  128 (218)
T 3l4b_C           71 ILTPRDEVNLFIAQLVMKDFGVKRVVSLVN-DPGNMEIF----KKMGITTVLNLTTLITNTVE  128 (218)
T ss_dssp             ECCSCHHHHHHHHHHHHHTSCCCEEEECCC-SGGGHHHH----HHHTCEECCCHHHHHHHHHH
T ss_pred             EecCCcHHHHHHHHHHHHHcCCCeEEEEEe-CcchHHHH----HHCCCCEEECHHHHHHHHHH
Confidence            777665544433 34444 56665555432 23343444    34456667877766554433

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.12  E-value=0.014  Score=53.43  Aligned_cols=105  Identities=12%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc-----CCC---CcceecCHHHHHhcccccC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-----QPL---EIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-----~~~---gv~v~~dl~~~l~~~~~~~  105 (300)
                      |++||+|+|+ |.||..++..+.+ .+.++. +++++.. +.+.+ -|+.     ...   .+.++++.+++       .
T Consensus         1 M~mkI~IiGa-GaiG~~~a~~L~~-~g~~V~-~~~r~~~-~~i~~-~g~~~~~~~g~~~~~~~~~~~~~~~~-------~   68 (312)
T 3hn2_A            1 MSLRIAIVGA-GALGLYYGALLQR-SGEDVH-FLLRRDY-EAIAG-NGLKVFSINGDFTLPHVKGYRAPEEI-------G   68 (312)
T ss_dssp             ---CEEEECC-STTHHHHHHHHHH-TSCCEE-EECSTTH-HHHHH-TCEEEEETTCCEEESCCCEESCHHHH-------C
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEEcCcH-HHHHh-CCCEEEcCCCeEEEeeceeecCHHHc-------C
Confidence            5689999998 9999999998875 355654 4554321 11110 0110     001   23456777663       4


Q ss_pred             CccEEEEcCCchhHHHHHHHHH---HcCCCEEEeCCCCCHHHHHHHHHHh
Q 022250          106 ARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFC  152 (300)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTTG~~~e~~~~L~~~a  152 (300)
                      ++|+||-++.+....+.+....   ..+..+|+-.-|+..++  .|.+..
T Consensus        69 ~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~--~l~~~~  116 (312)
T 3hn2_A           69 PMDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEE--ALATLF  116 (312)
T ss_dssp             CCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHH--HHHHHT
T ss_pred             CCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHH--HHHHHC
Confidence            7899998887777666555443   34555666566997432  344443

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.10  E-value=0.021  Score=52.00  Aligned_cols=33  Identities=21%  Similarity=0.170  Sum_probs=28.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ++||.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   57 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLK-LNQVVIGLDN   57 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence            57999999999999999999885 5788887654

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.09  E-value=0.01  Score=52.66  Aligned_cols=83  Identities=22%  Similarity=0.296  Sum_probs=53.0

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      +..+||.|.|++|.+|+.+++.+.+ .+.++++. ++..  -|+.            -.++++++++.    ..+|+||.
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~-~r~~--~Dl~------------d~~~~~~~~~~----~~~d~vih   69 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKG-KNVEVIPT-DVQD--LDIT------------NVLAVNKFFNE----KKPNVVIN   69 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTT-SSEEEEEE-CTTT--CCTT------------CHHHHHHHHHH----HCCSEEEE
T ss_pred             cccceEEEECCCChHHHHHHHHHHh-CCCeEEec-cCcc--CCCC------------CHHHHHHHHHh----cCCCEEEE
Confidence            4469999999999999999999875 57887764 4321  1111            12245566641    26899998


Q ss_pred             cCCch------------------hHHHHHHHHHHcCCCEEE
Q 022250          113 FTDAS------------------TVYDNVKQATAFGMRSVV  135 (300)
Q Consensus       113 fT~p~------------------~~~~~~~~al~~G~~vVi  135 (300)
                      +....                  .....++.|.++|+.+|.
T Consensus        70 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~  110 (292)
T 1vl0_A           70 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQ  110 (292)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEE
T ss_pred             CCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            76321                  124556677777776663

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.05  E-value=0.012  Score=55.18  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=26.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||.|+|+ |..|..+++.+.. .++.=+.++|.
T Consensus        34 ~~~VlIvGa-GGlGs~va~~La~-aGVg~ItlvD~   66 (340)
T 3rui_A           34 NTKVLLLGA-GTLGCYVSRALIA-WGVRKITFVDN   66 (340)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCCEEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-cCCCEEEEecC
Confidence            368999998 9999999999885 57655667774

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.05  E-value=0.04  Score=49.89  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=28.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |++||.|.|++|.+|+.+++.+.+ .+.++++.+.
T Consensus         8 ~~~~vlVTGatGfIG~~l~~~Ll~-~G~~V~~~~r   41 (338)
T 2rh8_A            8 GKKTACVVGGTGFVASLLVKLLLQ-KGYAVNTTVR   41 (338)
T ss_dssp             -CCEEEEECTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEc
Confidence            467999999999999999999885 5889887654

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=96.04  E-value=0.0057  Score=57.64  Aligned_cols=153  Identities=17%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             CCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------------CCc------chhhhhcCcCCCCccee
Q 022250           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGE------DIGMVCDMEQPLEIPVM   91 (300)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~------d~~~~~g~~~~~gv~v~   91 (300)
                      |+.|++||+|+|+ ||+||.+.+.+.+. ++++|++=|...             .|+      ..+..+-. ....+.++
T Consensus        17 ~~~~~~kVaInGf-GrIGr~vlr~l~e~-~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i-~Gk~I~v~   93 (356)
T 3hja_A           17 QGPGSMKLAINGF-GRIGRNVFKIAFER-GIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVV-DGREIKII   93 (356)
T ss_dssp             -----CEEEEECC-SHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEE-TTEEEEEE
T ss_pred             cCCCCeEEEEECC-CHHHHHHHHHHHHC-CCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEE-CCEEEEEE
Confidence            3456799999999 99999999998876 899999865310             000      00000000 00123343


Q ss_pred             c--CHHHHHhcccccCCccEEEEcCCchhH----HHHHHHHHH-cCCC-EEEeCCC----------CCHHHHHHHHHHhh
Q 022250           92 S--DLTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATA-FGMR-SVVYVPH----------IQLETVSALSAFCD  153 (300)
Q Consensus        92 ~--dl~~~l~~~~~~~~~DVVIDfT~p~~~----~~~~~~al~-~G~~-vVigTTG----------~~~e~~~~L~~~a~  153 (300)
                      .  |++++-=   .+..+|+|++.|-....    .+.+...++ .|.. |||..|.          .+++.++      .
T Consensus        94 ~~~dp~~i~w---~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~d~vp~vV~gVN~~~~~------~  164 (356)
T 3hja_A           94 AERDPKNLPW---AKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDIN------S  164 (356)
T ss_dssp             CCSSGGGCCH---HHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCSSCCEECCTTTSGGGCC------T
T ss_pred             EcCChhhCCc---cccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCCCCCCEEeccCCHHHcC------c
Confidence            2  3332200   01368999987644444    666777777 7754 6665443          3333221      1


Q ss_pred             hCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeE---EEEccC----CC-CCCCc
Q 022250          154 KASMGCLIAPTLSIGSILLQQAAISASFHYKNVE---IVESRP----NA-RDFPS  200 (300)
Q Consensus       154 ~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~die---IiE~Hh----~K-~DaPS  200 (300)
                      +  -.++  +|=|--.|-|.-+++.+-.. |.|+   +.-.|.    +| .|.|+
T Consensus       165 ~--~~II--SNaSCTTn~Lap~lkvL~d~-fGI~~g~mTTvhA~T~~Q~~~D~p~  214 (356)
T 3hja_A          165 D--LKAV--SNASCTTNCLAPLAKVLHES-FGIEQGLMTTVHAYTNDQRILDLPH  214 (356)
T ss_dssp             T--CCEE--ECCCHHHHHHHHHHHHHHHH-HCEEEEEEEEEEECCTTSBSSSCCC
T ss_pred             C--ccEE--ECCccchhhhhHhHHHHHHh-cCeEEEEEEEEEecccccccccCcc
Confidence            1  2344  66677777666666665432 2333   233363    23 58887

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.04  E-value=0.021  Score=51.57  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=27.9

Q ss_pred             CCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |.++++||.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r   46 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLE-KGYRVHGLVA   46 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHH-CCCeEEEEeC
Confidence            346679999999999999999999886 4788887554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.03  E-value=0.034  Score=53.31  Aligned_cols=123  Identities=13%  Similarity=0.141  Sum_probs=72.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVV  110 (300)
                      .++|.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  ..+..+    ...|++++    ++.+.+...  .-.++|+|
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~-~g~~vvv-Id~d~--~~v~~~----~~~g~~vi~GDat~~~~L~~a--gi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLS-SGVKMVV-LDHDP--DHIETL----RKFGMKVFYGDATRMDLLESA--GAAKAEVL   72 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCEEE-EECCH--HHHHHH----HHTTCCCEESCTTCHHHHHHT--TTTTCSEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-CCCCEEE-EECCH--HHHHHH----HhCCCeEEEcCCCCHHHHHhc--CCCccCEE
Confidence            368999998 9999999998875 5677664 56542  111211    12344443    233322210  11468988


Q ss_pred             EEcCCc-hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250          111 IDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (300)
Q Consensus       111 IDfT~p-~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll  172 (300)
                      |-.+.. +.....+..+.+.+.++-|-.-..++++...|.+    .|+-.++.|++-.+..+.
T Consensus        73 iv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~~----~Gad~Vi~~~~~~a~~la  131 (413)
T 3l9w_A           73 INAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQ----AGVEKPERETFEGALKTG  131 (413)
T ss_dssp             EECCSSHHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH----TTCSSCEETTHHHHHHHH
T ss_pred             EECCCChHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHH----CCCCEEECccHHHHHHHH
Confidence            876653 4445666777777755222222334555555643    456668889997777654

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.02  E-value=0.019  Score=51.57  Aligned_cols=62  Identities=15%  Similarity=0.060  Sum_probs=40.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ++||.|.|++|.+|+.+++.+.+ .+.+++++ ++... -|            +.-.++++++++.    .++|+||.+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~-~g~~v~~~-~r~~~-~D------------~~d~~~~~~~~~~----~~~d~vih~a   63 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQ-RGDVELVL-RTRDE-LN------------LLDSRAVHDFFAS----ERIDQVYLAA   63 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTT-CTTEEEEC-CCTTT-CC------------TTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCeEEEE-ecCcc-CC------------ccCHHHHHHHHHh----cCCCEEEEcC
Confidence            47999999999999999999875 57887764 32210 11            1112345556531    2789999876


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      .
T Consensus        64 ~   64 (321)
T 1e6u_A           64 A   64 (321)
T ss_dssp             C
T ss_pred             e
Confidence            3

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.00  E-value=0.013  Score=51.72  Aligned_cols=116  Identities=12%  Similarity=0.176  Sum_probs=67.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcce-------ecCHHHHHhcccccCCcc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D  108 (300)
                      ||.|.|++|.+|+.+++.+.+. ++.++++......   ....+.    ..++.+       .+++++++      .++|
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~---~~~~~~----~~~~~~~~~D~~d~~~~~~~~------~~~d   67 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPA---KAQALA----AQGITVRQADYGDEAALTSAL------QGVE   67 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTT---TCHHHH----HTTCEEEECCTTCHHHHHHHT------TTCS
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChH---hhhhhh----cCCCeEEEcCCCCHHHHHHHH------hCCC
Confidence            5899999999999999998865 4788877543221   111111    011211       12344455      3689


Q ss_pred             EEEEcCCc------hhHHHHHHHHHHcCCC-EE-EeCCCC------CHHHHHHHHHHhhhCCCeEE-EcCCC
Q 022250          109 VVIDFTDA------STVYDNVKQATAFGMR-SV-VYVPHI------QLETVSALSAFCDKASMGCL-IAPTL  165 (300)
Q Consensus       109 VVIDfT~p------~~~~~~~~~al~~G~~-vV-igTTG~------~~e~~~~L~~~a~~~~i~iv-~a~N~  165 (300)
                      +||.++.+      ......++.|.++|+. +| +++.+.      ........+++.++.++++. +-|++
T Consensus        68 ~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~y~~sK~~~e~~~~~~~~~~~ilrp~~  139 (286)
T 2zcu_A           68 KLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGW  139 (286)
T ss_dssp             EEEECC--------CHHHHHHHHHHHHTCCEEEEEEETTTTTCCSTTHHHHHHHHHHHHHHCSEEEEEEECC
T ss_pred             EEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCcchhHHHHHHHHHHHHHcCCCeEEEeChH
Confidence            99987643      3456667778888864 44 333221      12233455666666666644 45665

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.98  E-value=0.016  Score=51.63  Aligned_cols=94  Identities=20%  Similarity=0.253  Sum_probs=55.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcc----hhhhhcCcCCCCccee-------cCHHHHHhcccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED----IGMVCDMEQPLEIPVM-------SDLTMVLGSISQ  103 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d----~~~~~g~~~~~gv~v~-------~dl~~~l~~~~~  103 (300)
                      |++|.|.|++|.+|+.+++.+.+. +.++++.........+    ...+..+ ...++.+.       +++.+++     
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~l~~~~-----   74 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRKTITAANPETKEELIDNY-QSLGVILLEGDINDHETLVKAI-----   74 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCSCCSSCHHHHHHHHHHH-HHTTCEEEECCTTCHHHHHHHH-----
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEECCCcccCChHHHHHHHHHH-HhCCCEEEEeCCCCHHHHHHHH-----
Confidence            578999999999999999998864 5777764432201111    0000000 01122221       2344555     


Q ss_pred             cCCccEEEEcCCc---hhHHHHHHHHHHcC-CCEEEe
Q 022250          104 SKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVY  136 (300)
Q Consensus       104 ~~~~DVVIDfT~p---~~~~~~~~~al~~G-~~vVig  136 (300)
                       ..+|+||.+..+   ......+..|.++| +.-++-
T Consensus        75 -~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~  110 (307)
T 2gas_A           75 -KQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFP  110 (307)
T ss_dssp             -TTCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEEC
T ss_pred             -hCCCEEEECCcccccccHHHHHHHHHhcCCceEEee
Confidence             368999987643   45567777888888 655553

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=95.97  E-value=0.01  Score=52.19  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=26.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      ||.+|.|.|++|.+|+.+++.+.+ .+.++++.
T Consensus         1 M~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~   32 (267)
T 3ay3_A            1 MLNRLLVTGAAGGVGSAIRPHLGT-LAHEVRLS   32 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHGGGGGG-TEEEEEEC
T ss_pred             CCceEEEECCCCHHHHHHHHHHHh-CCCEEEEE
Confidence            567899999999999999998875 46777654

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.97  E-value=0.011  Score=55.42  Aligned_cols=69  Identities=13%  Similarity=0.040  Sum_probs=46.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |+||+.+++.+...-+++++ ++|+...  .....    .+.++...+++++++.      .+|+|+...
T Consensus       163 g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~-~~d~~~~--~~~~~----~~~g~~~~~~l~ell~------~aDvVil~v  228 (348)
T 2w2k_A          163 GHVLGAVGL-GAIQKEIARKAVHGLGMKLV-YYDVAPA--DAETE----KALGAERVDSLEELAR------RSDCVSVSV  228 (348)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSSCC--CHHHH----HHHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHHhcCCEEE-EECCCCc--chhhH----hhcCcEEeCCHHHHhc------cCCEEEEeC
Confidence            368999998 99999999988624578876 4776431  11111    1224444568989885      789999877


Q ss_pred             Cch
Q 022250          115 DAS  117 (300)
Q Consensus       115 ~p~  117 (300)
                      ++.
T Consensus       229 p~~  231 (348)
T 2w2k_A          229 PYM  231 (348)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            653

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.96  E-value=0.027  Score=52.68  Aligned_cols=61  Identities=16%  Similarity=0.147  Sum_probs=44.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |+||+.+++.+. .-+++++ ++|+...  .         ..+...+.+++++++      .+|+|+-..
T Consensus       171 gktiGIIGl-G~IG~~vA~~l~-~~G~~V~-~~dr~~~--~---------~~~~~~~~sl~ell~------~aDvVil~v  230 (340)
T 4dgs_A          171 GKRIGVLGL-GQIGRALASRAE-AFGMSVR-YWNRSTL--S---------GVDWIAHQSPVDLAR------DSDVLAVCV  230 (340)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-TTTCEEE-EECSSCC--T---------TSCCEECSSHHHHHH------TCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEcCCcc--c---------ccCceecCCHHHHHh------cCCEEEEeC
Confidence            478999998 999999999887 4578876 4675431  1         123344678999985      789998665


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       231 P  231 (340)
T 4dgs_A          231 A  231 (340)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.95  E-value=0.029  Score=54.44  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=26.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +.||+|+|+ |.||..++..+.+ .+++++ ++|.+
T Consensus        37 ~~kV~VIGa-G~MG~~iA~~la~-~G~~V~-l~D~~   69 (463)
T 1zcj_A           37 VSSVGVLGL-GTMGRGIAISFAR-VGISVV-AVESD   69 (463)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHT-TTCEEE-EECSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEECC
Confidence            568999998 9999999998874 578866 46753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.93  E-value=0.02  Score=51.07  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=26.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ..||.|+|+ |.+|+.+++.+.. .++.=+.++|.+
T Consensus        28 ~~~VlvvG~-GglG~~va~~La~-~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGL-GGLGTPAALYLAG-AGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHH-TTCSEEEEECCC
T ss_pred             cCcEEEEcc-CHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            368999998 9999999999875 566556677753

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.92  E-value=0.013  Score=51.85  Aligned_cols=120  Identities=10%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCcce-------ecCHHHHHhcccccCCc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKAR  107 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~  107 (300)
                      ++|.|.|++|.+|+.+++.+.+. ++.++++......   ....+.    ..++.+       .+++++++      .++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~---~~~~l~----~~~~~~~~~D~~d~~~l~~~~------~~~   67 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE---KASTLA----DQGVEVRHGDYNQPESLQKAF------AGV   67 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTT---TTHHHH----HTTCEEEECCTTCHHHHHHHT------TTC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHH---HHhHHh----hcCCeEEEeccCCHHHHHHHH------hcC
Confidence            47999999999999999998865 4788887553221   111111    012211       12344455      368


Q ss_pred             cEEEEcCCc--------hhHHHHHHHHHHcCC-CEE-EeCCCC------CHHHHHHHHHHhhhCCCeEE-EcCCCcHH
Q 022250          108 AVVIDFTDA--------STVYDNVKQATAFGM-RSV-VYVPHI------QLETVSALSAFCDKASMGCL-IAPTLSIG  168 (300)
Q Consensus       108 DVVIDfT~p--------~~~~~~~~~al~~G~-~vV-igTTG~------~~e~~~~L~~~a~~~~i~iv-~a~N~SiG  168 (300)
                      |+||.++.+        ......++.|.++|+ ++| +++.+.      ........+++.++.++++. +-|++=.|
T Consensus        68 d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~y~~~K~~~E~~~~~~~~~~~ilrp~~~~~  145 (287)
T 2jl1_A           68 SKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAFAEESIIPLAHVHLATEYAIRTTNIPYTFLRNALYTD  145 (287)
T ss_dssp             SEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGCCSTHHHHHHHHHHHHHHTTCCEEEEEECCBHH
T ss_pred             CEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCCchHHHHHHHHHHHHHcCCCeEEEECCEecc
Confidence            999987643        234556677888886 454 333221      11233445666666676654 44555444

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.89  E-value=0.025  Score=51.79  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=25.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      ++|.|.|++|.+|+.+++.+.+....+++++.
T Consensus        47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~   78 (357)
T 2x6t_A           47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVD   78 (357)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            78999999999999999998865327777654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.87  E-value=0.0068  Score=57.39  Aligned_cols=109  Identities=7%  Similarity=0.127  Sum_probs=65.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|+|+|+ |+||+.+++.+.+ .+++++ +.|++.  ..+.+++   ..++... -+.++++.     .++|++|-+..
T Consensus       174 ktV~V~G~-G~VG~~~A~~L~~-~GakVv-v~D~~~--~~l~~~a---~~~ga~~-v~~~~ll~-----~~~DIvip~a~  239 (364)
T 1leh_A          174 LAVSVQGL-GNVAKALCKKLNT-EGAKLV-VTDVNK--AAVSAAV---AEEGADA-VAPNAIYG-----VTCDIFAPCAL  239 (364)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH---HHHCCEE-CCGGGTTT-----CCCSEEEECSC
T ss_pred             CEEEEECc-hHHHHHHHHHHHH-CCCEEE-EEcCCH--HHHHHHH---HHcCCEE-EChHHHhc-----cCCcEeeccch
Confidence            68999998 9999999998875 588988 888643  1222222   1123222 24456664     58899987665


Q ss_pred             chhH-HHHHHHHHHcCCCEEEeCCC-C-CHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          116 ASTV-YDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       116 p~~~-~~~~~~al~~G~~vVigTTG-~-~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      .... .+++.   ..+..+|++++. . +.++   ..++.++.|+  ++.|-+.
T Consensus       240 ~~~I~~~~~~---~lg~~iV~e~An~p~t~~e---a~~~L~~~Gi--~~~Pd~~  285 (364)
T 1leh_A          240 GAVLNDFTIP---QLKAKVIAGSADNQLKDPR---HGKYLHELGI--VYAPDYV  285 (364)
T ss_dssp             SCCBSTTHHH---HCCCSEECCSCSCCBSSHH---HHHHHHHHTC--EECCHHH
T ss_pred             HHHhCHHHHH---hCCCcEEEeCCCCCcccHH---HHHHHHhCCC--EEeccee
Confidence            4433 23333   348889998873 2 2223   3334455444  6666544

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.86  E-value=0.025  Score=51.49  Aligned_cols=87  Identities=22%  Similarity=0.227  Sum_probs=52.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      +++|.|.|++|.+|+.+++.+.+ .+.++++...... ...+..+     ...+.-.+++++++      .++|+||.+.
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~-~~~~~~~-----~~Dl~d~~~~~~~~------~~~d~vih~A   85 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRT-QGRTVRGFDLRPS-GTGGEEV-----VGSLEDGQALSDAI------MGVSAVLHLG   85 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHH-TTCCEEEEESSCC-SSCCSEE-----ESCTTCHHHHHHHH------TTCSEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHh-CCCEEEEEeCCCC-CCCccEE-----ecCcCCHHHHHHHH------hCCCEEEECC
Confidence            58999999999999999999886 4788887543221 1111000     01111123445566      3799999875


Q ss_pred             Cc----------------hhHHHHHHHHHHcCC-CEE
Q 022250          115 DA----------------STVYDNVKQATAFGM-RSV  134 (300)
Q Consensus       115 ~p----------------~~~~~~~~~al~~G~-~vV  134 (300)
                      .+                ..+...++.|.++++ .+|
T Consensus        86 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V  122 (347)
T 4id9_A           86 AFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFV  122 (347)
T ss_dssp             CCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             cccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            32                123456777788886 444

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.86  E-value=0.022  Score=52.58  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=27.8

Q ss_pred             EeecCCCCC---cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEE
Q 022250           26 SCSTNPPQS---NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAI   67 (300)
Q Consensus        26 ~~~~~~~~~---~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~v   67 (300)
                      .++++|...   .++|.|.|++|.+|+.+++.+.+.++. ++++..
T Consensus         9 ~~~~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~   54 (344)
T 2gn4_A            9 SMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYS   54 (344)
T ss_dssp             -------CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEE
T ss_pred             CCCCccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEE
Confidence            345666532   378999999999999999999876465 777643

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.85  E-value=0.0045  Score=56.21  Aligned_cols=98  Identities=10%  Similarity=-0.005  Sum_probs=52.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |+|||+|+|+ |.||..++..+.+. +.++. +++++..+.+.....|   .....+..+..+.+.     .++|+||-+
T Consensus         1 M~mkI~iiGa-Ga~G~~~a~~L~~~-g~~V~-~~~r~~~~~~~~~~~g---~~~~~~~~~~~~~~~-----~~~D~vila   69 (294)
T 3g17_A            1 MSLSVAIIGP-GAVGTTIAYELQQS-LPHTT-LIGRHAKTITYYTVPH---APAQDIVVKGYEDVT-----NTFDVIIIA   69 (294)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHH-CTTCE-EEESSCEEEEEESSTT---SCCEEEEEEEGGGCC-----SCEEEEEEC
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHC-CCeEE-EEEeccCcEEEEecCC---eeccceecCchHhcC-----CCCCEEEEe
Confidence            5689999998 99999999988753 34443 3444321111110001   111223333333331     478999988


Q ss_pred             CCchhHHHHHHHHHH---cCCCEEEeCCCCCH
Q 022250          114 TDASTVYDNVKQATA---FGMRSVVYVPHIQL  142 (300)
Q Consensus       114 T~p~~~~~~~~~al~---~G~~vVigTTG~~~  142 (300)
                      +.+..+.+.+.....   .+..+|+-.-|+..
T Consensus        70 vk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           70 VKTHQLDAVIPHLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             SCGGGHHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred             CCccCHHHHHHHHHHhhCCCCEEEEeccCccc
Confidence            888777666554432   23344444446543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.84  E-value=0.015  Score=51.69  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=26.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |+||.|.|+ |.+|+.+++.+.+ .+.+++++..
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~-~g~~V~~~~r   34 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTA-QGHEVTGLRR   34 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-CCCEEEEEeC
Confidence            579999995 9999999999886 4788887654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.83  E-value=0.027  Score=51.01  Aligned_cols=33  Identities=18%  Similarity=0.321  Sum_probs=27.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      ++++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   36 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLA-HGYDVVIAD   36 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHH-CCCcEEEEe
Confidence            457999999999999999999885 478877653

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.82  E-value=0.028  Score=51.18  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=27.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      .+++|.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   58 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVD   58 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHH-CCCEEEEEe
Confidence            357999999999999999999886 478888754

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.81  E-value=0.047  Score=50.66  Aligned_cols=34  Identities=24%  Similarity=0.169  Sum_probs=28.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      +|++|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   61 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKH-EGHYVIASDW   61 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             cCCeEEEECCccHHHHHHHHHHHH-CCCeEEEEEC
Confidence            467999999999999999999886 4788887543

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=95.80  E-value=0.0088  Score=55.04  Aligned_cols=102  Identities=14%  Similarity=0.001  Sum_probs=59.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|. |+||+.+++.+.. -++++++ +|+... ..           +...+.++++++.      .+|+|+-..
T Consensus       124 g~~vgIIG~-G~IG~~~A~~l~~-~G~~V~~-~dr~~~-~~-----------~~~~~~~l~ell~------~aDvV~l~~  182 (303)
T 1qp8_A          124 GEKVAVLGL-GEIGTRVGKILAA-LGAQVRG-FSRTPK-EG-----------PWRFTNSLEEALR------EARAAVCAL  182 (303)
T ss_dssp             TCEEEEESC-STHHHHHHHHHHH-TTCEEEE-ECSSCC-CS-----------SSCCBSCSHHHHT------TCSEEEECC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHH-CCCEEEE-ECCCcc-cc-----------CcccCCCHHHHHh------hCCEEEEeC
Confidence            478999997 9999999998874 5788764 675431 10           1223468889884      789999766


Q ss_pred             Cchh-HHH----HHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCe
Q 022250          115 DAST-VYD----NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (300)
Q Consensus       115 ~p~~-~~~----~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~  158 (300)
                      +... +..    .....++.|.-+|--.+|-- .+.+.|.++.++..+.
T Consensus       183 P~~~~t~~~i~~~~l~~mk~gailin~srg~~-vd~~aL~~aL~~g~i~  230 (303)
T 1qp8_A          183 PLNKHTRGLVKYQHLALMAEDAVFVNVGRAEV-LDRDGVLRILKERPQF  230 (303)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTCEEEECSCGGG-BCHHHHHHHHHHCTTC
T ss_pred             cCchHHHHHhCHHHHhhCCCCCEEEECCCCcc-cCHHHHHHHHHhCCce
Confidence            4332 221    12223344444443333421 1123566666665554

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.78  E-value=0.074  Score=49.24  Aligned_cols=114  Identities=11%  Similarity=0.131  Sum_probs=63.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e-------cCHHHHHhcccccCC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M-------SDLTMVLGSISQSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~-------~dl~~~l~~~~~~~~  106 (300)
                      +++|.|.|+||.+|+.+++.+.+ .+.++++...... ......+..   ..++.+ .       +++++++      ..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~-~~~~~~l~~---~~~v~~v~~D~l~d~~~l~~~~------~~   73 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHSLK-GLIAEELQA---IPNVTLFQGPLLNNVPLMDTLF------EG   73 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCSC-SHHHHHHHT---STTEEEEESCCTTCHHHHHHHH------TT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCCC-hhhHHHHhh---cCCcEEEECCccCCHHHHHHHH------hc
Confidence            47899999999999999999886 5788877553221 111111210   012211 1       1244555      36


Q ss_pred             ccEEEEcCCc------hhHHHHHHHHHHcC-C-CEE-EeCCC--C--------CHHHHHHHHHHhhhCCCeE
Q 022250          107 RAVVIDFTDA------STVYDNVKQATAFG-M-RSV-VYVPH--I--------QLETVSALSAFCDKASMGC  159 (300)
Q Consensus       107 ~DVVIDfT~p------~~~~~~~~~al~~G-~-~vV-igTTG--~--------~~e~~~~L~~~a~~~~i~i  159 (300)
                      +|+||..+..      ......+..|.+.| + .+| +++.+  .        ........+++.++.++++
T Consensus        74 ~d~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~sK~~~E~~~~~~gi~~  145 (352)
T 1xgk_A           74 AHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPS  145 (352)
T ss_dssp             CSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTSSSCE
T ss_pred             CCEEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHHHHHHHHHHHHcCCCE
Confidence            8999876532      12345566777788 5 455 33322  0        0122345566666656544

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.77  E-value=0.024  Score=52.58  Aligned_cols=66  Identities=11%  Similarity=0.065  Sum_probs=45.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .++|+|+|+ |+||+.+++.+.. .+++++ ++|+..  ......    ...++... ++++++.      .+|+|+...
T Consensus       155 g~~vgIIG~-G~iG~~iA~~l~~-~G~~V~-~~d~~~--~~~~~~----~~~g~~~~-~l~e~l~------~aDvVi~~v  218 (330)
T 2gcg_A          155 QSTVGIIGL-GRIGQAIARRLKP-FGVQRF-LYTGRQ--PRPEEA----AEFQAEFV-STPELAA------QSDFIVVAC  218 (330)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGG-GTCCEE-EEESSS--CCHHHH----HTTTCEEC-CHHHHHH------HCSEEEECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEE-EECCCC--cchhHH----HhcCceeC-CHHHHHh------hCCEEEEeC
Confidence            368999998 9999999998874 578865 466542  111111    13344444 8888884      789999877


Q ss_pred             Cc
Q 022250          115 DA  116 (300)
Q Consensus       115 ~p  116 (300)
                      ++
T Consensus       219 p~  220 (330)
T 2gcg_A          219 SL  220 (330)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.74  E-value=0.013  Score=55.10  Aligned_cols=66  Identities=15%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -+++++ ++|+..  .+....    ...|+...+++++++.      .+|+|+-..
T Consensus       164 gktvGIIG~-G~IG~~vA~~l~~-~G~~V~-~~dr~~--~~~~~~----~~~g~~~~~~l~ell~------~aDvV~l~~  228 (351)
T 3jtm_A          164 GKTIGTVGA-GRIGKLLLQRLKP-FGCNLL-YHDRLQ--MAPELE----KETGAKFVEDLNEMLP------KCDVIVINM  228 (351)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGG-GCCEEE-EECSSC--CCHHHH----HHHCCEECSCHHHHGG------GCSEEEECS
T ss_pred             CCEEeEEEe-CHHHHHHHHHHHH-CCCEEE-EeCCCc--cCHHHH----HhCCCeEcCCHHHHHh------cCCEEEECC
Confidence            478999998 9999999998874 588865 467543  111111    1234555679999985      789998665


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       229 P  229 (351)
T 3jtm_A          229 P  229 (351)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.73  E-value=0.039  Score=50.08  Aligned_cols=39  Identities=15%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             cCCCCC-cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           29 TNPPQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        29 ~~~~~~-~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      .+|..+ .++|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus        13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~-~g~~V~~~~r   52 (330)
T 2pzm_A           13 GLVPRGSHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDN   52 (330)
T ss_dssp             -CCSTTTCCEEEEETTTSHHHHHHHHHHGG-GTCEEEEEEC
T ss_pred             CCcccCCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            445443 47999999999999999999886 4788887543

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=95.71  E-value=0.015  Score=51.71  Aligned_cols=82  Identities=13%  Similarity=0.136  Sum_probs=51.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||.|.|++|.+|+.+++.+.  .+.++++. ++...      ..    ...+.-.++++++++    ..++|+||.+..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~--~g~~V~~~-~r~~~------~~----~~D~~d~~~~~~~~~----~~~~d~vih~a~   63 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA--PVGNLIAL-DVHSK------EF----CGDFSNPKGVAETVR----KLRPDVIVNAAA   63 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT--TTSEEEEE-CTTCS------SS----CCCTTCHHHHHHHHH----HHCCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh--cCCeEEEe-ccccc------cc----cccCCCHHHHHHHHH----hcCCCEEEECcc
Confidence            489999999999999999887  48888874 43220      00    111111234556664    124899999753


Q ss_pred             ch------------------hHHHHHHHHHHcCCCEE
Q 022250          116 AS------------------TVYDNVKQATAFGMRSV  134 (300)
Q Consensus       116 p~------------------~~~~~~~~al~~G~~vV  134 (300)
                      +.                  .....++.|.+.|+.+|
T Consensus        64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  100 (299)
T 1n2s_A           64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVV  100 (299)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEE
T ss_pred             cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence            21                  13455566767777666

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.65  E-value=0.045  Score=52.67  Aligned_cols=137  Identities=14%  Similarity=0.175  Sum_probs=82.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCcCCCC-c-----ceecCHHHHHhcccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-I-----PVMSDLTMVLGSISQ  103 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~g-v-----~v~~dl~~~l~~~~~  103 (300)
                      ..+|+|.|+ |+||+..++.+.+..+.++|++.|+.     +.|-|...+.......+ +     ..+-+.++++.    
T Consensus       209 g~~vaVqG~-GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~----  283 (415)
T 2tmg_A          209 KATVAVQGF-GNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE----  283 (415)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT----
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc----
Confidence            378999997 99999999988753699999999962     33445433221100001 0     01224567775    


Q ss_pred             cCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCc---HHHHHH-HHHH
Q 022250          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IGSILL-QQAA  176 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~S---iGv~ll-~~~a  176 (300)
                       .++|++|.++..... .+++.   +.+..+|++--  .++++..+.|    +++|+  ++.|-+.   =||..- .+..
T Consensus       284 -~~~DIliP~A~~n~i~~~~a~---~l~ak~V~EgAN~p~t~~a~~~l----~~~Gi--~~~PD~~aNaGGV~~s~~E~v  353 (415)
T 2tmg_A          284 -LDVDILVPAALEGAIHAGNAE---RIKAKAVVEGANGPTTPEADEIL----SRRGI--LVVPDILANAGGVTVSYFEWV  353 (415)
T ss_dssp             -CSCSEEEECSSTTSBCHHHHT---TCCCSEEECCSSSCBCHHHHHHH----HHTTC--EEECHHHHTCHHHHHHHHHHH
T ss_pred             -CCCcEEEecCCcCccCcccHH---HcCCeEEEeCCCcccCHHHHHHH----HHCCC--EEEChHHHhCCCceEEEEEEE
Confidence             689999999876554 33443   55888998865  4565433222    34455  5555443   255432 3455


Q ss_pred             HHhccCCCCe
Q 022250          177 ISASFHYKNV  186 (300)
Q Consensus       177 ~~~~~~~~di  186 (300)
                      +....++|+-
T Consensus       354 qN~~~~~w~~  363 (415)
T 2tmg_A          354 QDLQSFFWDL  363 (415)
T ss_dssp             HHHTTCCCCH
T ss_pred             ecCccccCCH
Confidence            5555556653

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.62  E-value=0.038  Score=50.14  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=27.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |+++|.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   33 (348)
T 1ek6_A            1 MAEKVLVTGGAGYIGSHTVLELLE-AGYLPVVID   33 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            567999999999999999999886 478887754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.61  E-value=0.016  Score=52.95  Aligned_cols=94  Identities=10%  Similarity=0.058  Sum_probs=54.1

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecC----------HHHHHhcccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD----------LTMVLGSISQ  103 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d----------l~~~l~~~~~  103 (300)
                      |+|||+|+|+ |.||..++..+.  .+.++.. ++++.  .....+.    +.|+.+..+          -++..     
T Consensus         1 M~mkI~IiGa-Ga~G~~~a~~L~--~g~~V~~-~~r~~--~~~~~l~----~~G~~~~~~~~~~~~~~~~~~~~~-----   65 (307)
T 3ego_A            1 MSLKIGIIGG-GSVGLLCAYYLS--LYHDVTV-VTRRQ--EQAAAIQ----SEGIRLYKGGEEFRADCSADTSIN-----   65 (307)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHH--TTSEEEE-ECSCH--HHHHHHH----HHCEEEEETTEEEEECCEEESSCC-----
T ss_pred             CCCEEEEECC-CHHHHHHHHHHh--cCCceEE-EECCH--HHHHHHH----hCCceEecCCCeeccccccccccc-----
Confidence            5789999998 999999999887  5677664 44431  1111111    112211100          01222     


Q ss_pred             cCCccEEEEcCCchhHHHHHHHHHHcCCC-EEEeCCCCCHH
Q 022250          104 SKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLE  143 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTTG~~~e  143 (300)
                       .++|+||-++.+....+.+......+.. +|+-.-|+..+
T Consensus        66 -~~~D~vilavK~~~~~~~l~~l~~~~~~~ivs~~nGi~~~  105 (307)
T 3ego_A           66 -SDFDLLVVTVKQHQLQSVFSSLERIGKTNILFLQNGMGHI  105 (307)
T ss_dssp             -SCCSEEEECCCGGGHHHHHHHTTSSCCCEEEECCSSSHHH
T ss_pred             -CCCCEEEEEeCHHHHHHHHHHhhcCCCCeEEEecCCccHH
Confidence             4789999888887777766554433222 55545588653

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.60  E-value=0.0093  Score=55.07  Aligned_cols=64  Identities=20%  Similarity=0.193  Sum_probs=44.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|+ |+||+.+++.+.. -+++++ ++|+...  .. ..    ...|+.. .++++++.      .+|+|+...
T Consensus       142 g~~vgIIG~-G~IG~~~A~~l~~-~G~~V~-~~d~~~~--~~-~~----~~~g~~~-~~l~ell~------~aDvVvl~~  204 (313)
T 2ekl_A          142 GKTIGIVGF-GRIGTKVGIIANA-MGMKVL-AYDILDI--RE-KA----EKINAKA-VSLEELLK------NSDVISLHV  204 (313)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHH-TTCEEE-EECSSCC--HH-HH----HHTTCEE-CCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHH-CCCEEE-EECCCcc--hh-HH----HhcCcee-cCHHHHHh------hCCEEEEec
Confidence            478999998 9999999998874 578876 4676431  11 11    1234443 48889885      689999776


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       205 P  205 (313)
T 2ekl_A          205 T  205 (313)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.56  E-value=0.044  Score=49.81  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=28.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |++|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        21 ~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r   53 (333)
T 2q1w_A           21 MKKVFITGICGQIGSHIAELLLE-RGDKVVGIDN   53 (333)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHH-CCCEEEEEEC
Confidence            57999999999999999999886 4788887643

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.49  E-value=0.028  Score=51.51  Aligned_cols=70  Identities=21%  Similarity=0.300  Sum_probs=43.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CcCC--CCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQP--LEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g-~~~~--~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .||+|+|+ |.||..++..+.  .+++++ ++|++.  ..+..... +...  .++...+|+++ +      .++|+||.
T Consensus        13 ~~V~vIG~-G~MG~~iA~~la--aG~~V~-v~d~~~--~~~~~~~~~l~~~~~~~i~~~~~~~~-~------~~aDlVie   79 (293)
T 1zej_A           13 MKVFVIGA-GLMGRGIAIAIA--SKHEVV-LQDVSE--KALEAAREQIPEELLSKIEFTTTLEK-V------KDCDIVME   79 (293)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH--TTSEEE-EECSCH--HHHHHHHHHSCGGGGGGEEEESSCTT-G------GGCSEEEE
T ss_pred             CeEEEEee-CHHHHHHHHHHH--cCCEEE-EEECCH--HHHHHHHHHHHHHHhCCeEEeCCHHH-H------cCCCEEEE
Confidence            78999998 999999999888  688866 467542  11111110 0000  14555677765 4      37899998


Q ss_pred             cCCchh
Q 022250          113 FTDAST  118 (300)
Q Consensus       113 fT~p~~  118 (300)
                      +.+.+.
T Consensus        80 avpe~~   85 (293)
T 1zej_A           80 AVFEDL   85 (293)
T ss_dssp             CCCSCH
T ss_pred             cCcCCH
Confidence            765433

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.46  E-value=0.013  Score=55.41  Aligned_cols=68  Identities=10%  Similarity=0.092  Sum_probs=46.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ..+|+|+|+ |+||+.+++.+.. -+++ +++ +|+.....+   ..   ...|+...+++++++.      .+|+|+..
T Consensus       164 g~tvgIIG~-G~IG~~vA~~l~~-~G~~~V~~-~d~~~~~~~---~~---~~~g~~~~~~l~ell~------~aDvV~l~  228 (364)
T 2j6i_A          164 GKTIATIGA-GRIGYRVLERLVP-FNPKELLY-YDYQALPKD---AE---EKVGARRVENIEELVA------QADIVTVN  228 (364)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGG-GCCSEEEE-ECSSCCCHH---HH---HHTTEEECSSHHHHHH------TCSEEEEC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHh-CCCcEEEE-ECCCccchh---HH---HhcCcEecCCHHHHHh------cCCEEEEC
Confidence            468999998 9999999998874 4775 654 675431111   11   1345555568999985      78999987


Q ss_pred             CCch
Q 022250          114 TDAS  117 (300)
Q Consensus       114 T~p~  117 (300)
                      .+..
T Consensus       229 ~P~t  232 (364)
T 2j6i_A          229 APLH  232 (364)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            7543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.44  E-value=0.017  Score=56.53  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=26.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +.||+|+|+ |.||..++..+.+ .+++++ ++|.+
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~-aG~~V~-l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAAS-HGHQVL-LYDIS   37 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEECC
Confidence            358999998 9999999998875 577765 46754

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.38  E-value=0.026  Score=52.45  Aligned_cols=105  Identities=13%  Similarity=0.076  Sum_probs=60.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .++|+|+|+ |+||+.+++.+.. -+++++ ++|+...  .  +..   ...|+. +.++++++.      .+|+|+...
T Consensus       150 g~~vgIIG~-G~iG~~iA~~l~~-~G~~V~-~~d~~~~--~--~~~---~~~g~~-~~~l~~~l~------~aDvVil~v  212 (334)
T 2dbq_A          150 GKTIGIIGL-GRIGQAIAKRAKG-FNMRIL-YYSRTRK--E--EVE---RELNAE-FKPLEDLLR------ESDFVVLAV  212 (334)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSCC--H--HHH---HHHCCE-ECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHh-CCCEEE-EECCCcc--h--hhH---hhcCcc-cCCHHHHHh------hCCEEEECC
Confidence            478999997 9999999998875 578876 4676431  1  111   122333 358888885      789999877


Q ss_pred             Cchh-HH----HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCC
Q 022250          115 DAST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (300)
Q Consensus       115 ~p~~-~~----~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i  157 (300)
                      ++.. +.    +.....++.|.-+|...+|..-+ .+.|.++.++.++
T Consensus       213 p~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~-~~aL~~aL~~~~i  259 (334)
T 2dbq_A          213 PLTRETYHLINEERLKLMKKTAILINIARGKVVD-TNALVKALKEGWI  259 (334)
T ss_dssp             CCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBC-HHHHHHHHHHTSS
T ss_pred             CCChHHHHhhCHHHHhcCCCCcEEEECCCCcccC-HHHHHHHHHhCCe
Confidence            5443 21    12223344454444434442211 1345555554444

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.37  E-value=0.028  Score=56.62  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=27.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ..||.|+|+ |..|..+++.+.. .++.=+.++|.+
T Consensus       326 ~arVLIVGa-GGLGs~vA~~La~-aGVG~ItLvD~D  359 (615)
T 4gsl_A          326 NTKVLLLGA-GTLGCYVSRALIA-WGVRKITFVDNG  359 (615)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCC
Confidence            368999999 9999999999885 576556678853

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.37  E-value=0.029  Score=54.66  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=27.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .+.||+|+|+ |.||..++..+.+ .+++++. +|.+
T Consensus        53 ~i~kVaVIGa-G~MG~~IA~~la~-aG~~V~l-~D~~   86 (460)
T 3k6j_A           53 DVNSVAIIGG-GTMGKAMAICFGL-AGIETFL-VVRN   86 (460)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSC
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHH-CCCeEEE-EECc
Confidence            3579999998 9999999998875 5888764 6654

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=95.36  E-value=0.029  Score=51.74  Aligned_cols=74  Identities=12%  Similarity=0.183  Sum_probs=50.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||.|.|++|.+|+.+++.+.+....+++. +|..   .|               .++++++++      ++|+||.+..
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~-~d~~---~d---------------~~~l~~~~~------~~d~Vih~a~   55 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFE-VHRQ---TK---------------EEELESALL------KADFIVHLAG   55 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEE-CCTT---CC---------------HHHHHHHHH------HCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEE-ECCC---CC---------------HHHHHHHhc------cCCEEEECCc
Confidence            589999999999999999998764447664 3331   01               123456664      6899998652


Q ss_pred             --------------chhHHHHHHHHHHcCCC--EE
Q 022250          116 --------------ASTVYDNVKQATAFGMR--SV  134 (300)
Q Consensus       116 --------------p~~~~~~~~~al~~G~~--vV  134 (300)
                                    .......++.|.++|+.  +|
T Consensus        56 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v   90 (369)
T 3st7_A           56 VNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAIL   90 (369)
T ss_dssp             SBCTTCSTTCSSSCCBHHHHHHHHHTTCSSCCEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence                          22345677778888854  55

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.33  E-value=0.025  Score=52.35  Aligned_cols=65  Identities=15%  Similarity=0.125  Sum_probs=45.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      ..+|+|+|+ |+||+.+++.+.. -+++++ ++|+ ...  . ...    ...|+...+++++++.      .+|+|+..
T Consensus       146 g~~vgIIG~-G~IG~~~A~~l~~-~G~~V~-~~d~~~~~--~-~~~----~~~g~~~~~~l~ell~------~aDvVil~  209 (320)
T 1gdh_A          146 NKTLGIYGF-GSIGQALAKRAQG-FDMDID-YFDTHRAS--S-SDE----ASYQATFHDSLDSLLS------VSQFFSLN  209 (320)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCEEE-EECSSCCC--H-HHH----HHHTCEECSSHHHHHH------HCSEEEEC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEE-EECCCCcC--h-hhh----hhcCcEEcCCHHHHHh------hCCEEEEe
Confidence            368999998 9999999998874 578876 4676 431  1 111    1234444558999885      78999977


Q ss_pred             CC
Q 022250          114 TD  115 (300)
Q Consensus       114 T~  115 (300)
                      .+
T Consensus       210 ~p  211 (320)
T 1gdh_A          210 AP  211 (320)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.32  E-value=0.047  Score=50.48  Aligned_cols=74  Identities=16%  Similarity=0.108  Sum_probs=42.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCcce---ecCHHHHHhcccccCCccE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DV  109 (300)
                      +++||+|+|++|.+|..++..+.+..- .+|+. +|.+..-..+.++.....+..+..   ++|+++++      .++|+
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l-~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al------~gaDv   79 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHL-YDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAAL------TGMDL   79 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEE-EESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHH------TTCSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHc------CCCCE
Confidence            358999999779999999998875432 46655 775431001112221101112222   23677777      47899


Q ss_pred             EEEcC
Q 022250          110 VIDFT  114 (300)
Q Consensus       110 VIDfT  114 (300)
                      ||...
T Consensus        80 Vi~~a   84 (326)
T 1smk_A           80 IIVPA   84 (326)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            98654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.32  E-value=0.073  Score=47.37  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=28.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ||+||.|.|++|.+|+.+++.+.+. +.++++...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   39 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVAS-GEEVTVLDD   39 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCCEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHC-CCEEEEEec
Confidence            4689999999999999999998864 778776543

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.32  E-value=0.013  Score=54.21  Aligned_cols=89  Identities=9%  Similarity=-0.014  Sum_probs=58.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC--CCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~--~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..+|+|+|+ |.||+.+++.+.+..+.+.+.++|++.  ..+..++..-..  .++. ++|+++++       ++|+||-
T Consensus       125 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~--~~a~~la~~~~~~~~~~~-~~~~~e~v-------~aDvVi~  193 (322)
T 1omo_A          125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVRE--KAAKKFVSYCEDRGISAS-VQPAEEAS-------RCDVLVT  193 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHHHTTCCEE-ECCHHHHT-------SSSEEEE
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhcCceEE-ECCHHHHh-------CCCEEEE
Confidence            368999998 999999999988766778888898753  222223210000  2344 77888775       4799998


Q ss_pred             cCCchhHHHHH-HHHHHcCCCEEEe
Q 022250          113 FTDASTVYDNV-KQATAFGMRSVVY  136 (300)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vVig  136 (300)
                      +|+...  ..+ ..+++.|++|+..
T Consensus       194 aTp~~~--pv~~~~~l~~G~~V~~i  216 (322)
T 1omo_A          194 TTPSRK--PVVKAEWVEEGTHINAI  216 (322)
T ss_dssp             CCCCSS--CCBCGGGCCTTCEEEEC
T ss_pred             eeCCCC--ceecHHHcCCCeEEEEC
Confidence            775322  222 2467789988854

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.30  E-value=0.018  Score=51.57  Aligned_cols=66  Identities=20%  Similarity=0.259  Sum_probs=44.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      ||+|+|+ |+||+.++..+.+ .+.+=+-+++++.  ..+.+++   ..++...++++++++.      ++|+||..|+
T Consensus       110 ~vliiGa-Gg~a~ai~~~L~~-~G~~~I~v~nR~~--~ka~~la---~~~~~~~~~~~~~~~~------~aDiVInatp  175 (253)
T 3u62_A          110 PVVVVGA-GGAARAVIYALLQ-MGVKDIWVVNRTI--ERAKALD---FPVKIFSLDQLDEVVK------KAKSLFNTTS  175 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHH-TTCCCEEEEESCH--HHHHTCC---SSCEEEEGGGHHHHHH------TCSEEEECSS
T ss_pred             eEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHH---HHcccCCHHHHHhhhc------CCCEEEECCC
Confidence            8999998 9999999998875 4553344667643  2333333   2334334567777774      7899998775

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.30  E-value=0.12  Score=45.67  Aligned_cols=83  Identities=14%  Similarity=0.184  Sum_probs=52.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVI  111 (300)
                      +..|.|.|++|.+|+.+++.+.+ .+.+++...+++.  .....+               .+.+.+    ...+   +..
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~-~G~~V~~~~~~~~--~~~~~~---------------~~~~~~----~~~~~~~~~~   83 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAAR-QGWRVGVNYAANR--EAADAV---------------VAAITE----SGGEAVAIPG   83 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----TTCEEEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCCh--hHHHHH---------------HHHHHh----cCCcEEEEEc
Confidence            34689999999999999999885 5788765544431  111111               111110    1222   345


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          112 DFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      |.+.++...+.+..+.+.  ++.+||-..|
T Consensus        84 Dl~~~~~v~~~~~~~~~~~g~id~li~nAg  113 (272)
T 4e3z_A           84 DVGNAADIAAMFSAVDRQFGRLDGLVNNAG  113 (272)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            788888888777776665  7889887665

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.23  E-value=0.063  Score=48.26  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=26.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |+||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~   32 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVD-EGLSVVVVD   32 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEe
Confidence            57899999999999999999886 478888754

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.21  E-value=0.072  Score=48.59  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=27.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   59 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDN   59 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeC
Confidence            579999999999999999998864 788887543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.18  E-value=0.16  Score=43.43  Aligned_cols=31  Identities=29%  Similarity=0.334  Sum_probs=26.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~v   67 (300)
                      ++|.|.|++|.+|+.+++.+.+. +.  ++++..
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~   51 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQ-GLFSKVTLIG   51 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEE
Confidence            68999999999999999998864 55  777654

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=95.18  E-value=0.065  Score=47.57  Aligned_cols=89  Identities=13%  Similarity=0.134  Sum_probs=51.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccC----CccE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSK----ARAV  109 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~----~~DV  109 (300)
                      ||.|.|++|.+|+.+++.+.+. + .+++++ ++.........+.+.  .....+.  ++++++++     .    ++|+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~-g~~~V~~~-~r~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~-----~~~~~~~d~   71 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDK-GITDILVV-DNLKDGTKFVNLVDL--NIADYMDKEDFLIQIMA-----GEEFGDVEA   71 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCCEEEE-ECCSSGGGGHHHHTS--CCSEEEEHHHHHHHHHT-----TCCCSSCCE
T ss_pred             CEEEEcCccHHHHHHHHHHHHC-CCcEEEEE-ccCCCCchhhhcCcc--eeccccccHHHHHHHHh-----ccccCCCcE
Confidence            5899999999999999998864 5 777765 433211111112111  0101111  23444553     2    5899


Q ss_pred             EEEcCCch----------------hHHHHHHHHHHcCCCEE
Q 022250          110 VIDFTDAS----------------TVYDNVKQATAFGMRSV  134 (300)
Q Consensus       110 VIDfT~p~----------------~~~~~~~~al~~G~~vV  134 (300)
                      ||.+..+.                .....++.|.++|+.+|
T Consensus        72 vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  112 (310)
T 1eq2_A           72 IFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFL  112 (310)
T ss_dssp             EEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEE
T ss_pred             EEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            99875321                13456667777787666

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=95.18  E-value=0.049  Score=49.18  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=27.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |+||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~   32 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALS-QGIDLIVFD   32 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHh-CCCEEEEEe
Confidence            46899999999999999999886 578888754

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=95.18  E-value=0.11  Score=45.10  Aligned_cols=30  Identities=20%  Similarity=0.324  Sum_probs=25.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |||.|.|++|.+|+.+++.+.+  +.++++..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~--g~~V~~~~   30 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE--RHEVIKVY   30 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT--TSCEEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHhc--CCeEEEec
Confidence            4799999999999999999883  68877644

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.15  E-value=0.017  Score=55.10  Aligned_cols=66  Identities=17%  Similarity=0.117  Sum_probs=45.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |+||+.+++.+.. -+++++ ++|+.....+..      ...|+..+.++++++.      .+|+|+...
T Consensus       191 gktvGIIGl-G~IG~~vA~~l~a-~G~~V~-~~d~~~~~~~~~------~~~G~~~~~~l~ell~------~aDvV~l~~  255 (393)
T 2nac_A          191 AMHVGTVAA-GRIGLAVLRRLAP-FDVHLH-YTDRHRLPESVE------KELNLTWHATREDMYP------VCDVVTLNC  255 (393)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGG-GTCEEE-EECSSCCCHHHH------HHHTCEECSSHHHHGG------GCSEEEECS
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHh-CCCEEE-EEcCCccchhhH------hhcCceecCCHHHHHh------cCCEEEEec
Confidence            368999998 9999999998874 578876 466542111111      1234444568999884      789999776


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       256 P  256 (393)
T 2nac_A          256 P  256 (393)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.14  E-value=0.14  Score=47.22  Aligned_cols=70  Identities=16%  Similarity=0.138  Sum_probs=43.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CcCCCCcceecCHHHHHhcccccCCc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (300)
                      ++||+|+|+ |.||..++..+... ++ + +..+|.+..   |  .+...... ......+..++|+ +.+      .++
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~-g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al------~~a   73 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQK-NLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDL------AGA   73 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGG------TTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHh------CCC
Confidence            579999998 99999999988764 54 7 777886431   0  11111100 0012234445787 555      478


Q ss_pred             cEEEEcC
Q 022250          108 AVVIDFT  114 (300)
Q Consensus       108 DVVIDfT  114 (300)
                      |+||...
T Consensus        74 D~Vi~a~   80 (322)
T 1t2d_A           74 DVVIVTA   80 (322)
T ss_dssp             SEEEECC
T ss_pred             CEEEEeC
Confidence            9998654

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=95.12  E-value=0.064  Score=48.01  Aligned_cols=70  Identities=16%  Similarity=0.217  Sum_probs=39.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d-~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |++|.|.|++|.+|+.+++.+.+. + .++.+........+ ....+.. -...+.- +++.+++      .++|+||.+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~-g-~~v~~~~~~~~~~~~~~~~~~~-~~~Dl~~-~~~~~~~------~~~d~vih~   70 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSES-N-EIVVIDNLSSGNEEFVNEAARL-VKADLAA-DDIKDYL------KGAEEVWHI   70 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTT-S-CEEEECCCSSCCGGGSCTTEEE-ECCCTTT-SCCHHHH------TTCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhC-C-CEEEEEcCCCCChhhcCCCcEE-EECcCCh-HHHHHHh------cCCCEEEEC
Confidence            468999999999999999998864 4 55555443221000 0000000 0112222 4566666      379999986


Q ss_pred             C
Q 022250          114 T  114 (300)
Q Consensus       114 T  114 (300)
                      .
T Consensus        71 a   71 (313)
T 3ehe_A           71 A   71 (313)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=95.12  E-value=0.095  Score=47.40  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=26.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC------cEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG------MEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~------~eLvg~v   67 (300)
                      +++|.|.|++|.+|+.+++.+.+...      .++++..
T Consensus        14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~   52 (342)
T 2hrz_A           14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLID   52 (342)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEE
Confidence            57999999999999999999886431      6777643

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.11  E-value=0.038  Score=50.81  Aligned_cols=65  Identities=18%  Similarity=0.154  Sum_probs=45.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|+ |+||+.+++.+.. -+++++ ++|+...  . .. +   .+.|+.. .++++++.      .+|+|+...
T Consensus       142 g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~-~~d~~~~--~-~~-~---~~~g~~~-~~l~ell~------~aDvV~l~~  204 (307)
T 1wwk_A          142 GKTIGIIGF-GRIGYQVAKIANA-LGMNIL-LYDPYPN--E-ER-A---KEVNGKF-VDLETLLK------ESDVVTIHV  204 (307)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSCC--H-HH-H---HHTTCEE-CCHHHHHH------HCSEEEECC
T ss_pred             CceEEEEcc-CHHHHHHHHHHHH-CCCEEE-EECCCCC--h-hh-H---hhcCccc-cCHHHHHh------hCCEEEEec
Confidence            368999998 9999999998875 578876 4676431  1 11 1   1234433 47889884      689999776


Q ss_pred             Cc
Q 022250          115 DA  116 (300)
Q Consensus       115 ~p  116 (300)
                      +.
T Consensus       205 p~  206 (307)
T 1wwk_A          205 PL  206 (307)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.06  E-value=0.081  Score=49.56  Aligned_cols=64  Identities=17%  Similarity=0.138  Sum_probs=45.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++.+ +|+..  .+... .     .++...++++++++      .+|+|+-..
T Consensus       173 gktvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~dr~~--~~~~~-~-----~g~~~~~~l~ell~------~sDvV~l~~  235 (345)
T 4g2n_A          173 GRRLGIFGM-GRIGRAIATRARG-FGLAIHY-HNRTR--LSHAL-E-----EGAIYHDTLDSLLG------ASDIFLIAA  235 (345)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHT-TTCEEEE-ECSSC--CCHHH-H-----TTCEECSSHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEEe-ChhHHHHHHHHHH-CCCEEEE-ECCCC--cchhh-h-----cCCeEeCCHHHHHh------hCCEEEEec
Confidence            368999997 9999999998874 5888775 77643  11111 1     14444579999995      789998666


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       236 P  236 (345)
T 4g2n_A          236 P  236 (345)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=95.05  E-value=0.15  Score=45.90  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=27.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~v   67 (300)
                      |||.|.|++|.+|+.+++.+.+.. +.++++..
T Consensus         4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~   36 (336)
T 2hun_A            4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINID   36 (336)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence            689999999999999999988753 58887754

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.03  E-value=0.055  Score=49.67  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=41.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecCC--CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHS--VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~--~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      |+||+|+|+ |.||..++..+... ++  +|+ .+|.+.  .|. +.++... ....+..+.|++ .+      .++|+|
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~~~-g~~~ev~-L~Di~~~~~g~-a~dl~~~-~~~~i~~t~d~~-~l------~~aD~V   81 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAISAK-GIADRLV-LLDLSEGTKGA-TMDLEIF-NLPNVEISKDLS-AS------AHSKVV   81 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHH-TCCSEEE-EECCC-----C-HHHHHHH-TCTTEEEESCGG-GG------TTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhc-CCCCEEE-EEcCCcchHHH-HHHHhhh-cCCCeEEeCCHH-HH------CCCCEE
Confidence            589999998 99999999888643 44  554 577543  111 1122211 112455667884 44      489999


Q ss_pred             EEcC
Q 022250          111 IDFT  114 (300)
Q Consensus       111 IDfT  114 (300)
                      |...
T Consensus        82 i~aa   85 (303)
T 2i6t_A           82 IFTV   85 (303)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9654

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=95.02  E-value=0.22  Score=44.86  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=26.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc--CC---cEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA--RG---MEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~---~eLvg~v   67 (300)
                      |||.|.|++|.+|+.+++.+.+.  ++   .++++..
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~   37 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD   37 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEE
Confidence            48999999999999999998864  26   8888754

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=95.01  E-value=0.078  Score=53.28  Aligned_cols=35  Identities=23%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ++++|.|.|++|.+|+.+++.+.+.++.++++...
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r  348 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI  348 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEES
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEc
Confidence            46899999999999999999998766788887543

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.99  E-value=0.098  Score=50.72  Aligned_cols=125  Identities=10%  Similarity=0.053  Sum_probs=68.7

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------CCc------chhhhhcC-cCCCCcceecCHHHHH
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGE------DIGMVCDM-EQPLEIPVMSDLTMVL   98 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------~g~------d~~~~~g~-~~~~gv~v~~dl~~~l   98 (300)
                      +.|.+|+|+|. |-||--++-.+.+ .+++++| +|.+.       .|+      ...+++.- -.......++|.++++
T Consensus        19 ~~m~~IaViGl-GYVGLp~A~~~A~-~G~~V~g-~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai   95 (444)
T 3vtf_A           19 SHMASLSVLGL-GYVGVVHAVGFAL-LGHRVVG-YDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAV   95 (444)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHH-HTCEEEE-ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHH
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHh-CCCcEEE-EECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHH
Confidence            44789999997 9999998887764 5888886 56321       011      01111100 0112244567888877


Q ss_pred             hcccccCCccEEEEcC-Cc------------hhHHHHHHHHHH---cCCCEEEeCC---CCCHHHHHH-HHHHhhhCCCe
Q 022250           99 GSISQSKARAVVIDFT-DA------------STVYDNVKQATA---FGMRSVVYVP---HIQLETVSA-LSAFCDKASMG  158 (300)
Q Consensus        99 ~~~~~~~~~DVVIDfT-~p------------~~~~~~~~~al~---~G~~vVigTT---G~~~e~~~~-L~~~a~~~~i~  158 (300)
                      +      .+|+++.+- +|            +.+.+.+...++   .|.=||+.+|   |.+++-... |++........
T Consensus        96 ~------~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~  169 (444)
T 3vtf_A           96 A------ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFS  169 (444)
T ss_dssp             H------TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCE
T ss_pred             h------cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCce
Confidence            4      678887653 12            122233333343   2455666666   777654333 33322223367


Q ss_pred             EEEcCCCc
Q 022250          159 CLIAPTLS  166 (300)
Q Consensus       159 iv~a~N~S  166 (300)
                      +.++|=|=
T Consensus       170 v~~~PErl  177 (444)
T 3vtf_A          170 VASNPEFL  177 (444)
T ss_dssp             EEECCCCC
T ss_pred             eecCcccc
Confidence            77887663

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.95  E-value=0.1  Score=47.94  Aligned_cols=72  Identities=18%  Similarity=0.132  Sum_probs=43.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCccee---cCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~---~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||+|+|++|.+|+.++..+....- .+| ..+|.+..-..+.++.....+..+..+   +|+++++      .++|+||
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev-~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~------~~aDvVv   73 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRL-TLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCL------KGCDVVV   73 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEE-EEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHH------TTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEE-EEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHh------CCCCEEE
Confidence            5999999889999999998875432 354 457764310111122211111123332   4788877      4899998


Q ss_pred             EcC
Q 022250          112 DFT  114 (300)
Q Consensus       112 DfT  114 (300)
                      ...
T Consensus        74 i~a   76 (314)
T 1mld_A           74 IPA   76 (314)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.91  E-value=0.15  Score=47.17  Aligned_cols=71  Identities=21%  Similarity=0.232  Sum_probs=43.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CcCCCCcceecCHHHHHhcccccCC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~~~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      |++||+|+|+ |.||..++..+... ++ + +..+|.+..   +  .+...... ......+..++|+ +.+      .+
T Consensus        13 ~~~kI~ViGa-G~vG~~iA~~la~~-g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al------~~   82 (328)
T 2hjr_A           13 MRKKISIIGA-GQIGSTIALLLGQK-DLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYL------QN   82 (328)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHT-TCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG------TT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHH------CC
Confidence            4579999998 99999999887754 55 7 677886531   1  01111000 0012234455787 555      47


Q ss_pred             ccEEEEcC
Q 022250          107 RAVVIDFT  114 (300)
Q Consensus       107 ~DVVIDfT  114 (300)
                      +|+||...
T Consensus        83 aD~VI~av   90 (328)
T 2hjr_A           83 SDVVIITA   90 (328)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEcC
Confidence            89999765

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=94.91  E-value=0.16  Score=46.19  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=27.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |||.|.|++|.+|+.+++.+.+..+.++++..
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~   32 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNID   32 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEe
Confidence            47999999999999999999876578888754

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=94.91  E-value=0.029  Score=52.70  Aligned_cols=76  Identities=26%  Similarity=0.393  Sum_probs=43.6

Q ss_pred             CCCC-CcceEEEEcCCchHHHHHHHHHHhcCCc------EEEEEEecCCC-----CcchhhhhcCcCCC--CcceecCHH
Q 022250           30 NPPQ-SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSHSV-----GEDIGMVCDMEQPL--EIPVMSDLT   95 (300)
Q Consensus        30 ~~~~-~~ikV~V~Ga~GrMG~~i~~~i~~~~~~------eLvg~vd~~~~-----g~d~~~~~g~~~~~--gv~v~~dl~   95 (300)
                      .|++ ..+||+|+||+|.+|+.++-.++..+-+      +| ..+|.+..     |.. -++..+..+.  .+.+.++..
T Consensus        18 ~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL-~L~Di~~~~~~~~Gva-~DL~~~~~~~~~~~~~~~~~~   95 (345)
T 4h7p_A           18 GPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVEL-RLLDIEPALKALAGVE-AELEDCAFPLLDKVVVTADPR   95 (345)
T ss_dssp             ----CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEE-EEECCGGGHHHHHHHH-HHHHHTTCTTEEEEEEESCHH
T ss_pred             CCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEE-EEECCCCccccchhhh-hhhhhcCccCCCcEEEcCChH
Confidence            3443 3699999999899999999888764422      44 45775321     111 1121111111  334557777


Q ss_pred             HHHhcccccCCccEEEEc
Q 022250           96 MVLGSISQSKARAVVIDF  113 (300)
Q Consensus        96 ~~l~~~~~~~~~DVVIDf  113 (300)
                      +.+      .++|+||..
T Consensus        96 ~a~------~~advVvi~  107 (345)
T 4h7p_A           96 VAF------DGVAIAIMC  107 (345)
T ss_dssp             HHT------TTCSEEEEC
T ss_pred             HHh------CCCCEEEEC
Confidence            777      478988854

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.89  E-value=0.062  Score=47.37  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=26.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |.+|.|.|++|.+|+.+++.+.+ .+.+++. +++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~-~G~~V~~-~~r   35 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAP-MAEILRL-ADL   35 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGG-GEEEEEE-EES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-cCCEEEE-Eec
Confidence            46799999999999999999875 4677665 444

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=94.87  E-value=0.042  Score=50.30  Aligned_cols=61  Identities=18%  Similarity=0.065  Sum_probs=44.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++++ +|+..  ...         ..+...++++++++      .+|+|+-..
T Consensus       122 g~tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~dr~~--~~~---------~~~~~~~~l~ell~------~aDiV~l~~  181 (290)
T 3gvx_A          122 GKALGILGY-GGIGRRVAHLAKA-FGMRVIA-YTRSS--VDQ---------NVDVISESPADLFR------QSDFVLIAI  181 (290)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-HTCEEEE-ECSSC--CCT---------TCSEECSSHHHHHH------HCSEEEECC
T ss_pred             cchheeecc-CchhHHHHHHHHh-hCcEEEE-Eeccc--ccc---------ccccccCChHHHhh------ccCeEEEEe
Confidence            478999998 9999999998875 4888775 56542  111         11234568999985      789998666


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       182 P  182 (290)
T 3gvx_A          182 P  182 (290)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.87  E-value=0.032  Score=53.08  Aligned_cols=90  Identities=19%  Similarity=0.251  Sum_probs=53.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ..+|+|+|+ |.||+.+++.+... ++ +++ +++++.  ..+.+++   ..+|..+  ++++++++.      .+|+||
T Consensus       167 g~~VlIiGa-G~iG~~~a~~l~~~-G~~~V~-v~~r~~--~ra~~la---~~~g~~~~~~~~l~~~l~------~aDvVi  232 (404)
T 1gpj_A          167 DKTVLVVGA-GEMGKTVAKSLVDR-GVRAVL-VANRTY--ERAVELA---RDLGGEAVRFDELVDHLA------RSDVVV  232 (404)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHHH-CCSEEE-EECSSH--HHHHHHH---HHHTCEECCGGGHHHHHH------TCSEEE
T ss_pred             CCEEEEECh-HHHHHHHHHHHHHC-CCCEEE-EEeCCH--HHHHHHH---HHcCCceecHHhHHHHhc------CCCEEE
Confidence            368999998 99999999988754 66 554 466542  1221222   1122222  357777774      789999


Q ss_pred             EcCCchhH---HHHHHH-HHH---cCCCEEEeCC
Q 022250          112 DFTDASTV---YDNVKQ-ATA---FGMRSVVYVP  138 (300)
Q Consensus       112 DfT~p~~~---~~~~~~-al~---~G~~vVigTT  138 (300)
                      ++|.....   .+.+.. +++   .+.-++++..
T Consensus       233 ~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          233 SATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             ECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             EccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            99853322   244444 343   2455666653

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.84  E-value=0.044  Score=50.28  Aligned_cols=72  Identities=10%  Similarity=-0.015  Sum_probs=43.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcc--hhhhhcC----cCCCCcceecCHHHHHhcccccCCc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED--IGMVCDM----EQPLEIPVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d--~~~~~g~----~~~~gv~v~~dl~~~l~~~~~~~~~  107 (300)
                      ||+||+|+|+ |.||..++..+....-++ +..+|.+..-.+  +.++...    .....+..++|+ +.+      .++
T Consensus         1 M~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~------~~a   71 (309)
T 1ur5_A            1 MRKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADT------ANS   71 (309)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGG------TTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHH------CCC
Confidence            5689999998 999999999887654447 777886431000  1111100    011223344777 455      479


Q ss_pred             cEEEEcC
Q 022250          108 AVVIDFT  114 (300)
Q Consensus       108 DVVIDfT  114 (300)
                      |+||...
T Consensus        72 D~Vi~a~   78 (309)
T 1ur5_A           72 DVIVVTS   78 (309)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9999764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.83  E-value=0.044  Score=50.45  Aligned_cols=93  Identities=16%  Similarity=0.184  Sum_probs=54.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCc-------CCCCcceecCHHHHHhcccccC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-------QPLEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~-------~~~gv~v~~dl~~~l~~~~~~~  105 (300)
                      +|||+|+|+ |.||..++..+.+. +.++. +++++.   ....+.  |..       ....+..+++++++       .
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~~-g~~V~-~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~   69 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLALA-GEAIN-VLARGA---TLQALQTAGLRLTEDGATHTLPVRATHDAAAL-------G   69 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHHT-TCCEE-EECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCHHHH-------C
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHC-CCEEE-EEEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-------C
Confidence            479999998 99999999988753 55554 344421   111110  100       01123445677764       3


Q ss_pred             CccEEEEcCCchhHHHHHHHHH---HcCCCEEEeCCCC
Q 022250          106 ARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHI  140 (300)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTTG~  140 (300)
                      ++|+||-++.+..+.+.+....   ..+..+|.-+.|+
T Consensus        70 ~~D~Vilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           70 EQDVVIVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CCSEEEECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CCCEEEEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            7899997777766555554332   2355566555674

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.83  E-value=0.076  Score=51.80  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=28.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ||||.|.|++|.+|+.+++.+.+ .+.+++++...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~-~G~~V~~l~R~  180 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQT-GGHEVIQLVRK  180 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECC
Confidence            58999999999999999999886 47888876543

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=94.78  E-value=0.086  Score=48.51  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=27.9

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ||++|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        23 M~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   56 (375)
T 1t2a_A           23 MRNVALITGITGQDGSYLAEFLLE-KGYEVHGIVR   56 (375)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             cCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEEC
Confidence            347899999999999999999886 4788887553

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.74  E-value=0.049  Score=49.66  Aligned_cols=73  Identities=18%  Similarity=0.105  Sum_probs=41.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCC-Ccchh-hhh-cCc-CCCCcce-ecCHHHHHhcccccCCcc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV-GEDIG-MVC-DME-QPLEIPV-MSDLTMVLGSISQSKARA  108 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~-g~d~~-~~~-g~~-~~~gv~v-~~dl~~~l~~~~~~~~~D  108 (300)
                      |+||+|+|+ |.||..++..+....- .+++ ++|.+.. .+... ++. +.. ....+.+ .+|+ +.+      .++|
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~-l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~------~~aD   71 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AAL------ADAD   71 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGG------TTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHh------CCCC
Confidence            479999997 9999999998876531 4554 5665420 00000 100 000 0112344 4676 455      4789


Q ss_pred             EEEEcCCc
Q 022250          109 VVIDFTDA  116 (300)
Q Consensus       109 VVIDfT~p  116 (300)
                      +||....+
T Consensus        72 vViiav~~   79 (309)
T 1hyh_A           72 VVISTLGN   79 (309)
T ss_dssp             EEEECCSC
T ss_pred             EEEEecCC
Confidence            99977654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=94.70  E-value=0.026  Score=52.42  Aligned_cols=64  Identities=16%  Similarity=0.299  Sum_probs=43.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++++ +|+..  .....+      .....+.+++++++      .+|+|+-..
T Consensus       137 gktvGIiGl-G~IG~~vA~~l~~-~G~~V~~-~dr~~--~~~~~~------~~~~~~~~l~ell~------~aDvV~l~l  199 (324)
T 3evt_A          137 GQQLLIYGT-GQIGQSLAAKASA-LGMHVIG-VNTTG--HPADHF------HETVAFTATADALA------TANFIVNAL  199 (324)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-EESSC--CCCTTC------SEEEEGGGCHHHHH------HCSEEEECC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHh-CCCEEEE-ECCCc--chhHhH------hhccccCCHHHHHh------hCCEEEEcC
Confidence            468999998 9999999998874 5899876 66542  111111      01122467889985      789999665


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       200 P  200 (324)
T 3evt_A          200 P  200 (324)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.70  E-value=0.11  Score=47.41  Aligned_cols=71  Identities=15%  Similarity=0.095  Sum_probs=43.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCCCcch--hhhhc----CcCCCCcceecCHHHHHhcccccCC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDI--GMVCD----MEQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~--~~~~g----~~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      +++||+|+|+ |.||..++..+... ++ + +..+|.+..-.+.  .++..    ......+..++|+ +.+      .+
T Consensus         3 ~~~kI~VIGa-G~~G~~ia~~la~~-g~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~------~~   72 (317)
T 2ewd_A            3 ERRKIAVIGS-GQIGGNIAYIVGKD-NLAD-VVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADI------SG   72 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHH-TCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG------TT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCce-EEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHh------CC
Confidence            3579999998 99999999988754 55 7 6677764310010  00000    0011234445777 455      47


Q ss_pred             ccEEEEcC
Q 022250          107 RAVVIDFT  114 (300)
Q Consensus       107 ~DVVIDfT  114 (300)
                      +|+||...
T Consensus        73 aDiVi~av   80 (317)
T 2ewd_A           73 SDVVIITA   80 (317)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEeC
Confidence            89999765

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.67  E-value=0.033  Score=49.71  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=28.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |||.|.|+||-+|+.+++.+.+ .++++++...
T Consensus         1 MkILVTGatGfIG~~L~~~L~~-~G~~V~~l~R   32 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNA-RGHEVTLVSR   32 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC
Confidence            7899999999999999999875 5899888653

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.65  E-value=0.04  Score=55.35  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=26.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||.|+|+ |..|..+++.+.. .++.=+.++|.
T Consensus       327 ~~kVLIVGa-GGLGs~va~~La~-aGVG~ItLvD~  359 (598)
T 3vh1_A          327 NTKVLLLGA-GTLGCYVSRALIA-WGVRKITFVDN  359 (598)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCCEEEEECC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEECC
Confidence            368999998 9999999999874 57765667874

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.64  E-value=0.094  Score=48.98  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=26.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||.|+|+ |..|..+++.+.. .++.=+-++|.
T Consensus        36 ~~~VlivG~-GGlG~~ia~~La~-~Gvg~itlvD~   68 (346)
T 1y8q_A           36 ASRVLLVGL-KGLGAEIAKNLIL-AGVKGLTMLDH   68 (346)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEEC
Confidence            368999998 9999999999874 46644556764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.62  E-value=0.071  Score=49.96  Aligned_cols=33  Identities=30%  Similarity=0.427  Sum_probs=26.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .-||.|+|+ |..|..+++.+.. .++.=+.++|.
T Consensus       118 ~~~VlvvG~-GglGs~va~~La~-aGvg~i~lvD~  150 (353)
T 3h5n_A          118 NAKVVILGC-GGIGNHVSVILAT-SGIGEIILIDN  150 (353)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-HTCSEEEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHh-CCCCeEEEECC
Confidence            368999998 9999999999875 46544556774

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=94.59  E-value=0.1  Score=48.38  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=61.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|+ |+||+.+++.+.. -+++++ ++|+... ..+       ... + .+.++++++.      .+|+|+...
T Consensus       145 g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~-~~d~~~~-~~~-------~~~-~-~~~~l~ell~------~aDvV~~~~  205 (333)
T 1dxy_A          145 QQTVGVMGT-GHIGQVAIKLFKG-FGAKVI-AYDPYPM-KGD-------HPD-F-DYVSLEDLFK------QSDVIDLHV  205 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSCC-SSC-------CTT-C-EECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEE-EECCCcc-hhh-------Hhc-c-ccCCHHHHHh------cCCEEEEcC
Confidence            368999998 9999999998874 588876 4775431 111       111 2 2458999985      789999766


Q ss_pred             Cchh-HH----HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCe
Q 022250          115 DAST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (300)
Q Consensus       115 ~p~~-~~----~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~  158 (300)
                      +... +.    +.....++.|.-+|--.+|--. ..+.|.++.++.++.
T Consensus       206 P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~aL~~aL~~g~i~  253 (333)
T 1dxy_A          206 PGIEQNTHIINEAAFNLMKPGAIVINTARPNLI-DTQAMLSNLKSGKLA  253 (333)
T ss_dssp             CCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSB-CHHHHHHHHHTTSEE
T ss_pred             CCchhHHHHhCHHHHhhCCCCcEEEECCCCccc-CHHHHHHHHHhCCcc
Confidence            4322 11    2223344455444443444221 224567776665543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=94.53  E-value=0.094  Score=50.14  Aligned_cols=62  Identities=23%  Similarity=0.080  Sum_probs=44.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++++ +|+... ..         ..++....++++++.      .+|+|+-..
T Consensus       145 gktlGiIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~-~~---------~~~~~~~~~l~ell~------~aDvV~l~~  205 (404)
T 1sc6_A          145 GKKLGIIGY-GHIGTQLGILAES-LGMYVYF-YDIENK-LP---------LGNATQVQHLSDLLN------MSDVVSLHV  205 (404)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSCC-CC---------CTTCEECSCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHH-CCCEEEE-EcCCch-hc---------cCCceecCCHHHHHh------cCCEEEEcc
Confidence            368999998 9999999998874 5898764 776421 00         112344568999985      689998765


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       206 P  206 (404)
T 1sc6_A          206 P  206 (404)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.52  E-value=0.11  Score=47.71  Aligned_cols=122  Identities=11%  Similarity=0.154  Sum_probs=60.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~~~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||.|+|+ |..|..+++.+... ++-=+.++|.+..- .+... +... ...|-+-.....+.+.+    -++|+-|+
T Consensus        36 ~~~VlVvGa-GGlGs~va~~La~a-GVG~i~lvD~D~Ve~sNL~Rq~~~~-~diG~~Ka~aa~~~L~~----iNP~v~v~  108 (292)
T 3h8v_A           36 TFAVAIVGV-GGVGSVTAEMLTRC-GIGKLLLFDYDKVELANMNRLFFQP-HQAGLSKVQAAEHTLRN----INPDVLFE  108 (292)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHHH-TCSEEEEECCCBC-------------CCTTSBHHHHHHHHHHH----HCTTSEEE
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHc-CCCEEEEECCCccChhhcccccCCh-hhcCchHHHHHHHHHHh----hCCCcEEE
Confidence            468999998 99999999998754 55445567753210 01110 1100 11121111222222221    35565554


Q ss_pred             cCCchhH-HHHHHHHHH----------cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          113 FTDASTV-YDNVKQATA----------FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       113 fT~p~~~-~~~~~~al~----------~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      .-..... .+++...++          .+.++|+..|.- .+....|.++|.+.++|++++..
T Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn-~~~R~~in~~c~~~~~Pli~~gv  170 (292)
T 3h8v_A          109 VHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDN-FEARMTINTACNELGQTWMESGV  170 (292)
T ss_dssp             EECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             EecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcc-hhhhhHHHHHHHHhCCCEEEeee
Confidence            3221111 122332221          467788766632 23345677777777788776544

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=94.46  E-value=0.068  Score=51.74  Aligned_cols=136  Identities=15%  Similarity=0.090  Sum_probs=80.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCcCCCC-c-----ceecCHHHHHhcccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-I-----PVMSDLTMVLGSISQ  103 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~g-v-----~v~~dl~~~l~~~~~  103 (300)
                      ..||+|.|. |++|+..++.+.+ .+..+|++.|+.     +.|-|...+.......+ +     ..+-+.++++.    
T Consensus       235 g~~vaVqGf-GnVG~~~a~~L~e-~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~----  308 (440)
T 3aog_A          235 GARVAIQGF-GNVGNAAARAFHD-HGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWG----  308 (440)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTT----
T ss_pred             CCEEEEecc-CHHHHHHHHHHHH-CCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhc----
Confidence            378999997 9999999998875 589999999962     33444443321100111 0     11224567765    


Q ss_pred             cCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCc---HHHHHH-HHHH
Q 022250          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IGSILL-QQAA  176 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~S---iGv~ll-~~~a  176 (300)
                       .++||+|.++.+... .+++.   +.+..+|++--  .++++..+.|    +++|+  ++.|-+.   =||..- .+..
T Consensus       309 -~~~DIlvPcA~~n~i~~~na~---~l~ak~VvEgAN~p~t~eA~~iL----~~~GI--~~~PD~~aNaGGV~vS~~E~~  378 (440)
T 3aog_A          309 -LPVEFLVPAALEKQITEQNAW---RIRARIVAEGANGPTTPAADDIL----LEKGV--LVVPDVIANAGGVTVSYFEWV  378 (440)
T ss_dssp             -CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHHH----HHHTC--EEECHHHHTTHHHHHHHHHHH
T ss_pred             -CCCcEEEecCCcCccchhhHH---HcCCcEEEecCccccCHHHHHHH----HHCCC--EEEChHHHhCCCceEEEEEEE
Confidence             689999999865443 33333   34888998865  3565433333    34444  5555443   254432 3455


Q ss_pred             HHhccCCCCe
Q 022250          177 ISASFHYKNV  186 (300)
Q Consensus       177 ~~~~~~~~di  186 (300)
                      +.+..++|+-
T Consensus       379 qN~~~~~w~~  388 (440)
T 3aog_A          379 QDFNSYFWTE  388 (440)
T ss_dssp             HHTTTCCCCH
T ss_pred             ecCccCcCCH
Confidence            5555556654

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=94.43  E-value=0.15  Score=49.79  Aligned_cols=137  Identities=12%  Similarity=0.142  Sum_probs=84.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCc---chhhhhcCcCC-------C-----CcceecCHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGE---DIGMVCDMEQP-------L-----EIPVMSDLT   95 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~---d~~~~~g~~~~-------~-----gv~v~~dl~   95 (300)
                      .+|+|.|. |++|+..++.+.+ .+.++|++.|+     ++.|-   |+..+......       +     +....+ .+
T Consensus       253 ~~vaVqG~-GnVG~~~a~~L~~-~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~-~~  329 (470)
T 2bma_A          253 QTAVVSGS-GNVALYCVQKLLH-LNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFP-NE  329 (470)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHH-TTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECS-SC
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-CCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEec-Cc
Confidence            78999997 9999999998875 59999999994     34454   33222110000       0     222221 13


Q ss_pred             HHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcH---HH
Q 022250           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI---GS  169 (300)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv  169 (300)
                      +++.     .++||.+-+..+... .+++...++++..+|++--  .++++..    +.-+++|  +++.|-+..   ||
T Consensus       330 ~~~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~----~~L~~rG--Il~~PD~~aNAGGV  398 (470)
T 2bma_A          330 KPWG-----VPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAI----NLFKSNN--IIYCPSKAANAGGV  398 (470)
T ss_dssp             CTTS-----SCCSEEEECSSTTCBCSHHHHHHHHTTCCEEECCSSSCBCHHHH----HHHHHTT--CEEECHHHHTTHHH
T ss_pred             Ceee-----cCccEEEeccccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHHH----HHHHHCC--cEEEChHHhhCCCc
Confidence            4453     689999998866554 7788888889999999865  3566542    2234444  466665442   44


Q ss_pred             HHH-HHHHHHhccCCCCe
Q 022250          170 ILL-QQAAISASFHYKNV  186 (300)
Q Consensus       170 ~ll-~~~a~~~~~~~~di  186 (300)
                      ..- .+..+.+..+.|+.
T Consensus       399 ~~S~~E~~qn~~~~~w~~  416 (470)
T 2bma_A          399 AISGLEMSQNFQFSHWTR  416 (470)
T ss_dssp             HHHHHHHHHHHTTCCCCH
T ss_pred             eeeHHHhhccccccCCCH
Confidence            432 34455555555653

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=94.42  E-value=0.057  Score=50.18  Aligned_cols=63  Identities=14%  Similarity=0.091  Sum_probs=43.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|+ |+||+.+++.+.. -++++. ++|+... ..+.       .. +...+++++++.      .+|+|+...
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~-~~d~~~~-~~~~-------~~-~~~~~~l~ell~------~aDvV~l~~  207 (333)
T 1j4a_A          146 DQVVGVVGT-GHIGQVFMQIMEG-FGAKVI-TYDIFRN-PELE-------KK-GYYVDSLDDLYK------QADVISLHV  207 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSCC-HHHH-------HT-TCBCSCHHHHHH------HCSEEEECS
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHH-CCCEEE-EECCCcc-hhHH-------hh-CeecCCHHHHHh------hCCEEEEcC
Confidence            368999998 9999999998874 578876 4675431 1111       11 223348899885      689999776


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       208 p  208 (333)
T 1j4a_A          208 P  208 (333)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=94.42  E-value=0.18  Score=48.15  Aligned_cols=124  Identities=12%  Similarity=0.052  Sum_probs=61.1

Q ss_pred             eEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-eecCHHHHHhcccc
Q 022250           25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQ  103 (300)
Q Consensus        25 ~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~~dl~~~l~~~~~  103 (300)
                      +--...|..|++||+|+|. |.-...+++.+.+..+++.+.+.+.+. +.  ..+.   ...-++ -+.|.+++++- .+
T Consensus        14 ~~~~~~~~~m~~~IlIlG~-g~r~~al~~~~a~~~g~~~v~~~~~~~-~~--~~~~---~~~~~~~~~~d~~~l~~~-~~   85 (452)
T 2qk4_A           14 GTENLYFQSMAARVLIIGS-GGREHTLAWKLAQSHHVKQVLVAPGNA-GT--ACSE---KISNTAISISDHTALAQF-CK   85 (452)
T ss_dssp             --------CCSEEEEEEEC-SHHHHHHHHHHTTCTTEEEEEEEECCG-GG--SBSS---SEEECCCCSSCHHHHHHH-HH
T ss_pred             ccccccccccCcEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCh-hh--hhhc---cccccccCCCCHHHHHHH-HH
Confidence            3334445456789999997 632234556666667887654433221 11  0111   000111 14566666531 22


Q ss_pred             cCCccEEEEcCCchhH--HHHHHHHHHcCCCEEEeCC--CCCH-HHHHHHHHHhhhCCCeE
Q 022250          104 SKARAVVIDFTDASTV--YDNVKQATAFGMRSVVYVP--HIQL-ETVSALSAFCDKASMGC  159 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~--~~~~~~al~~G~~vVigTT--G~~~-e~~~~L~~~a~~~~i~i  159 (300)
                      ..++|+|+-.  ++..  ...+..+.+.|++++ |.+  .... ......++++++.|+|+
T Consensus        86 ~~~~d~V~~~--~E~~~~~~~~~~l~~~gi~~~-g~~~~~~~~~~dK~~~k~~l~~~gip~  143 (452)
T 2qk4_A           86 EKKIEFVVVG--PEAPLAAGIVGNLRSAGVQCF-GPTAEAAQLESSKRFAKEFMDRHGIPT  143 (452)
T ss_dssp             HHTCCEEEEC--SSHHHHTTHHHHHHHTTCCEE-SCCTTTTHHHHBHHHHHHHHHHTTCCB
T ss_pred             HcCCCEEEEC--CcHHHHHHHHHHHHhcCCcEe-CcCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence            3468988743  2332  245555667899977 333  2221 23445667788888774

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.41  E-value=0.059  Score=50.05  Aligned_cols=72  Identities=21%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             CCCC-cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCC---Cc--chhh---hhcCcCCCCcceecCHHHHHhc
Q 022250           31 PPQS-NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---GE--DIGM---VCDMEQPLEIPVMSDLTMVLGS  100 (300)
Q Consensus        31 ~~~~-~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g~--d~~~---~~g~~~~~gv~v~~dl~~~l~~  100 (300)
                      |..| ++||+|+|+ |.||..++..+... ++ +|+ .+|.+..   |.  |...   +.+  .+..+..++|+ +.+  
T Consensus         2 ~~~m~~~kI~viGa-G~vG~~~a~~l~~~-~~~~v~-L~Di~~~~~~g~~~dl~~~~~~~~--~~~~v~~t~d~-~a~--   73 (324)
T 3gvi_A            2 PGSMARNKIALIGS-GMIGGTLAHLAGLK-ELGDVV-LFDIAEGTPQGKGLDIAESSPVDG--FDAKFTGANDY-AAI--   73 (324)
T ss_dssp             ----CCCEEEEECC-SHHHHHHHHHHHHT-TCCEEE-EECSSSSHHHHHHHHHHHHHHHHT--CCCCEEEESSG-GGG--
T ss_pred             CCCCcCCEEEEECC-CHHHHHHHHHHHhC-CCCeEE-EEeCCchhHHHHHHHHhchhhhcC--CCCEEEEeCCH-HHH--
Confidence            4444 579999998 99999999887754 45 644 6775431   11  1111   111  12234445677 455  


Q ss_pred             ccccCCccEEEEcC
Q 022250          101 ISQSKARAVVIDFT  114 (300)
Q Consensus       101 ~~~~~~~DVVIDfT  114 (300)
                          .++|+||...
T Consensus        74 ----~~aDiVIiaa   83 (324)
T 3gvi_A           74 ----EGADVVIVTA   83 (324)
T ss_dssp             ----TTCSEEEECC
T ss_pred             ----CCCCEEEEcc
Confidence                4799998654

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=94.34  E-value=0.18  Score=46.50  Aligned_cols=32  Identities=22%  Similarity=0.253  Sum_probs=26.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |+|.|.|++|.+|+.+++.+.+..+.+++++.
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~   34 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEe
Confidence            58999999999999999998823578888754

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=94.34  E-value=0.069  Score=49.77  Aligned_cols=65  Identities=17%  Similarity=0.182  Sum_probs=45.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++++ +|+... .+  . +   ...|+. +.++++++.      .+|+|+...
T Consensus       165 g~tvgIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~-~~--~-~---~~~g~~-~~~l~ell~------~aDvV~l~~  227 (335)
T 2g76_A          165 GKTLGILGL-GRIGREVATRMQS-FGMKTIG-YDPIIS-PE--V-S---ASFGVQ-QLPLEEIWP------LCDFITVHT  227 (335)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCEEEE-ECSSSC-HH--H-H---HHTTCE-ECCHHHHGG------GCSEEEECC
T ss_pred             cCEEEEEeE-CHHHHHHHHHHHH-CCCEEEE-ECCCcc-hh--h-h---hhcCce-eCCHHHHHh------cCCEEEEec
Confidence            368999997 9999999998874 5788764 675431 11  1 1   123443 358999884      789999776


Q ss_pred             Cc
Q 022250          115 DA  116 (300)
Q Consensus       115 ~p  116 (300)
                      +.
T Consensus       228 P~  229 (335)
T 2g76_A          228 PL  229 (335)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.29  E-value=0.064  Score=49.50  Aligned_cols=70  Identities=21%  Similarity=0.239  Sum_probs=41.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCC--CCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~--~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~D  108 (300)
                      |||+|+||+|.+|+.++..+... +-..=+..+|.+.  .|+ +-++...  ++.+.+.    ++..+.+      .++|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~-a~Dl~~~--~~~~~v~~~~~~~~~~~~------~~aD   71 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGV-AVDLSHI--PTAVKIKGFSGEDATPAL------EGAD   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHH-HHHHHTS--CSSEEEEEECSSCCHHHH------TTCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhH-HHHhhCC--CCCceEEEecCCCcHHHh------CCCC
Confidence            69999997799999999988765 3333344677643  111 1223322  2333443    2344455      4899


Q ss_pred             EEEEcC
Q 022250          109 VVIDFT  114 (300)
Q Consensus       109 VVIDfT  114 (300)
                      +||...
T Consensus        72 ivii~a   77 (312)
T 3hhp_A           72 VVLISA   77 (312)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            998543

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=94.25  E-value=0.1  Score=48.49  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=43.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++++ +|+..  +....+      .+...+.+++++++      .+|+|+-..
T Consensus       140 g~tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~dr~~--~~~~~~------~~~~~~~~l~ell~------~aDvV~l~l  202 (324)
T 3hg7_A          140 GRTLLILGT-GSIGQHIAHTGKH-FGMKVLG-VSRSG--RERAGF------DQVYQLPALNKMLA------QADVIVSVL  202 (324)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSC--CCCTTC------SEEECGGGHHHHHH------TCSEEEECC
T ss_pred             cceEEEEEE-CHHHHHHHHHHHh-CCCEEEE-EcCCh--HHhhhh------hcccccCCHHHHHh------hCCEEEEeC
Confidence            478999998 9999999998875 5888775 66542  111111      11122468999985      789998665


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       203 P  203 (324)
T 3hg7_A          203 P  203 (324)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.24  E-value=0.13  Score=41.37  Aligned_cols=120  Identities=13%  Similarity=0.169  Sum_probs=62.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCcCCCCccee----cCHHHHHhcccccCCcc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARA  108 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~D  108 (300)
                      ..+|.|+|+ |++|+.+++.+.+ .+.+++. +|++..  -+.+.+..    +.++.+.    .+.+.+.+.  .-.++|
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~-~g~~V~v-id~~~~~~~~~~~~~~----~~~~~~i~gd~~~~~~l~~a--~i~~ad   73 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQ-RGQNVTV-ISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKA--GIDRCR   73 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHH-TTCCEEE-EECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHH--TTTTCS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-CCCCEEE-EECCChHHHHHHHHhh----cCCCeEEEcCCCCHHHHHHc--ChhhCC
Confidence            357999998 9999999998875 4677665 454310  00111111    1233322    222222110  014789


Q ss_pred             EEEEcCCchhH-HHHHHHHHHc-C-CCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          109 VVIDFTDASTV-YDNVKQATAF-G-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       109 VVIDfT~p~~~-~~~~~~al~~-G-~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      +||-.+..+.. ......+.+. + .++|+-....  +..+.|    ++.|+..++.|....+-
T Consensus        74 ~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~--~~~~~l----~~~G~~~vi~p~~~~~~  131 (153)
T 1id1_A           74 AILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDS--KNLNKI----KMVHPDIILSPQLFGSE  131 (153)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSG--GGHHHH----HTTCCSEEECHHHHHHH
T ss_pred             EEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHH----HHcCCCEEEcHHHHHHH
Confidence            99877765544 3333444444 4 3555433332  333333    44567677777655553

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=94.23  E-value=0.14  Score=45.52  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=26.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   31 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVD   31 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHh-CCCEEEEEe
Confidence            5899999999999999999885 478887653

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=94.21  E-value=0.054  Score=53.50  Aligned_cols=66  Identities=17%  Similarity=0.162  Sum_probs=46.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .++|+|+|+ |+||+.+++.+.. -++++++ +|+... .+  . +   ...|+... ++++++.      .+|+|+-.+
T Consensus       142 g~~vgIIG~-G~IG~~vA~~l~~-~G~~V~~-~d~~~~-~~--~-a---~~~g~~~~-~l~e~~~------~aDvV~l~~  204 (529)
T 1ygy_A          142 GKTVGVVGL-GRIGQLVAQRIAA-FGAYVVA-YDPYVS-PA--R-A---AQLGIELL-SLDDLLA------RADFISVHL  204 (529)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCEEEE-ECTTSC-HH--H-H---HHHTCEEC-CHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHh-CCCEEEE-ECCCCC-hh--H-H---HhcCcEEc-CHHHHHh------cCCEEEECC
Confidence            478999997 9999999998875 5788765 676431 11  1 1   12344433 7888885      789999887


Q ss_pred             Cch
Q 022250          115 DAS  117 (300)
Q Consensus       115 ~p~  117 (300)
                      ++.
T Consensus       205 P~~  207 (529)
T 1ygy_A          205 PKT  207 (529)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            665

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=94.17  E-value=0.087  Score=49.75  Aligned_cols=64  Identities=14%  Similarity=0.157  Sum_probs=44.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+. .-++++++ +|+..  .. ...    ...|+. +.+++++++      .+|+|+-..
T Consensus       176 gktvGIIGl-G~IG~~vA~~l~-~fG~~V~~-~d~~~--~~-~~~----~~~g~~-~~~l~ell~------~aDvV~l~~  238 (365)
T 4hy3_A          176 GSEIGIVGF-GDLGKALRRVLS-GFRARIRV-FDPWL--PR-SML----EENGVE-PASLEDVLT------KSDFIFVVA  238 (365)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHT-TSCCEEEE-ECSSS--CH-HHH----HHTTCE-ECCHHHHHH------SCSEEEECS
T ss_pred             CCEEEEecC-CcccHHHHHhhh-hCCCEEEE-ECCCC--CH-HHH----hhcCee-eCCHHHHHh------cCCEEEEcC
Confidence            368999997 999999999876 45888774 67542  11 111    123333 468999995      789999765


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       239 P  239 (365)
T 4hy3_A          239 A  239 (365)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.16  E-value=0.37  Score=41.79  Aligned_cols=88  Identities=15%  Similarity=0.117  Sum_probs=52.2

Q ss_pred             ecCCCCC-cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC
Q 022250           28 STNPPQS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        28 ~~~~~~~-~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      ..+++++ ..+|.|.|++|.+|+.+++.+.+ .+.+++.+ +++.  ....++.               +.+.     ..
T Consensus         4 ~~~~~~~~~k~vlVTGasggiG~~~a~~l~~-~G~~V~~~-~r~~--~~~~~~~---------------~~~~-----~~   59 (265)
T 2o23_A            4 AAACRSVKGLVAVITGGASGLGLATAERLVG-QGASAVLL-DLPN--SGGEAQA---------------KKLG-----NN   59 (265)
T ss_dssp             ----CCCTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEE-ECTT--SSHHHHH---------------HHHC-----TT
T ss_pred             cccccCCCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEE-eCCc--HhHHHHH---------------HHhC-----Cc
Confidence            3344433 35799999999999999999885 47887754 4432  1111110               1111     12


Q ss_pred             cc-EEEEcCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          107 RA-VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       107 ~D-VVIDfT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      +. +..|.+.++...+.+..+.+.  ++++|+-..|
T Consensus        60 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag   95 (265)
T 2o23_A           60 CVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAG   95 (265)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             eEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECCc
Confidence            22 345788888777766655543  6888887665

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.15  E-value=0.3  Score=44.12  Aligned_cols=119  Identities=18%  Similarity=0.152  Sum_probs=64.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..|+.|+|+ |.||+.++..+.+. +.++. +++++.  ..+.+++    +.++... +++++       .++|+||..|
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~-G~~v~-V~nRt~--~ka~~la----~~~~~~~-~~~~l-------~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQ-GLQVS-VLNRSS--RGLDFFQ----RLGCDCF-MEPPK-------SAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSSC--TTHHHHH----HHTCEEE-SSCCS-------SCCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HCCCeEe-cHHHh-------ccCCEEEEcc
Confidence            368999998 99999999998865 46654 566653  2333332    1122221 22222       2689999887


Q ss_pred             Cch-----hH-HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          115 DAS-----TV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       115 ~p~-----~~-~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      +..     .. .+.+...+..+. +|+-.. +++ + -.+.+.|++.|++++-    .+++ |+.|++.++
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~~-~v~D~v-Y~P-~-T~ll~~A~~~G~~~~~----Gl~M-Lv~Qa~~~f  242 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEGK-LAYDLA-YGF-L-TPFLSLAKELKTPFQD----GKDM-LIYQAALSF  242 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHCS-EEEESC-CSS-C-CHHHHHHHHTTCCEEC----SHHH-HHHHHHHHH
T ss_pred             cCCCCCCCCCChHHHHhhCCCCC-EEEEeC-CCC-c-hHHHHHHHHCcCEEEC----CHHH-HHHHHHHHH
Confidence            532     12 222232455544 443322 122 2 2366777888877553    4453 345555443

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=94.14  E-value=0.062  Score=50.45  Aligned_cols=65  Identities=14%  Similarity=0.027  Sum_probs=46.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++++ +|+..   .....    ...|+...+++++++.      .+|+|+-..
T Consensus       160 g~tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~---~~~~~----~~~g~~~~~~l~ell~------~aDiV~l~~  223 (352)
T 3gg9_A          160 GQTLGIFGY-GKIGQLVAGYGRA-FGMNVLV-WGREN---SKERA----RADGFAVAESKDALFE------QSDVLSVHL  223 (352)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSHH---HHHHH----HHTTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHh-CCCEEEE-ECCCC---CHHHH----HhcCceEeCCHHHHHh------hCCEEEEec
Confidence            368999997 9999999998875 5888775 66531   11111    1245555679999985      689998765


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       224 P  224 (352)
T 3gg9_A          224 R  224 (352)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.12  E-value=0.17  Score=46.56  Aligned_cols=87  Identities=17%  Similarity=0.102  Sum_probs=50.0

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |.||.++|. |++|.. +++.+. ..++++.+ .|..........+    .+.|++++  .+.+.+.+     .++|+||
T Consensus         4 ~~~i~~iGi-Gg~Gms~~A~~L~-~~G~~V~~-~D~~~~~~~~~~L----~~~gi~v~~g~~~~~l~~-----~~~d~vV   71 (326)
T 3eag_A            4 MKHIHIIGI-GGTFMGGLAAIAK-EAGFEVSG-CDAKMYPPMSTQL----EALGIDVYEGFDAAQLDE-----FKADVYV   71 (326)
T ss_dssp             CCEEEEESC-CSHHHHHHHHHHH-HTTCEEEE-EESSCCTTHHHHH----HHTTCEEEESCCGGGGGS-----CCCSEEE
T ss_pred             CcEEEEEEE-CHHHHHHHHHHHH-hCCCEEEE-EcCCCCcHHHHHH----HhCCCEEECCCCHHHcCC-----CCCCEEE
Confidence            579999998 999996 777555 57888764 7754211111222    23466665  34444430     2589888


Q ss_pred             EcC-CchhHHHHHHHHHHcCCCEE
Q 022250          112 DFT-DASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       112 DfT-~p~~~~~~~~~al~~G~~vV  134 (300)
                      --. .|.. .+.+..|.++|+|++
T Consensus        72 ~Spgi~~~-~p~~~~a~~~gi~v~   94 (326)
T 3eag_A           72 IGNVAKRG-MDVVEAILNLGLPYI   94 (326)
T ss_dssp             ECTTCCTT-CHHHHHHHHTTCCEE
T ss_pred             ECCCcCCC-CHHHHHHHHcCCcEE
Confidence            433 1322 333455666666655

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=94.09  E-value=0.2  Score=48.26  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=29.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC--CcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd   68 (300)
                      .+++|.|.|++|.+|+.+++.+.+.+  +.++++...
T Consensus        72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R  108 (478)
T 4dqv_A           72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVR  108 (478)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            46899999999999999999998765  688887654

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=94.05  E-value=0.24  Score=47.95  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=59.6

Q ss_pred             cccccceeeEeecCCCC-----CcceEEEEcCCchHHHHHHHHHHh---cCC-cEEEEEEecCCC---Ccch--------
Q 022250           17 QNVKAKRFISCSTNPPQ-----SNIKVIINGAVKEIGRAAVIAVTK---ARG-MEVAGAIDSHSV---GEDI--------   76 (300)
Q Consensus        17 ~~~~~~~~~~~~~~~~~-----~~ikV~V~Ga~GrMG~~i~~~i~~---~~~-~eLvg~vd~~~~---g~d~--------   76 (300)
                      .+.|..|.-.|-.+.++     .|.||.|.|+||-+|+...+.+.+   .|+ +++++.......   .+.+        
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~Nv~lL~eQ~~ef~P~~v  133 (488)
T 3au8_A           54 KSRRCKRIKLCKKDLIDIGAIKKPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYL  133 (488)
T ss_dssp             -----------------------CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSCHHHHHHHHHHHCCSEE
T ss_pred             ccCceEEEEeccccchhhhhhhcceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCCHHHHHHHHHHcCCCEE
Confidence            34455677777666632     256799999999999999999987   444 999998763210   0000        


Q ss_pred             --------hhhhcCcC---CCCcceec---CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC
Q 022250           77 --------GMVCDMEQ---PLEIPVMS---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus        77 --------~~~~g~~~---~~gv~v~~---dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (300)
                              .++-....   ..++.++.   .+.++..    ..++|+|+-.-.-.+-..-...|+++|+.+-...
T Consensus       134 ~v~d~~~~~~L~~~l~~~~~~~~~v~~G~egl~e~a~----~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~IALAN  204 (488)
T 3au8_A          134 CIHDKSVYEELKELVKNIKDYKPIILCGDEGMKEICS----SNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALAN  204 (488)
T ss_dssp             EESCGGGTHHHHTGGGGSTTCCCEEEEHHHHHHHHHH----CTTCCEEEECCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             EEcCHHHHHHHHHHhhhhcCCCceEEeCHHHHHHHhc----CCCCCEEEEccccHhHHHHHHHHHHCCCcEEEec
Confidence                    01100000   11222321   2223332    2457888866666666777778888888887763

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.04  E-value=0.46  Score=43.32  Aligned_cols=70  Identities=13%  Similarity=0.129  Sum_probs=42.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcC-CcEEEEEEecCCCCcch-h-hhhcC----cCCCCcceecCHHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDI-G-MVCDM----EQPLEIPVMSDLTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~-~-~~~g~----~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (300)
                      |||+|+|+ |.||..++..+.... +.+++ .+|.+..-.+. . ++...    .....+..++|+++ +      .++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~-l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l------~~aD   71 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-T------ANSD   71 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-G------TTCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-H------CCCC
Confidence            58999998 999999999887642 56765 46754310000 0 11100    01122444578876 5      4799


Q ss_pred             EEEEcC
Q 022250          109 VVIDFT  114 (300)
Q Consensus       109 VVIDfT  114 (300)
                      +||...
T Consensus        72 vViiav   77 (310)
T 1guz_A           72 IVIITA   77 (310)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999776

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=94.00  E-value=0.19  Score=49.72  Aligned_cols=101  Identities=12%  Similarity=0.086  Sum_probs=59.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchh-----hhhcCcCCCCccee-c
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIG-----MVCDMEQPLEIPVM-S   92 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~~-----~~~g~~~~~gv~v~-~   92 (300)
                      ..||.|+|+ |.+|..+++.+. ..++.=+.++|.+.                .|+.-.     .+..+.+...+..+ .
T Consensus        32 ~~~VlvvG~-GGlGseiak~La-~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~  109 (531)
T 1tt5_A           32 SAHVCLINA-TATGTEILKNLV-LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE  109 (531)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHH-TTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESS
T ss_pred             cCeEEEECc-CHHHHHHHHHHH-HcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCC
Confidence            368999998 999999999988 46775566777421                111100     01111111122222 3


Q ss_pred             CHHHHHhcc-cccCCccEEEEcCCch-hHHHHHHHHHHcCCCEEEeC
Q 022250           93 DLTMVLGSI-SQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus        93 dl~~~l~~~-~~~~~~DVVIDfT~p~-~~~~~~~~al~~G~~vVigT  137 (300)
                      +++++++.. ..-.++|+|||++... +-......|.++++|+|.+-
T Consensus       110 ~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~  156 (531)
T 1tt5_A          110 SPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICR  156 (531)
T ss_dssp             CHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            444321100 0013689999998544 44566678999999999773

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=93.97  E-value=0.11  Score=50.13  Aligned_cols=135  Identities=14%  Similarity=0.137  Sum_probs=81.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCcCCCCc------------ceecCHHHHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLEI------------PVMSDLTMVL   98 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~gv------------~v~~dl~~~l   98 (300)
                      .+|+|.|. |+||+..++.+.+ .+.++|++.|+     ++.|-|..++.-.....+.            ..+.+.++++
T Consensus       211 k~vaVqG~-GnVG~~aa~~L~e-~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~  288 (421)
T 1v9l_A          211 KTVAIQGM-GNVGRWTAYWLEK-MGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIF  288 (421)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHT-TTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGG
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-CCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhh
Confidence            78999997 9999999998774 69999999996     2344454443322122221            1121335666


Q ss_pred             hcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcH---HHHHH
Q 022250           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI---GSILL  172 (300)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv~ll  172 (300)
                      .     .++|+++-+..+... .+++.   +-+..+|++--  .++++..   +.+ +++|  +++.|-+..   ||..-
T Consensus       289 ~-----~~~Dil~P~A~~~~I~~~~a~---~l~ak~V~EgAN~p~t~~a~---~~l-~~~G--i~~~PD~~aNaGGV~~S  354 (421)
T 1v9l_A          289 K-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAE---RIL-YERG--VVVVPDILANAGGVIMS  354 (421)
T ss_dssp             G-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHH---HHH-HTTT--CEEECHHHHSTHHHHHH
T ss_pred             c-----CCccEEEecCcCCccchhhHH---HcCceEEEecCCCcCCHHHH---HHH-HHCC--CEEeChHHhhCCCeeee
Confidence            5     689999988765544 33333   44899999865  4565432   223 3444  466665432   54431


Q ss_pred             -HHHHHHhccCCCCe
Q 022250          173 -QQAAISASFHYKNV  186 (300)
Q Consensus       173 -~~~a~~~~~~~~di  186 (300)
                       .+..+.+..+.|+-
T Consensus       355 ~~E~~qn~~~~~w~~  369 (421)
T 1v9l_A          355 YLEWVENLQWYIWDE  369 (421)
T ss_dssp             HHHHHHHHTTCCCCH
T ss_pred             HHHHHhhccccCCCH
Confidence             34556665556653

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=93.96  E-value=0.12  Score=52.95  Aligned_cols=33  Identities=21%  Similarity=0.170  Sum_probs=26.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +.||+|+|+ |.||..++..+.+ .+++++ ++|.+
T Consensus       312 ~~kV~VIGa-G~MG~~iA~~la~-aG~~V~-l~D~~  344 (725)
T 2wtb_A          312 IKKVAIIGG-GLMGSGIATALIL-SNYPVI-LKEVN  344 (725)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHT-TTCCEE-EECSS
T ss_pred             CcEEEEEcC-CHhhHHHHHHHHh-CCCEEE-EEECC
Confidence            568999998 9999999998874 578765 46653

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=93.94  E-value=0.13  Score=47.33  Aligned_cols=61  Identities=21%  Similarity=0.199  Sum_probs=43.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|+ |+||+.+++.+.. -++++.+ +|+...  ..        .  + .+.++++++.      .+|+|+...
T Consensus       144 g~~vgIIG~-G~IG~~~A~~l~~-~G~~V~~-~d~~~~--~~--------~--~-~~~~l~ell~------~aDvV~l~~  201 (311)
T 2cuk_A          144 GLTLGLVGM-GRIGQAVAKRALA-FGMRVVY-HARTPK--PL--------P--Y-PFLSLEELLK------EADVVSLHT  201 (311)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSCC--SS--------S--S-CBCCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHH-CCCEEEE-ECCCCc--cc--------c--c-ccCCHHHHHh------hCCEEEEeC
Confidence            468999998 9999999998875 5788764 665431  10        1  1 2568889885      689999776


Q ss_pred             Cch
Q 022250          115 DAS  117 (300)
Q Consensus       115 ~p~  117 (300)
                      +..
T Consensus       202 p~~  204 (311)
T 2cuk_A          202 PLT  204 (311)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=93.92  E-value=0.067  Score=49.34  Aligned_cols=89  Identities=13%  Similarity=0.069  Sum_probs=57.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .+|+|+|+ |.||+.+++.+......+-+-++|++ ..+...+...  ..+|+  ... |+++++.      ++|+||-+
T Consensus       122 ~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~--~~~g~~~~~~-~~~eav~------~aDIVi~a  190 (313)
T 3hdj_A          122 SVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIG--RRCGVPARMA-APADIAA------QADIVVTA  190 (313)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHH--HHHTSCEEEC-CHHHHHH------HCSEEEEC
T ss_pred             cEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHH--HhcCCeEEEe-CHHHHHh------hCCEEEEc
Confidence            68999997 99999999998875456667788876 2222211110  11233  345 8999985      79999987


Q ss_pred             CCchh-HHHHHHHHHHcCCCEE-EeC
Q 022250          114 TDAST-VYDNVKQATAFGMRSV-VYV  137 (300)
Q Consensus       114 T~p~~-~~~~~~~al~~G~~vV-igT  137 (300)
                      |+... +..  ...++.|.+++ +|+
T Consensus       191 T~s~~pvl~--~~~l~~G~~V~~vGs  214 (313)
T 3hdj_A          191 TRSTTPLFA--GQALRAGAFVGAIGS  214 (313)
T ss_dssp             CCCSSCSSC--GGGCCTTCEEEECCC
T ss_pred             cCCCCcccC--HHHcCCCcEEEECCC
Confidence            75421 111  23466787777 454

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=93.91  E-value=0.12  Score=48.54  Aligned_cols=109  Identities=15%  Similarity=0.195  Sum_probs=66.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|.|+ |++|+.+++.+.+ -+++++ +.|.+.   +..++.   ..++.... +.++++.     .++|+++-+.
T Consensus       175 GktV~I~G~-GnVG~~~A~~l~~-~GakVv-vsD~~~---~~~~~a---~~~ga~~v-~~~ell~-----~~~DIliP~A  239 (355)
T 1c1d_A          175 GLTVLVQGL-GAVGGSLASLAAE-AGAQLL-VADTDT---ERVAHA---VALGHTAV-ALEDVLS-----TPCDVFAPCA  239 (355)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH---HHHHHH---HHTTCEEC-CGGGGGG-----CCCSEEEECS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEE-EEeCCc---cHHHHH---HhcCCEEe-ChHHhhc-----CccceecHhH
Confidence            378999998 9999999998775 589999 888642   111121   12333322 5667775     5889998655


Q ss_pred             CchhH-HHHHHHHHHcCCCEEEeCCC--CCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          115 DASTV-YDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vVigTTG--~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      ..... .+++.   ..+..+|+++..  .++++.  . ++-++++  +++.|-+.
T Consensus       240 ~~~~I~~~~~~---~lk~~iVie~AN~p~t~~eA--~-~~L~~~g--Ilv~Pd~~  286 (355)
T 1c1d_A          240 MGGVITTEVAR---TLDCSVVAGAANNVIADEAA--S-DILHARG--ILYAPDFV  286 (355)
T ss_dssp             CSCCBCHHHHH---HCCCSEECCSCTTCBCSHHH--H-HHHHHTT--CEECCHHH
T ss_pred             HHhhcCHHHHh---hCCCCEEEECCCCCCCCHHH--H-HHHHhCC--EEEECCeE
Confidence            44333 34443   346889999873  343332  2 3345544  56666543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=93.90  E-value=0.15  Score=46.37  Aligned_cols=32  Identities=22%  Similarity=0.219  Sum_probs=26.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCC-----cEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARG-----MEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-----~eLvg~vd   68 (300)
                      +||.|.|++|.+|+.+++.+.+. +     .++++...
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~-g~~~~~~~V~~~~r   38 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLA-DTPGGPWKVYGVAR   38 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTST-TCTTCSEEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHhC-CCCCCceEEEEEeC
Confidence            68999999999999999998764 5     88877543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.89  E-value=0.12  Score=48.00  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=25.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      -||+|+|+ |-||+.|+...+. .+++++ ++|.+
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~-~G~~V~-l~D~~   38 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFAS-GGFRVK-LYDIE   38 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSC
T ss_pred             CeEEEECC-cHHHHHHHHHHHh-CCCeEE-EEECC
Confidence            58999998 9999999998774 588765 57743

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=93.89  E-value=0.053  Score=50.10  Aligned_cols=64  Identities=17%  Similarity=0.156  Sum_probs=42.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |+||+.+++.+.. -++++++ +|+..  .....+.    .  .....+++++++      .+|+|+-..
T Consensus       139 g~tvGIiG~-G~IG~~vA~~l~~-~G~~V~~-~dr~~--~~~~~~~----~--~~~~~~l~ell~------~aDiV~l~~  201 (315)
T 3pp8_A          139 EFSVGIMGA-GVLGAKVAESLQA-WGFPLRC-WSRSR--KSWPGVE----S--YVGREELRAFLN------QTRVLINLL  201 (315)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHT-TTCCEEE-EESSC--CCCTTCE----E--EESHHHHHHHHH------TCSEEEECC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHH-CCCEEEE-EcCCc--hhhhhhh----h--hcccCCHHHHHh------hCCEEEEec
Confidence            478999998 9999999998874 5888776 56532  1111000    0  001257889985      789998665


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       202 P  202 (315)
T 3pp8_A          202 P  202 (315)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=93.88  E-value=0.15  Score=45.02  Aligned_cols=74  Identities=22%  Similarity=0.194  Sum_probs=49.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ....       .                   ..+. +..|.+
T Consensus        29 k~vlVTGas~gIG~aia~~l~~-~G~~V~~~-~r~~--~~~~-------~-------------------~~~~~~~~Dv~   78 (260)
T 3un1_A           29 KVVVITGASQGIGAGLVRAYRD-RNYRVVAT-SRSI--KPSA-------D-------------------PDIHTVAGDIS   78 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEEE-ESSC--CCCS-------S-------------------TTEEEEESCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE-eCCh--hhcc-------c-------------------CceEEEEccCC
Confidence            4689999999999999999885 58887754 4332  0000       0                   0111 345778


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++|+-.-|
T Consensus        79 d~~~v~~~~~~~~~~~g~iD~lv~nAg  105 (260)
T 3un1_A           79 KPETADRIVREGIERFGRIDSLVNNAG  105 (260)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            888877777766655  7888887665

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=93.84  E-value=0.18  Score=47.15  Aligned_cols=62  Identities=23%  Similarity=0.221  Sum_probs=43.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++++ +|+..  ..  ..     ..++ .+.++++++.      .+|+|+-..
T Consensus       148 gktvgIiGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~--~~--~~-----~~~~-~~~~l~ell~------~aDvV~l~~  208 (343)
T 2yq5_A          148 NLTVGLIGV-GHIGSAVAEIFSA-MGAKVIA-YDVAY--NP--EF-----EPFL-TYTDFDTVLK------EADIVSLHT  208 (343)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSC--CG--GG-----TTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEec-CHHHHHHHHHHhh-CCCEEEE-ECCCh--hh--hh-----hccc-cccCHHHHHh------cCCEEEEcC
Confidence            368999997 9999999998875 5888775 66543  11  11     1122 2448999985      789999665


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       209 P  209 (343)
T 2yq5_A          209 P  209 (343)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.84  E-value=0.34  Score=43.00  Aligned_cols=85  Identities=19%  Similarity=0.237  Sum_probs=53.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+..++....+..  ....++.              +++-+.   .... -+..|.+
T Consensus        32 k~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv~   91 (271)
T 3v2g_A           32 KTAFVTGGSRGIGAAIAKRLAL-EGAAVALTYVNAA--ERAQAVV--------------SEIEQA---GGRAVAIRADNR   91 (271)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHHH--------------HHHHhc---CCcEEEEECCCC
Confidence            4699999999999999999885 5888765443321  1111110              111110   0111 2456888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++.+.+.+..+.+.  ++.+|+=..|.
T Consensus        92 d~~~v~~~~~~~~~~~g~iD~lvnnAg~  119 (271)
T 3v2g_A           92 DAEAIEQAIRETVEALGGLDILVNSAGI  119 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence            888888877776665  78999876653

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=93.83  E-value=0.42  Score=41.92  Aligned_cols=85  Identities=18%  Similarity=0.246  Sum_probs=53.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++...+++.  ....+.              .+++.+.   ..+.. +..|.+
T Consensus        27 k~vlVTGas~gIG~~la~~l~~-~G~~v~i~~~r~~--~~~~~~--------------~~~l~~~---~~~~~~~~~Dl~   86 (267)
T 4iiu_A           27 RSVLVTGASKGIGRAIARQLAA-DGFNIGVHYHRDA--AGAQET--------------LNAIVAN---GGNGRLLSFDVA   86 (267)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH--------------HHHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCch--HHHHHH--------------HHHHHhc---CCceEEEEecCC
Confidence            5799999999999999999885 5788766554331  111110              1122110   01222 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++.+|+-..|.
T Consensus        87 ~~~~~~~~~~~~~~~~g~id~li~nAg~  114 (267)
T 4iiu_A           87 NREQCREVLEHEIAQHGAWYGVVSNAGI  114 (267)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHhCCccEEEECCCC
Confidence            888888777766554  68888876653

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.80  E-value=0.045  Score=49.70  Aligned_cols=68  Identities=13%  Similarity=0.051  Sum_probs=41.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .++.|+|+ |.||+.++..+.+ .++.-+-+++++.  ..+..++   .......++++++++      .++|+||..|+
T Consensus       118 k~vlvlGa-Gg~g~aia~~L~~-~G~~~v~v~~R~~--~~a~~la---~~~~~~~~~~~~~~~------~~aDiVInaTp  184 (277)
T 3don_A          118 AYILILGA-GGASKGIANELYK-IVRPTLTVANRTM--SRFNNWS---LNINKINLSHAESHL------DEFDIIINTTP  184 (277)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHT-TCCSCCEEECSCG--GGGTTCC---SCCEEECHHHHHHTG------GGCSEEEECCC
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHH---HhcccccHhhHHHHh------cCCCEEEECcc
Confidence            58999998 9999999998875 4652234566543  2223332   112222244566655      36899997775


Q ss_pred             c
Q 022250          116 A  116 (300)
Q Consensus       116 p  116 (300)
                      .
T Consensus       185 ~  185 (277)
T 3don_A          185 A  185 (277)
T ss_dssp             -
T ss_pred             C
Confidence            3

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=93.80  E-value=0.36  Score=41.42  Aligned_cols=83  Identities=19%  Similarity=0.210  Sum_probs=53.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecC---HHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d---l~~~l~~~~~~~~~DVVI  111 (300)
                      |.|+.|+|+ |..|+.+++.+.+ .++++++.+|.+..   ...      -.|+|++..   ++++..     ...|-++
T Consensus        12 ~k~v~IiGA-Gg~g~~v~~~l~~-~~~~~vgfiDd~~~---~~~------~~g~~Vlg~~~~~~~~~~-----~~~~~v~   75 (220)
T 4ea9_A           12 IGGVVIIGG-GGHAKVVIESLRA-CGETVAAIVDADPT---RRA------VLGVPVVGDDLALPMLRE-----QGLSRLF   75 (220)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHH-TTCCEEEEECSCC------C------BTTBCEEESGGGHHHHHH-----TTCCEEE
T ss_pred             CCCEEEEcC-CHHHHHHHHHHHh-CCCEEEEEEeCCcc---cCc------CCCeeEECCHHHHHHhhc-----ccccEEE
Confidence            468999998 9999999998876 78999999996531   111      246677643   444443     2344333


Q ss_pred             Ec-CCchhHHHHHHHHHHcCCCE
Q 022250          112 DF-TDASTVYDNVKQATAFGMRS  133 (300)
Q Consensus       112 Df-T~p~~~~~~~~~al~~G~~v  133 (300)
                      -. ..+..-.+..+.+.+.|..+
T Consensus        76 iAIg~~~~R~~i~~~l~~~g~~~   98 (220)
T 4ea9_A           76 VAIGDNRLRQKLGRKARDHGFSL   98 (220)
T ss_dssp             ECCCCHHHHHHHHHHHHHTTCEE
T ss_pred             EecCCHHHHHHHHHHHHhcCCCc
Confidence            22 23444466667777777543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.78  E-value=0.19  Score=43.35  Aligned_cols=119  Identities=10%  Similarity=0.072  Sum_probs=66.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e---cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (300)
                      ..+|.|+|+ |++|+.+++.+.+ .+.  +-++|++.  ..+..+.     .++.+ +   ++.+.+.+.  .-.++|+|
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~-~g~--v~vid~~~--~~~~~~~-----~~~~~i~gd~~~~~~l~~a--~i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRG-SEV--FVLAEDEN--VRKKVLR-----SGANFVHGDPTRVSDLEKA--NVRGARAV   75 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTT-SEE--EEEESCGG--GHHHHHH-----TTCEEEESCTTCHHHHHHT--TCTTCSEE
T ss_pred             CCEEEEECC-ChHHHHHHHHHHh-CCe--EEEEECCH--HHHHHHh-----cCCeEEEcCCCCHHHHHhc--CcchhcEE
Confidence            468999998 9999999998764 355  44667542  1122111     22322 1   233322110  01478999


Q ss_pred             EEcCCchhH-HHHHHHHHHcCCC--EEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250          111 IDFTDASTV-YDNVKQATAFGMR--SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (300)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G~~--vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll  172 (300)
                      |-.+..+.. ...+..+.+.+.+  +|.-.  .+++..+.+.    +.|+-.++.|....+-.+.
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~~~iia~~--~~~~~~~~l~----~~G~~~vi~p~~~~a~~l~  134 (234)
T 2aef_A           76 IVDLESDSETIHCILGIRKIDESVRIIAEA--ERYENIEQLR----MAGADQVISPFVISGRLMS  134 (234)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEEEEEC--SSGGGHHHHH----HHTCSEEECHHHHHHHHHH
T ss_pred             EEcCCCcHHHHHHHHHHHHHCCCCeEEEEE--CCHhHHHHHH----HCCCCEEECHHHHHHHHHH
Confidence            877665543 4444566666654  44322  3333434444    3456678888777776654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=93.71  E-value=0.11  Score=47.27  Aligned_cols=122  Identities=14%  Similarity=0.075  Sum_probs=64.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .-++.|+|+ |++|+.++..+.+ .+..=+-+++++.  ..+.+++   ...+..   +++++-+     .++|+||..|
T Consensus       122 ~k~vlvlGa-GGaaraia~~L~~-~G~~~v~v~nRt~--~ka~~La---~~~~~~---~~~~l~~-----l~~DivInaT  186 (282)
T 3fbt_A          122 NNICVVLGS-GGAARAVLQYLKD-NFAKDIYVVTRNP--EKTSEIY---GEFKVI---SYDELSN-----LKGDVIINCT  186 (282)
T ss_dssp             TSEEEEECS-STTHHHHHHHHHH-TTCSEEEEEESCH--HHHHHHC---TTSEEE---EHHHHTT-----CCCSEEEECS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHH---HhcCcc---cHHHHHh-----ccCCEEEECC
Confidence            368999998 9999999998875 4663344566643  2333443   222211   2333321     1689999888


Q ss_pred             CchhH-----HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          115 DASTV-----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       115 ~p~~~-----~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      +.-..     ...-...+..+ .+|+- .-+++.+ -.|.+.|++.|..++=    .+++ |+.|++.++
T Consensus       187 p~Gm~~~~~~~pi~~~~l~~~-~~v~D-lvY~P~~-T~ll~~A~~~G~~~~~----Gl~M-Lv~Qa~~~f  248 (282)
T 3fbt_A          187 PKGMYPKEGESPVDKEVVAKF-SSAVD-LIYNPVE-TLFLKYARESGVKAVN----GLYM-LVSQAAASE  248 (282)
T ss_dssp             STTSTTSTTCCSSCHHHHTTC-SEEEE-SCCSSSS-CHHHHHHHHTTCEEEC----SHHH-HHHHHHHHH
T ss_pred             ccCccCCCccCCCCHHHcCCC-CEEEE-EeeCCCC-CHHHHHHHHCcCeEeC----cHHH-HHHHHHHHH
Confidence            53110     01112334433 44433 2223222 2366677787877552    4554 445555444

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.71  E-value=0.18  Score=47.62  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=27.7

Q ss_pred             CCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      .||.++.||+|+|. |..|+.+++++.+ -+++++.+-
T Consensus        19 ~~mm~~~~I~ilGg-G~lg~~l~~aa~~-lG~~v~~~d   54 (403)
T 3k5i_A           19 GHMWNSRKVGVLGG-GQLGRMLVESANR-LNIQVNVLD   54 (403)
T ss_dssp             --CCSCCEEEEECC-SHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             ccCCCCCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEE
Confidence            45444689999997 9999999998875 588887654

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=93.71  E-value=0.053  Score=50.12  Aligned_cols=72  Identities=13%  Similarity=0.138  Sum_probs=44.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc------EEEEEEecC----C---CCcchhhhhcC--cCCCCcceecCHHHHHh
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSH----S---VGEDIGMVCDM--EQPLEIPVMSDLTMVLG   99 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~------eLvg~vd~~----~---~g~d~~~~~g~--~~~~gv~v~~dl~~~l~   99 (300)
                      ++||+|+|++|.+|+.++..+....-+      +|+. +|.+    .   .| .+.++...  .....+..++++.+++ 
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l-~Di~~~~~~~~~~g-~~~dl~~~~~~~~~~i~~~~~~~~al-   81 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQL-LEIPNEKAQKALQG-VMMEIDDCAFPLLAGMTAHADPMTAF-   81 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEE-ECCSCHHHHHHHHH-HHHHHHTTTCTTEEEEEEESSHHHHT-
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEE-EcCCCccccccchh-hHHHHhhhcccccCcEEEecCcHHHh-
Confidence            489999998899999999988764322      6665 7754    1   01 01112210  0011344457888887 


Q ss_pred             cccccCCccEEEEcC
Q 022250          100 SISQSKARAVVIDFT  114 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT  114 (300)
                           .++|+||...
T Consensus        82 -----~~aD~Vi~~a   91 (329)
T 1b8p_A           82 -----KDADVALLVG   91 (329)
T ss_dssp             -----TTCSEEEECC
T ss_pred             -----CCCCEEEEeC
Confidence                 4789988653

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=93.71  E-value=0.14  Score=45.60  Aligned_cols=31  Identities=16%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhc-CCcEEEEEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~v   67 (300)
                      ||.|.|++|.+|+.+++.+.+. .+.++++..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~   32 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASD   32 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEE
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence            6899999999999999998875 367777643

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=93.71  E-value=0.26  Score=45.32  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=27.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |.+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus        28 ~k~vlVtGatG~IG~~l~~~L~~-~g~~V~~~~r   60 (381)
T 1n7h_A           28 RKIALITGITGQDGSYLTEFLLG-KGYEVHGLIR   60 (381)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCeEEEEcCCchHHHHHHHHHHH-CCCEEEEEec
Confidence            36899999999999999999886 4788887543

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=93.69  E-value=0.15  Score=49.01  Aligned_cols=136  Identities=16%  Similarity=0.194  Sum_probs=83.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCcCCCC-c---c-eecCHHHHHhccccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-I---P-VMSDLTMVLGSISQS  104 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~~~g-v---~-v~~dl~~~l~~~~~~  104 (300)
                      ..+|+|.|+ |++|+..++.+.+ .+.++|++.|++     +.|-|...+.....+.+ +   + .+-+.++++.     
T Consensus       221 g~~vaVqG~-GnVG~~aa~~l~e-~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~-----  293 (424)
T 3k92_A          221 NARIIIQGF-GNAGSFLAKFMHD-AGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLE-----  293 (424)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHH-HTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHH-----
T ss_pred             cCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCcccee-----
Confidence            378999997 9999999998775 589999999953     44666554432222222 1   1 1124577776     


Q ss_pred             CCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---HHHH-HHHHHH
Q 022250          105 KARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GSIL-LQQAAI  177 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv~l-l~~~a~  177 (300)
                      .++||+|-++..... .+++.   +-+..+|++-- + .+++..+.    -+++|  +++.|-+..   ||.. -.+.++
T Consensus       294 ~~~DIliPcA~~n~I~~~~a~---~l~ak~V~EgAN~p~t~eA~~i----L~~rG--I~~~PD~~aNAGGV~vS~~E~~q  364 (424)
T 3k92_A          294 KDCDILVPAAISNQITAKNAH---NIQASIVVERANGPTTIDATKI----LNERG--VLLVPDILASAGGVTVSYFEWVQ  364 (424)
T ss_dssp             SCCSEEEECSCSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHH----HHHTT--CEEECHHHHTTHHHHHHHHHHHH
T ss_pred             ccccEEeecCcccccChhhHh---hcCceEEEcCCCCCCCHHHHHH----HHHCC--CEEECchHhcCCCEEeehhHHHh
Confidence            689999988754433 33443   33889998865 3 45543222    34444  577787654   3322 134455


Q ss_pred             HhccCCCCe
Q 022250          178 SASFHYKNV  186 (300)
Q Consensus       178 ~~~~~~~di  186 (300)
                      .+..++|+.
T Consensus       365 n~~~~~w~~  373 (424)
T 3k92_A          365 NNQGYYWSE  373 (424)
T ss_dssp             HHHTCCCCH
T ss_pred             cccccCCCH
Confidence            555555653

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=93.68  E-value=0.16  Score=48.85  Aligned_cols=136  Identities=18%  Similarity=0.243  Sum_probs=80.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCcCCCC-cce-ecCHHHHHhcccccCCc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IPV-MSDLTMVLGSISQSKAR  107 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~~~g-v~v-~~dl~~~l~~~~~~~~~  107 (300)
                      ..+|+|.|. |++|+..++.+.+ .+..+|++.|+     ++.|-|...+.......+ +.- .-+-++++.     .++
T Consensus       218 gk~vaVqG~-GnVG~~~a~~L~~-~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~-----~~~  290 (419)
T 3aoe_E          218 GARVVVQGL-GQVGAAVALHAER-LGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFG-----LEA  290 (419)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGG-----SSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhc-----cCc
Confidence            378999997 9999999998875 69999999996     334545443321100111 110 012245554     689


Q ss_pred             cEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcH---HHHHH-HHHHHHhc
Q 022250          108 AVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI---GSILL-QQAAISAS  180 (300)
Q Consensus       108 DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv~ll-~~~a~~~~  180 (300)
                      ||++-++.+... .+++.   +.+..+|++--  .++++..+.   +. ++|  +++.|-+..   ||..- .+..+.+.
T Consensus       291 DVliP~A~~n~i~~~~A~---~l~ak~V~EgAN~p~t~~A~~~---L~-~~G--i~~~PD~~aNaGGV~~S~~E~~qn~~  361 (419)
T 3aoe_E          291 EVLVLAAREGALDGDRAR---QVQAQAVVEVANFGLNPEAEAY---LL-GKG--ALVVPDLLSGGGGLLASYLEWVQDLN  361 (419)
T ss_dssp             SEEEECSCTTCBCHHHHT---TCCCSEEEECSTTCBCHHHHHH---HH-HHT--CEEECHHHHTCHHHHHHHHHHHHHHH
T ss_pred             eEEEecccccccccchHh---hCCceEEEECCCCcCCHHHHHH---HH-HCC--CEEECHHHHhCCCchhhHHHHhhccc
Confidence            999999876655 44443   45899999865  355543322   23 334  466665442   44331 34565665


Q ss_pred             cCCCCe
Q 022250          181 FHYKNV  186 (300)
Q Consensus       181 ~~~~di  186 (300)
                      .+.|+-
T Consensus       362 ~~~w~~  367 (419)
T 3aoe_E          362 MFFWSP  367 (419)
T ss_dssp             TCCCCH
T ss_pred             ccCCCH
Confidence            556654

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=93.66  E-value=0.19  Score=48.26  Aligned_cols=62  Identities=21%  Similarity=0.109  Sum_probs=44.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+.. -++++++ +|+..  ..        ...+.....+++++++      .+|+|+-..
T Consensus       156 gktvGIIGl-G~IG~~vA~~l~~-~G~~V~~-yd~~~--~~--------~~~~~~~~~sl~ell~------~aDvV~lhv  216 (416)
T 3k5p_A          156 GKTLGIVGY-GNIGSQVGNLAES-LGMTVRY-YDTSD--KL--------QYGNVKPAASLDELLK------TSDVVSLHV  216 (416)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECTTC--CC--------CBTTBEECSSHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHH-CCCEEEE-ECCcc--hh--------cccCcEecCCHHHHHh------hCCEEEEeC
Confidence            368999997 9999999998775 5888775 67542  10        0112334578999995      789998655


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       217 P  217 (416)
T 3k5p_A          217 P  217 (416)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=93.59  E-value=0.19  Score=48.74  Aligned_cols=138  Identities=12%  Similarity=0.170  Sum_probs=81.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCc----chhhhhcCcCC--C---------CcceecCH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGE----DIGMVCDMEQP--L---------EIPVMSDL   94 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~----d~~~~~g~~~~--~---------gv~v~~dl   94 (300)
                      ..+|+|.|. |+||+..++.+.+ .+.++|++.|+     ++.|-    |+..+......  .         +.+..+ .
T Consensus       230 g~~v~VqG~-GnVG~~~a~~L~~-~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~-~  306 (449)
T 1bgv_A          230 GKTVALAGF-GNVAWGAAKKLAE-LGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP-G  306 (449)
T ss_dssp             TCEEEECCS-SHHHHHHHHHHHH-HTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE-T
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEeC-c
Confidence            378999997 9999999988764 58999999994     23343    22222110000  0         111111 1


Q ss_pred             HHHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCc---HH
Q 022250           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IG  168 (300)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~S---iG  168 (300)
                      ++++.     .++|+++-+..+... .+++.....+|+.+|++--  .++++..   +.+.++.|+  ++.|-+.   =|
T Consensus       307 ~e~~~-----~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~---~~l~~~~Gi--~~~PD~~aNaGG  376 (449)
T 1bgv_A          307 EKPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL---RFLMQQPNM--VVAPSKAVNAGG  376 (449)
T ss_dssp             CCGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH---HHHHHCTTC--EEECHHHHTTHH
T ss_pred             hhhhc-----CCcceeeccccccccchhhHHHHHhcCCeEEEeCCCCcCCHHHH---HHHHHcCCE--EEEChHHhcCCC
Confidence            23453     689999988766554 7888888889999999865  4666543   333333155  5555443   25


Q ss_pred             HHHH-HHHHHHhccCCCC
Q 022250          169 SILL-QQAAISASFHYKN  185 (300)
Q Consensus       169 v~ll-~~~a~~~~~~~~d  185 (300)
                      |..- .+..+.+....|+
T Consensus       377 V~~S~~E~~qn~~~~~w~  394 (449)
T 1bgv_A          377 VLVSGFEMSQNSERLSWT  394 (449)
T ss_dssp             HHHHHHHHHHHHHTSCCC
T ss_pred             ceeehhhhhccccccccc
Confidence            5432 2333333344454

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.51  E-value=0.096  Score=49.02  Aligned_cols=70  Identities=21%  Similarity=0.267  Sum_probs=43.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCC---CC--cchhhhhcCcCCCCcceecCHHHHHhcccccCCcc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~---~g--~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (300)
                      ++||+|+|++|.+|+.++..+....- -||+ .+|...   .|  .|..... . ....+..++|+.+.+      .++|
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evv-LiDi~~~k~~g~a~DL~~~~-~-~~~~i~~t~d~~~al------~dAD   78 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLC-LYDPFAVGLEGVAEEIRHCG-F-EGLNLTFTSDIKEAL------TDAK   78 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEE-EECSCHHHHHHHHHHHHHHC-C-TTCCCEEESCHHHHH------TTEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEE-EEeCCchhHHHHHHhhhhCc-C-CCCceEEcCCHHHHh------CCCC
Confidence            58999999779999999987765432 2544 577531   11  1111111 1 112445567888877      4899


Q ss_pred             EEEEc
Q 022250          109 VVIDF  113 (300)
Q Consensus       109 VVIDf  113 (300)
                      +||..
T Consensus        79 vVvit   83 (343)
T 3fi9_A           79 YIVSS   83 (343)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99865

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=93.50  E-value=0.091  Score=53.82  Aligned_cols=33  Identities=15%  Similarity=0.203  Sum_probs=26.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ..||+|+|+ |.||..++..+.+ .+++++ ++|.+
T Consensus       314 i~kV~VIGa-G~MG~~iA~~la~-aG~~V~-l~D~~  346 (715)
T 1wdk_A          314 VKQAAVLGA-GIMGGGIAYQSAS-KGTPIL-MKDIN  346 (715)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHH-TTCCEE-EECSS
T ss_pred             CCEEEEECC-ChhhHHHHHHHHh-CCCEEE-EEECC
Confidence            468999998 9999999998875 577766 46754

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=93.44  E-value=0.37  Score=44.76  Aligned_cols=32  Identities=9%  Similarity=0.172  Sum_probs=26.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      -+|.|+|++|.+|...++.+. ..+.++++..+
T Consensus       166 ~~VlV~Ga~G~vG~~a~qla~-~~Ga~Vi~~~~  197 (371)
T 3gqv_A          166 VYVLVYGGSTATATVTMQMLR-LSGYIPIATCS  197 (371)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEEC
T ss_pred             cEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeC
Confidence            469999999999999999776 46889888753

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=93.44  E-value=0.073  Score=51.26  Aligned_cols=136  Identities=12%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC----------CCCcchhhhhcCcCCCC-ccee-----cCHHHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------SVGEDIGMVCDMEQPLE-IPVM-----SDLTMVL   98 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------~~g~d~~~~~g~~~~~g-v~v~-----~dl~~~l   98 (300)
                      ..||+|.|. |++|+..++.+.+ .+..+|++.|+.          +.|-|..++.-.....+ +.-|     -+.++++
T Consensus       212 g~~vaVqG~-GnVG~~~a~~L~~-~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~~~~  289 (421)
T 2yfq_A          212 DAKIAVQGF-GNVGTFTVKNIER-QGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFW  289 (421)
T ss_dssp             GSCEEEECC-SHHHHHHHHHHHH-TTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC----------------
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCccchh
Confidence            378999997 9999999998875 689999998865          22434332221100000 1001     1224555


Q ss_pred             hcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCc---HHHHHH
Q 022250           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS---IGSILL  172 (300)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~S---iGv~ll  172 (300)
                      .     .++||+|.++.+... .+++.   +.+..+|++.- + ++++..+.|.    ++|+  ++.|-+.   =||.+-
T Consensus       290 ~-----~~~DIliP~A~~n~i~~~~A~---~l~ak~VvEgAN~P~t~ea~~il~----~~GI--~~~Pd~~aNaGGV~vS  355 (421)
T 2yfq_A          290 T-----KEYDIIVPAALENVITGERAK---TINAKLVCEAANGPTTPEGDKVLT----ERGI--NLTPDILTNSGGVLVS  355 (421)
T ss_dssp             ----------CEEECSCSSCSCHHHHT---TCCCSEEECCSSSCSCHHHHHHHH----HHTC--EEECHHHHTTHHHHHH
T ss_pred             c-----CCccEEEEcCCcCcCCcccHH---HcCCeEEEeCCccccCHHHHHHHH----HCCC--EEEChHHHhCCCeEEE
Confidence            4     589999999876554 44444   44888888765 3 5554333332    4444  5555443   254432


Q ss_pred             -HHHHHHhccCCCCe
Q 022250          173 -QQAAISASFHYKNV  186 (300)
Q Consensus       173 -~~~a~~~~~~~~di  186 (300)
                       .+..+....++|+-
T Consensus       356 ~~E~~qN~~~~~w~~  370 (421)
T 2yfq_A          356 YYEWVQNQYGYYWTE  370 (421)
T ss_dssp             HHHHHHHHHTCCCCH
T ss_pred             EEEEEecCccCcCCH
Confidence             34455555556653

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.42  E-value=0.68  Score=41.14  Aligned_cols=85  Identities=20%  Similarity=0.203  Sum_probs=52.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++....++.  ....++.              +++-..   ...+. +..|.+
T Consensus        30 k~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dv~   89 (280)
T 4da9_A           30 PVAIVTGGRRGIGLGIARALAA-SGFDIAITGIGDA--EGVAPVI--------------AELSGL---GARVIFLRADLA   89 (280)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCeEEEEeCCCH--HHHHHHH--------------HHHHhc---CCcEEEEEecCC
Confidence            4589999999999999999885 5788765432221  1111110              111110   01222 345889


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        90 d~~~v~~~~~~~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A           90 DLSSHQATVDAVVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             SGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            999888888777665  78999877665

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.42  E-value=0.16  Score=46.68  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=25.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~   70 (300)
                      ++||+|+|+ |.||..++..+....- -+|+ .+|.+
T Consensus         6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~-l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDAN   40 (316)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCCEEE-EEeCC
Confidence            589999998 9999999988875432 2554 47754

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=93.40  E-value=0.17  Score=45.45  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=27.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      .++|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r   43 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLE-HGYKVRGTAR   43 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCEEEEECCccHHHHHHHHHHHH-CCCEEEEEeC
Confidence            47899999999999999999886 4788887553

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=93.38  E-value=0.5  Score=40.35  Aligned_cols=85  Identities=24%  Similarity=0.294  Sum_probs=52.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-c-EEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-A-VVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-D-VVIDf  113 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++...+++.  ....++.              +++-..   ..+. . +..|.
T Consensus         2 k~vlITGasggiG~~~a~~l~~-~G~~v~~~~~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~~D~   61 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAE-DGFALAIHYGQNR--EKAEEVA--------------EEARRR---GSPLVAVLGANL   61 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESSCH--HHHHHHH--------------HHHHHT---TCSCEEEEECCT
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHHH--------------HHHHhc---CCceEEEEeccC
Confidence            4799999999999999999885 5788887655432  1111110              111100   0111 1 34478


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      +.++...+.+..+.+.  ++.+|+=..|.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~d~li~~Ag~   90 (245)
T 2ph3_A           62 LEAEAATALVHQAAEVLGGLDTLVNNAGI   90 (245)
T ss_dssp             TSHHHHHHHHHHHHHHHTCCCEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            8888777766665543  68888876653

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=93.33  E-value=0.28  Score=43.64  Aligned_cols=30  Identities=33%  Similarity=0.506  Sum_probs=25.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      |||.|.|++|.+|+.+++.+.+ .+.++++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~-~G~~V~~~   30 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLA-RGLEVAVL   30 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHH-CCCEEEEE
Confidence            4899999999999999999885 57888764

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=93.32  E-value=0.34  Score=43.68  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=27.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      +.+|.|.|++|.+|+.+++.+.+ .+.++++.+.
T Consensus         5 ~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r   37 (337)
T 2c29_D            5 SETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR   37 (337)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEC
Confidence            47899999999999999999875 5788887654

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.30  E-value=0.13  Score=47.69  Aligned_cols=71  Identities=18%  Similarity=0.119  Sum_probs=41.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCC---CCcchhhhhcCcC-CCCcceecCHHHHHhcccccCCccE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VGEDIGMVCDMEQ-PLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---~g~d~~~~~g~~~-~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      ++||+|+|+ |.||..++..+...+-+ +|+ .+|...   .|. +-++..... ..++.++++..+.+      .++|+
T Consensus         9 ~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~-l~D~~~~k~~g~-a~DL~~~~~~~~~~~i~~~~~~a~------~~aDi   79 (326)
T 3vku_A            9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIG-IVDIFKDKTKGD-AIDLEDALPFTSPKKIYSAEYSDA------KDADL   79 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSCHHHHHHH-HHHHHTTGGGSCCCEEEECCGGGG------TTCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEeCChHHHHHH-HhhHhhhhhhcCCcEEEECcHHHh------cCCCE
Confidence            589999998 99999999988765443 544 577532   111 011111100 01445554434445      47999


Q ss_pred             EEEcC
Q 022250          110 VIDFT  114 (300)
Q Consensus       110 VIDfT  114 (300)
                      ||...
T Consensus        80 Vvi~a   84 (326)
T 3vku_A           80 VVITA   84 (326)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            88654

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=93.26  E-value=0.29  Score=43.61  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=27.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      +++|.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus        12 ~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   43 (321)
T 2pk3_A           12 SMRALITGVAGFVGKYLANHLTE-QNVEVFGTS   43 (321)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             cceEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            58899999999999999999886 478888744

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=93.24  E-value=0.13  Score=47.67  Aligned_cols=65  Identities=15%  Similarity=0.133  Sum_probs=44.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|. |+||+.+++.+. .-++++++ +|+...  +....    ...|+. +.+++++++      .+|+|+-..
T Consensus       145 g~tvGIIG~-G~IG~~vA~~l~-~~G~~V~~-~d~~~~--~~~~~----~~~g~~-~~~l~ell~------~aDvV~l~~  208 (330)
T 4e5n_A          145 NATVGFLGM-GAIGLAMADRLQ-GWGATLQY-HEAKAL--DTQTE----QRLGLR-QVACSELFA------SSDFILLAL  208 (330)
T ss_dssp             TCEEEEECC-SHHHHHHHHHTT-TSCCEEEE-ECSSCC--CHHHH----HHHTEE-ECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEee-CHHHHHHHHHHH-HCCCEEEE-ECCCCC--cHhHH----HhcCce-eCCHHHHHh------hCCEEEEcC
Confidence            478999997 999999999876 45888764 676431  11111    122333 358999985      689998665


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       209 P  209 (330)
T 4e5n_A          209 P  209 (330)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=93.21  E-value=0.27  Score=44.80  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~   32 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLE-KGYEVHGIK   32 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEE
Confidence            46899999999999999999886 478877653

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.16  E-value=0.1  Score=43.68  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      -+|.|+|++|.+|+.+++.+.. .+.++++.
T Consensus        40 ~~vlV~Ga~ggiG~~~~~~~~~-~G~~V~~~   69 (198)
T 1pqw_A           40 ERVLIHSATGGVGMAAVSIAKM-IGARIYTT   69 (198)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-HTCEEEEE
T ss_pred             CEEEEeeCCChHHHHHHHHHHH-cCCEEEEE
Confidence            5799999889999999998774 46777653

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=93.15  E-value=0.92  Score=40.11  Aligned_cols=83  Identities=13%  Similarity=0.121  Sum_probs=51.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++-+.   ..++. +..|.+
T Consensus        45 k~vlITGasggIG~~la~~L~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dl~  103 (285)
T 2c07_A           45 KVALVTGAGRGIGREIAKMLAK-SVSHVIC-ISRTQ--KSCDSVV--------------DEIKSF---GYESSGYAGDVS  103 (285)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-TSSEEEE-EESSH--HHHHHHH--------------HHHHTT---TCCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-cCCEEEE-EcCCH--HHHHHHH--------------HHHHhc---CCceeEEECCCC
Confidence            5799999999999999999875 5788876 55431  1111110              111100   01222 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus       104 d~~~v~~~~~~~~~~~~~id~li~~Ag  130 (285)
T 2c07_A          104 KKEEISEVINKILTEHKNVDILVNNAG  130 (285)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            888877777665543  5888887665

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=93.15  E-value=0.25  Score=43.69  Aligned_cols=56  Identities=25%  Similarity=0.231  Sum_probs=25.2

Q ss_pred             eccccCcccccccceeeEeecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEE
Q 022250            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (300)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg   65 (300)
                      |-+.+|+.++-++.+-..+..-..-...++.|.|++|.+|+.+++.+.+ .+.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~m~~l~gk~vlVTGas~gIG~aia~~la~-~G~~V~~   57 (266)
T 3uxy_A            2 HHHHHHSSGVDLGTENLYFQSMQGFEGKVALVTGAAGGIGGAVVTALRA-AGARVAV   57 (266)
T ss_dssp             ------------------------CTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEE
T ss_pred             CccccCCCCCCCCCCCcchhhhhCCCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEE
Confidence            5566677776665554443321111135689999999999999999885 5777664

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.14  E-value=0.07  Score=48.18  Aligned_cols=121  Identities=12%  Similarity=0.109  Sum_probs=64.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|.|+|+ |+||+.++..+.+. +..=+-+++++.  ..+..++   ..++....++++  +      .++|+||..|+
T Consensus       120 ~~vlvlGa-Ggaarav~~~L~~~-G~~~i~v~nRt~--~ka~~la---~~~~~~~~~~~~--~------~~~DivInaTp  184 (271)
T 1npy_A          120 AKVIVHGS-GGMAKAVVAAFKNS-GFEKLKIYARNV--KTGQYLA---ALYGYAYINSLE--N------QQADILVNVTS  184 (271)
T ss_dssp             SCEEEECS-STTHHHHHHHHHHT-TCCCEEEECSCH--HHHHHHH---HHHTCEEESCCT--T------CCCSEEEECSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEeCCH--HHHHHHH---HHcCCccchhhh--c------ccCCEEEECCC
Confidence            57999998 99999999988754 553344666642  2233333   112222222222  2      36899998886


Q ss_pred             chhH-------HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          116 ASTV-------YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       116 p~~~-------~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      ....       ...-..++..+.-++ -.. +++.+- .|.+.|++.|..++=    .+++ |+.|.+.++
T Consensus       185 ~gm~~~~~~~~~~~~~~~l~~~~~v~-Dlv-Y~P~~T-~ll~~A~~~G~~~i~----Gl~M-Lv~Qa~~~f  247 (271)
T 1npy_A          185 IGMKGGKEEMDLAFPKAFIDNASVAF-DVV-AMPVET-PFIRYAQARGKQTIS----GAAV-IVLQAVEQF  247 (271)
T ss_dssp             TTCTTSTTTTSCSSCHHHHHHCSEEE-ECC-CSSSSC-HHHHHHHHTTCEEEC----HHHH-HHHHHHHHH
T ss_pred             CCccCccccCCCCCCHHHcCCCCEEE-Eee-cCCCCC-HHHHHHHHCCCEEEC----CHHH-HHHHHHHHH
Confidence            3321       111123455554333 221 222222 466777888877542    3343 445555444

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.13  E-value=0.75  Score=40.40  Aligned_cols=85  Identities=20%  Similarity=0.249  Sum_probs=52.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.....+.   +..+              .+.+.+.+.  ...+. +..|.+
T Consensus        30 k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~---~~~~--------------~~~~~~~~~--~~~~~~~~~D~~   89 (271)
T 4iin_A           30 KNVLITGASKGIGAEIAKTLAS-MGLKVWINYRSNA---EVAD--------------ALKNELEEK--GYKAAVIKFDAA   89 (271)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH---HHHH--------------HHHHHHHHT--TCCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCCH---HHHH--------------HHHHHHHhc--CCceEEEECCCC
Confidence            5799999999999999999885 5788775443221   1110              011111100  01222 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++.+|+-..|.
T Consensus        90 ~~~~v~~~~~~~~~~~g~id~li~nAg~  117 (271)
T 4iin_A           90 SESDFIEAIQTIVQSDGGLSYLVNNAGV  117 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            888888777766654  78898876653

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.08  E-value=1  Score=41.66  Aligned_cols=88  Identities=19%  Similarity=0.299  Sum_probs=53.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      ..|.|.|++|.+|+++++.+.+ .+.+++.+ +++.  .....+           ...++++.+++. .....   +..|
T Consensus        46 k~vlVTGas~GIG~aia~~La~-~Ga~Vvl~-~r~~--~~~~~l-----------~~~l~~~~~~~~-~~g~~~~~~~~D  109 (346)
T 3kvo_A           46 CTVFITGASRGIGKAIALKAAK-DGANIVIA-AKTA--QPHPKL-----------LGTIYTAAEEIE-AVGGKALPCIVD  109 (346)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEE-ESCC--SCCSSS-----------CCCHHHHHHHHH-HTTCEEEEEECC
T ss_pred             CEEEEeCCChHHHHHHHHHHHH-CCCEEEEE-ECCh--hhhhhh-----------HHHHHHHHHHHH-hcCCeEEEEEcc
Confidence            3689999999999999999885 57887654 4332  110000           011112111000 01222   3468


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .+.++.+.+.+..+.+.  ++++||=..|
T Consensus       110 v~d~~~v~~~~~~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          110 VRDEQQISAAVEKAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            89999888888877765  8999987655

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=93.06  E-value=0.33  Score=43.53  Aligned_cols=31  Identities=26%  Similarity=0.311  Sum_probs=26.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      ++|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~   34 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLE-KGYEVYGAD   34 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEE
Confidence            6899999999999999999886 478887653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=93.04  E-value=0.27  Score=43.89  Aligned_cols=80  Identities=21%  Similarity=0.257  Sum_probs=51.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.               +.+.     ..+. +..|.|
T Consensus        30 k~vlVTGas~gIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~-----~~~~~~~~Dv~   85 (277)
T 3gvc_A           30 KVAIVTGAGAGIGLAVARRLAD-EGCHVLC-ADIDG--DAADAAA---------------TKIG-----CGAAACRVDVS   85 (277)
T ss_dssp             CEEEETTTTSTHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHHH---------------HHHC-----SSCEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHcC-----CcceEEEecCC
Confidence            4688999999999999999885 5788765 44431  1111110               1111     1222 456888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++|+-..|
T Consensus        86 d~~~v~~~~~~~~~~~g~iD~lvnnAg  112 (277)
T 3gvc_A           86 DEQQIIAMVDACVAAFGGVDKLVANAG  112 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888888777766654  7888887655

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=92.96  E-value=0.16  Score=44.97  Aligned_cols=114  Identities=11%  Similarity=0.028  Sum_probs=63.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      +|||+|+|+ |+||..+++.+.+ .++++++ +++...-.++. ++.      +|. +.+.+++.++.....++ +|+|+
T Consensus         6 ~mkI~IIG~-G~~G~sLA~~L~~-~G~~V~~-~~~~~~~~~aD-ila------vP~-~ai~~vl~~l~~~l~~g~ivvd~   74 (232)
T 3dfu_A            6 RLRVGIFDD-GSSTVNMAEKLDS-VGHYVTV-LHAPEDIRDFE-LVV------IDA-HGVEGYVEKLSAFARRGQMFLHT   74 (232)
T ss_dssp             CCEEEEECC-SCCCSCHHHHHHH-TTCEEEE-CSSGGGGGGCS-EEE------ECS-SCHHHHHHHHHTTCCTTCEEEEC
T ss_pred             CcEEEEEee-CHHHHHHHHHHHH-CCCEEEE-ecCHHHhccCC-EEE------EcH-HHHHHHHHHHHHhcCCCCEEEEE
Confidence            479999997 9999999999875 4788776 44321001111 111      121 24455544332222344 78887


Q ss_pred             C--CchhHHHHHHHHHHcCCCEEEeCC---------CCCHHHHHHHHHHhhhCCCeEEEc
Q 022250          114 T--DASTVYDNVKQATAFGMRSVVYVP---------HIQLETVSALSAFCDKASMGCLIA  162 (300)
Q Consensus       114 T--~p~~~~~~~~~al~~G~~vVigTT---------G~~~e~~~~L~~~a~~~~i~iv~a  162 (300)
                      |  .+....   ..+.+.|..+|-+-|         +.+++..+.++++.+.-|..+++-
T Consensus        75 sgs~~~~vl---~~~~~~g~~fvg~HPm~g~~~~i~a~d~~a~~~l~~L~~~lG~~vv~~  131 (232)
T 3dfu_A           75 SLTHGITVM---DPLETSGGIVMSAHPIGQDRWVASALDELGETIVGLLVGELGGSIVEI  131 (232)
T ss_dssp             CSSCCGGGG---HHHHHTTCEEEEEEEEETTEEEEEESSHHHHHHHHHHHHHTTCEECCC
T ss_pred             CCcCHHHHH---HHHHhCCCcEEEeeeCCCCceeeeCCCHHHHHHHHHHHHHhCCEEEEe
Confidence            5  333333   333466765443211         225556778888888877555543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.93  E-value=0.16  Score=49.17  Aligned_cols=158  Identities=14%  Similarity=0.210  Sum_probs=81.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVV  110 (300)
                      .|||.|+|+ |++|+.+++.+. ..+.+++ ++|.+.  ..+..+.   ..+++.+.    ++.+-+.+.  .-.++|++
T Consensus         3 ~M~iiI~G~-G~vG~~la~~L~-~~~~~v~-vId~d~--~~~~~~~---~~~~~~~i~Gd~~~~~~L~~A--gi~~ad~~   72 (461)
T 4g65_A            3 AMKIIILGA-GQVGGTLAENLV-GENNDIT-IVDKDG--DRLRELQ---DKYDLRVVNGHASHPDVLHEA--GAQDADML   72 (461)
T ss_dssp             CEEEEEECC-SHHHHHHHHHTC-STTEEEE-EEESCH--HHHHHHH---HHSSCEEEESCTTCHHHHHHH--TTTTCSEE
T ss_pred             cCEEEEECC-CHHHHHHHHHHH-HCCCCEE-EEECCH--HHHHHHH---HhcCcEEEEEcCCCHHHHHhc--CCCcCCEE
Confidence            589999998 999999999876 4577766 677642  1122221   12344332    233322211  11468999


Q ss_pred             EEcCCchhH-HHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHHhh--hCCCeEEEcCCCcHHHHHHHHHHHHhcc-----
Q 022250          111 IDFTDASTV-YDNVKQATA-FGMRSVVYVPHIQLETVSALSAFCD--KASMGCLIAPTLSIGSILLQQAAISASF-----  181 (300)
Q Consensus       111 IDfT~p~~~-~~~~~~al~-~G~~vVigTTG~~~e~~~~L~~~a~--~~~i~iv~a~N~SiGv~ll~~~a~~~~~-----  181 (300)
                      |=.|.-+.. .-....|.+ ++.+-++.-. -+++..+..+.+-.  .-++-.+++|-....-.+...+..--+.     
T Consensus        73 ia~t~~De~Nl~~~~~Ak~~~~~~~~iar~-~~~~~~~~~~~l~~~~~~giD~iIsPe~~~a~~I~~~i~~p~~~~~~~f  151 (461)
T 4g65_A           73 VAVTNTDETNMAACQVAFTLFNTPNRIARI-RSPQYLAQKEALFKSGAIPVDHLIAPEELVTSYIERLIQYPGALQVVSF  151 (461)
T ss_dssp             EECCSCHHHHHHHHHHHHHHHCCSSEEEEC-CCHHHHTTHHHHTTTSSSCCSEEECHHHHHHHHHHHHHTSTTCSEEEEE
T ss_pred             EEEcCChHHHHHHHHHHHHhcCCccceeEe-ccchhhhhhhhhhhcccCCcceeecHHHHHHHHHHHhccCCCeEEEEEe
Confidence            877765543 223334434 3666555433 22332222233322  3456678877766665444333111000     


Q ss_pred             CCCCeEEEEccCCCCCCC-chHHH
Q 022250          182 HYKNVEIVESRPNARDFP-SPDAT  204 (300)
Q Consensus       182 ~~~dieIiE~Hh~K~DaP-SGTA~  204 (300)
                      ..-.++++|..- ..|+| .|+.+
T Consensus       152 ~~g~~~l~e~~v-~~~s~l~g~~l  174 (461)
T 4g65_A          152 AEEKVSLVAVKA-YYGGPLVGNAL  174 (461)
T ss_dssp             TTTTEEEEEEEC-CTTSSSTTCBH
T ss_pred             ccceEEEEEEEe-cCCCeecCCcH
Confidence            123577777642 22333 45544

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=92.93  E-value=0.22  Score=46.08  Aligned_cols=62  Identities=24%  Similarity=0.280  Sum_probs=43.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|+ |+||+.+++.+.. -++++++ +|+... ..+       ... + .+.++++++.      .+|+|+...
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~~-~d~~~~-~~~-------~~~-~-~~~~l~ell~------~aDvV~~~~  206 (331)
T 1xdw_A          146 NCTVGVVGL-GRIGRVAAQIFHG-MGATVIG-EDVFEI-KGI-------EDY-C-TQVSLDEVLE------KSDIITIHA  206 (331)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSCC-CSC-------TTT-C-EECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEEE-ECCCcc-HHH-------Hhc-c-ccCCHHHHHh------hCCEEEEec
Confidence            478999998 9999999998874 5888764 675431 111       111 2 2458999985      689999765


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       207 p  207 (331)
T 1xdw_A          207 P  207 (331)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.86  E-value=0.31  Score=44.74  Aligned_cols=31  Identities=32%  Similarity=0.301  Sum_probs=25.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      -+|.|+|++|.+|+.+++.+.. .+.++++..
T Consensus       171 ~~vlV~Ga~ggiG~~~~~~a~~-~Ga~V~~~~  201 (347)
T 2hcy_A          171 HWVAISGAAGGLGSLAVQYAKA-MGYRVLGID  201 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCcEEEEc
Confidence            4699999999999999998764 577877643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.84  E-value=0.23  Score=46.11  Aligned_cols=95  Identities=18%  Similarity=0.188  Sum_probs=54.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-ee---cCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VM---SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v~---~dl~~~l~~~~~~~~~DVVI  111 (300)
                      -+|.|+|++|.+|...++.++...+.+++++...+   ... +++   .++|.. +.   +++.+.+.+. ....+|+|+
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~---~~~-~~~---~~lGad~vi~~~~~~~~~v~~~-~~~g~Dvvi  244 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRP---ETQ-EWV---KSLGAHHVIDHSKPLAAEVAAL-GLGAPAFVF  244 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSH---HHH-HHH---HHTTCSEEECTTSCHHHHHHTT-CSCCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCH---HHH-HHH---HHcCCCEEEeCCCCHHHHHHHh-cCCCceEEE
Confidence            46999997799999999977654678887654321   111 111   122221 11   2344444321 123689999


Q ss_pred             EcCCchhHHHHHHHHHHc-CCCEEEeCC
Q 022250          112 DFTDASTVYDNVKQATAF-GMRSVVYVP  138 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~-G~~vVigTT  138 (300)
                      |++......+.+..+++. |.=+++|.+
T Consensus       245 d~~g~~~~~~~~~~~l~~~G~iv~~g~~  272 (363)
T 4dvj_A          245 STTHTDKHAAEIADLIAPQGRFCLIDDP  272 (363)
T ss_dssp             ECSCHHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             ECCCchhhHHHHHHHhcCCCEEEEECCC
Confidence            998765555555445444 444445544

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=92.84  E-value=0.73  Score=41.77  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=27.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      +++|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r   41 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQT-MGATVKGYSL   41 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCEEEEECCCchHHHHHHHHHHh-CCCeEEEEeC
Confidence            37899999999999999999886 4788887543

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=92.80  E-value=0.18  Score=46.19  Aligned_cols=72  Identities=15%  Similarity=0.236  Sum_probs=43.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCc-------EEEEEEecCC-----CCcchhhhhcCcCC--CCcceecCHHHHHh
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-------EVAGAIDSHS-----VGEDIGMVCDMEQP--LEIPVMSDLTMVLG   99 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-------eLvg~vd~~~-----~g~d~~~~~g~~~~--~gv~v~~dl~~~l~   99 (300)
                      ++|||.|+|++|.+|+.++..+.+. ++       +++. +|...     .|. +.++.....+  .++...+++.+++ 
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~-g~~~~~~~~ev~l-~D~~~~~~~~~g~-~~dl~~~~~~~~~di~~~~~~~~a~-   78 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAG-EMLGKDQPVILQL-LEIPQAMKALEGV-VMELEDCAFPLLAGLEATDDPKVAF-   78 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEE-ECCGGGHHHHHHH-HHHHHTTTCTTEEEEEEESCHHHHT-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC-CCCCCCCCCEEEE-EeCCCchhhccch-hhhhhcccccccCCeEeccChHHHh-
Confidence            4589999999999999999988764 43       6665 66531     010 1111110001  1233345777777 


Q ss_pred             cccccCCccEEEEcC
Q 022250          100 SISQSKARAVVIDFT  114 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT  114 (300)
                           .++|+||.+.
T Consensus        79 -----~~~D~Vih~A   88 (327)
T 1y7t_A           79 -----KDADYALLVG   88 (327)
T ss_dssp             -----TTCSEEEECC
T ss_pred             -----CCCCEEEECC
Confidence                 3789998764

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=92.79  E-value=0.9  Score=43.24  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEec
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDS   69 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~   69 (300)
                      .|.+|.|.|+||-+|+...+.+.+.|+ +++++....
T Consensus         8 ~~k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag   44 (406)
T 1q0q_A            8 GMKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   44 (406)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CceeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcC
Confidence            378999999999999999999998887 999998764

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=92.69  E-value=0.35  Score=45.44  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=28.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      +++|.|.|++|.+|+.+++.+. ..+.+++++...
T Consensus        69 ~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~R~  102 (427)
T 4f6c_A           69 LGNTLLTGATGFLGAYLIEALQ-GYSHRIYCFIRA  102 (427)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHT-TTEEEEEEEEEC
T ss_pred             CCEEEEecCCcHHHHHHHHHHH-cCCCEEEEEECC
Confidence            5799999999999999999985 567888876543

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=92.63  E-value=0.11  Score=47.87  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=25.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      |||+|+|+ |.||..++..+...+-. +| ..+|.+
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el-~l~D~~   34 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEV-VMVDIK   34 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEE-EEECSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEE-EEEeCc
Confidence            68999998 99999999988765433 54 457754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=92.62  E-value=0.49  Score=41.16  Aligned_cols=37  Identities=14%  Similarity=0.255  Sum_probs=27.7

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .+|..+|.|.|++|.+|+.+++.+.+ .+.+++. ++++
T Consensus        19 ~~m~k~vlITGas~gIG~~la~~l~~-~G~~V~~-~~r~   55 (251)
T 3orf_A           19 SHMSKNILVLGGSGALGAEVVKFFKS-KSWNTIS-IDFR   55 (251)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESS
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeCC
Confidence            35667899999999999999999885 5788665 4443

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.59  E-value=0.93  Score=39.84  Aligned_cols=85  Identities=14%  Similarity=0.211  Sum_probs=49.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ....++.              +++-.. ....... +..|.+
T Consensus        33 k~vlVTGasggIG~~la~~l~~-~G~~V~~~-~r~~--~~~~~~~--------------~~~~~~-~~~~~~~~~~~Dl~   93 (279)
T 1xg5_A           33 RLALVTGASGGIGAAVARALVQ-QGLKVVGC-ARTV--GNIEELA--------------AECKSA-GYPGTLIPYRCDLS   93 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEE-ESCH--HHHHHHH--------------HHHHHT-TCSSEEEEEECCTT
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEE-ECCh--HHHHHHH--------------HHHHhc-CCCceEEEEEecCC
Confidence            5699999999999999999886 57887654 4331  1111110              111100 0000112 335788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++.+.+.+..+.+.  ++++|+-..|
T Consensus        94 ~~~~v~~~~~~~~~~~g~iD~vi~~Ag  120 (279)
T 1xg5_A           94 NEEDILSMFSAIRSQHSGVDICINNAG  120 (279)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            888777766655443  6888887665

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.57  E-value=0.5  Score=41.88  Aligned_cols=105  Identities=14%  Similarity=0.152  Sum_probs=53.2

Q ss_pred             cCcccccccceeeEeecCCC-CC-cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce
Q 022250           13 HHISQNVKAKRFISCSTNPP-QS-NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (300)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~-~~-~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v   90 (300)
                      ||++-+-+.+--..|+.+.+ ++ ..++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+.           
T Consensus         2 ~~~~~~~~~~~~~~m~~~~~~~l~gk~~lVTGas~gIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~-----------   66 (271)
T 4ibo_A            2 HHHHHSSGLVPRGSMSNQIIFDLGGRTALVTGSSRGLGRAMAEGLAV-AGARILI-NGTDP--SRVAQT-----------   66 (271)
T ss_dssp             ----------------CCGGGCCTTCEEEETTCSSHHHHHHHHHHHH-TTCEEEE-CCSCH--HHHHHH-----------
T ss_pred             CCCCCCCCCCCcccCccccccCCCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH-----------
Confidence            44555555555555555432 12 25689999999999999999885 5777654 34321  111111           


Q ss_pred             ecCHHHHHhcccccCCcc---EEEEcCCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250           91 MSDLTMVLGSISQSKARA---VVIDFTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus        91 ~~dl~~~l~~~~~~~~~D---VVIDfT~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                         .+++-+     ...+   +..|.+.++...+.+..+.+.  ++++|+-..|.
T Consensus        67 ---~~~l~~-----~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~  113 (271)
T 4ibo_A           67 ---VQEFRN-----VGHDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNAGI  113 (271)
T ss_dssp             ---HHHHHH-----TTCCEEECCCCTTCHHHHHHHHHHHHHHTCCCCEEEECCCC
T ss_pred             ---HHHHHh-----cCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence               111111     1222   235788888887777766654  58888876653

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=92.56  E-value=1.2  Score=38.30  Aligned_cols=84  Identities=21%  Similarity=0.266  Sum_probs=52.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++.+.   ..... +..|.+
T Consensus        10 k~vlITGas~giG~~~a~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D~~   68 (253)
T 3qiv_A           10 KVGIVTGSGGGIGQAYAEALAR-EGAAVVV-ADINA--EAAEAVA--------------KQIVAD---GGTAISVAVDVS   68 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCEEEEEECCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEE-EcCCH--HHHHHHH--------------HHHHhc---CCcEEEEEccCC
Confidence            5689999999999999999885 5788665 45432  1111110              111110   01111 346788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        69 ~~~~~~~~~~~~~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           69 DPESAKAMADRTLAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            888887777766654  78999877664

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=92.43  E-value=0.48  Score=42.57  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=26.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~-~G~~V~~~   30 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVIIL   30 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            4899999999999999999885 57888764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=92.38  E-value=1.2  Score=39.92  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=53.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++-..   ...+. +..|.|
T Consensus        32 k~vlVTGas~gIG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv~   90 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFAR-RGARLVL-SDVDQ--PALEQAV--------------NGLRGQ---GFDAHGVVCDVR   90 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCceEEEEccCC
Confidence            4699999999999999999885 5788665 44431  1111110              111110   01222 456889


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++.+|+-..|.
T Consensus        91 d~~~v~~~~~~~~~~~g~id~lvnnAg~  118 (301)
T 3tjr_A           91 HLDEMVRLADEAFRLLGGVDVVFSNAGI  118 (301)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence            998888888777665  78999877663

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=92.37  E-value=0.91  Score=39.88  Aligned_cols=85  Identities=19%  Similarity=0.231  Sum_probs=52.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      ..+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++-+.   ..+.. +..|.
T Consensus        31 ~k~vlITGasggIG~~la~~L~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dl   89 (272)
T 1yb1_A           31 GEIVLITGAGHGIGRLTAYEFAK-LKSKLVL-WDINK--HGLEETA--------------AKCKGL---GAKVHTFVVDC   89 (272)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCT
T ss_pred             CCEEEEECCCchHHHHHHHHHHH-CCCEEEE-EEcCH--HHHHHHH--------------HHHHhc---CCeEEEEEeeC
Confidence            36799999999999999999886 4788665 44431  1111110              111110   01222 34678


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      +.++...+.+..+.+.  ++.+||-..|.
T Consensus        90 ~~~~~v~~~~~~~~~~~g~iD~li~~Ag~  118 (272)
T 1yb1_A           90 SNREDIYSSAKKVKAEIGDVSILVNNAGV  118 (272)
T ss_dssp             TCHHHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCcEEEECCCc
Confidence            8888877777665553  68888877653

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=92.29  E-value=0.17  Score=49.03  Aligned_cols=35  Identities=14%  Similarity=0.130  Sum_probs=29.2

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .|++|.|.|+||.+|+.+++.+. ..+.++++....
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~-~~g~~V~~l~R~  183 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQ-GYSHRIYCFIRA  183 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTB-TTEEEEEEEEES
T ss_pred             CCCeEEEECCccchHHHHHHHHH-hcCCEEEEEECC
Confidence            36899999999999999999984 568888877543

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=92.23  E-value=0.55  Score=40.79  Aligned_cols=85  Identities=13%  Similarity=0.130  Sum_probs=52.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC--cEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG--MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~--~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVI  111 (300)
                      +.+|.|.|++|.+|+.+++.+.+...  .+++.+ +++..  ...               .++++...   ..... +..
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~-~r~~~--~~~---------------~~~~l~~~---~~~~~~~~~   79 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTT-CRNRE--QAK---------------ELEDLAKN---HSNIHILEI   79 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEE-ESCTT--SCH---------------HHHHHHHH---CTTEEEEEC
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEE-ecChh--hhH---------------HHHHhhcc---CCceEEEEe
Confidence            46799999999999999999986432  777754 43320  000               01122110   01222 346


Q ss_pred             EcCCchhHHHHHHHHHHc----CCCEEEeCCCC
Q 022250          112 DFTDASTVYDNVKQATAF----GMRSVVYVPHI  140 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~----G~~vVigTTG~  140 (300)
                      |++.++...+.+..+.+.    ++.+|+-..|.
T Consensus        80 Dl~~~~~v~~~~~~~~~~~g~~~id~li~~Ag~  112 (267)
T 1sny_A           80 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGI  112 (267)
T ss_dssp             CTTCGGGHHHHHHHHHHHHGGGCCSEEEECCCC
T ss_pred             cCCChHHHHHHHHHHHHhcCCCCccEEEECCCc
Confidence            788888887777655543    68999877653

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=92.22  E-value=0.099  Score=47.92  Aligned_cols=34  Identities=29%  Similarity=0.310  Sum_probs=25.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |||+|+|++|.+|+.++..+....-..-+..+|.
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di   34 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcC
Confidence            5899999999999999998876533222345675

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=92.20  E-value=0.73  Score=40.05  Aligned_cols=86  Identities=13%  Similarity=0.144  Sum_probs=54.5

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVID  112 (300)
                      +|.++.|.|++|.+|+.+++.+.+ .+.+++....++.   +..+              .+.+.+.+.  ...+. +..|
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~-~G~~v~~~~~~~~---~~~~--------------~~~~~~~~~--~~~~~~~~~D   65 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLA-KGYSVTVTYHSDT---TAME--------------TMKETYKDV--EERLQFVQAD   65 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH---HHHH--------------HHHHHTGGG--GGGEEEEECC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHH-CCCEEEEEcCCCh---HHHH--------------HHHHHHHhc--CCceEEEEec
Confidence            346799999999999999999885 5788876544321   1100              011111100  01222 3568


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .+.++...+.+..+.+.  ++++|+=..|
T Consensus        66 l~~~~~v~~~~~~~~~~~g~id~lv~~Ag   94 (264)
T 3i4f_A           66 VTKKEDLHKIVEEAMSHFGKIDFLINNAG   94 (264)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            89888888877777665  7899987666

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=92.16  E-value=0.16  Score=48.17  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=42.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|. |+||+.+++.+.. -++++++ +|+..  .. .   +    .+. .+.++++++.      .+|+|+-..
T Consensus       116 g~tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~--~~-~---~----~g~-~~~~l~ell~------~aDvV~l~~  175 (380)
T 2o4c_A          116 ERTYGVVGA-GQVGGRLVEVLRG-LGWKVLV-CDPPR--QA-R---E----PDG-EFVSLERLLA------EADVISLHT  175 (380)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECHHH--HH-H---S----TTS-CCCCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHH-CCCEEEE-EcCCh--hh-h---c----cCc-ccCCHHHHHH------hCCEEEEec
Confidence            368999997 9999999998874 5888765 66531  00 0   0    122 2468889885      689988765


Q ss_pred             C
Q 022250          115 D  115 (300)
Q Consensus       115 ~  115 (300)
                      +
T Consensus       176 P  176 (380)
T 2o4c_A          176 P  176 (380)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.11  E-value=0.19  Score=45.86  Aligned_cols=32  Identities=13%  Similarity=0.110  Sum_probs=25.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      -+|.|+|++|.+|...++.+.. .+.++++...
T Consensus       150 ~~vlV~Ga~g~iG~~~~~~a~~-~Ga~Vi~~~~  181 (334)
T 3qwb_A          150 DYVLLFAAAGGVGLILNQLLKM-KGAHTIAVAS  181 (334)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeC
Confidence            4799999889999999997764 6788776543

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=92.09  E-value=0.48  Score=47.91  Aligned_cols=97  Identities=14%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh--------h-hhcCcCCCCccee-cC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG--------M-VCDMEQPLEIPVM-SD   93 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~~--------~-~~g~~~~~gv~v~-~d   93 (300)
                      .||.|+|+ |.+|..+++.+.. .|+-=+.++|.+.     .+       .|+|        + +..+.+...+..+ ..
T Consensus        18 s~VlVVGa-GGLGsevak~La~-aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~   95 (640)
T 1y8q_B           18 GRVLVVGA-GGIGCELLKNLVL-TGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS   95 (640)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESC
T ss_pred             CeEEEECc-CHHHHHHHHHHHH-cCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence            68999999 9999999999885 4665556777421     01       1111        0 0111011112111 11


Q ss_pred             H------HHHHhcccccCCccEEEEcCC-chhHHHHHHHHHHcCCCEEEe-CCCC
Q 022250           94 L------TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY-VPHI  140 (300)
Q Consensus        94 l------~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVig-TTG~  140 (300)
                      +      ++.+      ..+|+|||++. +++-...-..|.++++|+|.+ +.|+
T Consensus        96 i~~~~~~~~~~------~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~  144 (640)
T 1y8q_B           96 IMNPDYNVEFF------RQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGY  144 (640)
T ss_dssp             TTSTTSCHHHH------TTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             cchhhhhHhhh------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecc
Confidence            1      2444      47899999874 454455667889999999955 3354

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=92.08  E-value=0.85  Score=44.38  Aligned_cols=173  Identities=12%  Similarity=0.147  Sum_probs=83.8

Q ss_pred             ccccccceeeEeecCCCCC-cceEEEEcCCchH-HHHHHHHHHhc-CCc--EEEEEEecCCC---C-cchh-hh-hcCcC
Q 022250           16 SQNVKAKRFISCSTNPPQS-NIKVIINGAVKEI-GRAAVIAVTKA-RGM--EVAGAIDSHSV---G-EDIG-MV-CDMEQ   84 (300)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~-~ikV~V~Ga~GrM-G~~i~~~i~~~-~~~--eLvg~vd~~~~---g-~d~~-~~-~g~~~   84 (300)
                      |-.--|.+.--|+.  |.| ++||+|+|+ |.. |..++..+... +++  .=+..+|.+..   + .+.. .+ .+...
T Consensus        10 ~~~~~~~~~~~~~~--m~m~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~   86 (472)
T 1u8x_X           10 GVDLGTENLYFQSN--MKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAP   86 (472)
T ss_dssp             ------------------CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCT
T ss_pred             ccccCccceeeccc--cccCCCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCC
Confidence            34445666777766  222 369999998 776 66677666654 233  22446775320   0 0111 11 11112


Q ss_pred             CCCcceecCHHHHHhcccccCCccEEEEcCCchhHHHH---HHHHHHcCCCEEEeCCC---CC---------HHHHHHHH
Q 022250           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDN---VKQATAFGMRSVVYVPH---IQ---------LETVSALS  149 (300)
Q Consensus        85 ~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~---~~~al~~G~~vVigTTG---~~---------~e~~~~L~  149 (300)
                      +..+..++|+++++      .++|+||...........   -+..+++|+-- =.|+|   +.         .+-.+.+.
T Consensus        87 ~~~I~~t~D~~eal------~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~-~eT~G~ggl~~~~rni~i~~~i~~~i~  159 (472)
T 1u8x_X           87 DIEFAATTDPEEAF------TDVDFVMAHIRVGKYAMRALDEQIPLKYGVVG-QETCGPGGIAYGMRSIGGVLEILDYME  159 (472)
T ss_dssp             TSEEEEESCHHHHH------SSCSEEEECCCTTHHHHHHHHHHHHHTTTCCC-CSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCHHHHH------cCCCEEEEcCCCccccccchhhhhhhhcCccc-ccccCchhHHHHhhhHHHHHHHHHHHH
Confidence            33455568998887      489999965543332221   23456777753 23332   21         12234455


Q ss_pred             HHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEccCCCCCCCchHHHHHHHHH
Q 022250          150 AFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNL  210 (300)
Q Consensus       150 ~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~Hh~K~DaPSGTA~~l~~~i  210 (300)
                      +.|-+   .+++  |+|=-+.++.++++...   +...++=.    -+.|+++...+++.+
T Consensus       160 ~~~P~---A~ii--~~TNPvdi~T~~~~k~~---p~~rViG~----c~~~~r~~~~la~~l  208 (472)
T 1u8x_X          160 KYSPD---AWML--NYSNPAAIVAEATRRLR---PNSKILNI----CDMPVGIEDRMAQIL  208 (472)
T ss_dssp             HHCTT---CEEE--ECCSCHHHHHHHHHHHS---TTCCEEEC----CSHHHHHHHHHHHHH
T ss_pred             HHCCC---eEEE--EeCCcHHHHHHHHHHhC---CCCCEEEe----CCcHHHHHHHHHHHh
Confidence            55533   3444  66666677777776654   34445555    234567777777765

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=92.06  E-value=0.16  Score=47.02  Aligned_cols=75  Identities=16%  Similarity=0.111  Sum_probs=42.4

Q ss_pred             CCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC--C-CcchhhhhcCc-CCCCcceecCHHHHHhcccccCCc
Q 022250           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--V-GEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~-g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~  107 (300)
                      .+.++||+|+|+ |.+|..++-.+...+-+.=+..+|...  . |. +.++.... ....+.++.+..+.+      .++
T Consensus         6 ~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~-~~dl~~~~~~~~~~~i~~~~~~a~------~~a   77 (326)
T 2zqz_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGD-AIDLSNALPFTSPKKIYSAEYSDA------KDA   77 (326)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH-HHHHHTTGGGSCCCEEEECCGGGG------GGC
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHH-HHHHHHHHHhcCCeEEEECCHHHh------CCC
Confidence            345689999998 999999998887655332234567532  0 10 11121110 002334443444555      478


Q ss_pred             cEEEEcC
Q 022250          108 AVVIDFT  114 (300)
Q Consensus       108 DVVIDfT  114 (300)
                      |+||...
T Consensus        78 DvVii~a   84 (326)
T 2zqz_A           78 DLVVITA   84 (326)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9998654

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=92.00  E-value=1  Score=38.86  Aligned_cols=84  Identities=20%  Similarity=0.297  Sum_probs=52.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVI  111 (300)
                      ..++.|.|++|.+|+.+++.+.+ .+.+++.....+.  ....++               .+.+.+    ...+   +..
T Consensus         4 ~k~~lVTGas~gIG~~ia~~l~~-~G~~V~~~~~~~~--~~~~~~---------------~~~~~~----~~~~~~~~~~   61 (246)
T 3osu_A            4 TKSALVTGASRGIGRSIALQLAE-EGYNVAVNYAGSK--EKAEAV---------------VEEIKA----KGVDSFAIQA   61 (246)
T ss_dssp             SCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----TTSCEEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH---------------HHHHHh----cCCcEEEEEc
Confidence            35689999999999999999885 5788765433221  111111               111110    1222   345


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          112 DFTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      |.+.++...+.+..+.+.  ++++|+-..|.
T Consensus        62 Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg~   92 (246)
T 3osu_A           62 NVADADEVKAMIKEVVSQFGSLDVLVNNAGI   92 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            788888887777766655  78888876653

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.98  E-value=0.8  Score=40.13  Aligned_cols=84  Identities=21%  Similarity=0.213  Sum_probs=52.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  .+..+..              +++-+.  ...++. +..|.|
T Consensus        11 k~vlVTGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~--~~~~~~~~~~Dv~   70 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFAR-AGANVAV-AGRST--ADIDACV--------------ADLDQL--GSGKVIGVQTDVS   70 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHTT--SSSCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhh--CCCcEEEEEcCCC
Confidence            5789999999999999999885 5777765 44432  1111110              111110  001122 355888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++|+=.-|
T Consensus        71 ~~~~v~~~~~~~~~~~g~id~lvnnAg   97 (262)
T 3pk0_A           71 DRAQCDALAGRAVEEFGGIDVVCANAG   97 (262)
T ss_dssp             SHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            888888877766665  7888887655

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=91.97  E-value=0.31  Score=44.96  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=25.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      ++||+|+|+ |.||..++..+... ++ +|+ .+|.+
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~-~~~~v~-l~Di~   38 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIK-QLGDVV-LFDIA   38 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCEEE-EECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCceEE-EEeCC
Confidence            479999997 99999999988754 44 644 57754

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=91.97  E-value=0.13  Score=47.36  Aligned_cols=98  Identities=15%  Similarity=0.081  Sum_probs=54.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      -+|.|+|++|.+|...++.+. ..+.++++. .++.. .+...-.|.  .. +....++.+.+.+......+|+++|++.
T Consensus       152 ~~VlV~Ga~g~iG~~~~q~a~-~~Ga~Vi~~-~~~~~-~~~~~~lGa--~~-i~~~~~~~~~~~~~~~~~g~D~vid~~g  225 (343)
T 3gaz_A          152 QTVLIQGGGGGVGHVAIQIAL-ARGARVFAT-ARGSD-LEYVRDLGA--TP-IDASREPEDYAAEHTAGQGFDLVYDTLG  225 (343)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEE-ECHHH-HHHHHHHTS--EE-EETTSCHHHHHHHHHTTSCEEEEEESSC
T ss_pred             CEEEEecCCCHHHHHHHHHHH-HCCCEEEEE-eCHHH-HHHHHHcCC--CE-eccCCCHHHHHHHHhcCCCceEEEECCC
Confidence            469999988999999999776 568898887 43210 111111121  11 2112334443321111236899999987


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCC
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      .+.....+......|.=+++|..+
T Consensus       226 ~~~~~~~~~~l~~~G~iv~~g~~~  249 (343)
T 3gaz_A          226 GPVLDASFSAVKRFGHVVSCLGWG  249 (343)
T ss_dssp             THHHHHHHHHEEEEEEEEESCCCS
T ss_pred             cHHHHHHHHHHhcCCeEEEEcccC
Confidence            654444444444455555566543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=91.91  E-value=0.57  Score=40.66  Aligned_cols=81  Identities=23%  Similarity=0.240  Sum_probs=53.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.               +.+.     ... -+..|.+
T Consensus        10 k~vlITGas~gIG~~~a~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~-----~~~~~~~~D~~   65 (261)
T 3n74_A           10 KVALITGAGSGFGEGMAKRFAK-GGAKVVI-VDRDK--AGAERVA---------------GEIG-----DAALAVAADIS   65 (261)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH---------------HHHC-----TTEEEEECCTT
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EcCCH--HHHHHHH---------------HHhC-----CceEEEEecCC
Confidence            5799999999999999999885 5788665 45432  1111111               1111     122 2456888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        66 ~~~~~~~~~~~~~~~~g~id~li~~Ag~   93 (261)
T 3n74_A           66 KEADVDAAVEAALSKFGKVDILVNNAGI   93 (261)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence            888888877777665  78899877653

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=91.89  E-value=0.67  Score=41.30  Aligned_cols=83  Identities=20%  Similarity=0.302  Sum_probs=51.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      ..+.|.|++|.+|+.+++.+.+ .+..++. ++++.  ....++.              +++.+.   ...+. +..|.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv~   87 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAA-DGVTVGA-LGRTR--TEVEEVA--------------DEIVGA---GGQAIALEADVS   87 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHHH--------------HHHTTT---TCCEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhc---CCcEEEEEccCC
Confidence            4688999999999999999885 5777765 44431  1111110              111100   01111 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++|+-..|
T Consensus        88 d~~~v~~~~~~~~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A           88 DELQMRNAVRDLVLKFGHLDIVVANAG  114 (283)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            888888877776654  7888886554

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=91.75  E-value=1.3  Score=38.64  Aligned_cols=84  Identities=11%  Similarity=0.131  Sum_probs=53.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++...+++.  ....+.               .+.+.+  ....+. +..|.|
T Consensus         5 k~vlVTGas~gIG~aia~~l~~-~G~~vv~~~~r~~--~~~~~~---------------~~~~~~--~~~~~~~~~~Dv~   64 (258)
T 3oid_A            5 KCALVTGSSRGVGKAAAIRLAE-NGYNIVINYARSK--KAALET---------------AEEIEK--LGVKVLVVKANVG   64 (258)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHT--TTCCEEEEECCTT
T ss_pred             CEEEEecCCchHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHH---------------HHHHHh--cCCcEEEEEcCCC
Confidence            4689999999999999999885 5888876555432  111111               111110  001222 345888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++|+=.-|
T Consensus        65 ~~~~v~~~~~~~~~~~g~id~lv~nAg   91 (258)
T 3oid_A           65 QPAKIKEMFQQIDETFGRLDVFVNNAA   91 (258)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888888887776654  6888886654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=91.75  E-value=0.12  Score=47.49  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=26.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      -+|.|+|++|.+|...++.+.. .+.++++...
T Consensus       161 ~~VlV~Gasg~iG~~~~~~a~~-~Ga~Vi~~~~  192 (342)
T 4eye_A          161 ETVLVLGAAGGIGTAAIQIAKG-MGAKVIAVVN  192 (342)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-cCCEEEEEeC
Confidence            4699999999999999997764 5788876554

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=91.72  E-value=0.69  Score=40.75  Aligned_cols=81  Identities=20%  Similarity=0.204  Sum_probs=53.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+..               +.+.     ... -+..|.|
T Consensus        12 k~vlVTGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~-----~~~~~~~~Dv~   67 (271)
T 3tzq_B           12 KVAIITGACGGIGLETSRVLAR-AGARVVL-ADLPE--TDLAGAA---------------ASVG-----RGAVHHVVDLT   67 (271)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EECTT--SCHHHHH---------------HHHC-----TTCEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EcCCH--HHHHHHH---------------HHhC-----CCeEEEECCCC
Confidence            4689999999999999999885 5787664 45432  1111110               1111     122 2456889


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        68 ~~~~v~~~~~~~~~~~g~id~lv~nAg~   95 (271)
T 3tzq_B           68 NEVSVRALIDFTIDTFGRLDIVDNNAAH   95 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            888888877776665  78898876653

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.70  E-value=0.29  Score=44.26  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=26.1

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSH   70 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~   70 (300)
                      ++|||+|+|+ |.||..++..+... +.  +++ .+|++
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~-g~~~~V~-l~d~~   41 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQR-GIAREIV-LEDIA   41 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHT-TCCSEEE-EECSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCCCEEE-EEeCC
Confidence            3579999998 99999999988754 55  665 56654

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=91.57  E-value=0.24  Score=47.02  Aligned_cols=59  Identities=14%  Similarity=0.082  Sum_probs=39.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .+|+|+|. |+||+.+++.+.. -++++.+ +|+..  ...        . ....+.+++++++      .+|+|+-.+
T Consensus       120 ktvGIIGl-G~IG~~vA~~l~a-~G~~V~~-~d~~~--~~~--------~-~~~~~~sl~ell~------~aDiV~l~~  178 (381)
T 3oet_A          120 RTIGIVGV-GNVGSRLQTRLEA-LGIRTLL-CDPPR--AAR--------G-DEGDFRTLDELVQ------EADVLTFHT  178 (381)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECHHH--HHT--------T-CCSCBCCHHHHHH------HCSEEEECC
T ss_pred             CEEEEEeE-CHHHHHHHHHHHH-CCCEEEE-ECCCh--HHh--------c-cCcccCCHHHHHh------hCCEEEEcC
Confidence            68999998 9999999998874 5888775 56421  000        0 1112457777774      577777554

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=91.47  E-value=0.46  Score=40.60  Aligned_cols=85  Identities=19%  Similarity=0.199  Sum_probs=50.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+..              +++...  ....+. +..|.+
T Consensus         3 k~vlITGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~--~~~~~~~~~~D~~   62 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALAR-DGYALAL-GARSV--DRLEKIA--------------HELMQE--QGVEVFYHHLDVS   62 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHH--HCCCEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhh--cCCeEEEEEeccC
Confidence            4689999999999999999885 5777654 44431  1111110              111100  001222 235788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        63 ~~~~v~~~~~~~~~~~g~id~li~~Ag~   90 (235)
T 3l77_A           63 KAESVEEFSKKVLERFGDVDVVVANAGL   90 (235)
T ss_dssp             CHHHHHHHCC-HHHHHSSCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence            888877777666554  68888876653

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=91.42  E-value=0.22  Score=41.43  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=26.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      ||||.|.|++|.+|+.+++.+.  .+.+++.+
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~--~g~~V~~~   32 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE--KKAEVITA   32 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT--TTSEEEEE
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH--CCCeEEEE
Confidence            4689999999999999999987  58887764

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=91.42  E-value=1.6  Score=38.56  Aligned_cols=82  Identities=18%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++-+     ...+   +..|
T Consensus         5 k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~-----~~~~~~~~~~D   61 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGV-AGAKILL-GARRQ--ARIEAIA--------------TEIRD-----AGGTALAQVLD   61 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHHH--------------HHHHH-----TTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEcC
Confidence            5689999999999999999885 5788765 44431  1111110              11111     1222   3468


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .|.++...+.+..+.+.  ++.+||=.-|.
T Consensus        62 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~   91 (264)
T 3tfo_A           62 VTDRHSVAAFAQAAVDTWGRIDVLVNNAGV   91 (264)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            89999888888777665  78999876653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=91.41  E-value=2  Score=38.06  Aligned_cols=89  Identities=20%  Similarity=0.225  Sum_probs=53.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhccccc-CCcc-EEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS-KARA-VVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~-~~~D-VVIDf  113 (300)
                      ..+.|.|++|.+|+.+++.+.+ .+..++. ++++.  .+..++           ...++++.+++... ..+. +..|.
T Consensus        10 k~vlVTGas~GIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~Dv   74 (285)
T 3sc4_A           10 KTMFISGGSRGIGLAIAKRVAA-DGANVAL-VAKSA--EPHPKL-----------PGTIYTAAKEIEEAGGQALPIVGDI   74 (285)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHT-TTCEEEE-EESCC--SCCSSS-----------CCCHHHHHHHHHHHTSEEEEEECCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EECCh--hhhhhh-----------hHHHHHHHHHHHhcCCcEEEEECCC
Confidence            4689999999999999999885 5788765 44432  110000           01112221110000 1122 34588


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      |.++...+.+..+.+.  +++++|-..|
T Consensus        75 ~~~~~v~~~~~~~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           75 RDGDAVAAAVAKTVEQFGGIDICVNNAS  102 (285)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            9999888888777665  7899987665

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.40  E-value=0.15  Score=46.25  Aligned_cols=31  Identities=16%  Similarity=0.266  Sum_probs=25.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      -+|.|+|++|.+|+.+++.+.. .+.++++..
T Consensus       142 ~~vlV~Ga~ggiG~~~~~~a~~-~G~~V~~~~  172 (327)
T 1qor_A          142 EQFLFHAAAGGVGLIACQWAKA-LGAKLIGTV  172 (327)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-cCCEEEEEe
Confidence            4799999889999999998775 467877643

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}

Probab=91.37  E-value=0.25  Score=47.41  Aligned_cols=115  Identities=10%  Similarity=0.071  Sum_probs=60.3

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -++|||.|+|. |.-..+++..+.++++++-+-+.. ...|...  ..   ....+ -+.|++.+++- .+..++|+|+-
T Consensus        19 p~~m~ilvlG~-ggre~ala~~l~~s~~v~~v~~~p-gn~g~~~--~~---~~~~i-~~~d~~~l~~~-a~~~~id~vv~   89 (442)
T 3lp8_A           19 PGSMNVLVIGS-GGREHSMLHHIRKSTLLNKLFIAP-GREGMSG--LA---DIIDI-DINSTIEVIQV-CKKEKIELVVI   89 (442)
T ss_dssp             -CCEEEEEEEC-SHHHHHHHHHHTTCTTEEEEEEEE-CCGGGTT--TS---EECCC-CTTCHHHHHHH-HHHTTCCEEEE
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHhCCCCCEEEEEC-CChHHhh--cc---ceeec-CcCCHHHHHHH-HHHhCCCEEEE
Confidence            35799999997 744566788888888765444432 2211110  00   00111 13466665432 22357898773


Q ss_pred             cCCchhHH--HHHHHHHHcCCCEEEeCC--CCC-HHHHHHHHHHhhhCCCeE
Q 022250          113 FTDASTVY--DNVKQATAFGMRSVVYVP--HIQ-LETVSALSAFCDKASMGC  159 (300)
Q Consensus       113 fT~p~~~~--~~~~~al~~G~~vVigTT--G~~-~e~~~~L~~~a~~~~i~i  159 (300)
                        .|+...  ..+..+.+.|++++ |.+  ... .......++++++.|+|+
T Consensus        90 --g~E~~l~~~~~~~l~~~Gi~~~-Gp~~~a~~~~~dK~~~k~~l~~~GIp~  138 (442)
T 3lp8_A           90 --GPETPLMNGLSDALTEEGILVF-GPSKAAARLESSKGFTKELCMRYGIPT  138 (442)
T ss_dssp             --CSHHHHHTTHHHHHHHTTCEEE-SCCHHHHHHHHCHHHHHHHHHHHTCCB
T ss_pred             --CCcHHHHHHHHHHHHhcCCcEe-cCCHHHHHHhhCHHHHHHHHHHCCCCC
Confidence              244332  45566667888877 432  111 112233556667777764

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=91.32  E-value=0.69  Score=40.99  Aligned_cols=82  Identities=11%  Similarity=0.109  Sum_probs=49.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+.               .+.+.+   ..++. +..|.+
T Consensus        30 k~vlVTGas~gIG~aia~~L~~-~G~~V~~-~~r~~--~~~~~~---------------~~~l~~---~~~~~~~~~Dv~   87 (276)
T 2b4q_A           30 RIALVTGGSRGIGQMIAQGLLE-AGARVFI-CARDA--EACADT---------------ATRLSA---YGDCQAIPADLS   87 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHH---------------HHHHTT---SSCEEECCCCTT
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHHHh---cCceEEEEeeCC
Confidence            4699999999999999999885 5788664 44431  111110               011110   01111 234778


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++.+|+-..|
T Consensus        88 d~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (276)
T 2b4q_A           88 SEAGARRLAQALGELSARLDILVNNAG  114 (276)
T ss_dssp             SHHHHHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            888777777666553  6888887655

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=91.32  E-value=1.9  Score=37.31  Aligned_cols=84  Identities=24%  Similarity=0.332  Sum_probs=51.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      ..++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++-..   ...+. +..|.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~D~   60 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVK-DGFAVAI-ADYND--ATAKAVA--------------SEINQA---GGHAVAVKVDV   60 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCT
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHhc---CCcEEEEEecC
Confidence            35689999999999999999885 5788765 44431  1111110              111100   01122 34578


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      +.++...+.+..+.+.  ++++|+-..|
T Consensus        61 ~~~~~v~~~~~~~~~~~g~id~lv~nAg   88 (256)
T 1geg_A           61 SDRDQVFAAVEQARKTLGGFDVIVNNAG   88 (256)
T ss_dssp             TSHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            8888887777766554  6888887665

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.31  E-value=1.3  Score=38.77  Aligned_cols=92  Identities=14%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             cCCCCC--cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCC
Q 022250           29 TNPPQS--NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        29 ~~~~~~--~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      ..|.+|  ...+.|.|++|.+|+.+++.+.+ .+..++....+..  ......              .++....   ...
T Consensus        17 ~~p~~~~~~k~vlITGas~gIG~~~a~~l~~-~G~~v~~~~~~~~--~~~~~~--------------~~~~~~~---~~~   76 (269)
T 3gk3_A           17 QGPGSMQAKRVAFVTGGMGGLGAAISRRLHD-AGMAVAVSHSERN--DHVSTW--------------LMHERDA---GRD   76 (269)
T ss_dssp             -------CCCEEEETTTTSHHHHHHHHHHHT-TTCEEEEEECSCH--HHHHHH--------------HHHHHTT---TCC
T ss_pred             CCchhhhcCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCch--HHHHHH--------------HHHHHhc---CCc
Confidence            344443  24578899999999999999885 5788765432221  111110              0111100   012


Q ss_pred             cc-EEEEcCCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          107 RA-VVIDFTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       107 ~D-VVIDfT~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      +. +..|++.++.+.+.+..+.+.  ++++||-..|.
T Consensus        77 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~  113 (269)
T 3gk3_A           77 FKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGI  113 (269)
T ss_dssp             CEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            22 346889998888887777665  78999877653

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=91.31  E-value=0.94  Score=39.08  Aligned_cols=84  Identities=20%  Similarity=0.169  Sum_probs=49.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+ +++.  .+..+.              ++++.++.  ..... +..|.+
T Consensus        15 k~vlITGasggiG~~~a~~l~~-~G~~V~~~-~r~~--~~~~~~--------------~~~l~~~~--~~~~~~~~~Dl~   74 (265)
T 1h5q_A           15 KTIIVTGGNRGIGLAFTRAVAA-AGANVAVI-YRSA--ADAVEV--------------TEKVGKEF--GVKTKAYQCDVS   74 (265)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH-TTEEEEEE-ESSC--TTHHHH--------------HHHHHHHH--TCCEEEEECCTT
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCeEEEE-eCcc--hhhHHH--------------HHHHHHhc--CCeeEEEEeeCC
Confidence            5799999999999999999886 57887654 4422  111110              11111000  01222 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  .+.+|+-..|
T Consensus        75 ~~~~~~~~~~~~~~~~~~id~li~~Ag  101 (265)
T 1h5q_A           75 NTDIVTKTIQQIDADLGPISGLIANAG  101 (265)
T ss_dssp             CHHHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            888777777665542  3666776554

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=91.29  E-value=0.54  Score=41.79  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=26.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   32 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLE-NGYSVNTTI   32 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             CEEEEECChhHHHHHHHHHHHH-CCCEEEEEE
Confidence            4799999999999999999875 578888755

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=91.24  E-value=1  Score=38.86  Aligned_cols=33  Identities=21%  Similarity=0.163  Sum_probs=27.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      +.+|.|.|++|.+|+.+++.+.+..+.+++.+.
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~   36 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTA   36 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEe
Confidence            467999999999999999998863678877643

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=91.24  E-value=0.32  Score=46.11  Aligned_cols=98  Identities=14%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEe-cCCC---Ccchhhhh----cCcC-----CCCccee---cCHHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID-SHSV---GEDIGMVC----DMEQ-----PLEIPVM---SDLTMV   97 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd-~~~~---g~d~~~~~----g~~~-----~~gv~v~---~dl~~~   97 (300)
                      |.||.|.|+||-+|+.-.+.+.+.|+ +++++... ....   .+.+.++-    .+..     ..++.++   +.+.++
T Consensus        21 mk~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~nv~~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~G~~~l~~~  100 (398)
T 2y1e_A           21 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAATRL  100 (398)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSCHHHHHHHHHHHCCCCEEESCHHHHHHHCCCSEESTTHHHHH
T ss_pred             ceEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCCHHHHHHHHHHcCCCEEEEcCHHHhhhcCCEEEecHHHHHHH
Confidence            57899999999999999999998887 99999876 3221   01111110    0000     0011222   123333


Q ss_pred             HhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEe
Q 022250           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (300)
                      ..    ..++|+|+-.-.-.+-..-...|+++|+.+-..
T Consensus       101 a~----~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaLA  135 (398)
T 2y1e_A          101 VE----QTEADVVLNALVGALGLRPTLAALKTGARLALA  135 (398)
T ss_dssp             HH----HSCCSEEEECCCSGGGHHHHHHHHHHTCEEEEC
T ss_pred             hc----CCCCCEEEEeCcCHHHHHHHHHHHHCCCceEEc
Confidence            32    246899987766666677777888999887665

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.23  E-value=0.17  Score=46.03  Aligned_cols=125  Identities=10%  Similarity=0.059  Sum_probs=64.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcC-cCCCCccee--cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDM-EQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~-~~~~gv~v~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      ..+|+|+|+ |.||+.++..+.+ .++ +++ +++++.  ..+..++.. ....+ .+.  +++.+.+      .++|+|
T Consensus       141 ~~~vlVlGa-Gg~g~aia~~L~~-~G~~~V~-v~nR~~--~ka~~la~~~~~~~~-~~~~~~~~~~~~------~~aDiv  208 (297)
T 2egg_A          141 GKRILVIGA-GGGARGIYFSLLS-TAAERID-MANRTV--EKAERLVREGDERRS-AYFSLAEAETRL------AEYDII  208 (297)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCSEEE-EECSSH--HHHHHHHHHSCSSSC-CEECHHHHHHTG------GGCSEE
T ss_pred             CCEEEEECc-HHHHHHHHHHHHH-CCCCEEE-EEeCCH--HHHHHHHHHhhhccC-ceeeHHHHHhhh------ccCCEE
Confidence            368999998 9999999999875 466 554 566542  222223210 00111 121  3444554      378999


Q ss_pred             EEcCCchhHH-----HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          111 IDFTDASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       111 IDfT~p~~~~-----~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      |.+|+.....     ..-..+++.+.-++--.+  ++.+. .|.+.+++.|..++=    .+++ |+.|.++.+
T Consensus       209 In~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y--~P~~T-~ll~~A~~~G~~~v~----Gl~M-Lv~Qa~~af  274 (297)
T 2egg_A          209 INTTSVGMHPRVEVQPLSLERLRPGVIVSDIIY--NPLET-KWLKEAKARGARVQN----GVGM-LVYQGALAF  274 (297)
T ss_dssp             EECSCTTCSSCCSCCSSCCTTCCTTCEEEECCC--SSSSC-HHHHHHHHTTCEEEC----SHHH-HHHHHHHHH
T ss_pred             EECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC--CCCCC-HHHHHHHHCcCEEEC----CHHH-HHHHHHHHH
Confidence            9988543211     001122334443332122  23222 366677888876542    2443 445555444

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=91.21  E-value=0.48  Score=43.96  Aligned_cols=62  Identities=18%  Similarity=0.130  Sum_probs=43.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|. |++|+.+++.+.. =++++++ +|+..  .+...      +.++ .+.++++++.      .+|+|+-..
T Consensus       141 g~tvGIiG~-G~IG~~va~~~~~-fg~~v~~-~d~~~--~~~~~------~~~~-~~~~l~ell~------~sDivslh~  202 (334)
T 3kb6_A          141 RLTLGVIGT-GRIGSRVAMYGLA-FGMKVLC-YDVVK--REDLK------EKGC-VYTSLDELLK------ESDVISLHV  202 (334)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSC--CHHHH------HTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             CcEEEEECc-chHHHHHHHhhcc-cCceeee-cCCcc--chhhh------hcCc-eecCHHHHHh------hCCEEEEcC
Confidence            368999997 9999999998764 5888875 66532  11111      1222 3578999995      689988654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=91.19  E-value=0.69  Score=40.34  Aligned_cols=81  Identities=23%  Similarity=0.307  Sum_probs=52.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+.               .+.+.     .... +..|.+
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~-----~~~~~~~~D~~   64 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVR-EGATVAI-ADIDI--ERARQA---------------AAEIG-----PAAYAVQMDVT   64 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH---------------HHHHC-----TTEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH---------------HHHhC-----CCceEEEeeCC
Confidence            4699999999999999999885 5788664 45431  111111               01111     1222 446888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        65 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~   92 (259)
T 4e6p_A           65 RQDSIDAAIAATVEHAGGLDILVNNAAL   92 (259)
T ss_dssp             CHHHHHHHHHHHHHHSSSCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            888888777766665  68888877654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=91.17  E-value=0.19  Score=45.75  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=25.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      -+|.|+|++|.+|+.+++.+.. .+.++++..
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~a~~-~G~~Vi~~~  177 (333)
T 1wly_A          147 DYVLIHAAAGGMGHIMVPWARH-LGATVIGTV  177 (333)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHH-CCCEEEEEe
Confidence            4699999889999999998775 577877643

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=91.14  E-value=1.6  Score=37.83  Aligned_cols=81  Identities=19%  Similarity=0.188  Sum_probs=51.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+..              +++ .     ..+. +..|.+
T Consensus         8 k~~lVTGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~-~-----~~~~~~~~Dv~   63 (257)
T 3tpc_A            8 RVFIVTGASSGLGAAVTRMLAQ-EGATVLG-LDLKP--PAGEEPA--------------AEL-G-----AAVRFRNADVT   63 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESSC--C--------------------------------CEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EeCCh--HHHHHHH--------------HHh-C-----CceEEEEccCC
Confidence            4689999999999999999885 5788665 44432  1111110              011 1     1222 346888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+=..|.
T Consensus        64 ~~~~v~~~~~~~~~~~g~id~lv~nAg~   91 (257)
T 3tpc_A           64 NEADATAALAFAKQEFGHVHGLVNCAGT   91 (257)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            888888887777665  78999876653

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=91.13  E-value=1.9  Score=38.06  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=52.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+.              .+++-+.   ...+. +..|.+
T Consensus        25 k~~lVTGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~--------------~~~l~~~---~~~~~~~~~Dv~   83 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAA-RGIAVYG-CARDA--KNVSAA--------------VDGLRAA---GHDVDGSSCDVT   83 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH--------------HHHHHTT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH--------------HHHHHhc---CCcEEEEECCCC
Confidence            4699999999999999999885 5888764 44431  111111              0111110   01222 345888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++.+.+.+..+.+.  ++.+|+-..|.
T Consensus        84 d~~~v~~~~~~~~~~~g~id~lv~nAg~  111 (279)
T 3sju_A           84 STDEVHAAVAAAVERFGPIGILVNSAGR  111 (279)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence            898888888777665  68888876653

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=91.09  E-value=1.2  Score=37.92  Aligned_cols=80  Identities=15%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDf  113 (300)
                      ..+|.|.|++|.+|+.+++.+.+ .+.+++.. +++.  ...                  +++.+++   ... -+..|.
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~-~G~~V~~~-~r~~--~~~------------------~~~~~~~---~~~~~~~~D~   59 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHA-KGYRVGLM-ARDE--KRL------------------QALAAEL---EGALPLPGDV   59 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHH-TTCEEEEE-ESCH--HHH------------------HHHHHHS---TTCEEEECCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEE-ECCH--HHH------------------HHHHHHh---hhceEEEecC
Confidence            45799999999999999999885 57887653 4321  111                  1111100   112 234578


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      +.++...+.+..+.+.  ++.+|+-..|
T Consensus        60 ~~~~~~~~~~~~~~~~~~~id~li~~Ag   87 (234)
T 2ehd_A           60 REEGDWARAVAAMEEAFGELSALVNNAG   87 (234)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888777766655443  6888887665

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=91.09  E-value=0.22  Score=48.85  Aligned_cols=67  Identities=16%  Similarity=0.241  Sum_probs=43.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |.||+.+++.+.. -+++++ ++|++.  .... .+   ...|+. +.++++++.      .+|+||+++
T Consensus       274 GktV~IiG~-G~IG~~~A~~lka-~Ga~Vi-v~d~~~--~~~~-~A---~~~Ga~-~~~l~e~l~------~aDvVi~at  337 (494)
T 3ce6_A          274 GKKVLICGY-GDVGKGCAEAMKG-QGARVS-VTEIDP--INAL-QA---MMEGFD-VVTVEEAIG------DADIVVTAT  337 (494)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHH-HH---HHTTCE-ECCHHHHGG------GCSEEEECS
T ss_pred             cCEEEEEcc-CHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHH-HH---HHcCCE-EecHHHHHh------CCCEEEECC
Confidence            368999998 9999999998875 477765 466532  1111 11   123443 346777763      789999987


Q ss_pred             Cch
Q 022250          115 DAS  117 (300)
Q Consensus       115 ~p~  117 (300)
                      ...
T Consensus       338 gt~  340 (494)
T 3ce6_A          338 GNK  340 (494)
T ss_dssp             SSS
T ss_pred             CCH
Confidence            433

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=91.07  E-value=0.2  Score=45.84  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=25.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      |||+|+|+ |++|+.++-.+...+-+ || ..+|..
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el-~L~Di~   34 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEI-ALVDIA   34 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEE-EEECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEE-EEEeCC
Confidence            79999997 99999999888766554 44 467753

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=91.04  E-value=1.7  Score=38.15  Aligned_cols=85  Identities=20%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      ..+.|.|++|.+|+.+++.+.+ .+..++.....+.  ....++               .+.+.+  ....+. +..|.+
T Consensus        29 k~vlVTGas~gIG~aia~~la~-~G~~V~~~~~~~~--~~~~~~---------------~~~~~~--~~~~~~~~~~D~~   88 (269)
T 4dmm_A           29 RIALVTGASRGIGRAIALELAA-AGAKVAVNYASSA--GAADEV---------------VAAIAA--AGGEAFAVKADVS   88 (269)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH--TTCCEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCCh--HHHHHH---------------HHHHHh--cCCcEEEEECCCC
Confidence            4588999999999999999885 5788765433221  111111               111110  001222 346888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        89 d~~~v~~~~~~~~~~~g~id~lv~nAg~  116 (269)
T 4dmm_A           89 QESEVEALFAAVIERWGRLDVLVNNAGI  116 (269)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            888888877766665  78998876653

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=91.02  E-value=0.26  Score=45.79  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             CCCCcceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      +...++||+|+|+ |.||..++..+....-. +|+ .+|.+
T Consensus        15 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~-L~Di~   53 (331)
T 4aj2_A           15 EQVPQNKITVVGV-GAVGMACAISILMKDLADELA-LVDVI   53 (331)
T ss_dssp             --CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSC
T ss_pred             ccCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEE-EEeCC
Confidence            3344689999998 99999999888765332 544 57753

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=91.00  E-value=0.9  Score=38.90  Aligned_cols=85  Identities=19%  Similarity=0.178  Sum_probs=50.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      +.+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....++.              +++..+  ...+.. +..|.
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~~~~~--~~~~~~~~~~D~   61 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLA-RGDRVAA-LDLSA--ETLEETA--------------RTHWHA--YADKVLRVRADV   61 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHSTT--TGGGEEEEECCT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHHh--cCCcEEEEEecC
Confidence            35789999999999999999886 4677665 44431  1111110              011000  001122 34578


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      +.++...+.+..+.+.  ++.+|+-..|
T Consensus        62 ~~~~~~~~~~~~~~~~~~~id~li~~Ag   89 (250)
T 2cfc_A           62 ADEGDVNAAIAATMEQFGAIDVLVNNAG   89 (250)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            8888777776655543  6888887665

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=90.96  E-value=2  Score=37.81  Aligned_cols=87  Identities=15%  Similarity=0.162  Sum_probs=51.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+..              +++-+.-.....+. +..|.+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~-~G~~V~~-~~r~~--~~~~~~~--------------~~l~~~~~~~~~~~~~~~Dv~   73 (281)
T 3svt_A           12 RTYLVTGGGSGIGKGVAAGLVA-AGASVMI-VGRNP--DKLAGAV--------------QELEALGANGGAIRYEPTDIT   73 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHTTCCSSCEEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH--------------HHHHHhCCCCceEEEEeCCCC
Confidence            4699999999999999999885 5788664 45432  1111110              11110000000122 245888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  ++++|+-..|.
T Consensus        74 ~~~~v~~~~~~~~~~~g~id~lv~nAg~  101 (281)
T 3svt_A           74 NEDETARAVDAVTAWHGRLHGVVHCAGG  101 (281)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            888888877776654  68888866553

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=90.96  E-value=0.66  Score=44.66  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=26.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ..||.|+|+ |.+|..+++.+.. .++.=+.++|.
T Consensus        40 ~~~VlvvG~-GGlGs~va~~La~-aGvg~i~ivD~   72 (434)
T 1tt5_B           40 TCKVLVIGA-GGLGCELLKNLAL-SGFRQIHVIDM   72 (434)
T ss_dssp             TCCEEEECS-STHHHHHHHHHHH-TTCCCEEEEEC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence            368999998 9999999999875 46655566773

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=90.95  E-value=0.19  Score=41.96  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=27.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAI   67 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~v   67 (300)
                      |++||.|.|++|.+|+.+++.+.+.... +++++.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~   38 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPA   38 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCB
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEe
Confidence            5579999999999999999999875432 777643

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.93  E-value=0.13  Score=47.74  Aligned_cols=34  Identities=26%  Similarity=0.265  Sum_probs=26.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      ++||+|+|+ |.||..++..+...+-+ +|+ .+|.+
T Consensus         5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~-l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGA-GFVGSSYAFALINQGITDELV-VIDVN   39 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEE-EEecc
Confidence            479999997 99999999988765433 554 56753

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=90.90  E-value=0.4  Score=41.45  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=27.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      +.++.|.|++|.+|+.+++.+.+..+..++. +++
T Consensus         4 ~k~vlITGas~gIG~~~a~~l~~~~g~~v~~-~~~   37 (244)
T 4e4y_A            4 MANYLVTGGSKGIGKAVVELLLQNKNHTVIN-IDI   37 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTSTTEEEEE-EES
T ss_pred             CCeEEEeCCCChHHHHHHHHHHhcCCcEEEE-ecc
Confidence            4679999999999999999988756776654 454

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=90.89  E-value=2.8  Score=37.98  Aligned_cols=86  Identities=22%  Similarity=0.217  Sum_probs=53.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC----CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ..+.|.|++|.+|+.+++.+.+ .+.+++.. |...    .+++....           ..-.+++.+     ....++.
T Consensus        10 k~~lVTGas~GIG~~~a~~La~-~Ga~Vv~~-~~~~~~~~~~R~~~~~-----------~~~~~~l~~-----~~~~~~~   71 (319)
T 1gz6_A           10 RVVLVTGAGGGLGRAYALAFAE-RGALVVVN-DLGGDFKGVGKGSSAA-----------DKVVEEIRR-----RGGKAVA   71 (319)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEE-CCCBCTTSCBCCSHHH-----------HHHHHHHHH-----TTCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE-cCCcccccccCCHHHH-----------HHHHHHHHh-----hCCeEEE
Confidence            5689999999999999999885 57877653 3210    01111000           000112211     2345678


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          112 DFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      |.+.++.....+..+.+.  ++++||-.-|
T Consensus        72 D~~~~~~~~~~~~~~~~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           72 NYDSVEAGEKLVKTALDTFGRIDVVVNNAG  101 (319)
T ss_dssp             ECCCGGGHHHHHHHHHHHTSCCCEEEECCC
T ss_pred             eCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            999998877777666554  5888887654

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=90.86  E-value=0.44  Score=46.25  Aligned_cols=137  Identities=8%  Similarity=0.072  Sum_probs=86.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcC---c-------CC-----CCcceecCHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDM---E-------QP-----LEIPVMSDLT   95 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~---~-------~~-----~gv~v~~dl~   95 (300)
                      .+|+|.|. |++|+..++.+.+ .+.++|++.|+     ++.|-|..++.-+   .       ..     .+.... +.+
T Consensus       240 ~~VaVQG~-GnVG~~aa~~L~e-~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v-~~~  316 (456)
T 3r3j_A          240 KKCLVSGS-GNVAQYLVEKLIE-KGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF-ENQ  316 (456)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHH-HTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE-CSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe-CCc
Confidence            68999997 9999999998765 58899998884     3445554433200   0       00     122222 224


Q ss_pred             HHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---HH
Q 022250           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GS  169 (300)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv  169 (300)
                      +++.     .++||.+=+...... .+++....+++..+|+|-- + .+++..+   . -+++  .+++.|-+..   ||
T Consensus       317 ~i~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~---i-L~~r--GI~~~PD~~aNAGGV  385 (456)
T 3r3j_A          317 KPWN-----IPCDIAFPCATQNEINENDADLFIQNKCKMIVEGANMPTHIKALH---K-LKQN--NIILCPSKAANAGGV  385 (456)
T ss_dssp             CGGG-----SCCSEEEECSCTTCBCHHHHHHHHHHTCCEEECCSSSCBCTTHHH---H-HHTT--TCEEECHHHHTTHHH
T ss_pred             cccc-----cCccEEEeCCCccchhhHHHHHHHhcCCeEEEecCCCCCCHHHHH---H-HHHC--CCEEeChHHhcCCce
Confidence            5664     689999988765554 7788888888999999965 2 4544322   2 2343  4577787654   33


Q ss_pred             HH-HHHHHHHhccCCCCe
Q 022250          170 IL-LQQAAISASFHYKNV  186 (300)
Q Consensus       170 ~l-l~~~a~~~~~~~~di  186 (300)
                      .. -.+..+....++|+-
T Consensus       386 ~vS~~E~~qn~~~~~w~~  403 (456)
T 3r3j_A          386 AVSGLEMSQNSMRLQWTH  403 (456)
T ss_dssp             HHHHHHHHHHHHTCCCCH
T ss_pred             eeehHHHhhcccccCCCH
Confidence            22 145566666666754

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=90.86  E-value=0.85  Score=45.83  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=27.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      +++|.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus        11 ~~~ilVTGatG~IG~~l~~~L~~-~G~~V~~~~   42 (699)
T 1z45_A           11 SKIVLVTGGAGYIGSHTVVELIE-NGYDCVVAD   42 (699)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEE
Confidence            47899999999999999999886 478888754

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=90.81  E-value=1.2  Score=40.73  Aligned_cols=30  Identities=3%  Similarity=0.178  Sum_probs=23.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      .|.|+|++|.+|...++.+.. .+.++++..
T Consensus       167 ~vli~gg~g~vG~~a~qla~~-~Ga~Vi~~~  196 (349)
T 3pi7_A          167 AFVMTAGASQLCKLIIGLAKE-EGFRPIVTV  196 (349)
T ss_dssp             EEEESSTTSHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCEEEEEe
Confidence            466776679999999997764 477887654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=90.75  E-value=1.9  Score=37.44  Aligned_cols=80  Identities=25%  Similarity=0.272  Sum_probs=50.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ...                  +++.+++  ..... +..|.+
T Consensus        13 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~-~~r~~--~~~------------------~~~~~~~--~~~~~~~~~D~~   68 (263)
T 3ak4_A           13 RKAIVTGGSKGIGAAIARALDK-AGATVAI-ADLDV--MAA------------------QAVVAGL--ENGGFAVEVDVT   68 (263)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHH------------------HHHHHTC--TTCCEEEECCTT
T ss_pred             CEEEEeCCCChHHHHHHHHHHH-CCCEEEE-EeCCH--HHH------------------HHHHHHH--hcCCeEEEEeCC
Confidence            5799999999999999999885 5788765 34431  111                  1111100  01122 346788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++|+-..|
T Consensus        69 d~~~v~~~~~~~~~~~g~iD~lv~~Ag   95 (263)
T 3ak4_A           69 KRASVDAAMQKAIDALGGFDLLCANAG   95 (263)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888777766655544  6888887655

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=90.73  E-value=0.18  Score=45.74  Aligned_cols=126  Identities=14%  Similarity=0.030  Sum_probs=65.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---c-CcCCCCccee--cCHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---D-MEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g-~~~~~gv~v~--~dl~~~l~~~~~~~~~DV  109 (300)
                      -++.|+|+ |++|+.++..+.+ .+.+=+-+++++.  ..+.+++   + ......+..+  +++++.+.      ++|+
T Consensus       128 k~vlVlGa-GG~g~aia~~L~~-~G~~~v~i~~R~~--~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~------~~Di  197 (283)
T 3jyo_A          128 DSVVQVGA-GGVGNAVAYALVT-HGVQKLQVADLDT--SRAQALADVINNAVGREAVVGVDARGIEDVIA------AADG  197 (283)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHH-TTCSEEEEECSSH--HHHHHHHHHHHHHHTSCCEEEECSTTHHHHHH------HSSE
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-CCCCEEEEEECCH--HHHHHHHHHHHhhcCCceEEEcCHHHHHHHHh------cCCE
Confidence            58999998 9999999998886 4663344566542  1222221   0 0001123233  37877774      6899


Q ss_pred             EEEcCCchhHH----HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          110 VIDFTDASTVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       110 VIDfT~p~~~~----~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      ||..|+.-...    ..-...+..+ .+|+-. -+++.+ -.+.+.|++.|.+++=    .+++ |+.|++.++
T Consensus       198 VInaTp~Gm~~~~~~pi~~~~l~~~-~~v~Dl-vY~P~~-T~ll~~A~~~G~~~~~----Gl~M-Lv~Qa~~~f  263 (283)
T 3jyo_A          198 VVNATPMGMPAHPGTAFDVSCLTKD-HWVGDV-VYMPIE-TELLKAARALGCETLD----GTRM-AIHQAVDAF  263 (283)
T ss_dssp             EEECSSTTSTTSCSCSSCGGGCCTT-CEEEEC-CCSSSS-CHHHHHHHHHTCCEEC----THHH-HHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCHHHhCCC-CEEEEe-cCCCCC-CHHHHHHHHCcCeEeC----cHHH-HHHHHHHHH
Confidence            99888521110    0111222233 343321 122222 1255666777776552    4443 445555444

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=90.71  E-value=3.4  Score=35.72  Aligned_cols=83  Identities=14%  Similarity=0.165  Sum_probs=51.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++.  ....+.              .+++-..   ..++. +..|.+
T Consensus        10 k~vlVTGas~giG~~ia~~l~~-~G~~V~~-~~r~~--~~~~~~--------------~~~~~~~---~~~~~~~~~D~~   68 (260)
T 2ae2_A           10 CTALVTGGSRGIGYGIVEELAS-LGASVYT-CSRNQ--KELNDC--------------LTQWRSK---GFKVEASVCDLS   68 (260)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH--------------HHHHHHT---TCEEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHH--------------HHHHHhc---CCcEEEEEcCCC
Confidence            5799999999999999999885 5788765 44431  111110              0111110   01122 345788


Q ss_pred             CchhHHHHHHHHHHc---CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF---GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~---G~~vVigTTG  139 (300)
                      .++...+.+..+.+.   ++++|+-..|
T Consensus        69 ~~~~~~~~~~~~~~~~~g~id~lv~~Ag   96 (260)
T 2ae2_A           69 SRSERQELMNTVANHFHGKLNILVNNAG   96 (260)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence            888887777766553   5888887665

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=90.69  E-value=0.61  Score=43.77  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCcCCCCcc-e--e--cCHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIP-V--M--SDLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v--~--~dl~~~l~~~~~~~~~DV  109 (300)
                      -+|.|+|+ |.+|...++.+. .-+. ++++ ++.+.  .. .+++   .++|.. +  +  .++.+.+.+......+|+
T Consensus       215 ~~VlV~Ga-G~vG~~aiqlak-~~Ga~~Vi~-~~~~~--~~-~~~~---~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~  285 (404)
T 3ip1_A          215 DNVVILGG-GPIGLAAVAILK-HAGASKVIL-SEPSE--VR-RNLA---KELGADHVIDPTKENFVEAVLDYTNGLGAKL  285 (404)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCSEEEE-ECSCH--HH-HHHH---HHHTCSEEECTTTSCHHHHHHHHTTTCCCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHH-HcCCCEEEE-ECCCH--HH-HHHH---HHcCCCEEEcCCCCCHHHHHHHHhCCCCCCE
Confidence            46999998 999999999776 4577 6665 44321  11 1111   112211 1  1  233333322111235888


Q ss_pred             EEEcCCch-hHHHHHHHHH-----HcCCCEEEeCC
Q 022250          110 VIDFTDAS-TVYDNVKQAT-----AFGMRSVVYVP  138 (300)
Q Consensus       110 VIDfT~p~-~~~~~~~~al-----~~G~~vVigTT  138 (300)
                      |+|++... ...+.+..++     ..|.=+++|.+
T Consensus       286 vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          286 FLEATGVPQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             EEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            88887554 4555555554     34554556654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.66  E-value=0.098  Score=47.57  Aligned_cols=123  Identities=13%  Similarity=0.076  Sum_probs=66.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-e--ec--C-HHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V--MS--D-LTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v--~~--d-l~~~l~~~~~~~~~DV  109 (300)
                      -+|.|+|++|.+|...++.++ ..+.++++......  .   +++   .++|.. +  +.  + +.+.+      ..+|+
T Consensus       154 ~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~~~~~--~---~~~---~~lGa~~~i~~~~~~~~~~~~------~g~D~  218 (321)
T 3tqh_A          154 DVVLIHAGAGGVGHLAIQLAK-QKGTTVITTASKRN--H---AFL---KALGAEQCINYHEEDFLLAIS------TPVDA  218 (321)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEECHHH--H---HHH---HHHTCSEEEETTTSCHHHHCC------SCEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEeccch--H---HHH---HHcCCCEEEeCCCcchhhhhc------cCCCE
Confidence            469999877999999999776 45888887653221  1   111   122322 1  22  2 33333      47999


Q ss_pred             EEEcCCchhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEc-CCCcHHHHHHHHHHHHhcc
Q 022250          110 VIDFTDASTVYDNVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-PTLSIGSILLQQAAISASF  181 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~-~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a-~N~SiGv~ll~~~a~~~~~  181 (300)
                      ++|++..+.. +.+..+++ .|.=+.+|..  ....  .+. ....+++.+... .+.+  -..+.++.+.+..
T Consensus       219 v~d~~g~~~~-~~~~~~l~~~G~iv~~g~~--~~~~--~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~  284 (321)
T 3tqh_A          219 VIDLVGGDVG-IQSIDCLKETGCIVSVPTI--TAGR--VIE-VAKQKHRRAFGLLKQFN--IEELHYLGKLVSE  284 (321)
T ss_dssp             EEESSCHHHH-HHHGGGEEEEEEEEECCST--THHH--HHH-HHHHTTCEEECCCCCCC--HHHHHHHHHHHHT
T ss_pred             EEECCCcHHH-HHHHHhccCCCEEEEeCCC--Cchh--hhh-hhhhcceEEEEEecCCC--HHHHHHHHHHHHC
Confidence            9999987666 44444444 4444444433  2222  122 223344655432 1222  2356666666654

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=90.61  E-value=1.2  Score=38.60  Aligned_cols=84  Identities=21%  Similarity=0.239  Sum_probs=49.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.....+.  ....++.              +++-..   ..+.. +..|.+
T Consensus        22 k~vlItGasggiG~~la~~l~~-~G~~v~~~~r~~~--~~~~~~~--------------~~l~~~---~~~~~~~~~D~~   81 (274)
T 1ja9_A           22 KVALTTGAGRGIGRGIAIELGR-RGASVVVNYGSSS--KAAEEVV--------------AELKKL---GAQGVAIQADIS   81 (274)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCch--HHHHHHH--------------HHHHhc---CCcEEEEEecCC
Confidence            5799999999999999999886 4788776433121  1111100              111100   01122 345788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++|+-..|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~d~vi~~Ag  108 (274)
T 1ja9_A           82 KPSEVVALFDKAVSHFGGLDFVMSNSG  108 (274)
T ss_dssp             SHHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888777766655443  6788876654

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=90.59  E-value=2.9  Score=36.63  Aligned_cols=93  Identities=18%  Similarity=0.335  Sum_probs=53.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      .++.|.|++|.+|+.+++.+.+ .+.+++. ++++.......        +.....+.++++.+.+. .....   +..|
T Consensus        11 k~~lVTGas~gIG~a~a~~l~~-~G~~V~~-~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D   79 (281)
T 3s55_A           11 KTALITGGARGMGRSHAVALAE-AGADIAI-CDRCENSDVVG--------YPLATADDLAETVALVE-KTGRRCISAKVD   79 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EECCSCCTTCS--------SCCCCHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCeEEE-EeCCccccccc--------cccccHHHHHHHHHHHH-hcCCeEEEEeCC
Confidence            5799999999999999999885 5788664 45431000000        00000011112111000 01222   3458


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .|.++...+.+..+.+.  ++++++=..|
T Consensus        80 v~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (281)
T 3s55_A           80 VKDRAALESFVAEAEDTLGGIDIAITNAG  108 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            89998888888777665  7899987665

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.58  E-value=0.64  Score=42.24  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=24.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc--EEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~   70 (300)
                      +||+|+|+ |.||..++..+... ++  +++ .+|.+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~-g~~~eV~-L~D~~   34 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLR-GSCSELV-LVDRD   34 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCCSEEE-EECSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCCCEEE-EEeCC
Confidence            58999998 99999999888754 55  654 56754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1yl7a2	109	d.81.1.3 (A:106-214) Dihydrodipicolinate reductase	9e-20
d1diha1	162	c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate re	5e-11
d1yl7a1	135	c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate re	4e-07
d1diha2	110	d.81.1.3 (A:131-240) Dihydrodipicolinate reductase	1e-05
d1vm6a3	128	c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate red	1e-04

>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 109

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 80.4 bits (198), Expect = 9e-20
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 2/108 (1%)

Query: 166 SIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNREDIST 224
           +IG++L    A  A+  + + E++E   P+  D PS  A + A  ++   +       +T
Sbjct: 1   AIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDAT 60

Query: 225 DVKARGQVLG-EDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITD 271
                G      DG+ VH++ L GL +   V F   GE  +I+HD  D
Sbjct: 61  STSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLD 108

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 57.9 bits (139), Expect = 5e-11
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 11/163 (6%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS 92
            +NI+V I GA   +GR  + A     G+++  A++            ++    +  V  
Sbjct: 2   DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV 61

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152
             ++     +      V IDFT      +++      G   V+           A+    
Sbjct: 62  QSSL----DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAA 117

Query: 153 DKASMGCLIAPTLSIGS-----ILLQQAAISASFHYKNVEIVE 190
               +  + A   S+             +   S  +   ++++
Sbjct: 118 AD--IAIVFAANFSMTFANGAVRSALWLSGKESGLFDMRDVLD 158

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 32/159 (20%)

Query: 37  KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
           +V + GA  ++G   V AV  A  + ++  +D+      +                    
Sbjct: 1   RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLL-------------------- 40

Query: 97  VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA- 155
                       VVIDFT    V  N++     G+ +VV       E    + ++     
Sbjct: 41  ------TDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKP 94

Query: 156 SMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVE 190
           +   LIAP  +       + +++ A         +E + 
Sbjct: 95  NTSVLIAPNFTSFVPGVLLAVRRIAERPGLTV-GLEPLL 132

>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 110

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 171 LLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKAR 229
           LL++AA     +  ++EI+E    +  D PS  A  +   +++      ++      +  
Sbjct: 9   LLEKAAKVMGDYT-DIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGH 67

Query: 230 GQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITD 271
                   +   ++    +    T  F+  GE   I H  + 
Sbjct: 68  TGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASS 109

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Length = 128

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 31/154 (20%)

Query: 37  KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
           K  I G    +G+  +  V   +G E+   +D                            
Sbjct: 2   KYGIVGYSGRMGQE-IQKVFSEKGHELVLKVD---------------------------- 32

Query: 97  VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156
            +  + +  +  VVIDF+    +   V     +    V+    ++ E +  L     +  
Sbjct: 33  -VNGVEELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVP 91

Query: 157 -MGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 189
            +        +IG++   +  +       + E V
Sbjct: 92  VVQAYSRTVFAIGALKAAEFLVGKDPGMYSFEEV 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	100.0
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	100.0
d1yl7a2	109	Dihydrodipicolinate reductase {Mycobacterium tuber	100.0
d1diha2	110	Dihydrodipicolinate reductase {Escherichia coli [T	99.97
d1vm6a2	86	Dihydrodipicolinate reductase {Thermotoga maritima	99.97
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	99.96
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	99.7
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	99.7
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	99.65
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	99.64
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	99.64
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	99.59
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	99.57
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	99.54
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	99.53
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.12
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.07
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.06
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.02
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	98.98
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.81
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.73
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	98.59
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	98.48
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.43
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	98.4
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.36
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.36
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	98.35
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.33
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.29
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	98.22
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.22
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	98.21
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.2
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.19
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.16
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	98.15
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	98.12
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.09
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.89
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.85
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.8
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.73
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.69
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.69
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.59
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.57
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.56
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	97.54
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.52
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.49
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.46
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.43
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.41
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.4
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.36
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.34
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.33
d1gr0a1	243	Myo-inositol 1-phosphate synthase {Mycobacterium t	97.28
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.25
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.22
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.07
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.02
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.98
d1vjpa1	275	Hypothetical protein TM1419 {Thermotoga maritima [	96.91
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.78
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.75
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.7
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.69
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.46
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.41
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.31
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.28
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	96.26
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.2
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.11
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.02
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	96.02
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.02
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.89
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.87
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	95.86
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.82
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.8
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.77
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.71
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.7
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.67
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.63
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.48
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.37
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.34
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.31
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.29
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.2
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.13
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	95.06
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.04
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.88
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.85
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.8
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.8
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.72
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.69
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.68
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.56
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.49
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.44
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.42
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.42
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.41
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.35
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.3
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.21
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.18
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.06
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.01
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.98
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.83
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.8
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.64
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.61
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	93.59
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.58
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	93.58
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.54
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	93.46
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.23
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	93.18
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.18
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.13
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.07
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.05
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.03
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	92.84
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.81
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.73
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.49
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.48
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.46
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.36
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.29
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.26
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.19
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.17
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	91.81
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.52
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.41
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.39
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.32
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	91.31
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	90.89
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.84
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	90.81
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.35
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.34
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	90.33
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.29
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.27
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.23
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	90.12
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.04
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.02
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	89.93
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	89.88
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	89.86
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.7
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	89.64
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	89.58
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.53
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.47
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	89.26
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	89.25
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	89.25
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	89.19
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.14
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.95
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	88.77
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	88.73
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	88.55
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.44
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	88.39
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	88.27
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.98
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	87.95
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.82
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	87.64
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	87.59
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.45
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.34
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	87.32
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	86.76
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	86.76
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	86.72
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	86.57
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	86.46
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	86.44
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	86.39
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.23
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	86.22
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	86.18
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	85.96
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.93
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	85.9
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.87
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	85.66
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	85.6
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.57
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.34
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	85.21
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	85.16
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	85.1
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	84.98
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	84.94
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	84.93
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.73
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	84.69
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	84.66
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.48
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	84.44
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	83.8
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	83.64
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	83.38
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	83.37
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	83.17
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	83.1
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	83.04
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	83.0
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	82.94
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	82.86
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	82.58
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	82.41
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	82.19
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	82.11
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	82.02
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	81.66
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	81.58
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	81.23
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	81.01
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	80.88
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	80.45
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	80.31
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	80.02

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.5e-39  Score=272.82  Aligned_cols=152  Identities=20%  Similarity=0.251  Sum_probs=132.3

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      +++|||+|+||+|||||++++++.++++++|++++++.   ..|.|.+++.+. .+.++++++|+++++      .++||
T Consensus         2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~-~~~~~~~~~~~~~~~------~~~DV   74 (162)
T d1diha1           2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGA-GKTGVTVQSSLDAVK------DDFDV   74 (162)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSS-SCCSCCEESCSTTTT------TSCSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhcc-ccCCceeeccHHHHh------cccce
Confidence            45799999999999999999999999999999999953   468899988886 477899999999887      48999


Q ss_pred             EEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH-HHHHHHHHhcc---CCCC
Q 022250          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-LLQQAAISASF---HYKN  185 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~-ll~~~a~~~~~---~~~d  185 (300)
                      +||||+|+++.++++.|+++|+|+|+|||||+++|.+.|++++++  +|+++|||||+|++ ++.+++..++.   .+||
T Consensus        75 iIDFs~p~~~~~~~~~a~~~~~~~ViGTTG~~~~~~~~i~~~a~~--ipi~~apN~SlGi~~~~~~~~~~~~~~~~~~fd  152 (162)
T d1diha1          75 FIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD--IAIVFAANFSMTFANGAVRSALWLSGKESGLFD  152 (162)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTT--SCEEECSCCCHHHHHHHHHHHHHHTTCCSSEEC
T ss_pred             EEEeccHHHHHHHHHHHHhccceeEEecCCCcHHHHHHHHHHcCC--CCEEEEccccHHHHHHHHHHHHHHHHhhccCCC
Confidence            999999999999999999999999999999999999999999988  99999999999984 33333333332   2366


Q ss_pred             -eEEEEccC
Q 022250          186 -VEIVESRP  193 (300)
Q Consensus       186 -ieIiE~Hh  193 (300)
                       +||+|+||
T Consensus       153 ~~eI~E~HH  161 (162)
T d1diha1         153 MRDVLDLNN  161 (162)
T ss_dssp             HHHHTTGGG
T ss_pred             eeEEEecCC
Confidence             59999998

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.4e-37  Score=255.07  Aligned_cols=131  Identities=22%  Similarity=0.258  Sum_probs=115.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (300)
                      ||+|+||+||||+.+++.+.+.++++|++.+|...   +                  +.....     .++|||||||+|
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---~------------------~~~~~~-----~~~DvvIDFS~p   54 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---P------------------LSLLTD-----GNTEVVIDFTHP   54 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---C------------------THHHHT-----TTCSEEEECCCT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---c------------------hhhhcc-----ccCCEEEEcccH
Confidence            89999999999999999999999999999998531   1                  122332     579999999999


Q ss_pred             hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHH-hhhCCCeEEEcCCCcHHHHHHHHHHHHhccC---CCCeEEEEcc
Q 022250          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSIGSILLQQAAISASFH---YKNVEIVESR  192 (300)
Q Consensus       117 ~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~-a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~---~~dieIiE~H  192 (300)
                      +++.++++.|+++|+|+|+|||||+++|.++|+++ ++.+++|++||||||+|||++.++.+.+++.   +||+||+|.|
T Consensus        55 ~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~~l~~~aa~~l~~~~diEiIe~h  134 (135)
T d1yl7a1          55 DVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVLLAVRRIAERPGLTVGLEPLLDL  134 (135)
T ss_dssp             TTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHHHHHHHGGGSCEEEESSGGGSCC
T ss_pred             HHHHHHHHHHHhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCccHHHHHHHHHHHHHHHhccccCCeeehhhc
Confidence            99999999999999999999999999999999985 4456699999999999999998888777663   5899999999


Q ss_pred             C
Q 022250          193 P  193 (300)
Q Consensus       193 h  193 (300)
                      |
T Consensus       135 H  135 (135)
T d1yl7a1         135 H  135 (135)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.5e-33  Score=221.25  Aligned_cols=102  Identities=29%  Similarity=0.434  Sum_probs=86.4

Q ss_pred             cHHHHHHHHHHHHhccCCCCeEEEEccC-CCCCCCchHHHHHHHHHHhcCC------ccccCccccccccccccccCCCe
Q 022250          166 SIGSILLQQAAISASFHYKNVEIVESRP-NARDFPSPDATQIANNLSNLGQ------IYNREDISTDVKARGQVLGEDGV  238 (300)
Q Consensus       166 SiGv~ll~~~a~~~~~~~~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~------~~~r~~~~~~~~~rg~~~~~~~i  238 (300)
                      |+|+|||+++++.+++++.|+||+|+|| +|+|||||||++||+.|++...      .+.+.+.   .+.++..  .++|
T Consensus         1 SlGvnll~~l~~~aa~~~~dieI~E~HH~~K~DaPSGTAl~la~~i~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~I   75 (109)
T d1yl7a2           1 AIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSL---PGARGAD--VDGI   75 (109)
T ss_dssp             CHHHHHHHHHHHHHGGGCSEEEEEEEECTTCCEESCHHHHHHHHHHHHHTTTSCCCCCCCCEEC---TTTTCEE--ETTE
T ss_pred             ChHHHHHHHHHHHHHhhCCCcEEEEcccccCCCCCchhHHHHHHHHHHhhcccccccceeEecc---ccccCCc--cCCc
Confidence            8999999999999999888999999999 7999999999999999987432      1122221   1233322  3789


Q ss_pred             eEEEEEcCCCCeeEEEEEccCCcEEEEEEEeCCc
Q 022250          239 RVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDV  272 (300)
Q Consensus       239 ~i~s~R~g~ivg~H~V~f~~~~E~iel~H~a~sR  272 (300)
                      +|||+|+|+++|+|+|+|.+++|+|+|+|+|.||
T Consensus        76 ~i~S~R~g~v~g~H~V~F~~~~E~i~l~H~a~~R  109 (109)
T d1yl7a2          76 PVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDR  109 (109)
T ss_dssp             EEEEEECTTCCEEEEEEEEETTEEEEEEEEECSG
T ss_pred             eEEEEecCCCcEEEEEEEcCCCcEEEEEEEecCC
Confidence            9999999999999999999999999999999998

>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.9e-31  Score=212.20  Aligned_cols=99  Identities=20%  Similarity=0.311  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhccC---CCCeEEEEccC-CCCCCCchHHHHHHHHHHhcC-C------ccccCccccccccccccccC
Q 022250          167 IGSILLQQAAISASFH---YKNVEIVESRP-NARDFPSPDATQIANNLSNLG-Q------IYNREDISTDVKARGQVLGE  235 (300)
Q Consensus       167 iGv~ll~~~a~~~~~~---~~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~-~------~~~r~~~~~~~~~rg~~~~~  235 (300)
                      +|||||+++++.++++   +||+||+|+|| +|+|||||||++|++.|++.. .      .+.+++..   ..|    .+
T Consensus         1 IGvnll~~l~~~~a~~l~~~~dieI~E~HH~~K~DaPSGTAl~lae~i~~~~~~~~~~~~~~~~~~~~---~~~----~~   73 (110)
T d1diha2           1 VGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHT---GER----VP   73 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCC---CSC----CT
T ss_pred             ChHHHHHHHHHHHHHhcccccChhhHHHHHhcCCCCCchHHHHHHHHHHHhhCccccccccccccccc---cCC----CC
Confidence            6999999887776653   68999999999 799999999999999998732 1      11222211   112    13


Q ss_pred             CCeeEEEEEcCCCCeeEEEEEccCCcEEEEEEEeCCc
Q 022250          236 DGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDV  272 (300)
Q Consensus       236 ~~i~i~s~R~g~ivg~H~V~f~~~~E~iel~H~a~sR  272 (300)
                      ++|+|||+|.|+++|+|+|+|.+++|+|||+|+|.||
T Consensus        74 ~~I~i~S~R~g~v~G~H~V~f~~~~E~i~i~H~A~sR  110 (110)
T d1diha2          74 GTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSR  110 (110)
T ss_dssp             TCEEEEEEECTTCCEEEEEEEEETTEEEEEEEEECST
T ss_pred             CccceEEeecCCccEEEEEEecCCCCEEEEEEEeCCC
Confidence            7899999999999999999999999999999999998

>d1vm6a2 d.81.1.3 (A:97-182) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=3.7e-31  Score=200.88  Aligned_cols=83  Identities=31%  Similarity=0.405  Sum_probs=75.0

Q ss_pred             CCcHHHHHHHHHHHHhccC--CCCeEEEEccC-CCCCCCchHHHHHHHHHHhcCCccccCccccccccccccccCCCeeE
Q 022250          164 TLSIGSILLQQAAISASFH--YKNVEIVESRP-NARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRV  240 (300)
Q Consensus       164 N~SiGv~ll~~~a~~~~~~--~~dieIiE~Hh-~K~DaPSGTA~~l~~~i~~~~~~~~r~~~~~~~~~rg~~~~~~~i~i  240 (300)
                      |||+|||+|+++++.+++.  .||++|+|+|| +|+|+|||||++|++.+.                        ++++|
T Consensus         1 NfSlGv~ll~~~~~~~~~~l~~~di~I~E~HH~~K~DaPSGTAl~l~~~i~------------------------~~i~i   56 (86)
T d1vm6a2           1 NFSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAILLESALG------------------------KSVPI   56 (86)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCCSSCHHHHHHHHHTT------------------------SCCCE
T ss_pred             CccHHHHHHHHHHHHHHHhCcccCEEEehhhhhcCCCccchhHHHHHHHHH------------------------hhhhh
Confidence            9999999999887776654  47999999999 799999999999998752                        46889


Q ss_pred             EEEEcCCCCeeEEEEEccCCcEEEEEEEeC
Q 022250          241 HSMVLPGLPSSTTVYFSRPGEVYSIKHDIT  270 (300)
Q Consensus       241 ~s~R~g~ivg~H~V~f~~~~E~iel~H~a~  270 (300)
                      +|+|.|+++|+|+|+|.+++|+|+|+|+|.
T Consensus        57 ~S~R~g~~~G~H~v~f~~~~E~i~i~H~Al   86 (86)
T d1vm6a2          57 HSLRVGGVPGDHVVVFGNIGETIEIKHRAI   86 (86)
T ss_dssp             EEEECTTCCCEEEEEEECSSEEEEEEEEEC
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEEEeC
Confidence            999999999999999999999999999984

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.1e-29  Score=205.51  Aligned_cols=123  Identities=18%  Similarity=0.174  Sum_probs=104.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+|+|++|||||.+.+.+. .+++++++.+|.+.     .                  +.+      .++|||||||+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~-~~~~~l~~~id~~~-----~------------------~~~------~~~DVvIDFS~   50 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFS-EKGHELVLKVDVNG-----V------------------EEL------DSPDVVIDFSS   50 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEEETTE-----E------------------EEC------SCCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHh-cCCCeEEEEECCCc-----H------------------HHh------ccCCEEEEecC
Confidence            689999999999999998765 57999999998542     0                  112      47899999999


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccC---CCCeE-EEE
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH---YKNVE-IVE  190 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~---~~die-IiE  190 (300)
                      |+++.+++++|+++++|+|+|||||+++|.+.|++++++  +|++++||||+|++.+.++++.++..   +||+| |+|
T Consensus        51 p~~~~~~l~~~~~~~~p~ViGTTG~~~~~~~~i~~~ak~--~pv~~a~N~s~~~~~l~~~~~~~~~~~~~~~~~e~iie  127 (128)
T d1vm6a3          51 PEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE--VPVVQAYSRTVFAIGALKAAEFLVGKDPGMYSFEEVIF  127 (128)
T ss_dssp             GGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT--SEEEECSCTHHHHHHHHHHHHHHTTCCSEEECHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHhh--CCEEeeeccChHHHHHHHHHHHHHhhcCCCCCEEEEEe
Confidence            999999999999999999999999999999999999988  99999999999999888777665543   24544 444

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=6.5e-17  Score=137.17  Aligned_cols=134  Identities=12%  Similarity=0.160  Sum_probs=110.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~---g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      +|||||+|+ |+||+.+++.+...++++|++++|.+.  ..+..++   +.  +....+|+|++++++    +.++|+|+
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~--~~~~~~~~~~~~--~~~~~~~~~~~~ll~----~~~iD~v~   71 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSL--EKAKAFATANNY--PESTKIHGSYESLLE----DPEIDALY   71 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHHHHTTC--CTTCEEESSHHHHHH----CTTCCEEE
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCc--cccccchhcccc--ccceeecCcHHHhhh----ccccceee
Confidence            589999998 999999999999999999999999753  1222222   21  234568999999997    36899999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHH
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAI  177 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~  177 (300)
                      .+|++..+.+++..|+++|+||+|++| +.+.++.++|.++++++++.+.+.-|+  +..+..++++.+
T Consensus        72 I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~~~r~~~~~~~~k~li~  140 (184)
T d1ydwa1          72 VPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHPQEACMVREFAR  140 (184)
T ss_dssp             ECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGCHHHHHHHHHTT
T ss_pred             ecccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEEEEeeecChHHHHHHHHHH
Confidence            999999999999999999999999999 688999999999999999998877765  566666666553

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.6e-16  Score=132.39  Aligned_cols=121  Identities=14%  Similarity=0.230  Sum_probs=104.6

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      +|||||+|+ |.||+. +...+...++++|++++|++.  ..+..+.   ..++++.+++++++++      ++|+|+.+
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~l~~------~~D~V~I~   68 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTR--AKALPIC---ESWRIPYADSLSSLAA------SCDAVFVH   68 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSC--TTHHHHH---HHHTCCBCSSHHHHHT------TCSEEEEC
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechh--Hhhhhhh---hcccccccccchhhhh------hccccccc
Confidence            589999998 999976 788888899999999999764  2333333   3567888999999874      79999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                      |+|..+.+++..|+++|+||++++| +.+.++.++|.++++++++.+.+.-|+-.
T Consensus        69 tp~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~  123 (164)
T d1tlta1          69 SSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRF  123 (164)
T ss_dssp             SCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGG
T ss_pred             ccchhccccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcEEEEecccc
Confidence            9999999999999999999999999 78899999999999999998888766554

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=99.65  E-value=6e-16  Score=135.54  Aligned_cols=140  Identities=11%  Similarity=0.046  Sum_probs=112.3

Q ss_pred             CcceEEEEcCCchHHH-HHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEE
Q 022250           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      .++||+|+|| |.||+ .++..+...++++|++++|++. ..+...+..|+ ....+..|+|++++++    +.++|+|+
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i-~~~~~~~~~d~~ell~----~~~iD~V~  105 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGV-DPRKIYDYSNFDKIAK----DPKIDAVY  105 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTC-CGGGEECSSSGGGGGG----CTTCCEEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcc-ccccccccCchhhhcc----cccceeee
Confidence            4699999998 99997 4778888889999999999753 11222222222 1223456899999997    36899999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHHHHh
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISA  179 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a~~~  179 (300)
                      .+|++..+.+.+..|+++|+||++++| +.+.++..+|.++++++++.+++.-|  |+....-+.++.+..
T Consensus       106 I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~li~~~  176 (221)
T d1h6da1         106 IILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYNQFSAQLDHLAEAV  176 (221)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcEEEeeccccCHHHHHHHHHHHhh
Confidence            999999999999999999999999999 78999999999999999998888777  466777777777654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.64  E-value=8.2e-16  Score=129.29  Aligned_cols=123  Identities=14%  Similarity=0.057  Sum_probs=101.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      +|||+|+|+ |+||+.+++.+.+.+++||++++|++.  +. .      ...++..++++++++      .++|+|+.+|
T Consensus         3 kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~--~~-~------~~~~~~~~~~~~~~~------~~~D~Vvi~t   66 (170)
T d1f06a1           3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRA--TL-D------TKTPVFDVADVDKHA------DDVDVLFLCM   66 (170)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSS--CC-S------SSSCEEEGGGGGGTT------TTCSEEEECS
T ss_pred             cceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccc--cc-c------cccccccchhhhhhc------cccceEEEeC
Confidence            699999998 999999999999999999999999753  11 1      234556667777766      4799999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHH
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~  173 (300)
                      ++..+.+++..|+++|+++|++.+  ..+.++.++|.++|++++..++++..|..|..-+.
T Consensus        67 p~~~h~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~~~  127 (170)
T d1f06a1          67 GSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGRNPDFTASS  127 (170)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSCHHHHHHHH
T ss_pred             CCcccHHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCceEEEeceeccchhHHH
Confidence            999999999999999999986544  34567788999999999999898888888866443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=8.8e-16  Score=130.06  Aligned_cols=133  Identities=14%  Similarity=0.092  Sum_probs=105.9

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      ++||+|+|+ |.+|+. ++..+.+.++ ++|++++|++.  ..+..+.   ..++. .+|+|++++++    +.++|+|+
T Consensus         3 kirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ell~----~~~id~v~   72 (181)
T d1zh8a1           3 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFA---KMVGNPAVFDSYEELLE----SGLVDAVD   72 (181)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHH---HHHSSCEEESCHHHHHH----SSCCSEEE
T ss_pred             CcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccH--hhhhhhh---ccccccceeeeeecccc----ccccceee
Confidence            589999998 999986 7888887555 79999999753  2223332   23444 46899999997    36799999


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCCC--cHHHHHHHHHHH
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAI  177 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N~--SiGv~ll~~~a~  177 (300)
                      .+|+|+.+.+++..|+++|+||++++| +.+.++..+|.++++++++.+.+.-|+  +.-...+.++-+
T Consensus        73 I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~  141 (181)
T d1zh8a1          73 LTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQ  141 (181)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHH
Confidence            999999999999999999999999999 789999999999999999988887763  433334444433

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=99.59  E-value=3.1e-15  Score=124.84  Aligned_cols=118  Identities=12%  Similarity=0.155  Sum_probs=98.7

Q ss_pred             cceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc-ceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      .|||+|+|+ |+||+. +...+...++++++ ++|++.  ..+..+.   ..+++ ++|+|++++++     .++|+|+.
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~~~~~-~~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~-----~~iD~V~I   68 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLA---TRYRVSATCTDYRDVLQ-----YGVDAVMI   68 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHH---HHTTCCCCCSSTTGGGG-----GCCSEEEE
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EEECCH--HHHHHHH---HhcccccccccHHHhcc-----cccceecc
Confidence            389999998 999975 88888889999987 677642  2222332   34554 46889999986     57999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      +|+|..+.+++..|+++|+||++++| +.+.++.++|.++++++++.+.+.-|
T Consensus        69 ~tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~~  121 (167)
T d1xeaa1          69 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFN  121 (167)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECG
T ss_pred             cccccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999 78999999999999999999888766

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.54  E-value=2.8e-14  Score=125.72  Aligned_cols=143  Identities=12%  Similarity=0.106  Sum_probs=111.8

Q ss_pred             EeecCCCCCcceEEEEcCCch----HHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCcCCC---CcceecCHHHH
Q 022250           26 SCSTNPPQSNIKVIINGAVKE----IGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPL---EIPVMSDLTMV   97 (300)
Q Consensus        26 ~~~~~~~~~~ikV~V~Ga~Gr----MG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~~~~~g~~~~~---gv~v~~dl~~~   97 (300)
                      +.|+.|.+.+|||||+|+ |.    +++.++.++.+ .++++|++++|++.  ..+..++   ..+   ....|+|++++
T Consensus         7 ~~~~~~~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~--~~~~~~~---~~~~~~~~~~~~~~~~l   80 (237)
T d2nvwa1           7 KLSTVPSSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL--KSSLQTI---EQLQLKHATGFDSLESF   80 (237)
T ss_dssp             GGGSSGGGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH--HHHHHHH---HHTTCTTCEEESCHHHH
T ss_pred             ccccCCCCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCH--HHHHHHH---Hhcccccceeecchhhc
Confidence            456777777899999998 54    78888888865 57899999999753  2222222   122   34678999999


Q ss_pred             HhcccccCCccEEEEcCCchhHHHHHHHHHHcC------CCEEEeCC-CCCHHHHHHHHHHhhhC-CCeEEEcC--CCcH
Q 022250           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDKA-SMGCLIAP--TLSI  167 (300)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G------~~vVigTT-G~~~e~~~~L~~~a~~~-~i~iv~a~--N~Si  167 (300)
                      ++    +.++|+|+.+|++..+.+.+..|+++|      +||+|++| +.+.++.++|.++++++ ++++.++-  -|..
T Consensus        81 ~~----~~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~~v~~~~R~~p  156 (237)
T d2nvwa1          81 AQ----YKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQGRYNS  156 (237)
T ss_dssp             HH----CTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECGGGCCH
T ss_pred             cc----ccccceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeEEEEECCcCCH
Confidence            97    378999999999999999999999988      59999999 89999999999998764 67776654  4677


Q ss_pred             HHHHHHHHHHH
Q 022250          168 GSILLQQAAIS  178 (300)
Q Consensus       168 Gv~ll~~~a~~  178 (300)
                      +++-+.++.+.
T Consensus       157 ~~~~~k~~i~~  167 (237)
T d2nvwa1         157 VVGNILRIYES  167 (237)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77777776654

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.6e-14  Score=121.05  Aligned_cols=131  Identities=16%  Similarity=0.121  Sum_probs=101.4

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      +.++||+|+|+ |.||+.+++.+.+.++.+++++++.... +....      ..+. .+.|++++++    +.++|+|+.
T Consensus         5 ~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~-~~~~~------~~~~-~~~~~~e~l~----~~~iD~V~I   71 (172)
T d1lc0a1           5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSR-RELGS------LDEV-RQISLEDALR----SQEIDVAYI   71 (172)
T ss_dssp             CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECS-SCCCE------ETTE-EBCCHHHHHH----CSSEEEEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccch-HHHHH------hhcc-CcCCHHHHHh----CCCcchhhh
Confidence            44799999998 9999999999887666556665553210 11111      1122 2458999997    378999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEEEcCC--CcHHHHHHHHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAA  176 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv~a~N--~SiGv~ll~~~a  176 (300)
                      +|+++.+.+++..|+++|+||++++| +.+.++.++|.++++++++.+.+.-|  |+.....+.++.
T Consensus        72 ~tp~~~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i  138 (172)
T d1lc0a1          72 CSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLKNIFLKDQDIF  138 (172)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGTTHHHHHHHHH
T ss_pred             cccccccccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCeEEEecHHHhhHHHHHHHHHH
Confidence            99999999999999999999999999 78999999999999999998887766  455555555554

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=8.1e-10  Score=86.86  Aligned_cols=112  Identities=14%  Similarity=0.199  Sum_probs=95.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..||.|-|.||+.|+.+.+...+. +..+|+.+.+.+-|+.         -.++|+|++.+|++++    .++|+-+.|-
T Consensus         7 ~trVivQGiTG~~G~~ht~~m~~y-GT~iVaGVtPgkgG~~---------~~giPVf~tV~eAv~~----~~~d~SvIfV   72 (121)
T d1oi7a1           7 ETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGME---------VLGVPVYDTVKEAVAH----HEVDASIIFV   72 (121)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----SCCSEEEECC
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHh-CCceEeeeecCCCCcE---------EECCchHhhHHHHHHh----cCCeEEEEee
Confidence            369999999999999999988865 8999999988664443         2479999999999974    6899999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEE
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      +|..+.+-+..|+++|+++++.-| |....+..++.+.++++++.++
T Consensus        73 Pp~~a~dAi~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~~~~li  119 (121)
T d1oi7a1          73 PAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI  119 (121)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCEEe
Confidence            999999999999999999988877 8887777888888888776543

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.7e-09  Score=84.82  Aligned_cols=112  Identities=17%  Similarity=0.263  Sum_probs=96.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..||.|.|.||+-|+.+.+...+ -+..+|+.+.+.+.|+.         ..|+|+|++.+|++++    .++|+-+.|-
T Consensus         6 ~trVlvQGiTG~~G~~ht~~m~~-yGT~vVaGVtPgkgG~~---------~~giPVf~sV~eAv~~----~~~~~SvIfV   71 (119)
T d2nu7a1           6 NTKVICQGFTGSQGTFHSEQAIA-YGTKMVGGVTPGKGGTT---------HLGLPVFNTVREAVAA----TGATASVIYV   71 (119)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTEE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHH-hCCceEEEEccCCCCcc---------cCCCchhhHHHHHHHH----hCCCeEEEec
Confidence            46999999999999999998875 48999999998664443         3579999999999974    6889988899


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHhhhCCCeEE
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      +|..+.+-+..|+++|+++++.-| |....+.-++.+.++++++.++
T Consensus        72 Pp~~a~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~~~li  118 (119)
T d2nu7a1          72 PAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI  118 (119)
T ss_dssp             CGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cHHHHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence            999999999999999999988766 8887777888999998887654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.06  E-value=3.7e-10  Score=95.31  Aligned_cols=95  Identities=16%  Similarity=0.191  Sum_probs=72.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--------------cCcCCCCcceecCHHHHHhc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--------------DMEQPLEIPVMSDLTMVLGS  100 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--------------g~~~~~gv~v~~dl~~~l~~  100 (300)
                      |+||+|+|+ |||||.+++++.+++++|||++-|.... .....+.              .. ...++++..++.+++. 
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~g~~~~~~~-   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPN-YEAFIAHRRGIRIYVPQQSIKKF-EESGIPVAGTVEDLIK-   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCS-HHHHHHHHTTCCEECCGGGHHHH-HTTTCCCCCCHHHHHH-
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCc-HHHHHhcccCcceeccCccceec-cccceecCCchhhhhh-
Confidence            799999997 9999999999999999999999885321 0000000              00 2345566667777764 


Q ss_pred             ccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                           ++|+|||+|..-...+.++.++++|+.+|+-.+
T Consensus        77 -----~vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          77 -----TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             -----HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             -----cCCEEEECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence                 789999999988889999999999999998433

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.02  E-value=3.9e-10  Score=94.65  Aligned_cols=95  Identities=21%  Similarity=0.240  Sum_probs=68.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCc------------CCCCcceecCHHHHHh
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME------------QPLEIPVMSDLTMVLG   99 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~------------~~~gv~v~~dl~~~l~   99 (300)
                      |++||+|+|+ |||||.+.+++.+++++|+|++-|.... ..+..+.  +..            ...+.++..++.+++ 
T Consensus         1 M~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   77 (172)
T d2czca2           1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPD-FEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL-   77 (172)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH-
T ss_pred             CcEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCCh-HHHHHhhhcCceeecccccceeeecccCccccchhhhhh-
Confidence            7899999998 9999999999999999999999985321 1111111  000            011233334555555 


Q ss_pred             cccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEe
Q 022250          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (300)
                           .++|+|||+|..-...+.+...+++|+..|+-
T Consensus        78 -----~~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~  109 (172)
T d2czca2          78 -----EKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQ  109 (172)
T ss_dssp             -----TTCSEEEECCSTTHHHHHHHHHHHHTCEEEEC
T ss_pred             -----ccCCEEEECCCCCCCHHHHHHHHHcCCCEEEE
Confidence                 37899999999888899999999999888873

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.98  E-value=4.8e-09  Score=83.28  Aligned_cols=113  Identities=16%  Similarity=0.202  Sum_probs=92.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..||.|-|.||+-|+.+.+...+ -+..+||.+.+.+-|+.         -.|+|+|++.+|+.++    .++|+-+.|-
T Consensus        15 ~TrVivQGiTG~~G~~ht~~m~~-YGT~iVaGVtPgKgG~~---------~~giPVf~tV~eA~~~----~~~daSvIfV   80 (130)
T d1euca1          15 NTKVICQGFTGKQGTFHSQQALE-YGTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIYV   80 (130)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCeEEEEcCCCcHHHHHHHHHHH-hcCCeEEeeccCCCCcc---------ccCccchhhHHHHHHh----cCCcEEEEec
Confidence            36999999999999999999886 58999999988664433         2579999999999974    6799999999


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHh-hhCCCeEEEc
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFC-DKASMGCLIA  162 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT-G~~~e~~~~L~~~a-~~~~i~iv~a  162 (300)
                      +|..+.+-+..|+++|+++++.-| |....+.-++.+.+ ++.++. ++.
T Consensus        81 Pp~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~~-liG  129 (130)
T d1euca1          81 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR-LIG  129 (130)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE-EEC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHHHhCCCcE-EeC
Confidence            999999999999999999988877 88776666676544 554443 443

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=98.81  E-value=5.3e-09  Score=87.51  Aligned_cols=94  Identities=21%  Similarity=0.275  Sum_probs=66.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCc------------CCCCcceecCHHHHHhc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME------------QPLEIPVMSDLTMVLGS  100 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~------------~~~gv~v~~dl~~~l~~  100 (300)
                      |+||+|+|+ ||+||.+.+++.++++++++++-|.... .....+.  +..            ...++++..+..+++. 
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-   77 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPD-FEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD-   77 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH-
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcH-HHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc-
Confidence            689999998 9999999999999999999999885321 0000100  000            1112333345555553 


Q ss_pred             ccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEe
Q 022250          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (300)
                           ++|+|||+|..-...+.+...+++|+.+|+-
T Consensus        78 -----~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~  108 (171)
T d1cf2o1          78 -----EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ  108 (171)
T ss_dssp             -----TCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             -----CCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Confidence                 6899999998888888888889999888874

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.73  E-value=2.8e-08  Score=81.86  Aligned_cols=102  Identities=18%  Similarity=0.261  Sum_probs=72.5

Q ss_pred             CCcceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCHHHHHhcccccCCccEE
Q 022250           33 QSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVV  110 (300)
                      +.++||||+|+ |++|+. +.+.+...|.+||+++.+++..+... .++   .+.+++++ ++++++++. .+..+.|+|
T Consensus         2 ~kkirvaIIGa-G~ig~~~~~~~l~~~~~~el~avas~~~~~~~~-~~a---~~~~i~~~~~~~d~l~~~-~~~~~iDiV   75 (157)
T d1nvmb1           2 NQKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL-ARA---QRMGVTTTYAGVEGLIKL-PEFADIDFV   75 (157)
T ss_dssp             CSCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH-HHH---HHTTCCEESSHHHHHHHS-GGGGGEEEE
T ss_pred             CCCcEEEEEcC-cHHHHHHHHHHHhhCCcceEEEEEecchhccch-hhh---hhcCCcccccceeeeeec-ccccccCEE
Confidence            44799999995 999985 67888889999999999875432211 122   34677765 446666541 011368999


Q ss_pred             EEcCCchhHHHHH--HHHHHcCCCEEEeCCCC
Q 022250          111 IDFTDASTVYDNV--KQATAFGMRSVVYVPHI  140 (300)
Q Consensus       111 IDfT~p~~~~~~~--~~al~~G~~vVigTTG~  140 (300)
                      +++|++..+.++.  ..++++|+.|+.-|+.+
T Consensus        76 f~ATpag~h~~~~~~~~aa~~G~~VID~s~a~  107 (157)
T d1nvmb1          76 FDATSASAHVQNEALLRQAKPGIRLIDLTPAA  107 (157)
T ss_dssp             EECSCHHHHHHHHHHHHHHCTTCEEEECSTTC
T ss_pred             EEcCCchhHHHhHHHHHHHHcCCEEEEccccc
Confidence            9889888776644  66789999999988743

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.59  E-value=1.8e-07  Score=74.33  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=84.5

Q ss_pred             ceEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -.|+|+|++   +++|..+.+.+.+....++..+ .+..     .+      -.|++.|.|++++-      ..+|.++-
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pV-nP~~-----~~------i~G~~~y~sl~dlp------~~vDlvvi   70 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPV-NIKE-----EE------VQGVKAYKSVKDIP------DEIDLAII   70 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEE-CSSC-----SE------ETTEECBSSTTSCS------SCCSEEEE
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEe-ccCc-----cc------cCCeEeecchhhcC------CCCceEEE
Confidence            579999998   9999999999875434576653 3321     22      24788999999884      57999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEe-CCCCCH------HHHHHHHHHhhhCCCeEEEcCC
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVY-VPHIQL------ETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVig-TTG~~~------e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      |++++.+.+.++.|.+.|++-++- +.||++      +..++|.++|++++++ ++.||
T Consensus        71 ~vp~~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir-v~GPN  128 (129)
T d2csua1          71 VVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR-IIGPN  128 (129)
T ss_dssp             CSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE-EECSS
T ss_pred             ecChHHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE-EeCCC
Confidence            999999999999999999985544 447753      1245688999999997 55787

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.48  E-value=4.6e-07  Score=70.63  Aligned_cols=105  Identities=16%  Similarity=0.232  Sum_probs=83.1

Q ss_pred             eEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .|+|+|++   ++.|..+.+.+.+ .++++.. +.+..     .+      -.|.++|.+++++-      ..+|+++-|
T Consensus         3 sIAVvGaS~~~~k~g~~v~~~L~~-~g~~V~p-VnP~~-----~~------i~G~~~y~sl~~lp------~~~D~vvi~   63 (116)
T d1y81a1           3 KIALVGASKNPAKYGNIILKDLLS-KGFEVLP-VNPNY-----DE------IEGLKCYRSVRELP------KDVDVIVFV   63 (116)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHH-TTCEEEE-ECTTC-----SE------ETTEECBSSGGGSC------TTCCEEEEC
T ss_pred             EEEEEcccCCCCCcHHHHHHHHHH-CCCEEEE-Ecccc-----cc------ccCccccccchhcc------ccceEEEEE
Confidence            59999976   8899999999875 6788775 34321     22      24788999999885      478999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      ++|+...+.++.|++.|.+.+.-.+|...+   ++.+.++++|+. ++.||
T Consensus        64 vp~~~~~~~l~~~~~~g~k~v~~~~g~~~~---~~~~~a~~~gi~-vigpn  110 (116)
T d1y81a1          64 VPPKVGLQVAKEAVEAGFKKLWFQPGAESE---EIRRFLEKAGVE-YSFGR  110 (116)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEECTTSCCH---HHHHHHHHHTCE-EECSC
T ss_pred             eCHHHHHHHHHHHHhcCCceEEeccchhhH---HHHHHHHHcCCE-EEcCC
Confidence            999999999999999999999888875443   467788998886 44566

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.43  E-value=5.9e-07  Score=72.49  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+|+|+ |.||+.+++.+.+ .+++++. ++...  .....+.    ..+..+.++.+++.+      .+|+||-+.+
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~-~g~~v~~-~~~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRS-RGVEVVT-SLEGR--SPSTIER----ARTVGVTETSEEDVY------SCPVVISAVT   65 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHH-TTCEEEE-CCTTC--CHHHHHH----HHHHTCEECCHHHHH------TSSEEEECSC
T ss_pred             CEEEEEcH-HHHHHHHHHHHHH-CCCeEEE-EcCch--hHHHHHh----hhcccccccHHHHHh------hcCeEEEEec
Confidence            78999997 9999999999986 5888875 44322  1111111    123344567888874      7999998889


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      ++...+.+..+...-..+++-.+..+++...++.+.+++.  ..+-+|-+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~  113 (152)
T d1i36a2          66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKG--GFVDAAIM  113 (152)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEEC
T ss_pred             CchHHHHHHhhcccCCceeeccCcCCHHHHHHHHHHHhcc--CCCccccc
Confidence            9888998888888777788877777777778888888764  35555544

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=5.1e-07  Score=74.63  Aligned_cols=137  Identities=12%  Similarity=0.086  Sum_probs=83.2

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCC---cEEEEEEecCC-----CCcchhhhhcCcC--CCCcceecCHHHHHhcccc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHS-----VGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQ  103 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~-----~g~d~~~~~g~~~--~~gv~v~~dl~~~l~~~~~  103 (300)
                      .+++|+|+|+ |.+|+.+++.+.+.+.   +.++++.++..     .|.+......+..  .....-..+.+.+.+.+..
T Consensus         3 k~i~I~l~G~-G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (168)
T d1ebfa1           3 KVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKT   81 (168)
T ss_dssp             SEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTT
T ss_pred             CEEEEEEEeC-CHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhcc
Confidence            4699999998 9999999999876543   56788877421     1111110000000  0001111233332221122


Q ss_pred             cCCccEEEEcCCchhHHHHHHHHHHcCCCEEEeCCC-C--CHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHH
Q 022250          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH-I--QLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (300)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG-~--~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll  172 (300)
                      ....|+++|+|.-+...++...++++|+|||..--+ +  .-++.++|.+++++++ .+.|-++-.=|.-++
T Consensus        82 ~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTANK~~la~~~~~~~~L~~~a~~~~-~~~yEatVgaGiPiI  152 (168)
T d1ebfa1          82 SPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNG-FVYHEATVGAGLAAV  152 (168)
T ss_dssp             CSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCC-CEECGGGTTTTSHHH
T ss_pred             CCCceEEEEecCChHHHHHHHHHHHcCCeEEecCcccccCCHHHHHHHHHHHHHCC-cEEEeCeeeechhHH
Confidence            356789999998777888889999999999976442 2  3456778877777665 455555555554443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.36  E-value=4.6e-07  Score=73.49  Aligned_cols=113  Identities=17%  Similarity=0.210  Sum_probs=75.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+++|+ |+||+++++.+.+. +.++. +++++.  +...++.   .++|+.+..|.+++++      .+|+|+-+..
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~-~~~i~-v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQT-PHELI-ISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVILGIK   66 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTS-SCEEE-EECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEECSC
T ss_pred             CEEEEEec-cHHHHHHHHHHHhC-CCeEE-EEcChH--HhHHhhc---cccceeeechhhhhhh------ccceeeeecc
Confidence            78999998 99999999988754 56665 455432  2223332   3457778889999985      7999998888


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEE-cCCCcH
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI-APTLSI  167 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~-a~N~Si  167 (300)
                      |+...+.+. .+..+..+|.-++|.+.++   |++.... +.+++. -||...
T Consensus        67 p~~~~~vl~-~l~~~~~iis~~agi~~~~---l~~~l~~-~~~ivr~mPN~~~  114 (152)
T d2ahra2          67 PQLFETVLK-PLHFKQPIISMAAGISLQR---LATFVGQ-DLPLLRIMPNMNA  114 (152)
T ss_dssp             GGGHHHHHT-TSCCCSCEEECCTTCCHHH---HHHHHCT-TSCEEEEECCGGG
T ss_pred             hHhHHHHhh-hcccceeEecccccccHHH---HHhhhcc-cccchhhccchhh
Confidence            887766654 3556666665566888765   4444422 245553 377643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.36  E-value=1.7e-07  Score=75.88  Aligned_cols=112  Identities=16%  Similarity=0.204  Sum_probs=72.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||+++|+ |+||+.+++.+.+....++. ++|++.  +....+.   .++++.++++.+++       .++|+||-+..
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~-v~~r~~--~~~~~l~---~~~~~~~~~~~~~v-------~~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGA--EKRERLE---KELGVETSATLPEL-------HSDDVLILAVK   66 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSH--HHHHHHH---HHTCCEEESSCCCC-------CTTSEEEECSC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEE-EEeCCh--hHHHHhh---hhcccccccccccc-------cccceEEEecC
Confidence            79999998 99999999988766556665 567653  2233333   35678888877664       36899998888


Q ss_pred             chhHHHHHHHHHHcCCCEEEeC-CCCCHHHHHHHHHHhhhCCCeEE-EcCCCc
Q 022250          116 ASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCL-IAPTLS  166 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigT-TG~~~e~~~~L~~~a~~~~i~iv-~a~N~S  166 (300)
                      |....+.++.....+ ++|+.+ .|.+.++   |++..... .+++ .-||..
T Consensus        67 P~~~~~v~~~l~~~~-~~viS~~ag~~~~~---l~~~l~~~-~~iir~mpn~p  114 (152)
T d1yqga2          67 PQDMEAACKNIRTNG-ALVLSVAAGLSVGT---LSRYLGGT-RRIVRVMPNTP  114 (152)
T ss_dssp             HHHHHHHHTTCCCTT-CEEEECCTTCCHHH---HHHHTTSC-CCEEEEECCGG
T ss_pred             HHHHHHhHHHHhhcc-cEEeecccCCCHHH---HHHHhCcC-cceEeecccch
Confidence            887777665544444 455544 5888755   44444221 2333 346654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.35  E-value=6.8e-07  Score=70.51  Aligned_cols=87  Identities=14%  Similarity=0.103  Sum_probs=68.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      +.||+|+|| |++|+++++.+...++++++|++|.++  .|+.         -.|++++  +++++++.     ...+++
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~---------I~Gi~V~~~~~l~~~~~-----~~i~ia   67 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRP---------VRGGVIEHVDLLPQRVP-----GRIEIA   67 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE---------ETTEEEEEGGGHHHHST-----TTCCEE
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE---------ECCEEEecHHHHHHHHh-----hcccEE
Confidence            579999998 999999999887788999999999643  2322         2477886  56666654     568888


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEe
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVig  136 (300)
                      +-+.+.+...+.+..|.+.|++-+..
T Consensus        68 i~~i~~~~~~~I~d~l~~~gIk~I~~   93 (126)
T d2dt5a2          68 LLTVPREAAQKAADLLVAAGIKGILN   93 (126)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EEeCCHHHHHHHHHHHHHcCCCEEee
Confidence            87888888889999999999986654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.33  E-value=2.6e-06  Score=69.31  Aligned_cols=117  Identities=18%  Similarity=0.173  Sum_probs=78.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC-
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-  114 (300)
                      |||+++|. |.||+.+++.+.+ .++++. ++|++.  .....+.    +.+..+.++.+++.+      ++|++|-+- 
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~-~G~~V~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLK-AGYSLV-VSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITMLP   65 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEeh-hHHHHHHHHHHHH-CCCeEE-EEeCCc--chhHHHH----HhhhhhcccHHHHHh------CCCeEEEEcC
Confidence            68999997 9999999999885 688876 578653  2223332    346677789999885      789998765 


Q ss_pred             CchhHHHHHH------HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          115 DASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       115 ~p~~~~~~~~------~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      .++++.+.+.      ..++.|. +|+-.+..+++...++.+.++++++..+-+ .+|-|.
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~-iiid~sT~~p~~~~~~~~~~~~~g~~~vda-pv~gg~  124 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGT-VLIDMSSIAPLASREISDALKAKGVEMLDA-PVSGGE  124 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTC-EEEECSCCCHHHHHHHHHHHHTTTCEEEEC-CEESHH
T ss_pred             CHHHHHHHHhCCcchhhccCCCC-EEEECCCCCHHHHHHHHHHHHHcCCceecc-cccCCh
Confidence            4555555541      2223343 455555556677778888888888876654 455554

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.29  E-value=2.3e-06  Score=71.06  Aligned_cols=99  Identities=20%  Similarity=0.114  Sum_probs=68.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhh----cCcCCCCcceecCHHHHHhcccccCCc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVC----DMEQPLEIPVMSDLTMVLGSISQSKAR  107 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~~~~~----g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (300)
                      ||||+|+|+||-.|+.+++.+.++|++++..+....   ..|+...+..    +. ........++.+...      .++
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~   73 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGI-VDLPLQPMSDVRDFS------ADV   73 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTT-CCCBEEEESCGGGTC------TTC
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccc-cccccccchhhhhhh------ccc
Confidence            799999999999999999999999999999886532   3455443321    11 111122223333332      478


Q ss_pred             cEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      |+++=++++....+.+....+.|+.++--...|
T Consensus        74 dvvf~alp~~~s~~~~~~~~~~~~~vIDlSadf  106 (179)
T d2g17a1          74 DVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAF  106 (179)
T ss_dssp             CEEEECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             ceeeccccchhHHHHhhhhhhcCceeecccccc
Confidence            988866666677889999999999888655444

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.22  E-value=9e-07  Score=74.08  Aligned_cols=100  Identities=13%  Similarity=0.091  Sum_probs=64.7

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .+|||+|+|+||-.|+.+++.+.++|.+||+.+......|+...+..-.......+.....++...     .++|+++-+
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Dvvf~a   78 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADF-----SNVDAVFCC   78 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCG-----GGCSEEEEC
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhh-----cccceeeec
Confidence            479999999999999999999999999999988766667776654331111112222222222221     478999855


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      ++.....+.+....+.+ .+|.-..+
T Consensus        79 lp~~~s~~~~~~l~~~~-~~v~~~~~  103 (183)
T d2cvoa1          79 LPHGTTQEIIKGLPQEL-KIVDLSAD  103 (183)
T ss_dssp             CSSSHHHHHHHTSCSSC-EEEECSST
T ss_pred             cccchHHHHHHHHHhcC-cccccchh
Confidence            55666677776655554 44444333

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=2e-06  Score=71.70  Aligned_cols=98  Identities=16%  Similarity=0.094  Sum_probs=64.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ||||+|+|+||-.|+.+++.+.++|.+||+.+......|+...++.-.....-.....+.+++.+      +.|++.-++
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~------~~dvvf~a~   74 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK------NCDVLFTAL   74 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH------HCSEEEECC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhcc------ccceEEEcc
Confidence            79999999999999999999999999999999877777777664321000111111245566553      689888444


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      +.....+.+..  ..++.||-=...|
T Consensus        75 p~~~s~~~~~~--~~~~~VIDlSadf   98 (176)
T d1vkna1          75 PAGASYDLVRE--LKGVKIIDLGADF   98 (176)
T ss_dssp             STTHHHHHHTT--CCSCEEEESSSTT
T ss_pred             ccHHHHHHHHh--hccceEEecCccc
Confidence            44544555543  3566555434444

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.21  E-value=4.4e-06  Score=66.95  Aligned_cols=105  Identities=17%  Similarity=0.134  Sum_probs=82.3

Q ss_pred             ceEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -+|+|+|++   ++.|..+++.+.+ .++++.. +.+..     .+      -.|.++|.+++++-      ..+|+++-
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~-~g~~v~p-VnP~~-----~~------i~G~~~~~sl~dlp------~~iD~v~i   80 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLE-HGYDVYP-VNPKY-----EE------VLGRKCYPSVLDIP------DKIEVVDL   80 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHH-TTCEEEE-ECTTC-----SE------ETTEECBSSGGGCS------SCCSEEEE
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHH-CCCEEEE-ECCcc-----cc------cCCCcccccccccC------ccceEEEE
Confidence            469999987   8999999999875 5788765 34321     22      24778999999875      47999999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCC-CCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPH-IQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG-~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      |.+|+...+.++.|++.|++.|.=-+| +++    ++.+.++++|+.++ .||
T Consensus        81 ~vp~~~~~~~~~e~~~~g~k~v~~~~G~~~e----e~~~~a~~~gi~vi-g~~  128 (139)
T d2d59a1          81 FVKPKLTMEYVEQAIKKGAKVVWFQYNTYNR----EASKKADEAGLIIV-ANR  128 (139)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSEEEECTTCCCH----HHHHHHHHTTCEEE-ESC
T ss_pred             EeCHHHHHHHHHHHHHhCCCEEEEeccccCH----HHHHHHHHCCCEEE-cCC
Confidence            999999999999999999999987775 544    35667888888644 565

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.20  E-value=1.1e-05  Score=65.60  Aligned_cols=115  Identities=16%  Similarity=0.117  Sum_probs=76.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |.||+++|. |.||+.+++.+.+ .++++. ++|++.  .....+.    ..+.....++.+++.      .+|+++.+-
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~-~g~~v~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLK-AGYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAVQ------GADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHH-TTCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHHT------SCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHH-CCCeEE-EEECch--hhhhhhh----hhhccccchhhhhcc------ccCeeeecc
Confidence            579999997 9999999999885 578865 578653  2222222    345566678888884      789887655


Q ss_pred             Cch-hHHHHHHH---HHHc--CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCC
Q 022250          115 DAS-TVYDNVKQ---ATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (300)
Q Consensus       115 ~p~-~~~~~~~~---al~~--G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N  164 (300)
                      ... +..+.+..   .+..  .-.+|+-++..+++...++.+.+++.++..+=+|-
T Consensus        66 ~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv  121 (162)
T d3cuma2          66 PASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPV  121 (162)
T ss_dssp             SCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE
T ss_pred             cchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEeccc
Confidence            433 33333321   1121  12466777777788888899888888888776553

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.19  E-value=4.6e-06  Score=67.66  Aligned_cols=101  Identities=14%  Similarity=0.193  Sum_probs=65.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCC-c-ceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-I-PVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~g-v-~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |||+|+|+ |+||+.+++.+. ..++++++ +|++.  ..+....    +.+ + ...++++ ++      .++|+||.+
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~-~~g~~V~~-~d~~~--~~~~~a~----~~~~~~~~~~~~~-~~------~~~DiIila   64 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLR-RRGHYLIG-VSRQQ--STCEKAV----ERQLVDEAGQDLS-LL------QTAKIIFLC   64 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGG-GG------TTCSEEEEC
T ss_pred             CEEEEEee-cHHHHHHHHHHH-HCCCEEEE-EECCc--hHHHHHH----Hhhccceeeeecc-cc------ccccccccc
Confidence            78999998 999999999886 46899875 68653  1111111    122 2 2334554 44      479999988


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHHh
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFC  152 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~a  152 (300)
                      ++++...+.+......  ...+|+-+++........+.+..
T Consensus        65 vp~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~  105 (165)
T d2f1ka2          65 TPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW  105 (165)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS
T ss_pred             CcHhhhhhhhhhhhhhcccccceeeccccchHHHHHHHHhh
Confidence            8888777777766553  55677766666554444454443

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=2.2e-05  Score=63.23  Aligned_cols=93  Identities=9%  Similarity=-0.024  Sum_probs=59.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc---CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHH-HHHhcccccCCccEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVV  110 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVV  110 (300)
                      |.||+|+|+||-.|+.+++.+.++   |..+|+....+...|+... +.    .....+.+..+ +.+      .++|++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-~~----~~~~~~~~~~~~~~~------~~~Div   69 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-FG----GTTGTLQDAFDLEAL------KALDII   69 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-GG----TCCCBCEETTCHHHH------HTCSEE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-cc----CCceeeecccchhhh------hcCcEE
Confidence            569999999999999999876655   5677776544443333322 11    11222222212 233      378999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCC-EEEeCC
Q 022250          111 IDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~-vVigTT  138 (300)
                      +-+++.+...+....+.++|.. +||-..
T Consensus        70 F~a~~~~~s~~~~~~~~~~g~~~~VID~S   98 (146)
T d1t4ba1          70 VTCQGGDYTNEIYPKLRESGWQGYWIDAA   98 (146)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             EEecCchHHHHhhHHHHhcCCCeecccCC
Confidence            8556666678899999999986 444433

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=98.15  E-value=3.9e-06  Score=66.92  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=85.5

Q ss_pred             ceEEEEcCC---chHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -.|+|+|+|   ++.|..+.+.+.+ .++.... +.++..+.         .-.|.+.|.++.++-      ..+|+++-
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~-~g~~~~~-v~~~~~~~---------~i~g~~~~~~l~~i~------~~iD~v~v   76 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLRE-QGYRVLP-VNPRFQGE---------ELFGEEAVASLLDLK------EPVDILDV   76 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHH-TTCEEEE-ECGGGTTS---------EETTEECBSSGGGCC------SCCSEEEE
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhc-CCCCceE-EEeccccc---------eeeceecccchhhcc------CCCceEEE
Confidence            469999987   7899999998774 5776553 33222111         124788899998874      47899999


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHH
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv  169 (300)
                      |.+|+.+.+.++.|.+.|+..+.-.+|...+   ++.++|+++|+.++ .+| -+++
T Consensus        77 ~~p~~~v~~~v~~~~~~g~k~i~~q~G~~~~---e~~~~a~~~Gi~vV-~~~-C~~i  128 (136)
T d1iuka_          77 FRPPSALMDHLPEVLALRPGLVWLQSGIRHP---EFEKALKEAGIPVV-ADR-CLMV  128 (136)
T ss_dssp             CSCHHHHTTTHHHHHHHCCSCEEECTTCCCH---HHHHHHHHTTCCEE-ESC-CHHH
T ss_pred             eccHHHHHHHHHHHHhhCCCeEEEecCccCH---HHHHHHHHcCCEEE-cCC-ccHH
Confidence            9999999999999999999999988987654   46788999999876 333 5554

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.12  E-value=2.7e-06  Score=68.50  Aligned_cols=95  Identities=16%  Similarity=0.134  Sum_probs=65.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      +|||+|+|+||-.|+.+++.+.  .+|.++|..+..++..|+......     ....+ .+++....     .++|+++-
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~-----~~~~~-~~~~~~~~-----~~~d~vf~   70 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE-----SSLRV-GDVDSFDF-----SSVGLAFF   70 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT-----EEEEC-EEGGGCCG-----GGCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecc-----ccchh-ccchhhhh-----ccceEEEe
Confidence            4899999999999999999886  468999987766666666543211     11222 22222211     46898885


Q ss_pred             cCCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          113 FTDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      +++.+...+....+.++|+.||-=+..|
T Consensus        71 a~p~~~s~~~~~~~~~~g~~VID~Ss~f   98 (144)
T d2hjsa1          71 AAAAEVSRAHAERARAAGCSVIDLSGAL   98 (144)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEETTCTT
T ss_pred             cCCcchhhhhccccccCCceEEeechhh
Confidence            5566667889999999999887544433

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.09  E-value=3.4e-06  Score=70.83  Aligned_cols=125  Identities=15%  Similarity=0.219  Sum_probs=78.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC--------CCcchhhhhcCcCCCCcceecCHHHHHhcccccCC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      |.||+|+|+ |.||.+++..+.+ .+.++. +++++.        .+.....+-+..-+-.+.+++|++++++      +
T Consensus         7 m~KI~ViGa-G~wGtAlA~~La~-~g~~V~-l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~------~   77 (189)
T d1n1ea2           7 LNKAVVFGS-GAFGTALAMVLSK-KCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN------G   77 (189)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHT-TEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT------T
T ss_pred             eceEEEECC-CHHHHHHHHHHHH-cCCeEE-EEEecHHHHHHHhhcccccccccccccccccccchhhhhccC------C
Confidence            568999998 9999999998774 455543 444321        0111111112212335677899999984      7


Q ss_pred             ccEEEEcCCchhHHHHHHH--------HHHcCCCEEEeCCCCCHHHHHH----HHHHhhhCCCeEEEcCCCcHH
Q 022250          107 RAVVIDFTDASTVYDNVKQ--------ATAFGMRSVVYVPHIQLETVSA----LSAFCDKASMGCLIAPTLSIG  168 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~--------al~~G~~vVigTTG~~~e~~~~----L~~~a~~~~i~iv~a~N~SiG  168 (300)
                      +|+||-..+.....+.++.        .+..+.++|+.|-|+..+....    |.+......+.++-.|||+--
T Consensus        78 ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~E  151 (189)
T d1n1ea2          78 AEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIE  151 (189)
T ss_dssp             CSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHH
T ss_pred             CCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHH
Confidence            8999866666555555543        3567889998887886442222    333333444778889999754

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.89  E-value=2e-05  Score=66.24  Aligned_cols=36  Identities=33%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhc----CCcEEEEEEecC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDSH   70 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~~   70 (300)
                      |+|||||+|. ||+||.+.+.+.++    ++++++++.|..
T Consensus         1 M~ikigINGF-GRIGR~vlR~~~~~~~~~~~i~iv~Ind~~   40 (190)
T d1k3ta1           1 MPIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMN   40 (190)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTTCBTTTEEEEEEEESC
T ss_pred             CCeEEEEECC-ChHHHHHHHHHHHcCCCCCCeEEEEEecCC
Confidence            7899999998 99999999988654    578999998864

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.85  E-value=5.2e-05  Score=61.13  Aligned_cols=91  Identities=13%  Similarity=-0.030  Sum_probs=59.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      |||+|+|+||-.|+.+++.+.+   .|..+|+....+...|+.. .+.   .. ...+.  .+. +.+      .++|+|
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~-~~~---~~-~~~~~~~~~~-~~~------~~~Dvv   68 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAP-NFG---KD-AGMLHDAFDI-ESL------KQLDAV   68 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCC-CSS---SC-CCBCEETTCH-HHH------TTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccccc-ccC---Cc-ceeeecccch-hhh------ccccEE
Confidence            7899999999999999998764   4568888665544333321 111   11 11222  232 233      478999


Q ss_pred             EEcCCchhHHHHHHHHHHcCCC-EEEeCC
Q 022250          111 IDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~-vVigTT  138 (300)
                      +=+++.+...+.+..+++.|+. +||=-.
T Consensus        69 F~alp~~~s~~~~~~l~~~g~~~~VIDlS   97 (147)
T d1mb4a1          69 ITCQGGSYTEKVYPALRQAGWKGYWIDAA   97 (147)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred             EEecCchHHHHHhHHHHHcCCceEEEeCC
Confidence            8555666678899999999975 555433

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.80  E-value=0.00012  Score=58.51  Aligned_cols=120  Identities=14%  Similarity=0.089  Sum_probs=81.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc-ce-------ecCHHHHHhcccccCCc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PV-------MSDLTMVLGSISQSKAR  107 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v-------~~dl~~~l~~~~~~~~~  107 (300)
                      -||.|+|+ |+||+.+++.+.+ .++++ -++|++.  ..+..+.   ...+. .+       ....++.+      ...
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~-~g~~V-~v~dr~~--~~a~~l~---~~~~~~~~~~~~~~~~~~~~~~i------~~~   68 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTD-SGIKV-TVACRTL--ESAKKLS---AGVQHSTPISLDVNDDAALDAEV------AKH   68 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHT-TTCEE-EEEESCH--HHHHHHH---TTCTTEEEEECCTTCHHHHHHHH------TTS
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCEE-EEEECCh--HHHHHHH---hcccccccccccccchhhhHhhh------hcc
Confidence            58999998 9999999998874 57885 4788753  2333333   11221 11       12334444      467


Q ss_pred             cEEEEcCCchhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHH
Q 022250          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~l  171 (300)
                      |++|..++.......+..+.+.+++++.  .....+....+.+.+++.+..++...........
T Consensus        69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  130 (182)
T d1e5qa1          69 DLVISLIPYTFHATVIKSAIRQKKHVVT--TSYVSPAMMELDQAAKDAGITVMNEIGYSAMAKL  130 (182)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHTCEEEC--SSCCCHHHHHTHHHHHHTTCEEECSCBCCHHHHH
T ss_pred             ceeEeeccchhhhHHHHHHHhhccceee--cccCcHHHHHHHHHhccccceeehhhhcchhhhh
Confidence            8999888888888899999999999874  3333345677888888887777766666655443

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=97.73  E-value=2.3e-05  Score=64.69  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=31.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      ++||||+|+ ||+||.+.+.+.+.++++++++-|+
T Consensus         1 kikIgINGF-GRIGR~v~R~~~~~~~~~ivaINd~   34 (169)
T d1u8fo1           1 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDP   34 (169)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECS
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHCCCcEEEEecCC
Confidence            589999998 9999999999999999999998884

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=6.5e-05  Score=61.73  Aligned_cols=34  Identities=38%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .|||||+|. ||+||.+.+.+.+.++++++++=|.
T Consensus         1 tikigINGF-GRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             CeEEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            389999998 9999999999999999999998774

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.69  E-value=4e-05  Score=61.91  Aligned_cols=94  Identities=13%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .||+|+|+||-.|+++++.+.++  |..++.....+...|+.....     ..........+...      .+.|+++-.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~-----~~~~~~~~~~~~~~------~~~d~~f~~   70 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFK-----DQDITIEETTETAF------EGVDIALFS   70 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEET-----TEEEEEEECCTTTT------TTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccccccc-----CCcccccccchhhh------hhhhhhhhc
Confidence            58999999999999999999988  667777665554445443221     11222233333333      467888766


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG~  140 (300)
                      +.+....+.+..+.+.|+.||-=...|
T Consensus        71 ~~~~~s~~~~~~~~~~~~~VIDlSsdf   97 (154)
T d2gz1a1          71 AGSSTSAKYAPYAVKAGVVVVDNTSYF   97 (154)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             cCccchhhHHhhhccccceehhcChhh
Confidence            677777888899999999999765543

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=97.59  E-value=4.2e-05  Score=63.21  Aligned_cols=33  Identities=39%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      +||+|+|. ||+||.+.+.+.+.++++++++=|.
T Consensus         2 ikIgINGf-GRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           2 VKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEECC-CHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            79999998 9999999999999999999998764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.57  E-value=0.00034  Score=56.19  Aligned_cols=106  Identities=16%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |.||+|+|+ |.||..+++.+.+. ...++.+ +|++.  ... +.+   .+.+.  ...++.++...     .++|+||
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~-~D~~~--~~~-~~a---~~~~~~~~~~~~~~~~~~-----~~~dlIi   67 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYG-YDINP--ESI-SKA---VDLGIIDEGTTSIAKVED-----FSPDFVM   67 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEE-ECSCH--HHH-HHH---HHTTSCSEEESCGGGGGG-----TCCSEEE
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEE-EECCh--HHH-HHH---HHhhcchhhhhhhhhhhc-----ccccccc
Confidence            357999998 99999999998754 3467665 67642  111 111   12222  23445555443     4789999


Q ss_pred             EcCCchhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHHhh
Q 022250          112 DFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCD  153 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~a~  153 (300)
                      -+++|+...+.+.....+  .-.+|+-+++-...-.+.+.+...
T Consensus        68 la~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~  111 (171)
T d2g5ca2          68 LSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG  111 (171)
T ss_dssp             ECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred             ccCCchhhhhhhhhhhccccccccccccccccHHHHHHHHHhhc
Confidence            899998888877665543  334666555443333344554433

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.56  E-value=0.00018  Score=59.06  Aligned_cols=126  Identities=16%  Similarity=0.083  Sum_probs=74.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh--------hhcCc-CCCCcceecCHHHHHhcccccCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM--------VCDME-QPLEIPVMSDLTMVLGSISQSKA  106 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~--------~~g~~-~~~gv~v~~dl~~~l~~~~~~~~  106 (300)
                      |||+|+|+ |.||.+++..+.+. +.++. ++.+...-+-+..        ..+.. ....+..++|++++++      +
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~-g~~V~-l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~   71 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDN-GNEVR-IWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE------N   71 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHH-CCEEE-EECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT------T
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEE-EEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHh------c
Confidence            79999998 99999999988753 45544 2322100000000        00000 1112344678999884      7


Q ss_pred             ccEEEEcCCchhHHHHHHHHHH--cCCCEEEeCCCCCHH------HHHHHHHHhh--hCCCeEEEcCCCcHHHH
Q 022250          107 RAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHIQLE------TVSALSAFCD--KASMGCLIAPTLSIGSI  170 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~--~G~~vVigTTG~~~e------~~~~L~~~a~--~~~i~iv~a~N~SiGv~  170 (300)
                      +|+||..+++..+.+.+.....  .+.++|+-|.|+.+.      ..+.+.+...  .....++-.|||+--+.
T Consensus        72 ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~  145 (180)
T d1txga2          72 AEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVA  145 (180)
T ss_dssp             CSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHH
T ss_pred             cchhhcccchhhhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHH
Confidence            8999988888888777776544  456777777775211      1123333332  22356677899987643

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=97.54  E-value=0.00033  Score=63.30  Aligned_cols=105  Identities=11%  Similarity=0.099  Sum_probs=78.3

Q ss_pred             CchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCcCCCCcceecCHHHHHhcccccCCccEEEEcC------Cc
Q 022250           44 VKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DA  116 (300)
Q Consensus        44 ~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT------~p  116 (300)
                      .||||..+++.   .+..++++ +|.+..|+++++.+ |.  ..++|++.|++++++     ..++++|.=.      .|
T Consensus        25 ~gKTa~gLlRy---~~~~~v~~-V~~~~aG~~~~~~l~g~--~~~IPIv~s~~~A~~-----~g~~~liiGvAp~GG~lp   93 (338)
T d2g0ta1          25 HAKTTYGLLRH---SRLFKPVC-VVAEHEGKMASDFVKPV--RYDVPVVSSVEKAKE-----MGAEVLIIGVSNPGGYLE   93 (338)
T ss_dssp             GGHHHHHHHHH---CSSEEEEE-EESSCTTCBGGGTCC-C--CSCCBEESSHHHHHH-----TTCCEEEECCCSCCHHHH
T ss_pred             CchHhhhHHhc---cCCCeEEE-EECCCCCCchhhhcCCC--CCCCCEeCCHHHHHh-----cCCCEEEEEecccCCcCC
Confidence            47888777764   45566665 45566899998854 43  568999999999997     6899888643      27


Q ss_pred             hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEE
Q 022250          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (300)
Q Consensus       117 ~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv  160 (300)
                      +.-.+.+..|+++|+++|.|---+ ..+..++.++|+++|+.++
T Consensus        94 ~~w~~~i~~Al~~Gl~IvsGLH~~-L~ddpel~~~A~~~g~~i~  136 (338)
T d2g0ta1          94 EQIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGTRII  136 (338)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHHcCCeEEecchhh-hccCHHHHHHHHhCCCEEE
Confidence            888899999999999999986533 1234578888999887765

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.52  E-value=0.00021  Score=58.54  Aligned_cols=33  Identities=33%  Similarity=0.367  Sum_probs=30.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .||||+|. ||+||.+.+.+.+.++++++++=|+
T Consensus         1 tkigINGf-GRIGR~v~R~~~~~~~~~iv~INd~   33 (166)
T d2b4ro1           1 TKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDP   33 (166)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECT
T ss_pred             CeEEEECC-CHHHHHHHHHHhhCCCcEEEEECCC
Confidence            48999998 9999999999999999999998775

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.49  E-value=0.00022  Score=58.76  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=28.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhc--CCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~   69 (300)
                      |||||+|. ||+||.+.+.+.+.  +++++|++=|+
T Consensus         1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~   35 (172)
T d1rm4a1           1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDT   35 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence            79999998 99999999988754  44999987764

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=97.46  E-value=0.00012  Score=60.56  Aligned_cols=34  Identities=32%  Similarity=0.444  Sum_probs=29.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh---cCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~   69 (300)
                      .|||+|+|. ||+||.+.+.+.+   .++++++++=|+
T Consensus         1 tikigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             CeEEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            389999998 9999999998875   578999998774

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.43  E-value=0.00082  Score=53.03  Aligned_cols=91  Identities=12%  Similarity=0.152  Sum_probs=63.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |.||+|+|+.|.||+.+++.+.+ .++++.. +|++..                   .+.++.+      ..+|.++..+
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~-~G~~V~~-~d~~~~-------------------~~~~~~~------~~~~~v~~~~   61 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRA-SGYPISI-LDREDW-------------------AVAESIL------ANADVVIVSV   61 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHT-TTCCEEE-ECTTCG-------------------GGHHHHH------TTCSEEEECS
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHH-cCCCcEe-cccccc-------------------cccchhh------hhcccccccc
Confidence            67999999559999999999874 5787664 665420                   1123344      4789998888


Q ss_pred             CchhHHHHHHHHHHcC--CCEEEeCCCCCHHHHHHHHHHh
Q 022250          115 DASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFC  152 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G--~~vVigTTG~~~e~~~~L~~~a  152 (300)
                      ++....+.+...+..-  -.+|+-++....+..+++.+..
T Consensus        62 ~~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~  101 (152)
T d2pv7a2          62 PINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH  101 (152)
T ss_dssp             CGGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC
T ss_pred             chhhheeeeecccccccCCceEEEecccCHHHHHHHHHHc
Confidence            8888888887776652  2466666666666666666554

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.41  E-value=0.00098  Score=53.98  Aligned_cols=119  Identities=12%  Similarity=0.138  Sum_probs=67.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCc--CCCCcceecCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME--QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~--g~~--~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||+|+|. |+||..+++.+.+ .++++. ++|++.  ..+..+.  +..  .........+.+.++...   ..++.++
T Consensus         2 MkIGvIGl-G~MG~~ma~~L~~-~G~~V~-~~dr~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   73 (178)
T d1pgja2           2 MDVGVVGL-GVMGANLALNIAE-KGFKVA-VFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKAL   73 (178)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEE
T ss_pred             CEEEEEee-hHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHHHcCCccccccchhhhhhhhHHHHhc---ccceEEE
Confidence            68999997 9999999999885 578875 588642  1222221  100  011223344555555421   3456666


Q ss_pred             EcCCchhH-HH---HHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcC
Q 022250          112 DFTDASTV-YD---NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (300)
Q Consensus       112 DfT~p~~~-~~---~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~  163 (300)
                      +...+... ..   .+...+..|. +++-++..+++...++.+..++.++..+-+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~-iii~~st~~~~~~~~~~~~l~~~~~~~ldap  128 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGD-ILVDTGNAHFKDQGRRAQQLEAAGLRFLGMG  128 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTC-EEEECCCCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EeecCcchhhhhhhhhhhhccccc-eecccCccchhHHHHHHHHHhhcceeEeccc
Confidence            55554433 33   3333444444 4444444445666677777777777665554

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.40  E-value=0.00039  Score=56.66  Aligned_cols=125  Identities=10%  Similarity=0.117  Sum_probs=73.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc-CCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -+|+++|. |.||..+++.+.+ .+++++ ++|++.  ..+.++.... .........+.+++.+.   -..+|++|-+.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMND-HGFVVC-AFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSK---LKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHH-TTCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHH---BCSSCEEEECS
T ss_pred             CcEEEEeE-hHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHHHhccccccccchhhhhhhhhh---hcccceEEEec
Confidence            57999998 9999999999985 578876 578653  2222232100 01111122333333321   14678777554


Q ss_pred             -CchhHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          115 -DASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       115 -~p~~~~~~~~~al~---~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                       .++.+.+.....+.   .|. +|+-++..++++..++.+.+++.++..+ .+.+|=|..
T Consensus        75 ~~~~~v~~v~~~l~~~~~~g~-iiid~sT~~~~~~~~~~~~~~~~g~~~l-dapvsGg~~  132 (176)
T d2pgda2          75 KAGQAVDNFIEKLVPLLDIGD-IIIDGGNSEYRDTMRRCRDLKDKGILFV-GSGVSGGED  132 (176)
T ss_dssp             CTTHHHHHHHHHHHHHCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEE-EEEEESHHH
T ss_pred             CchHHHHHHHHHHHhccccCc-EEEecCcchhHHHHHHHHHHHhcCCcee-ccccccCcc
Confidence             34455554444433   333 6666666666777778777788887655 556666653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00031  Score=55.71  Aligned_cols=98  Identities=15%  Similarity=0.156  Sum_probs=59.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCc-CCCCcceecCHHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~~~~~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |||+|+|+ |.||..++..+.+ .++++..+ ++.. ...... ..+.. ......+..+..+.+      ..+|++|.+
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~-~G~~V~~~-~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~D~iii~   70 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCK-QGHEVQGW-LRVPQPYCSVN-LVETDGSIFNESLTANDPDFL------ATSDLLLVT   70 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEEE-CSSCCSEEEEE-EECTTSCEEEEEEEESCHHHH------HTCSEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-CCCceEEE-EcCHHHhhhhc-cccCCccccccccccchhhhh------cccceEEEe
Confidence            79999998 9999999998875 57777654 4322 111110 01100 011122233334444      378999988


Q ss_pred             CCchhHHHHHHHHHH---cCCCEEEeCCCCCHH
Q 022250          114 TDASTVYDNVKQATA---FGMRSVVYVPHIQLE  143 (300)
Q Consensus       114 T~p~~~~~~~~~al~---~G~~vVigTTG~~~e  143 (300)
                      +.+..+.+.++.+..   .+..+|+...|+..+
T Consensus        71 vka~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          71 LKAWQVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             SCGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             ecccchHHHHHhhccccCcccEEeeccCcccHH
Confidence            887777766665554   456688777787543

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=97.34  E-value=0.00016  Score=59.32  Aligned_cols=32  Identities=44%  Similarity=0.497  Sum_probs=28.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |||+|+|+ ||+||.+.+++. .++++++++=|.
T Consensus         1 ikigINGf-GRIGR~~~R~l~-~~~i~iv~INd~   32 (168)
T d2g82a1           1 MKVGINGF-GRIGRQVFRILH-SRGVEVALINDL   32 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCCEEEEECS
T ss_pred             CEEEEECC-cHHHHHHHHHHh-cCCCEEEEECCC
Confidence            79999998 999999999776 568999998774

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00043  Score=57.22  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=28.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |.||+|.|+||.+|+.+++.+.+ .++++.++..
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~-~g~~V~~~~R   35 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVR   35 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEEc
Confidence            67999999999999999998885 4799988764

>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.28  E-value=0.0026  Score=54.41  Aligned_cols=138  Identities=20%  Similarity=0.197  Sum_probs=90.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc------C----------------CcEEEEEEec--CCCCcchhhhhcCc-------
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA------R----------------GMEVAGAIDS--HSVGEDIGMVCDME-------   83 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~------~----------------~~eLvg~vd~--~~~g~d~~~~~g~~-------   83 (300)
                      ++||+|+|- |+-.+.+++-+.-.      .                |+|+|+.+|-  .+.|+|+.+..-..       
T Consensus         2 kIrVaIvGv-GNcASslvqGieyyk~~~~~~~v~Glm~~~iggY~v~DIe~VaafDVD~~KVGkdlseAi~a~pN~t~~~   80 (243)
T d1gr0a1           2 EVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIKI   80 (243)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCCCC
T ss_pred             ceEEEEEcc-hHHHHHHHHHHHHHhcCCCccccccceecccCCccccceEEEEEEecCccccCCcHHHHHhcCCCCceee
Confidence            699999998 99999999988521      1                4499999984  56788876543110       


Q ss_pred             ---CCCCccee-----------------------cCHHHHHhcccccCCccEEEEcCC---chhHHHHHHHHHHcCCCEE
Q 022250           84 ---QPLEIPVM-----------------------SDLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus        84 ---~~~gv~v~-----------------------~dl~~~l~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~vV  134 (300)
                         .+.|+.++                       .|+-+.|.    +.++||+|.+-+   -+++.-++..|+++|+..|
T Consensus        81 ~d~p~~gv~V~~G~~LDg~~~~~~~~~~~~~~~~~dvv~~Lk----~~~~dVlvnylPvGse~A~~~YA~~al~Ag~aFV  156 (243)
T d1gr0a1          81 ADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALK----EAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFV  156 (243)
T ss_dssp             SCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHH----HTTCSEEEECCCTTCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCCCEEeccCCccccchhhhcccCCCCccHHHHHHHHH----hcCCCEEEEecCCCcHHHHHHHHHHHHHcCceEE
Confidence               12233222                       12333443    468999999864   5677889999999999999


Q ss_pred             EeCCCCCHHHHHHHHHHhhhCCCeEE----EcCCCcHHHHH-HHHHHHHh
Q 022250          135 VYVPHIQLETVSALSAFCDKASMGCL----IAPTLSIGSIL-LQQAAISA  179 (300)
Q Consensus       135 igTTG~~~e~~~~L~~~a~~~~i~iv----~a~N~SiGv~l-l~~~a~~~  179 (300)
                      -++|-|-..+ .+..+..+++|+|++    .||| |-|+.+ +-++++.+
T Consensus       157 N~iP~fIAsd-p~w~~kF~e~glpivGDDikspn-~AgvviDaiR~aKla  204 (243)
T d1gr0a1         157 NALPVFIASD-PVWAKKFTDARVPIVGDDIKSPN-SAGVIIDAVRAAKIA  204 (243)
T ss_dssp             ECSSCCSTTS-HHHHHHHHHHTCEEEESSBCCHH-HHHHHHHHHHHHHHH
T ss_pred             ecccccccCC-HHHHHHHHHcCCcEEcccccccc-cchhHHHHHHHHHHH
Confidence            9999753221 234566677889987    2443 445432 33444444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.25  E-value=0.0013  Score=52.68  Aligned_cols=92  Identities=15%  Similarity=0.169  Sum_probs=57.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cCc-CCCCcceecCHHHHHhccccc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DME-QPLEIPVMSDLTMVLGSISQS  104 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~----------g~~-~~~gv~v~~dl~~~l~~~~~~  104 (300)
                      .||+|+|+ |.||..++..+.+ .++++. ++|+..  .....+.          +.. ......+++|+++++.     
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~-~G~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----   71 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLAL-KGQSVL-AWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK-----   71 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT-----
T ss_pred             CEEEEECc-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc-----
Confidence            58999998 9999999998875 578766 566431  1111000          000 1122345678999884     


Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHc---CCCEEEeCCC
Q 022250          105 KARAVVIDFTDASTVYDNVKQATAF---GMRSVVYVPH  139 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~---G~~vVigTTG  139 (300)
                       ++|++|.++++..+.+.+.....+   +. +|+...|
T Consensus        72 -~aD~iii~v~~~~~~~~~~~i~~~l~~~~-~iv~~~g  107 (184)
T d1bg6a2          72 -DADVILIVVPAIHHASIAANIASYISEGQ-LIILNPG  107 (184)
T ss_dssp             -TCSEEEECSCGGGHHHHHHHHGGGCCTTC-EEEESSC
T ss_pred             -CCCEEEEEEchhHHHHHHHHhhhccCCCC-EEEEeCC
Confidence             799999888877776666555443   44 3444444

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.22  E-value=0.0017  Score=50.09  Aligned_cols=117  Identities=14%  Similarity=0.267  Sum_probs=66.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||.|+|+ |++|+.+++.+.+ .+.+++ ++|.++  +.+..+.   ...++.+.    .|.+-+.+ . .-.++|+++
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~-~g~~v~-vid~d~--~~~~~~~---~~~~~~vi~Gd~~~~~~l~~-~-~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSE-KGHDIV-LIDIDK--DICKKAS---AEIDALVINGDCTKIKTLED-A-GIEDADMYI   70 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH---HHCSSEEEESCTTSHHHHHH-T-TTTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCCcc-eecCCh--hhhhhhh---hhhhhhhccCcccchhhhhh-c-Chhhhhhhc
Confidence            79999998 9999999998874 577765 467542  1112121   12344332    23333221 1 124688888


Q ss_pred             EcCCchhH-HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250          112 DFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus       112 DfT~p~~~-~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                      -.|..+.. .-....+.+.|.+-++...- +++..+.    .++.|+..++.|.+-.
T Consensus        71 ~~t~~d~~N~~~~~~~k~~~~~~iI~~~~-~~~~~~~----l~~~G~d~vi~p~~~~  122 (132)
T d1lssa_          71 AVTGKEEVNLMSSLLAKSYGINKTIARIS-EIEYKDV----FERLGVDVVVSPELIA  122 (132)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCCCEEEECS-STTHHHH----HHHTTCSEEECHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHcCCceEEEEec-CHHHHHH----HHHCCCCEEECHHHHH
Confidence            77655433 33344556777776665433 2333333    3556677788787533

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.0011  Score=54.38  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=28.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHh--cCCcEEEEEEec
Q 022250           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDS   69 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~   69 (300)
                      ||||+|+ ||+||.+.+.+.+  .+++++|++=|.
T Consensus         2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            8999998 9999999998875  568999998664

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=3.8e-05  Score=61.13  Aligned_cols=90  Identities=8%  Similarity=-0.016  Sum_probs=51.0

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCch
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~  117 (300)
                      |+++|+ |+||+.+++.+.+  ..++..+++++.  ..+..+.   ...+.. +.+++++.      ..+|+|+-+.+|+
T Consensus         2 IgfIG~-G~mg~~l~~~L~~--~~~~~~v~~R~~--~~~~~l~---~~~~~~-~~~~~~~~------~~~DiVil~v~d~   66 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKD--RYEIGYILSRSI--DRARNLA---EVYGGK-AATLEKHP------ELNGVVFVIVPDR   66 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHH---HHTCCC-CCSSCCCC------C---CEEECSCTT
T ss_pred             EEEEeC-cHHHHHHHHHHHh--CCCEEEEEeCCh--hhhcchh---hccccc-ccchhhhh------ccCcEEEEeccch
Confidence            689997 9999999997743  566666777653  2233333   223332 44566665      4789999777777


Q ss_pred             hHHHHHHHHHHcCCCEEEeCCCCCH
Q 022250          118 TVYDNVKQATAFGMRSVVYVPHIQL  142 (300)
Q Consensus       118 ~~~~~~~~al~~G~~vVigTTG~~~  142 (300)
                      ...+.+......++-+|-.+++.+.
T Consensus        67 ~i~~v~~~l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          67 YIKTVANHLNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             THHHHHTTTCCSSCCEEECCSSSCG
T ss_pred             hhhHHHhhhcccceeeeecccchhh
Confidence            7776665443345544443345543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.0022  Score=50.90  Aligned_cols=114  Identities=17%  Similarity=0.086  Sum_probs=63.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc-CC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF-TD  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf-T~  115 (300)
                      ||+++|. |+||..+++.+.+ .+..++  +++..  .....+.   ...+. ...+.+.+.       ++|++|-. ..
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~-~g~~~~--~~~~~--~~~~~~~---~~~~~-~~~~~~~~~-------~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLAR-RFPTLV--WNRTF--EKALRHQ---EEFGS-EAVPLERVA-------EARVIFTCLPT   64 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHT-TSCEEE--ECSST--HHHHHHH---HHHCC-EECCGGGGG-------GCSEEEECCSS
T ss_pred             eEEEEeH-HHHHHHHHHHHHh-CCCEEE--EeCCH--HHHHHHH---HHcCC-ccccccccc-------ceeEEEecccc
Confidence            7999997 9999999999974 466543  44322  1111211   11111 123333332       46666533 33


Q ss_pred             chhHHHHHHHHHHcC--CCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHH
Q 022250          116 ASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (300)
Q Consensus       116 p~~~~~~~~~al~~G--~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiG  168 (300)
                      ++.+.......++..  -.+++-++..++++..++.+.+++.++..+=+| +|=|
T Consensus        65 ~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldap-VsGg  118 (156)
T d2cvza2          65 TREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAP-VSGG  118 (156)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECC-EESH
T ss_pred             hhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEecc-ccCc
Confidence            444444444443332  345555666667777888888888888766543 4434

>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1419
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.0047  Score=54.16  Aligned_cols=143  Identities=15%  Similarity=0.178  Sum_probs=86.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh--------------------cCCcEEEEEEec--CCCCcchhhhh------------
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK--------------------ARGMEVAGAIDS--HSVGEDIGMVC------------   80 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~--------------------~~~~eLvg~vd~--~~~g~d~~~~~------------   80 (300)
                      ||||+|+|. |..++.++.-+..                    .+|.+++|++|.  .+.|+++.+..            
T Consensus         2 mIrV~ivG~-GnvAStlv~Gl~~~k~g~~~~~G~p~~~~~~~~~~Dievvgg~DId~~kvgk~l~eai~~~~n~~~~~~~   80 (275)
T d1vjpa1           2 MVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTS   80 (275)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCSS
T ss_pred             ceEEEEeec-cHHHHHHHHHHHHHHcCCCCCcCcccccccCCCCCCcEEEEEecCCcchhHHHHHHHHHhchhhhhhhhc
Confidence            699999998 9999999887632                    125689999994  34566553221            


Q ss_pred             ------cCc---------CCCCcceecCHHHHHhcc---cccCCccEEEEcCC------ch------------------h
Q 022250           81 ------DME---------QPLEIPVMSDLTMVLGSI---SQSKARAVVIDFTD------AS------------------T  118 (300)
Q Consensus        81 ------g~~---------~~~gv~v~~dl~~~l~~~---~~~~~~DVVIDfT~------p~------------------~  118 (300)
                            +..         ...+.....++.+.++++   .++.+.||||..++      +.                  +
T Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~v~~i~~di~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~i~a  160 (275)
T d1vjpa1          81 DPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLTA  160 (275)
T ss_dssp             CCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCCH
T ss_pred             ccCcccceecCccccccccccccccccchHHHHHHHHHHHHhcchhheeecccccccCCCCcHHHHHHHhhccCccccCh
Confidence                  000         000111112233332211   12346789998532      11                  3


Q ss_pred             HHHHHHHHH-----HcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcH--HHHHHHH--HHHHhc
Q 022250          119 VYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI--GSILLQQ--AAISAS  180 (300)
Q Consensus       119 ~~~~~~~al-----~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~Si--Gv~ll~~--~a~~~~  180 (300)
                      ..-++..|+     +.|++.|-+||-+... ...+.++++++|+| +..--|.-  |..++.+  ++..+.
T Consensus       161 S~~YA~AAL~~~~~~aG~~fVN~~P~~ia~-~Pal~ela~~~gvP-i~GdD~Ksq~G~Tiv~~~~La~lf~  229 (275)
T d1vjpa1         161 TQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLV-VFGDDGSPALGGLLVDLVRLGKIAL  229 (275)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEE-EECSSBHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCceeEeccCccccC-CHHHHHHHHHcCCc-EEcccchhhhhHHHHHHHHHHHHHH
Confidence            344556666     8899999999966432 24688889999998 45666766  8888865  444443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.78  E-value=0.001  Score=54.89  Aligned_cols=59  Identities=19%  Similarity=0.159  Sum_probs=43.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |++|+.+++.+.. =++++.+ +|+..  .          +.....++++++++.      .+|+|+-..
T Consensus        42 gk~vgIiG~-G~IG~~va~~l~~-~g~~v~~-~d~~~--~----------~~~~~~~~~l~ell~------~sDiv~~~~  100 (181)
T d1qp8a1          42 GEKVAVLGL-GEIGTRVGKILAA-LGAQVRG-FSRTP--K----------EGPWRFTNSLEEALR------EARAAVCAL  100 (181)
T ss_dssp             TCEEEEESC-STHHHHHHHHHHH-TTCEEEE-ECSSC--C----------CSSSCCBSCSHHHHT------TCSEEEECC
T ss_pred             CceEEEecc-ccccccceeeeec-ccccccc-ccccc--c----------ccceeeeechhhhhh------ccchhhccc
Confidence            478999998 9999999998764 5788775 56542  1          112234678999994      799998655

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=96.75  E-value=0.0011  Score=54.19  Aligned_cols=32  Identities=34%  Similarity=0.425  Sum_probs=28.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .||||+|. ||+||.+.+.+.+. +++++++-|+
T Consensus         1 ~kIgINGf-GRIGR~~~R~~~~~-~~~ivaINd~   32 (169)
T d1dssg1           1 SKIGINGF-GRIGRLVLRAALEM-GAQVVAVNDP   32 (169)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHH-TCCEEEEECT
T ss_pred             CeEEEECC-cHHHHHHHHHHHhC-CCcEEEECCC
Confidence            38999998 99999999998865 6899998885

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.70  E-value=0.001  Score=53.68  Aligned_cols=87  Identities=20%  Similarity=0.226  Sum_probs=57.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc--ceecCHHHHHhcccccCCccEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      ..||+|+|+ |.||+.+++.+.. .+..-+-+++++.  +.+..++   .+++.  ..++++.+.+.      ++|+||-
T Consensus        24 ~~~ilviGa-G~~g~~v~~~L~~-~g~~~i~v~nRt~--~ka~~l~---~~~~~~~~~~~~~~~~l~------~~Divi~   90 (159)
T d1gpja2          24 DKTVLVVGA-GEMGKTVAKSLVD-RGVRAVLVANRTY--ERAVELA---RDLGGEAVRFDELVDHLA------RSDVVVS   90 (159)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHH-HCCSEEEEECSSH--HHHHHHH---HHHTCEECCGGGHHHHHH------TCSEEEE
T ss_pred             cCeEEEECC-CHHHHHHHHHHHh-cCCcEEEEEcCcH--HHHHHHH---HhhhcccccchhHHHHhc------cCCEEEE
Confidence            478999998 9999999999886 4665555666642  2233333   22332  33578888874      7999998


Q ss_pred             cCC-ch--hHHHHHHHHHHc---CCCEE
Q 022250          113 FTD-AS--TVYDNVKQATAF---GMRSV  134 (300)
Q Consensus       113 fT~-p~--~~~~~~~~al~~---G~~vV  134 (300)
                      +|. |.  -..++++..++.   ++|++
T Consensus        91 atss~~~ii~~~~i~~~~~~r~~~~~~~  118 (159)
T d1gpja2          91 ATAAPHPVIHVDDVREALRKRDRRSPIL  118 (159)
T ss_dssp             CCSSSSCCBCHHHHHHHHHHCSSCCCEE
T ss_pred             ecCCCCccccHhhhHHHHHhcccCCCeE
Confidence            774 33  347777777653   46654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.69  E-value=0.0074  Score=49.79  Aligned_cols=123  Identities=20%  Similarity=0.176  Sum_probs=69.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhh-cCcCCCCcceecCHHHHHhcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVC-DMEQPLEIPVMSDLTMVLGSI  101 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------~g------~d~~~~~-g~~~~~gv~v~~dl~~~l~~~  101 (300)
                      |||+|+|+ |.+|..++..++ ..+++++ ++|.+.       .|      ....+.+ ..........++|+++++.  
T Consensus         1 MkI~ViGl-G~vGl~~a~~la-~~g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~--   75 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLS-ARGHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL--   75 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHH-HTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--
T ss_pred             CEEEEECC-CHhHHHHHHHHH-hCCCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh--
Confidence            78999998 999999998877 4688977 577431       00      0011100 0001122345678888874  


Q ss_pred             cccCCccEEEEcCCc-------------hhHHHHHHHHHH---cCCCEEEeCC---CCCHHHHHHHH-HHhhh---CCCe
Q 022250          102 SQSKARAVVIDFTDA-------------STVYDNVKQATA---FGMRSVVYVP---HIQLETVSALS-AFCDK---ASMG  158 (300)
Q Consensus       102 ~~~~~~DVVIDfT~p-------------~~~~~~~~~al~---~G~~vVigTT---G~~~e~~~~L~-~~a~~---~~i~  158 (300)
                          ++|+++.+.+.             ..+.+.+...++   .+.-+|+.+|   |.+.+....+. +....   .+..
T Consensus        76 ----~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~  151 (202)
T d1mv8a2          76 ----DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFG  151 (202)
T ss_dssp             ----TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBE
T ss_pred             ----hCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhcccccccccccc
Confidence                68988766432             123333333444   3345777766   67766544443 33321   2256


Q ss_pred             EEEcCCCcH
Q 022250          159 CLIAPTLSI  167 (300)
Q Consensus       159 iv~a~N~Si  167 (300)
                      ++++|=|-.
T Consensus       152 ~~~~PE~~~  160 (202)
T d1mv8a2         152 VGTNPEFLR  160 (202)
T ss_dssp             EEECCCCCC
T ss_pred             chhhhhhhc
Confidence            778877643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0047  Score=44.75  Aligned_cols=31  Identities=23%  Similarity=0.212  Sum_probs=24.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      -||+|+|. |+.|+.+++.+.+. +.++.. +|.
T Consensus         6 K~v~ViGl-G~sG~s~a~~L~~~-g~~v~~-~D~   36 (93)
T d2jfga1           6 KNVVIIGL-GLTGLSCVDFFLAR-GVTPRV-MDT   36 (93)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHT-TCCCEE-EES
T ss_pred             CEEEEEeE-CHHHHHHHHHHHHC-CCEEEE-eeC
Confidence            57999998 99999999988754 666654 564

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0054  Score=46.40  Aligned_cols=41  Identities=27%  Similarity=0.452  Sum_probs=30.9

Q ss_pred             eecCCCCCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .++|......||+|+|+ |..|++++.+..+ =+++++ ++|+.
T Consensus         3 ~~~~~~~~~~kigIlGg-GQL~rMla~aA~~-lG~~v~-v~d~~   43 (111)
T d1kjqa2           3 LGTALRPAATRVMLLGS-GELGKEVAIECQR-LGVEVI-AVDRY   43 (111)
T ss_dssp             BCCTTSTTCCEEEEESC-SHHHHHHHHHHHT-TTCEEE-EEESS
T ss_pred             cCCCCCCCCCEEEEEeC-CHHHHHHHHHHHH-CCCEEE-EEcCC
Confidence            34454444679999997 9999999998764 488875 57764

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.31  E-value=0.012  Score=46.85  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=31.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~   69 (300)
                      |.||+|.|+||-+|+...+.+.+.|+ +++++....
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~   37 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN   37 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC
Confidence            47999999999999999999988765 999998764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.28  E-value=0.0094  Score=52.59  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=28.2

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      ++.|||.|+|++|-+|+.+++.+.+ .+.+++++
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~-~g~~V~~~   45 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKH-EGHYVIAS   45 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHH-CcCEEEEE
Confidence            3468999999999999999999885 57888864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0059  Score=53.44  Aligned_cols=94  Identities=18%  Similarity=0.177  Sum_probs=54.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCc----CCCCcceecCHHHHHhcccccCCccEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~----~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      |||.|+|++|-+|+.+++.+.+....++.++ |...  .....+....    -...+...+++.+...     .++|+||
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~l-d~~~--~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~-----~~~d~Vi   72 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGL-DIGS--DAISRFLNHPHFHFVEGDISIHSEWIEYHV-----KKCDVVL   72 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEE-ESCC--GGGGGGTTCTTEEEEECCTTTCSHHHHHHH-----HHCSEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEE-eCCC--cchhhhccCCCeEEEECccCChHHHHHHHH-----hCCCccc
Confidence            5899999999999999999887666787764 5321  1111111000    0001111223333232     3699999


Q ss_pred             EcCCch------------------hHHHHHHHHHHcCCCEEEeC
Q 022250          112 DFTDAS------------------TVYDNVKQATAFGMRSVVYV  137 (300)
Q Consensus       112 DfT~p~------------------~~~~~~~~al~~G~~vVigT  137 (300)
                      .+....                  .....+..|.+.++..++-+
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~s  116 (342)
T d2blla1          73 PLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS  116 (342)
T ss_dssp             ECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cccccccccccccCCccccccccccccccccccccccccccccc
Confidence            976421                  13446677788888777643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.20  E-value=0.0048  Score=45.47  Aligned_cols=90  Identities=9%  Similarity=0.078  Sum_probs=54.7

Q ss_pred             CCCCCcceEEEEcCCchHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCc
Q 022250           30 NPPQSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKAR  107 (300)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~  107 (300)
                      |++..+.||=++|. |++|- .+++.+. +.++++.| .|... ......+.    +.|++++. .-.+.+      .++
T Consensus         3 ~~~~~~~~ihfiGi-gG~GMs~LA~~L~-~~G~~VsG-SD~~~-~~~~~~L~----~~Gi~v~~g~~~~~i------~~~   68 (96)
T d1p3da1           3 PEMRRVQQIHFIGI-GGAGMSGIAEILL-NEGYQISG-SDIAD-GVVTQRLA----QAGAKIYIGHAEEHI------EGA   68 (96)
T ss_dssp             CCCTTCCEEEEETT-TSTTHHHHHHHHH-HHTCEEEE-EESCC-SHHHHHHH----HTTCEEEESCCGGGG------TTC
T ss_pred             ccchhCCEEEEEEE-CHHHHHHHHHHHH-hCCCEEEE-EeCCC-ChhhhHHH----HCCCeEEECCccccC------CCC
Confidence            44556789999998 89894 4566555 67898876 57532 12223332    35666653 222233      367


Q ss_pred             cEEEEcCC-chhHHHHHHHHHHcCCCEE
Q 022250          108 AVVIDFTD-ASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       108 DVVIDfT~-p~~~~~~~~~al~~G~~vV  134 (300)
                      |+||--+. |+...+ +.+|.++|+|++
T Consensus        69 d~vV~S~AI~~~npe-l~~A~~~gipii   95 (96)
T d1p3da1          69 SVVVVSSAIKDDNPE-LVTSKQKRIPVI   95 (96)
T ss_dssp             SEEEECTTSCTTCHH-HHHHHHTTCCEE
T ss_pred             CEEEECCCcCCCCHH-HHHHHHcCCCEE
Confidence            87774432 444444 567888888886

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.11  E-value=0.0036  Score=52.86  Aligned_cols=60  Identities=25%  Similarity=0.391  Sum_probs=42.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||.|.|+||-+|+.+++.+. ..++++++ +|+..  -|            +.-+++++++++    ..++|+||.+..
T Consensus         2 MKIlItGasGfiG~~l~~~L~-~~g~~Vi~-~~r~~--~D------------~~d~~~~~~~l~----~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLK-GKNVEVIP-TDVQD--LD------------ITNVLAVNKFFN----EKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHT-TSSEEEEE-ECTTT--CC------------TTCHHHHHHHHH----HHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCEEEE-eechh--cc------------CCCHHHHHHHHH----HcCCCEEEeecc
Confidence            789999999999999999887 46899886 44432  11            111234556665    247899998763

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.02  E-value=0.067  Score=42.20  Aligned_cols=72  Identities=21%  Similarity=0.166  Sum_probs=44.5

Q ss_pred             CCcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchhh---hhcCcCCCCcceecCHHHHHhccccc
Q 022250           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIGM---VCDMEQPLEIPVMSDLTMVLGSISQS  104 (300)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---g--~d~~~---~~g~~~~~gv~v~~dl~~~l~~~~~~  104 (300)
                      +.+.||+|+|+ |.+|+.++-.+...+=.||+ .+|.+..   |  .|...   +.+  ...-+...++.++.+      
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~-L~D~~~~~~~g~a~Dl~~~~~~~~--~~~~~~~~~~~~~~~------   74 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVD--TNVSVRAEYSYEAAL------   74 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSSSHHHHHHHHHHHHHHHTT--CCCCEEEECSHHHHH------
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCceEE-EEEeccccchhHHHHHhhhccccC--CeeEEeccCchhhhh------
Confidence            45689999998 99999999877766545866 7885421   1  12111   111  122233346777777      


Q ss_pred             CCccEEEEcC
Q 022250          105 KARAVVIDFT  114 (300)
Q Consensus       105 ~~~DVVIDfT  114 (300)
                      .++|+||...
T Consensus        75 ~~adiVvita   84 (154)
T d1pzga1          75 TGADCVIVTA   84 (154)
T ss_dssp             TTCSEEEECC
T ss_pred             cCCCeEEEec
Confidence            3789888543

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.02  Score=45.53  Aligned_cols=98  Identities=14%  Similarity=0.071  Sum_probs=59.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCC---Ccchhhhh----------------c-C-cCCCCcceec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV---GEDIGMVC----------------D-M-EQPLEIPVMS   92 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~---g~d~~~~~----------------g-~-~~~~gv~v~~   92 (300)
                      |.||.|.|+||-+|+...+.+.+.|+ +++++.......   -+.+.++-                . + ....+++++.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~   80 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS   80 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhcccccccc
Confidence            56899999999999999999998875 899998763211   00000100                0 0 0122344432


Q ss_pred             ---CHHHHHhcccccCCccEEEEcCCchhHHHHHHHHHHcCCCEEEe
Q 022250           93 ---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus        93 ---dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (300)
                         ++.++..    ..++|+||-...--+-..-...|+++|+.+-+.
T Consensus        81 g~~~l~~~~~----~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA  123 (151)
T d1q0qa2          81 GQQAACDMAA----LEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA  123 (151)
T ss_dssp             SHHHHHHHHT----CTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred             ChHHHHHHhc----CCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence               2333332    246777776666666677777777777776665

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.02  E-value=0.015  Score=48.65  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=29.0

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ++.||.|+|+||.+|+.+++.+.+ .+.++.++..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~-~G~~V~~l~R   35 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLD-LGHPTFLLVR   35 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEC
Confidence            478999999999999999999985 4788887553

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.00  E-value=0.0054  Score=48.57  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      .+||+|+|+ |.+|..++-.+...+-. ||+ .+|.+
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elv-L~D~~   39 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFV-IVDVV   39 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEE-Eeecc
Confidence            579999997 99999999988765533 554 57854

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.89  E-value=0.075  Score=41.59  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=26.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      |||+|+|++|++|+.++-.+...+-+ ||+ .+|.+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~-L~D~~   35 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLV-LIGRE   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEE-EEECG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccc-cccch
Confidence            79999998899999999988766533 554 57753

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.87  E-value=0.039  Score=41.69  Aligned_cols=120  Identities=14%  Similarity=0.158  Sum_probs=64.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e------cCHHHHHhcccccCCccE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M------SDLTMVLGSISQSKARAV  109 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~------~dl~~~l~~~~~~~~~DV  109 (300)
                      |+.|+|+ |++|+.+++.+.+ .+.+++. +|.++  +.+.++.    ..+..+ +      +.++++-     -.++|+
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~-~g~~vvv-id~d~--~~~~~~~----~~~~~~~~gd~~~~~~l~~a~-----i~~a~~   67 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHR-MGHEVLA-VDINE--EKVNAYA----SYATHAVIANATEENELLSLG-----IRNFEY   67 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHH-TTCCCEE-EESCH--HHHHHTT----TTCSEEEECCTTCTTHHHHHT-----GGGCSE
T ss_pred             EEEEECC-CHHHHHHHHHHHH-CCCeEEE-ecCcH--HHHHHHH----HhCCcceeeecccchhhhccC-----CccccE
Confidence            6899998 9999999999875 5677664 66542  1112211    122222 1      1223321     136787


Q ss_pred             EEEcCC-chhH-HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHH
Q 022250          110 VIDFTD-ASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (300)
Q Consensus       110 VIDfT~-p~~~-~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~  175 (300)
                      +|-.++ .+.. .-....+...+.+-++..+- +++..+.|.    +.|+..++.|..-.|..+...+
T Consensus        68 vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~-~~~~~~~l~----~~Gad~vi~p~~~~a~~la~~l  130 (134)
T d2hmva1          68 VIVAIGANIQASTLTTLLLKELDIPNIWVKAQ-NYYHHKVLE----KIGADRIIHPEKDMGVKIAQSL  130 (134)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCSEEEEECC-SHHHHHHHH----HHTCSEEECHHHHHHHHHHHHH
T ss_pred             EEEEcCchHHhHHHHHHHHHHcCCCcEEeecc-cHhHHHHHH----HCCCCEEEChHHHHHHHHHHHH
Confidence            764443 2232 22233445556555554332 344444443    3466778888877776554443

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=95.86  E-value=0.0032  Score=53.37  Aligned_cols=62  Identities=11%  Similarity=0.219  Sum_probs=37.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      |||.|.|++|-+|+.+++.+.+. + +++.+ +...  .   .+     ...+.-.+.+++++.    ..++|+||.+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~-g-~~v~~-~~~~--~---~~-----~~Dl~~~~~~~~~i~----~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPV-G-NLIAL-DVHS--K---EF-----CGDFSNPKGVAETVR----KLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTT-S-EEEEE-CTTC--S---SS-----CCCTTCHHHHHHHHH----HHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-C-CEEEE-ECCC--c---cc-----cCcCCCHHHHHHHHH----HcCCCEEEEec
Confidence            78999999999999999987643 3 44443 3221  0   00     011111223455554    24789999975

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.017  Score=50.49  Aligned_cols=30  Identities=20%  Similarity=0.412  Sum_probs=26.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      |||.|+|++|-+|+.+++.+.+. +.+++++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~-g~~V~~~   30 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIIL   30 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-cCEEEEE
Confidence            78999999999999999999864 7898875

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.031  Score=46.40  Aligned_cols=94  Identities=18%  Similarity=0.093  Sum_probs=53.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCcCCCCcce--ecCHHHHHhcccccCCccEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~~~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI  111 (300)
                      +.||.|.|+||-+|+.+++.+.+...+ ++.++..++. .......    ......+  +++++++.+.   ..++|+++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~-~~~~~~~----~~i~~~~~D~~~~~~~~~~---~~~~d~vi   85 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL-TFDEEAY----KNVNQEVVDFEKLDDYASA---FQGHDVGF   85 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC-CCCSGGG----GGCEEEECCGGGGGGGGGG---GSSCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh-hhccccc----ceeeeeeeccccccccccc---cccccccc
Confidence            468999999999999999999877664 6776553221 1111110    0111111  2233333221   14789998


Q ss_pred             EcCCc---------------hhHHHHHHHHHHcCCCEEEe
Q 022250          112 DFTDA---------------STVYDNVKQATAFGMRSVVY  136 (300)
Q Consensus       112 DfT~p---------------~~~~~~~~~al~~G~~vVig  136 (300)
                      .+...               +.....++.|.+.|+..++-
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~  125 (232)
T d2bkaa1          86 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNL  125 (232)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccccccccccchhhhhhhcccccceeeecccccCcccccc
Confidence            75421               12345667788888885433

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.01  Score=48.79  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=26.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      -||+|+|+ |.||+.++..++. .+++++ ++|.+
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~-~G~~V~-l~D~~   36 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAA-TGHTVV-LVDQT   36 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSC
T ss_pred             EEEEEECc-CHHHHHHHHHHHh-CCCcEE-EEECC
Confidence            48999998 9999999998774 688866 67754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.011  Score=47.12  Aligned_cols=96  Identities=16%  Similarity=0.166  Sum_probs=53.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCc-ce--e--cCHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PV--M--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv-~v--~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      -+|.|+|++|.+|...++.+. .-++++++..+++.   . .+++   .++|. .+  +  .|+.+.+.+......+|++
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~-~~G~~vi~~~~~~~---~-~~~~---~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v  101 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIAR-AYGLKILGTAGTEE---G-QKIV---LQNGAHEVFNHREVNYIDKIKKYVGEKGIDII  101 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESSHH---H-HHHH---HHTTCSEEEETTSTTHHHHHHHHHCTTCEEEE
T ss_pred             CEEEEEecccccccccccccc-ccCccccccccccc---c-cccc---cccCcccccccccccHHHHhhhhhccCCceEE
Confidence            369999988999999999765 56899988776431   1 1111   12222 11  1  2333332211122457888


Q ss_pred             EEcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250          111 IDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      +|++..+.....+......|.=+++|..+
T Consensus       102 ~d~~g~~~~~~~~~~l~~~G~iv~~G~~~  130 (174)
T d1yb5a2         102 IEMLANVNLSKDLSLLSHGGRVIVVGSRG  130 (174)
T ss_dssp             EESCHHHHHHHHHHHEEEEEEEEECCCCS
T ss_pred             eecccHHHHHHHHhccCCCCEEEEEecCC
Confidence            88776544333333333445556666553

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.70  E-value=0.012  Score=46.04  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=26.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      |||+|+|+ |.+|+.++-.+...+-. ||+ .+|.+
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~-L~Di~   34 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVV   34 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEE-Eeccc
Confidence            79999998 99999999888765433 655 68854

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.012  Score=51.17  Aligned_cols=31  Identities=19%  Similarity=0.281  Sum_probs=27.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      +.||.|.|++|-+|+.+++.+.+ .+.+++++
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~-~g~~V~~~   31 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMM-DGHEVTVV   31 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CcCEEEEE
Confidence            36899999999999999999876 58998875

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0057  Score=48.43  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=25.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHh-cCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~   70 (300)
                      |||+|+|++|++|+.++-.+.. .+-..-+..+|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            7999999779999999887653 3433334467754

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.48  E-value=0.015  Score=51.79  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=28.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |||.|.|++|-+|+.+++.+.+. +.+++.++|.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~-g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKN-TQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHH-CSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeC
Confidence            58999999999999999999864 6677777874

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.37  E-value=0.0086  Score=47.10  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      |||+|+|+ |++|..++-.+...+-+ ||+ .+|.+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di~   34 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIA-LVDIA   34 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEE-EECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEE-EEecc
Confidence            79999998 99999999988766554 555 57853

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.34  E-value=0.018  Score=41.69  Aligned_cols=84  Identities=17%  Similarity=0.186  Sum_probs=51.8

Q ss_pred             ceEEEEcCCchHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecC-HHHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d-l~~~l~~~~~~~~~DVVIDf  113 (300)
                      |||=++|. |++|-. +++ ++.+.++++.| .|... ......+    .+.|++++.. -.+-+      .++|+||--
T Consensus         2 ~~ihfiGI-gG~GMs~LA~-~L~~~G~~VsG-SD~~~-~~~t~~L----~~~Gi~i~~gh~~~~i------~~~d~vV~S   67 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVAL-HEFSNGNDVYG-SNIEE-TERTAYL----RKLGIPIFVPHSADNW------YDPDLVIKT   67 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHH-HHHHTTCEEEE-ECSSC-CHHHHHH----HHTTCCEESSCCTTSC------CCCSEEEEC
T ss_pred             cEEEEEeE-CHHHHHHHHH-HHHhCCCeEEE-EeCCC-ChhHHHH----HHCCCeEEeeeccccc------CCCCEEEEe
Confidence            78999998 888875 555 45568998776 56532 1222222    3567777632 11222      367888744


Q ss_pred             CC-chhHHHHHHHHHHcCCCEE
Q 022250          114 TD-ASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       114 T~-p~~~~~~~~~al~~G~~vV  134 (300)
                      +. |+. ..-+.+|.+.|+||.
T Consensus        68 sAI~~~-npel~~A~~~gIpv~   88 (89)
T d1j6ua1          68 PAVRDD-NPEIVRARMERVPIE   88 (89)
T ss_dssp             TTCCTT-CHHHHHHHHTTCCEE
T ss_pred             cCcCCC-CHHHHHHHHcCCCcc
Confidence            43 443 344788889999885

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.31  E-value=0.01  Score=47.95  Aligned_cols=101  Identities=15%  Similarity=0.096  Sum_probs=55.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.|+|+|+ |.+|...++.++. -+..-+-+.|++..-.+..+-.|...-....-.+ ..+..... .....+|++||++
T Consensus        30 ~~VlV~G~-G~iGl~a~~~ak~-~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~-~~~~G~d~vie~~  106 (174)
T d1e3ia2          30 STCAVFGL-GCVGLSAIIGCKI-AGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITE-LTAGGVDYSLDCA  106 (174)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH-HHTSCBSEEEESS
T ss_pred             CEEEEECC-ChHHHHHHHHHHH-hCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhh-hhcCCCcEEEEec
Confidence            36999998 9999999997764 4665566677543111222212210000000111 12222210 0124689999999


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      -.+.+.+.+..+++.  |.=+++|.++
T Consensus       107 G~~~~~~~a~~~~~~g~G~~v~vG~~~  133 (174)
T d1e3ia2         107 GTAQTLKAAVDCTVLGWGSCTVVGAKV  133 (174)
T ss_dssp             CCHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred             ccchHHHHHHHHhhcCCeEEEecCCCC
Confidence            666666666666543  6777788653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.29  E-value=0.03  Score=47.21  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=28.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |.||.|+|+||.+|+.+++.+.+ .+++++++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~-~G~~V~~~~R   35 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFR   35 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEEC
Confidence            67999999999999999999886 4788887654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.20  E-value=0.0061  Score=49.29  Aligned_cols=99  Identities=15%  Similarity=0.136  Sum_probs=52.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEEEEcC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      +|+|+|+ |.+|...++.++ .-+.+-+-++|++..-.+..+-.|..   .+-.+  +++.+.+.+......+|+|||++
T Consensus        30 ~VlI~Ga-G~vGl~~~q~ak-~~Ga~~Vi~~d~~~~r~~~a~~lGa~---~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          30 SVVVIGI-GAVGLMGIAGAK-LRGAGRIIGVGSRPICVEAAKFYGAT---DILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CEEEECC-SHHHHHHHHHHH-TTTCSCEEEECCCHHHHHHHHHHTCS---EEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             EEEEEcC-Ccchhhhhhhhh-cccccccccccchhhhHHHHHhhCcc---ccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            5999998 999999999777 45664444666532101111112210   01001  23333332221223489999988


Q ss_pred             CchhH-HHHHHHHHHcCCCEEEeCCCC
Q 022250          115 DASTV-YDNVKQATAFGMRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vVigTTG~  140 (300)
                      ..... ...+..+...|.-+++|.++.
T Consensus       105 g~~~~~~~a~~~~~~~G~iv~~G~~~~  131 (174)
T d1jqba2         105 GGSETLSQAVKMVKPGGIISNINYHGS  131 (174)
T ss_dssp             SCTTHHHHHHHHEEEEEEEEECCCCCS
T ss_pred             CCHHHHHHHHHHHhcCCEEEEEeecCC
Confidence            54444 444555555666667776543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.13  E-value=0.018  Score=47.46  Aligned_cols=63  Identities=19%  Similarity=0.151  Sum_probs=44.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .+|+|+|+ |++|+.+++.+.. =++++.+ +|+... .+...      ..++...+++++++.      .+|+|+-..
T Consensus        50 ktvgIiG~-G~IG~~va~~l~~-fg~~v~~-~d~~~~-~~~~~------~~~~~~~~~l~~ll~------~sD~i~~~~  112 (193)
T d1mx3a1          50 ETLGIIGL-GRVGQAVALRAKA-FGFNVLF-YDPYLS-DGVER------ALGLQRVSTLQDLLF------HSDCVTLHC  112 (193)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHT-TTCEEEE-ECTTSC-TTHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             ceEEEecc-ccccccceeeeec-cccceee-ccCccc-ccchh------hhccccccchhhccc------cCCEEEEee
Confidence            68999998 9999999998864 5899875 565321 11111      224455679999995      689988654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=95.06  E-value=0.04  Score=44.62  Aligned_cols=123  Identities=11%  Similarity=0.083  Sum_probs=65.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcC------CcEEEEEEecCCC-----CcchhhhhcCc--CCCCcceecCHHHHHhcc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHSV-----GEDIGMVCDME--QPLEIPVMSDLTMVLGSI  101 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLvg~vd~~~~-----g~d~~~~~g~~--~~~gv~v~~dl~~~l~~~  101 (300)
                      ++||.|+||+|.+|+.++-.+.+.+      ..+| -.+|.+..     |... ++-...  ....+.++++..+.+   
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L-~L~di~~~~~~l~g~~m-dl~d~a~~~~~~~~~~~~~~~~~---   98 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIAL-KLLGSERSFQALEGVAM-ELEDSLYPLLREVSIGIDPYEVF---   98 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEE-EEECCGGGHHHHHHHHH-HHHTTTCTTEEEEEEESCHHHHT---
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEE-EEecCccccchhcchhh-hhcccccccccCccccccchhhc---
Confidence            5899999999999999998887532      1233 23453221     1110 111100  011345567777777   


Q ss_pred             cccCCccEEEEcC-Cch---hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHH
Q 022250          102 SQSKARAVVIDFT-DAS---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (300)
Q Consensus       102 ~~~~~~DVVIDfT-~p~---~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~  177 (300)
                         .++|+||... .|.   .....   .++.+.+++       .+..+.|.+.|.+ ++.+++.+|-   +|.+-.++.
T Consensus        99 ---~~aDvVvi~ag~~rkpg~tR~D---ll~~N~~I~-------k~~~~~i~~~a~~-~~~vlvv~NP---vd~~t~ia~  161 (175)
T d7mdha1          99 ---EDVDWALLIGAKPRGPGMERAA---LLDINGQIF-------ADQGKALNAVASK-NVKVLVVGNP---CNTNALICL  161 (175)
T ss_dssp             ---TTCSEEEECCCCCCCTTCCHHH---HHHHHHHHH-------HHHHHHHHHHSCT-TCEEEECSSS---HHHHHHHHH
T ss_pred             ---cCCceEEEeeccCCCCCCcHHH---HHHHHHHHH-------HHHHHHHHhhCCC-CcEEEEecCc---HHHHHHHHH
Confidence               4789888544 121   11111   111111111       2344556666642 3678888993   777776665


Q ss_pred             Hh
Q 022250          178 SA  179 (300)
Q Consensus       178 ~~  179 (300)
                      +.
T Consensus       162 k~  163 (175)
T d7mdha1         162 KN  163 (175)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.038  Score=43.65  Aligned_cols=132  Identities=12%  Similarity=0.034  Sum_probs=67.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      -+|+|+|+ |.+|...++.+. .-+.+.++ ++....-.+...-+|.   ..+..+.+.+.....   ...+|++||++.
T Consensus        32 ~~VlI~Ga-G~vG~~a~qlak-~~Ga~~i~-~~~~~~~~~~a~~lGa---d~~i~~~~~~~~~~~---~~~~D~vid~~g  102 (168)
T d1uufa2          32 KKVGVVGI-GGLGHMGIKLAH-AMGAHVVA-FTTSEAKREAAKALGA---DEVVNSRNADEMAAH---LKSFDFILNTVA  102 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEE-EESSGGGHHHHHHHTC---SEEEETTCHHHHHTT---TTCEEEEEECCS
T ss_pred             CEEEEecc-chHHHHHHHHhh-cccccchh-hccchhHHHHHhccCC---cEEEECchhhHHHHh---cCCCceeeeeee
Confidence            46999998 999999998776 46888885 5543211121111221   111122333332221   246899999986


Q ss_pred             ch-hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhc
Q 022250          116 AS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (300)
Q Consensus       116 p~-~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~  180 (300)
                      .. .....+..+...|.-+++|.++-..... ....+.. +++.+.-+.+.+.  .-+.++.+.++
T Consensus       103 ~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~-~~~~l~~-k~~~i~Gs~~~~~--~d~~e~l~l~a  164 (168)
T d1uufa2         103 APHNLDDFTTLLKRDGTMTLVGAPATPHKSP-EVFNLIM-KRRAIAGSMIGGI--PETQEMLDFCA  164 (168)
T ss_dssp             SCCCHHHHHTTEEEEEEEEECCCC--------CHHHHHT-TTCEEEECCSCCH--HHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhcCCEEEEeccCCCCcccc-cHHHHHH-CCcEEEEEeecCH--HHHHHHHHHHH
Confidence            44 4444444444556667777653222111 2222322 3367766655553  24455544443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.88  E-value=0.016  Score=46.70  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=27.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      -+|.|.|++|.+|++.++..+ .-++++++...+
T Consensus        31 ~~VlV~ga~ggvG~~aiqlak-~~Ga~vi~~~~~   63 (182)
T d1v3va2          31 ETVLVSAAAGAVGSVVGQIAK-LKGCKVVGAAGS   63 (182)
T ss_dssp             CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CEEEEEeCCCchhHHHHHHHH-ccCCEEEEeCCC
Confidence            358999999999999999765 568999987754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.85  E-value=0.022  Score=44.79  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=26.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ||+|+||+|++|+.++-.+...+-+.=+..+|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            8999998899999999988866554334457854

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.80  E-value=0.015  Score=46.40  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=27.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      -+|.|+|++|.+|...++.+. .-++++++++++
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~-~~g~~vi~~~~~   59 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAK-MIGARIYTTAGS   59 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HHTCEEEEEESS
T ss_pred             CEEEEECCCCCcccccchhhc-cccccceeeecc
Confidence            369999988999999999775 468888887754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.80  E-value=0.013  Score=46.11  Aligned_cols=70  Identities=17%  Similarity=0.183  Sum_probs=40.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecCC---CCc--chhhhhcCcCCCCcceecCHHHHHhcccccCCccE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VGE--DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---~g~--d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (300)
                      -||+|+|+ |++|+.++-.+....-+ ||+ .+|.++   .|+  |............+...++++++       .++|+
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~Elv-L~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~-------~daDv   72 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIV-LEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEIC-------RDADM   72 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGG-------TTCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEE-EEEeccccchhHHHHHHhccccCCCceeecCCCHHHh-------hCCcE
Confidence            69999998 99999999887755433 666 578532   111  12111111012223335677654       36898


Q ss_pred             EEEcC
Q 022250          110 VIDFT  114 (300)
Q Consensus       110 VIDfT  114 (300)
                      ||...
T Consensus        73 VVita   77 (143)
T d1llda1          73 VVITA   77 (143)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            88654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.72  E-value=0.0096  Score=48.05  Aligned_cols=33  Identities=15%  Similarity=0.253  Sum_probs=26.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~v   67 (300)
                      |.+|.|.|++|.+|+.+++.+.+. ..+.+++..
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~   36 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   36 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEc
Confidence            578999999999999999999864 335555543

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.69  E-value=0.032  Score=47.74  Aligned_cols=30  Identities=20%  Similarity=0.376  Sum_probs=26.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ||.|.|++|-+|+.+++.+.+ .++++++ +|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~-~g~~V~~-id   31 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALS-QGIDLIV-FD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EE
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CcCEEEE-EE
Confidence            899999999999999999886 4899987 44

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.038  Score=47.32  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=24.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg   65 (300)
                      +.||.|.|+||-+|+.+++.+.+. +.+.+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~-g~~vi~   31 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQR-GDVELV   31 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-TTEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHC-cCEEEE
Confidence            579999999999999999998864 555543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.56  E-value=0.037  Score=44.89  Aligned_cols=31  Identities=16%  Similarity=0.242  Sum_probs=26.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAG   65 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg   65 (300)
                      +.||.|.|+||-+|+.+++.+.+++.. ++..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~   33 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIA   33 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEE
Confidence            469999999999999999999887765 4443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.49  E-value=0.0075  Score=48.42  Aligned_cols=33  Identities=33%  Similarity=0.435  Sum_probs=27.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      -+|.|+|++|.+|+..++.++ ..+++++++.++
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak-~~G~~vi~~~~~   61 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVAR-AMGLRVLAAASR   61 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CEEEEEeccccchhhhhhhhc-cccccccccccc
Confidence            469999988999999999765 568898887654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.44  E-value=0.03  Score=44.99  Aligned_cols=99  Identities=13%  Similarity=0.141  Sum_probs=53.6

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecC-HHHHHhcccccCCccEEEEcCCc
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~d-l~~~l~~~~~~~~~DVVIDfT~p  116 (300)
                      |+|+|+ |.+|...++.++..-..+++ ++|.+..-.+...-.|...-.+..-.++ .+++.+ ......+|++||++..
T Consensus        33 VlI~G~-GgvGl~ai~~ak~~G~~~Vi-~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~-~~~g~G~d~vi~~~g~  109 (176)
T d1d1ta2          33 CVVFGL-GGVGLSVIMGCKSAGASRII-GIDLNKDKFEKAMAVGATECISPKDSTKPISEVLS-EMTGNNVGYTFEVIGH  109 (176)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCSEEE-EECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHH-HHHTSCCCEEEECSCC
T ss_pred             EEEECC-CchhHHHHHHHHHcCCceEE-EecCcHHHHHHHHhcCCcEEECccccchHHHHHHH-HhccccceEEEEeCCc
Confidence            899998 99999999987754334555 4665321112222222110000000111 222221 1113569999999977


Q ss_pred             hhHHHHHHHHH-Hc-CCCEEEeCCC
Q 022250          117 STVYDNVKQAT-AF-GMRSVVYVPH  139 (300)
Q Consensus       117 ~~~~~~~~~al-~~-G~~vVigTTG  139 (300)
                      ....+....++ +. |+-+++|.+.
T Consensus       110 ~~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         110 LETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             HHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             hHHHHHHHHHhhcCCeEEEEEEccc
Confidence            76665554444 44 6888888764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.42  E-value=0.032  Score=45.45  Aligned_cols=65  Identities=17%  Similarity=0.113  Sum_probs=44.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|+ |++|+.+++.+.. =++++.+ +|+.....+..      ...++....++++++.      .+|+|+-..
T Consensus        44 ~~~vgiiG~-G~IG~~va~~l~~-fg~~v~~-~d~~~~~~~~~------~~~~~~~~~~l~~~l~------~sD~v~~~~  108 (188)
T d2naca1          44 AMHVGTVAA-GRIGLAVLRRLAP-FDVHLHY-TDRHRLPESVE------KELNLTWHATREDMYP------VCDVVTLNC  108 (188)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHGG-GTCEEEE-ECSSCCCHHHH------HHHTCEECSSHHHHGG------GCSEEEECS
T ss_pred             ccceeeccc-cccchhhhhhhhc-cCceEEE-Eeecccccccc------ccccccccCCHHHHHH------hccchhhcc
Confidence            479999998 9999999998764 4677554 66533212211      1234556689999984      789887544

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.42  E-value=0.01  Score=46.42  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=25.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      |||+|+|+ |.+|+.++-.+...+-. ||+ .+|.+
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~-L~Di~   34 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMV-LIDVD   34 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEE-EEecc
Confidence            79999997 99999999877765443 554 67753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.41  E-value=0.018  Score=45.01  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=26.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      |||+|+|.+|.||+.+++.+.+ .+++++- ++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~-~G~~V~l-~~R~   33 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLAT-LGHEIVV-GSRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEE-EESS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHH-CCCEEEE-EECC
Confidence            7899996569999999998884 6888774 4554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.35  E-value=0.038  Score=44.19  Aligned_cols=134  Identities=13%  Similarity=0.056  Sum_probs=67.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-e--e--cCHHHHHh---cccccCCc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V--M--SDLTMVLG---SISQSKAR  107 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v--~--~dl~~~l~---~~~~~~~~  107 (300)
                      =+|.|+|+ |.+|...++.+. .-+.+-|-++|.+.  .. -+++   .++|.. +  +  .+..+..+   +......+
T Consensus        30 ~~VlV~Ga-G~iG~~~~~~ak-~~Ga~~Vi~~~~~~--~~-~~~a---~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~  101 (182)
T d1vj0a2          30 KTVVIQGA-GPLGLFGVVIAR-SLGAENVIVIAGSP--NR-LKLA---EEIGADLTLNRRETSVEERRKAIMDITHGRGA  101 (182)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTBSEEEEEESCH--HH-HHHH---HHTTCSEEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred             CEEEEECC-Cccchhheeccc-cccccccccccccc--cc-cccc---ccccceEEEeccccchHHHHHHHHHhhCCCCc
Confidence            36999998 999999999776 45774333455432  11 1121   122211 1  1  23322211   11112358


Q ss_pred             cEEEEcCCchhHHHHHHHHHHc-CCCEEEeCCCCC-HHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhc
Q 022250          108 AVVIDFTDASTVYDNVKQATAF-GMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (300)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~-G~~vVigTTG~~-~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~  180 (300)
                      |+|||++....+.+.+..+++. |+=+++|.++-. +-.......+.. +++.+.-+-+++.-  -+.++.+.+.
T Consensus       102 Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~-k~l~i~G~~~~~~~--~~~~~~~~i~  173 (182)
T d1vj0a2         102 DFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVL-KNATFKGIWVSDTS--HFVKTVSITS  173 (182)
T ss_dssp             EEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTT-TTCEEEECCCCCHH--HHHHHHHHHH
T ss_pred             eEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHH-CCcEEEEEEeCCHH--HHHHHHHHHH
Confidence            9999998655555555455444 455567654221 111112222232 34777766666654  4555555544

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.062  Score=45.09  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=26.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .-||+|+|+ |.+|..++..+.. -++.=..++|.
T Consensus        30 ~~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~   62 (247)
T d1jw9b_          30 DSRVLIVGL-GGLGCAASQYLAS-AGVGNLTLLDF   62 (247)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECC
T ss_pred             CCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEECC
Confidence            368999998 9999999998875 46655566774

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.034  Score=44.01  Aligned_cols=95  Identities=17%  Similarity=0.125  Sum_probs=52.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-----ecCHHHHHhccc--ccCCccE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-----MSDLTMVLGSIS--QSKARAV  109 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-----~~dl~~~l~~~~--~~~~~DV  109 (300)
                      +|+|+|+ |.||...++.+.. -+.+-+-++|+..   +--+++   .++|...     .++..+....+.  ....+|+
T Consensus        29 ~VlI~G~-G~iG~~~~~~a~~-~G~~~Vi~~d~~~---~rl~~a---~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          29 KVLVCGA-GPIGMVTLLVAKA-MGAAQVVVTDLSA---TRLSKA---KEIGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCSEEEEEESCH---HHHHHH---HHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             EEEEECC-CccHHHHHHHHHH-cCCceEEeccCCH---HHHHHH---HHhCCcccccccccccccccccccccCCCCceE
Confidence            5999998 9999999987764 5664333466532   111111   1222211     134333322110  1236799


Q ss_pred             EEEcCCchhHHHHHHHHHHcC-CCEEEeCCC
Q 022250          110 VIDFTDASTVYDNVKQATAFG-MRSVVYVPH  139 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G-~~vVigTTG  139 (300)
                      +||++..+...+.+..+++.| .=+++|.++
T Consensus       101 vid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2         101 TIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             EEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             EEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence            999987666666655555554 444456553

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.18  E-value=0.029  Score=44.95  Aligned_cols=96  Identities=15%  Similarity=0.135  Sum_probs=52.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-e--e--cC--HHHHHhcccccCCcc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V--M--SD--LTMVLGSISQSKARA  108 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v--~--~d--l~~~l~~~~~~~~~D  108 (300)
                      =+|+|+|+ |.+|...++.+... +..-|-++|++..-.+...      ++|.. +  +  .|  .++.... .....+|
T Consensus        29 ~~VlV~Ga-GgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~------~lGa~~~i~~~~~d~~~~~~~~~-~~~~G~d   99 (174)
T d1p0fa2          29 STCAVFGL-GGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAI------ELGATECLNPKDYDKPIYEVICE-KTNGGVD   99 (174)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH------HTTCSEEECGGGCSSCHHHHHHH-HTTSCBS
T ss_pred             CEEEEECC-CchhHHHHHHHHHc-CCceeeccCChHHHHHHHH------HcCCcEEEcCCCchhHHHHHHHH-hcCCCCc
Confidence            35999998 99999999987754 4444445665421112221      22221 1  1  11  3333321 1123578


Q ss_pred             EEEEcCCchhHHHHHHHHH-H-cCCCEEEeCCCC
Q 022250          109 VVIDFTDASTVYDNVKQAT-A-FGMRSVVYVPHI  140 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al-~-~G~~vVigTTG~  140 (300)
                      ++||++......+....++ . .|+-+++|.++.
T Consensus       100 ~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~  133 (174)
T d1p0fa2         100 YAVECAGRIETMMNALQSTYCGSGVTVVLGLASP  133 (174)
T ss_dssp             EEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred             EEEEcCCCchHHHHHHHHHHHhcCceEEEEEecC
Confidence            8888886665555555444 3 356677776543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.06  E-value=0.068  Score=44.01  Aligned_cols=62  Identities=15%  Similarity=0.064  Sum_probs=42.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |++|+.+++.+. .=++++.+ +|+..  ......      .++ ...++++++.      .+|+|+-..
T Consensus        43 gk~vgIiG~-G~IG~~va~~l~-~fg~~V~~-~d~~~--~~~~~~------~~~-~~~~l~~~l~------~sDii~~~~  104 (197)
T d1j4aa1          43 DQVVGVVGT-GHIGQVFMQIME-GFGAKVIT-YDIFR--NPELEK------KGY-YVDSLDDLYK------QADVISLHV  104 (197)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSSC--CHHHHH------TTC-BCSCHHHHHH------HCSEEEECS
T ss_pred             CCeEEEecc-cccchhHHHhHh-hhcccccc-cCccc--cccccc------cee-eecccccccc------ccccccccC
Confidence            378999998 999999999886 45888875 56542  111111      112 2468999995      689988554

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.01  E-value=0.019  Score=45.38  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK   57 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~   57 (300)
                      ++||.|+||+|++|+.++-.+.+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~   25 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGN   25 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHH
Confidence            58999999889999999987764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.98  E-value=0.049  Score=43.02  Aligned_cols=93  Identities=17%  Similarity=0.132  Sum_probs=50.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec---CHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~---dl~~~l~~~~~~~~~DVVID  112 (300)
                      -+|.|+|+ |.+|...++.+. ..++++++ +|.+..-.+...-.|..   .+-.+.   +..+..     ...+|+++|
T Consensus        29 ~~vlI~Ga-G~vG~~a~q~ak-~~G~~vi~-~~~~~~k~~~a~~lGa~---~~i~~~~~~~~~~~~-----~~~~d~vi~   97 (168)
T d1piwa2          29 KKVGIVGL-GGIGSMGTLISK-AMGAETYV-ISRSSRKREDAMKMGAD---HYIATLEEGDWGEKY-----FDTFDLIVV   97 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HHTCEEEE-EESSSTTHHHHHHHTCS---EEEEGGGTSCHHHHS-----CSCEEEEEE
T ss_pred             CEEEEECC-CCcchhHHHHhh-hccccccc-cccchhHHHHhhccCCc---EEeeccchHHHHHhh-----hcccceEEE
Confidence            46999998 999999998766 46899876 56432111211112210   111121   222222     256899999


Q ss_pred             cCCc--hhHHHHH-HHHHHcCCCEEEeCCC
Q 022250          113 FTDA--STVYDNV-KQATAFGMRSVVYVPH  139 (300)
Q Consensus       113 fT~p--~~~~~~~-~~al~~G~~vVigTTG  139 (300)
                      +...  +...+.. ......|+=+++|.++
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          98 CASSLTDIDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             CCSCSTTCCTTTGGGGEEEEEEEEECCCCC
T ss_pred             EecCCccchHHHHHHHhhccceEEEecccc
Confidence            8532  2223333 3333446666676553

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.83  E-value=0.09  Score=43.15  Aligned_cols=61  Identities=16%  Similarity=0.108  Sum_probs=42.1

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|+ |++|+.+++.+.. =++++.+ +|+...  +..       ... .-+.++++++.      .+|+|+-..
T Consensus        45 ~ktvgIiG~-G~IG~~va~~l~~-fg~~v~~-~d~~~~--~~~-------~~~-~~~~~l~~l~~------~~D~v~~~~  105 (199)
T d1dxya1          45 QQTVGVMGT-GHIGQVAIKLFKG-FGAKVIA-YDPYPM--KGD-------HPD-FDYVSLEDLFK------QSDVIDLHV  105 (199)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSCC--SSC-------CTT-CEECCHHHHHH------HCSEEEECC
T ss_pred             ceeeeeeec-ccccccccccccc-cceeeec-cCCccc--hhh-------hcc-hhHHHHHHHHH------hcccceeee
Confidence            368999998 9999999998864 4888775 665321  100       111 12468999985      689888654

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.80  E-value=0.11  Score=45.17  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=26.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhc-CCcEEEEEEe
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (300)
                      ||||.|.|+||-+|+.+++.+.+. .++.+++ +|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~-~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV-LD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE-EE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE-Ee
Confidence            689999999999999999988754 3456664 55

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.64  E-value=0.19  Score=43.50  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=29.4

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      .+.+|+|+|+||.+|+.+++.+.+ .++++.+++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~-~G~~V~~l~R   35 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVH   35 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHh-CCCeEEEEEC
Confidence            467899999999999999999986 5888888764

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.61  E-value=0.1  Score=40.48  Aligned_cols=32  Identities=31%  Similarity=0.363  Sum_probs=25.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (300)
                      -||+|+|+ |++|+.++-.+...+-. ||+ .+|.
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~-L~D~   34 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELV-LIDV   34 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEE-EECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEec
Confidence            48999998 99999999888765543 554 6774

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.59  E-value=0.31  Score=40.92  Aligned_cols=136  Identities=13%  Similarity=0.171  Sum_probs=81.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCcC-------CCCcceecCHHHHHhccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQ-------PLEIPVMSDLTMVLGSIS  102 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~~-------~~gv~v~~dl~~~l~~~~  102 (300)
                      ..+|+|-|+ |++|+.+++.+.+..+..++++.|.     ++.|-|..++.....       ..+.. +-+.++++.   
T Consensus        31 g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---  105 (234)
T d1b26a1          31 KATVAVQGF-GNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLE---  105 (234)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCE-EECHHHHHT---
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccce-eeccccccc---
Confidence            478999998 9999999998865568999999884     234555543321100       01111 235677885   


Q ss_pred             ccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---HHHH-HHHH
Q 022250          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GSIL-LQQA  175 (300)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv~l-l~~~  175 (300)
                        .++||++=+...... .+++.   +-...+|+|-- + ++++. ++  .+ .++|  ++|.|-|-.   ||.. -.+.
T Consensus       106 --~~~DI~~PcA~~~~I~~~~a~---~l~~~~I~e~AN~p~t~~a-~~--~L-~~rg--I~~~PD~~aNaGGVi~s~~E~  174 (234)
T d1b26a1         106 --LDVDILVPAALEGAIHAGNAE---RIKAKAVVEGANGPTTPEA-DE--IL-SRRG--ILVVPDILANAGGVTVSYFEW  174 (234)
T ss_dssp             --SCCSEEEECSCTTCBCHHHHT---TCCCSEEECCSSSCBCHHH-HH--HH-HHTT--CEEECHHHHTTHHHHHHHHHH
T ss_pred             --cccceeecchhcccccHHHHH---HhhhceEeecCCCCCCHHH-HH--HH-HHCC--eEEechHHhcCCCeeeeehhc
Confidence              689999977766555 33443   45678999875 3 55543 22  23 3444  577777643   3322 1344


Q ss_pred             HHHhccCCCCe
Q 022250          176 AISASFHYKNV  186 (300)
Q Consensus       176 a~~~~~~~~di  186 (300)
                      .+......|+.
T Consensus       175 ~qn~~~~~w~~  185 (234)
T d1b26a1         175 VQDLQSFFWDL  185 (234)
T ss_dssp             HHHHTTCCCCH
T ss_pred             ccccchhcccH
Confidence            55555445543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.58  E-value=0.053  Score=42.72  Aligned_cols=93  Identities=13%  Similarity=0.034  Sum_probs=54.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce---ecCHHHHHhcccccCCccEEEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .|.|+|+ |.+|...++.+... +...|.+++++..-.+...-.|..  .-+..   .++.++.+... ....+|++||+
T Consensus        31 tVlI~Ga-GGvG~~aiq~ak~~-G~~~vi~~~~~~~k~~~ak~lGa~--~~i~~~~~~~~~~~~~~~~-~~~g~D~vid~  105 (176)
T d2fzwa2          31 VCAVFGL-GGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGAT--ECINPQDFSKPIQEVLIEM-TDGGVDYSFEC  105 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHHTCS--EEECGGGCSSCHHHHHHHH-TTSCBSEEEEC
T ss_pred             EEEEecc-hhHHHHHHHHHHHH-hcCceEEEcccHHHHHHHHHhCCc--EEEeCCchhhHHHHHHHHH-cCCCCcEeeec
Confidence            5899998 89999999877754 555555666542111222112211  11111   12333333211 12468999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEE
Q 022250          114 TDASTVYDNVKQATAFGMRSV  134 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV  134 (300)
                      +-.+...+.+..+++.|.-++
T Consensus       106 ~G~~~~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2         106 IGNVKVMRAALEACHKGWGVS  126 (176)
T ss_dssp             SCCHHHHHHHHHTBCTTTCEE
T ss_pred             CCCHHHHHHHHHhhcCCceeE
Confidence            988888888888887775544

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.58  E-value=0.025  Score=45.76  Aligned_cols=91  Identities=11%  Similarity=0.125  Sum_probs=55.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .|.|.|++|.+|+..++..+. -+.+ ++++.+++.   . .                 .++..    ...+|.+||.+.
T Consensus        33 tVLI~gaaGgVG~~aiQlak~-~Ga~~vi~~~~~~e---~-~-----------------~~l~~----~~gad~vi~~~~   86 (187)
T d1vj1a2          33 TMVVSGAAGACGSLAGQIGHL-LGCSRVVGICGTQE---K-C-----------------LFLTS----ELGFDAAVNYKT   86 (187)
T ss_dssp             EEEESSTTSTTGGGHHHHHHH-TTCSEEEEEESSHH---H-H-----------------HHHHH----HSCCSEEEETTS
T ss_pred             EEEEECCCchhhHHHHHHHHH-cCCcceecccchHH---H-H-----------------hhhhh----cccceEEeeccc
Confidence            499999999999999997764 4554 444443321   1 0                 11111    146788888876


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCC
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~  156 (300)
                      ++... .++.....|+++|+.+.|-  +..+...+..+..|
T Consensus        87 ~~~~~-~~~~~~~~GvDvv~D~vGg--~~~~~~~~~l~~~G  124 (187)
T d1vj1a2          87 GNVAE-QLREACPGGVDVYFDNVGG--DISNTVISQMNENS  124 (187)
T ss_dssp             SCHHH-HHHHHCTTCEEEEEESSCH--HHHHHHHTTEEEEE
T ss_pred             hhHHH-HHHHHhccCceEEEecCCc--hhHHHHhhhccccc
Confidence            66443 3444446788888888873  34445555555444

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.54  E-value=0.042  Score=42.79  Aligned_cols=33  Identities=18%  Similarity=0.155  Sum_probs=26.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .||+|+|+ |++|..++-.+...+-.+|+ .+|..
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~-l~D~~   34 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIV   34 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEE-EECSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEE-EEeec
Confidence            48999998 99999999888766556855 47753

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=93.46  E-value=0.057  Score=44.23  Aligned_cols=65  Identities=17%  Similarity=0.154  Sum_probs=43.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |++|+.+++.+. .=++++.+ +|+.....+...      ......++++++++.      .+|+|+...
T Consensus        47 g~tvgIiG~-G~IG~~va~~l~-~fg~~v~~-~d~~~~~~~~~~------~~~~~~~~~l~~ll~------~sD~v~l~~  111 (191)
T d1gdha1          47 NKTLGIYGF-GSIGQALAKRAQ-GFDMDIDY-FDTHRASSSDEA------SYQATFHDSLDSLLS------VSQFFSLNA  111 (191)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-TTTCEEEE-ECSSCCCHHHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             ccceEEeec-ccchHHHHHHHH-hhcccccc-ccccccccchhh------cccccccCCHHHHHh------hCCeEEecC
Confidence            378999998 999999999776 45788764 665321111111      122344578999995      789988655

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.23  E-value=0.26  Score=38.27  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=26.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (300)
                      .-||+|+|+ |.+|+.++-.+...+-. ||+ .+|.+
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~-L~Di~   40 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDAN   40 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEeec
Confidence            369999998 99999999988765543 555 68853

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.18  E-value=0.19  Score=42.43  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=72.6

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhc-------CcCCCCcceecCHHHHHhccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCD-------MEQPLEIPVMSDLTMVLGSIS  102 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g-------~~~~~gv~v~~dl~~~l~~~~  102 (300)
                      -.+|+|-|. |++|+.+++.+.+.-+..++++.|..     +.|-|..++..       .....+... -+.++++.   
T Consensus        32 g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~---  106 (239)
T d1gtma1          32 GKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLE---  106 (239)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHH---
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-eccccccc---
Confidence            378999998 99999999988766799999998853     22334332220       000011222 25578886   


Q ss_pred             ccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                        .++||++=+...... .+++.   +-+..+|++-.  -++++..+   .+ .++|  ++|.|-|-
T Consensus       107 --~~~DIl~PcA~~~~I~~~~a~---~i~ak~I~e~AN~p~t~ea~~---~L-~~rg--I~~iPD~~  162 (239)
T d1gtma1         107 --LEVDVLAPAAIEEVITKKNAD---NIKAKIVAEVANGPVTPEADE---IL-FEKG--ILQIPDFL  162 (239)
T ss_dssp             --SCCSEEEECSCSCCBCTTGGG---GCCCSEEECCSSSCBCHHHHH---HH-HHTT--CEEECHHH
T ss_pred             --ccccEEeeccccccccHHHHH---hccccEEEecCCCCCCHHHHH---HH-HHCC--CEEecchh
Confidence              689999988765444 33333   56888999865  35664322   23 3444  46667654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.18  E-value=0.065  Score=42.56  Aligned_cols=94  Identities=18%  Similarity=0.225  Sum_probs=51.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-e--e--cCHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V--M--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v--~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      =+|+|+|+ |.+|...++.+... +.+.+.++|...  .. -+++   .++|.. +  +  +|+.+.+.+.. ...+|+|
T Consensus        30 ~~VlI~G~-G~iG~~~~~~ak~~-g~~~v~~~~~~~--~k-~~~a---~~~Ga~~~i~~~~~~~~~~i~~~t-~gg~D~v  100 (174)
T d1f8fa2          30 SSFVTWGA-GAVGLSALLAAKVC-GASIIIAVDIVE--SR-LELA---KQLGATHVINSKTQDPVAAIKEIT-DGGVNFA  100 (174)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHH-TCSEEEEEESCH--HH-HHHH---HHHTCSEEEETTTSCHHHHHHHHT-TSCEEEE
T ss_pred             CEEEEeCC-CHHHhhhhhccccc-ccceeeeeccHH--HH-HHHH---HHcCCeEEEeCCCcCHHHHHHHHc-CCCCcEE
Confidence            45899998 99999999877654 566666677532  10 1111   112211 1  1  23333332111 1357888


Q ss_pred             EEcCCchhHHHHH-HHHHHcCCCEEEeCC
Q 022250          111 IDFTDASTVYDNV-KQATAFGMRSVVYVP  138 (300)
Q Consensus       111 IDfT~p~~~~~~~-~~al~~G~~vVigTT  138 (300)
                      ||++-.....+.+ +.....|+-+++|.+
T Consensus       101 id~~G~~~~~~~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2         101 LESTGSPEILKQGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             EECSCCHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             EEcCCcHHHHHHHHhcccCceEEEEEeec
Confidence            8888655554443 444445666666654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.13  E-value=0.26  Score=36.16  Aligned_cols=87  Identities=13%  Similarity=0.074  Sum_probs=48.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee-cCHH-HHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLT-MVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~-~dl~-~~l~~~~~~~~~DVVIDf  113 (300)
                      -||.|+|+ |+.|..-++.+.+ .+.++.- +++.. ..+...++   ....+... ..++ +-+      ..+++|+-.
T Consensus        13 k~vlVvG~-G~va~~ka~~ll~-~ga~v~v-~~~~~-~~~~~~~~---~~~~i~~~~~~~~~~dl------~~~~lv~~a   79 (113)
T d1pjqa1          13 RDCLIVGG-GDVAERKARLLLE-AGARLTV-NALTF-IPQFTVWA---NEGMLTLVEGPFDETLL------DSCWLAIAA   79 (113)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTBEEEE-EESSC-CHHHHHHH---TTTSCEEEESSCCGGGG------TTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCeEEE-EeccC-ChHHHHHH---hcCCceeeccCCCHHHh------CCCcEEeec
Confidence            68999997 9999999998885 4676653 44332 12222232   12222221 1111 122      356666666


Q ss_pred             CCchhH-HHHHHHHHHcCCCEEE
Q 022250          114 TDASTV-YDNVKQATAFGMRSVV  135 (300)
Q Consensus       114 T~p~~~-~~~~~~al~~G~~vVi  135 (300)
                      |..+.. .+....|.+.|++|=+
T Consensus        80 t~d~~~n~~i~~~a~~~~ilVNv  102 (113)
T d1pjqa1          80 TDDDTVNQRVSDAAESRRIFCNV  102 (113)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEe
Confidence            543333 4555677777776643

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.07  E-value=0.075  Score=42.33  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=27.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .+.||+|+|+ |++|..++-.+...+-..=+..+|.+
T Consensus        18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3579999998 99999999988876554334467853

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.05  E-value=0.16  Score=41.85  Aligned_cols=109  Identities=17%  Similarity=0.234  Sum_probs=68.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|+|.|+ |++|+.+++.+.+ .+.+++ +.|.+.  .......    ..+... -+.++++.     .++|+++=+..
T Consensus        28 k~v~IqG~-G~VG~~~A~~L~~-~Gakvv-v~d~d~--~~~~~~~----~~g~~~-~~~~~~~~-----~~~DI~iPcA~   92 (201)
T d1c1da1          28 LTVLVQGL-GAVGGSLASLAAE-AGAQLL-VADTDT--ERVAHAV----ALGHTA-VALEDVLS-----TPCDVFAPCAM   92 (201)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCEE-CCGGGGGG-----CCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEE-EecchH--HHHHHHH----hhcccc-cCcccccc-----ccceeeecccc
Confidence            68999998 9999999998875 588887 455432  1111111    123222 24567775     68999997766


Q ss_pred             chhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH
Q 022250          116 ASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI  167 (300)
Q Consensus       116 p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si  167 (300)
                      .... .+++.   +-+..+|+|-. + ++++..   .+.-+++|  ++|.|-|-.
T Consensus        93 ~~~I~~~~a~---~i~ak~i~e~AN~p~~~~~~---~~~L~~rg--I~~iPD~la  139 (201)
T d1c1da1          93 GGVITTEVAR---TLDCSVVAGAANNVIADEAA---SDILHARG--ILYAPDFVA  139 (201)
T ss_dssp             SCCBCHHHHH---HCCCSEECCSCTTCBCSHHH---HHHHHHTT--CEECCHHHH
T ss_pred             cccccHHHHh---hhhhheeeccCCCCcchhhH---HHHhcccc--eEEEehhhh
Confidence            5544 33443   55789999866 2 554432   33345544  478888764

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.03  E-value=0.16  Score=43.07  Aligned_cols=116  Identities=15%  Similarity=0.161  Sum_probs=72.5

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCcC------------CCCcceecCHHHH
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQ------------PLEIPVMSDLTMV   97 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~~~~~g~~~------------~~gv~v~~dl~~~   97 (300)
                      -.+|+|-|+ |++|+..++.+.+ .+..++++.|..     +.|-|...+.....            ..+.....+.+++
T Consensus        31 g~~v~IqGf-GnVG~~~a~~L~~-~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  108 (242)
T d1v9la1          31 GKTVAIQGM-GNVGRWTAYWLEK-MGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAI  108 (242)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-cCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchh
Confidence            378999998 9999999998875 589999998842     33444443321100            1122233445677


Q ss_pred             HhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250           98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      +.     .++||++=+...... .+++.   +-+..+|++-- + ++++..+.    -+++|+  +|.|-|.
T Consensus       109 ~~-----~~~DIliPcA~~~~I~~~~a~---~i~ak~IvegAN~p~t~~a~~~----L~~rgI--~~~PD~~  166 (242)
T d1v9la1         109 FK-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAERI----LYERGV--VVVPDIL  166 (242)
T ss_dssp             GG-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHHHH----HHTTTC--EEECHHH
T ss_pred             cc-----ccccEEeecchhccccHHHHH---hcccCEEEecCCCCCChhHHHH----HHhCCe--EEeCchh
Confidence            75     689999988765444 33333   45778999865 3 56544222    344444  6667654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=92.84  E-value=0.17  Score=43.25  Aligned_cols=137  Identities=11%  Similarity=0.137  Sum_probs=84.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCc------CC---------CCcceecCHH
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDME------QP---------LEIPVMSDLT   95 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~------~~---------~gv~v~~dl~   95 (300)
                      .+|+|-|+ |++|+..++.+.+ .+..++++.|+     ++.|-|..++....      ..         .+... -+.+
T Consensus        37 ~~v~IQGf-GnVG~~~a~~L~e-~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  113 (255)
T d1bgva1          37 KTVALAGF-GNVAWGAAKKLAE-LGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQF-FPGE  113 (255)
T ss_dssp             CEEEECCS-SHHHHHHHHHHHH-HTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEE-EETC
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-cCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCcee-echh
Confidence            68999998 9999999999875 58999999884     34455543322100      00         01111 1234


Q ss_pred             HHHhcccccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---HH
Q 022250           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GS  169 (300)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv  169 (300)
                      +++.     .++||+|=+...... .+++......|+.+|++-- + .+++..   +.+.++++|  ++.|-+-.   ||
T Consensus       114 ~~~~-----~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~---~~ll~~~gI--~vvPD~laNaGGV  183 (255)
T d1bgva1         114 KPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL---RFLMQQPNM--VVAPSKAVNAGGV  183 (255)
T ss_dssp             CGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH---HHHHHCTTC--EEECHHHHTTHHH
T ss_pred             hccc-----ccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHH---HHHHHhcCC--EEehHhhhcCCce
Confidence            4554     689999866654443 7788888889999999866 3 555432   223455444  66676532   43


Q ss_pred             HHH-HHHHHHhccCCCC
Q 022250          170 ILL-QQAAISASFHYKN  185 (300)
Q Consensus       170 ~ll-~~~a~~~~~~~~d  185 (300)
                      ..- .+..+.+..+.|+
T Consensus       184 ivSy~E~~qn~~~~~w~  200 (255)
T d1bgva1         184 LVSGFEMSQNSERLSWT  200 (255)
T ss_dssp             HHHHHHHHHHHHTSCCC
T ss_pred             eeehhhhhhhhhhhhhh
Confidence            321 3455666555554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.81  E-value=0.029  Score=44.94  Aligned_cols=95  Identities=16%  Similarity=0.150  Sum_probs=61.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhccc---ccCCccEEEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS---QSKARAVVIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~---~~~~~DVVIDf  113 (300)
                      .|.|.|++|..|...++..+ .-++++++.+.++.. .+.-.      ++|....-+.++...+..   ....+|+|+|.
T Consensus        26 ~VLV~gaaGgVG~~avQlAk-~~Ga~Viat~~s~~k-~~~~~------~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~   97 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLN-KRGYDVVASTGNREA-ADYLK------QLGASEVISREDVYDGTLKALSKQQWQGAVDP   97 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHH-HHTCCEEEEESSSST-HHHHH------HHTCSEEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             EEEEeCCcchHHHHHHHHHH-HcCCceEEEecCHHH-HHHHH------hhcccceEeccchhchhhhcccCCCceEEEec
Confidence            39999999999999999765 468999987765421 11111      223222222333222111   12458999999


Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      --.+...+.+......|.-+++|.++
T Consensus        98 vgg~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          98 VGGKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             CCTHHHHHHHTTEEEEEEEEECCCSS
T ss_pred             CcHHHHHHHHHHhccCceEEEeeccC
Confidence            88887777777666777878888764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.73  E-value=0.084  Score=41.70  Aligned_cols=130  Identities=13%  Similarity=0.092  Sum_probs=66.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEEEEcC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .|.|+|+ |.+|...++.+... +...+.++|++..-.+...-.|.  . .+-.+  ++.++.++. .....+|++||++
T Consensus        35 ~vli~Ga-G~vG~~~~~~a~~~-g~~~vv~~~~~~~k~~~~~~~ga--~-~~i~~~~~~~~~~~~~-~~~~g~d~vid~~  108 (172)
T d1h2ba2          35 YVAIVGV-GGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAERLGA--D-HVVDARRDPVKQVMEL-TRGRGVNVAMDFV  108 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHHHTTC--S-EEEETTSCHHHHHHHH-TTTCCEEEEEESS
T ss_pred             EEEEeCC-ChHHHHHHHHHHhh-cCcccccccchhHHHHHHhhccc--c-eeecCcccHHHHHHHh-hCCCCceEEEEec
Confidence            5899998 99999999887654 44445556653210111111111  0 11111  233444431 1123589999999


Q ss_pred             CchhHHHHHHHHHH-cCCCEEEeCCC-CCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          115 DASTVYDNVKQATA-FGMRSVVYVPH-IQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       115 ~p~~~~~~~~~al~-~G~~vVigTTG-~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      ......+....+++ .|.-+++|-++ .+   .+...-..++  +.+.-+..++.-  -+.++.+.+
T Consensus       109 g~~~~~~~a~~~l~~~G~iv~~G~~~~~~---~~~~~l~~k~--~~i~Gs~~~~~~--d~~~~l~l~  168 (172)
T d1h2ba2         109 GSQATVDYTPYLLGRMGRLIIVGYGGELR---FPTIRVISSE--VSFEGSLVGNYV--ELHELVTLA  168 (172)
T ss_dssp             CCHHHHHHGGGGEEEEEEEEECCCSSCCC---CCHHHHHHTT--CEEEECCSCCHH--HHHHHHHHH
T ss_pred             CcchHHHHHHHHHhCCCEEEEEeCccccc---CCHHHHHhCC--cEEEEEEecCHH--HHHHHHHHH
Confidence            77666665555544 45555566432 11   1111112333  666655555543  455555444

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.051  Score=43.00  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=54.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee--cCHHHHHhcccccCCccEEEEcC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      +|.|+|++|.+|...++.++ ..++++++...++.. .+...-.|.   ..+-.+  .|+.+-+.++.....+|+++|+.
T Consensus        31 ~Vlv~ga~g~vG~~~iqlak-~~Ga~Vi~~~~s~~k-~~~~~~lGa---~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~  105 (179)
T d1qora2          31 QFLFHAAAGGVGLIACQWAK-ALGAKLIGTVGTAQK-AQSALKAGA---WQVINYREEDLVERLKEITGGKKVRVVYDSV  105 (179)
T ss_dssp             EEEESSTTBHHHHHHHHHHH-HHTCEEEEEESSHHH-HHHHHHHTC---SEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             EEEEEccccccchHHHHHHH-HhCCeEeecccchHH-HHHHHhcCC---eEEEECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence            69999998999999999766 568888876554210 111111111   011111  23433332221234578888888


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      ..+............|.-++++..
T Consensus       106 g~~~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2         106 GRDTWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             CGGGHHHHHHTEEEEEEEEECCCT
T ss_pred             cHHHHHHHHHHHhcCCeeeecccc
Confidence            776655555555555655555554

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.13  Score=45.03  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=25.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      +|.|.|+||-+|+.+++.+.+. +.+++++.
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~-g~~V~~~~   32 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEK-GYEVHGIK   32 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC-cCEEEEEE
Confidence            3459999999999999999864 89988654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.46  E-value=0.93  Score=35.94  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=24.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      |||+|+|. |.+|-.++..+ + .+++++| +|.+
T Consensus         1 MkI~ViGl-G~vGl~~a~~~-a-~g~~V~g-~Din   31 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLL-S-LQNEVTI-VDIL   31 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-T-TTSEEEE-ECSC
T ss_pred             CEEEEECC-ChhHHHHHHHH-H-CCCcEEE-EECC
Confidence            78999997 99999988654 3 5899885 6743

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.36  E-value=0.57  Score=35.23  Aligned_cols=104  Identities=10%  Similarity=0.026  Sum_probs=64.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      |||.+.+. -.--+...+.+.+..++++.- . ....                  ..+.-+.+      .++|+++-+..
T Consensus         1 MKIl~~~~-~~~e~~~l~~~~~~~~~~v~~-~-~~~~------------------~~~~~~~~------~~~d~ii~~~~   53 (131)
T d1dxya2           1 MKIIAYGA-RVDEIQYFKQWAKDTGNTLEY-H-TEFL------------------DENTVEWA------KGFDGINSLQT   53 (131)
T ss_dssp             CEEEECSC-CTTTHHHHHHHHHHHCCEEEE-C-SSCC------------------CTTGGGGG------TTCSEEEECCS
T ss_pred             CEEEEEec-CcCcHHHHHHHHHHcCeEEEE-c-CCCC------------------CHHHHHHh------cCCCEEEEecC
Confidence            57888876 455566666666556776542 1 1110                  01111222      47898876665


Q ss_pred             chhHHHHHHHHHHcCCCEEEe-CCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          116 ASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVig-TTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      .....+.+..+-+.+..+|.- ++|++--+    .++|+++||++.-.|+++.-..
T Consensus        54 ~~~~~~vl~~l~~~~Lk~I~~~~vG~d~ID----~~~a~~~gI~V~n~P~~~~~aV  105 (131)
T d1dxya2          54 TPYAAGVFEKMHAYGIKFLTIRNVGTDNID----MTAMKQYGIRLSNVPAYTETAV  105 (131)
T ss_dssp             SCBCHHHHHHHHHTTCCEEEESSSCCTTBC----HHHHHHTTCEEECCTTSSHHHH
T ss_pred             CCCCHHHHhhcccCCeEEEEEccccccccc----ccccccceEEEEeCCCCCchhH
Confidence            555566667666777777754 35886422    3567789999999999887554

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.29  E-value=0.1  Score=41.55  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=27.3

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +..||+|+|+ |++|+.++-.+...+-+.=+..+|.+
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3579999998 99999999988866544334467853

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.26  E-value=0.068  Score=43.13  Aligned_cols=96  Identities=17%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceec-CHHHHHhcccccCCccEEEEcCC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      +|.|.|++|.+|...++.+. .-++++++...++.. .+.....|.  .. +--|+ +.++.... .....+|+|+|.--
T Consensus        34 ~VLI~gaaGGVG~~aiQlak-~~Ga~Viat~~s~~k-~~~~~~lGa--~~-vi~~~~~~~~~~~~-~~~~gvD~vid~vg  107 (176)
T d1xa0a2          34 PVLVTGATGGVGSLAVSMLA-KRGYTVEASTGKAAE-HDYLRVLGA--KE-VLAREDVMAERIRP-LDKQRWAAAVDPVG  107 (176)
T ss_dssp             CEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCTTC-HHHHHHTTC--SE-EEECC----------CCSCCEEEEEECST
T ss_pred             EEEEEeccchHHHHHHHHHH-HcCCceEEecCchHH-HHHHHhccc--ce-eeecchhHHHHHHH-hhccCcCEEEEcCC
Confidence            49999999999999999765 569999987764321 111111121  11 11122 22232221 12346899999776


Q ss_pred             chhHHHHHHHHHHcCCCEEEeCC
Q 022250          116 ASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      .+.....+......|.=+++|.+
T Consensus       108 g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         108 GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             chhHHHHHHHhCCCceEEEeecc
Confidence            55545555444455555567766

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.19  E-value=0.59  Score=36.12  Aligned_cols=31  Identities=32%  Similarity=0.380  Sum_probs=24.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +|+|+|+ |.||...++.+. ..+.++++ +|++
T Consensus        29 ~vlV~G~-G~vG~~~~~~ak-~~Ga~vi~-v~~~   59 (170)
T d1e3ja2          29 TVLVIGA-GPIGLVSVLAAK-AYGAFVVC-TARS   59 (170)
T ss_dssp             EEEEECC-SHHHHHHHHHHH-HTTCEEEE-EESC
T ss_pred             EEEEEcc-cccchhhHhhHh-hhcccccc-cchH
Confidence            6999997 999999998765 56788775 5543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.17  E-value=0.83  Score=35.53  Aligned_cols=95  Identities=8%  Similarity=0.038  Sum_probs=50.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee---cCHHHHHhcccccCCccEEEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~---~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      .|.|+|+ |.+|...+..++..-..+++ +++++..-.+...-.|.  ..-+...   +++++.+... ....+|++||+
T Consensus        31 tVlV~Ga-GG~G~~~~~~~~~~g~~~Vi-~~~~~~~k~~~a~~~Ga--~~~i~~~~~~~~~~~~~~~~-~~~G~D~vid~  105 (176)
T d2jhfa2          31 TCAVFGL-GGVGLSVIMGCKAAGAARII-GVDINKDKFAKAKEVGA--TECVNPQDYKKPIQEVLTEM-SNGGVDFSFEV  105 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCSEEE-EECSCGGGHHHHHHTTC--SEEECGGGCSSCHHHHHHHH-TTSCBSEEEEC
T ss_pred             EEEEECC-CCcHHHHHHHHHHcCCceEE-eecCcHHHHHHHHHhCC--eeEEecCCchhHHHHHHHHH-hcCCCCEEEec
Confidence            4999999 88999999888765444544 45543210111111111  0011111   2233333211 12368999999


Q ss_pred             CCchhHHHHHHHHHHcC-CCEEEe
Q 022250          114 TDASTVYDNVKQATAFG-MRSVVY  136 (300)
Q Consensus       114 T~p~~~~~~~~~al~~G-~~vVig  136 (300)
                      +......+.+...+..+ .-++++
T Consensus       106 ~G~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2         106 IGRLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             SCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCchhHHHHHHHHHhcCCcceEEe
Confidence            87777766666666554 333333

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.52  E-value=0.17  Score=39.59  Aligned_cols=133  Identities=15%  Similarity=0.100  Sum_probs=64.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce-e--cCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M--SDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v-~--~dl~~~l~~~~~~~~~DVVID  112 (300)
                      =+|.|+|++|.+|...++.+......++ -+++++..-.+...-.|.  .  ..+ +  .|..+.+.+......+|+++|
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V-~~~~~~~~~~~~~~~~Ga--~--~~i~~~~~~~~~~~~~~~~~~~~d~vid  103 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATI-IGVDVREEAVEAAKRAGA--D--YVINASMQDPLAEIRRITESKGVDAVID  103 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEE-EEEESSHHHHHHHHHHTC--S--EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CEEEEEeccccceeeeeecccccccccc-cccccchhhHHHHHHcCC--c--eeeccCCcCHHHHHHHHhhcccchhhhc
Confidence            4599999889999999988776543454 445543210111111121  0  111 1  222222211111235899999


Q ss_pred             cCCchhHHHHHHHHHH-cCCCEEEeCCCCCH-HHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          113 FTDASTVYDNVKQATA-FGMRSVVYVPHIQL-ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       113 fT~p~~~~~~~~~al~-~G~~vVigTTG~~~-e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      ++......+.+..+++ .|.=+++|.++-+. -....+  ..++  +.+.-+.+.+..  -+.++.+.+
T Consensus       104 ~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~--~~k~--i~i~Gs~~~~~~--d~~~~l~lv  166 (170)
T d1jvba2         104 LNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLI--TLSE--IQFVGSLVGNQS--DFLGIMRLA  166 (170)
T ss_dssp             SCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHH--HHHT--CEEEECCSCCHH--HHHHHHHHH
T ss_pred             ccccchHHHhhhhhcccCCEEEEeccccCccccCHHHH--HhCC--cEEEEEecCCHH--HHHHHHHHH
Confidence            8876655555444444 44555566543110 011112  2233  666666665543  344444433

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.12  Score=40.95  Aligned_cols=71  Identities=10%  Similarity=0.198  Sum_probs=41.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCC-CCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~-~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .+|.|+|+ |..+|+++-++.+. +.+ +-+++++.  ..+..++..-.. ..+... ++++...     .++|++|.+|
T Consensus        19 k~vlIlGa-GGaarai~~al~~~-g~~-i~I~nRt~--~ka~~l~~~~~~~~~~~~~-~~~~~~~-----~~~dliIN~T   87 (170)
T d1nyta1          19 LRILLIGA-GGASRGVLLPLLSL-DCA-VTITNRTV--SRAEELAKLFAHTGSIQAL-SMDELEG-----HEFDLIINAT   87 (170)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCE-EEEECSSH--HHHHHHHHHTGGGSSEEEC-CSGGGTT-----CCCSEEEECC
T ss_pred             CEEEEECC-cHHHHHHHHHhccc-ceE-EEeccchH--HHHHHHHHHHhhccccccc-ccccccc-----cccceeeccc
Confidence            68999998 99999999988764 677 55677643  222222210011 122222 3333322     4789999998


Q ss_pred             Cch
Q 022250          115 DAS  117 (300)
Q Consensus       115 ~p~  117 (300)
                      +.-
T Consensus        88 p~G   90 (170)
T d1nyta1          88 SSG   90 (170)
T ss_dssp             SCG
T ss_pred             ccC
Confidence            643

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.39  E-value=0.044  Score=43.61  Aligned_cols=121  Identities=12%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .||.|+|+ |+++++++..+.+ .++.-+-+++++.  +.+..+.   ...+....++++        ..++|+||.+|+
T Consensus        18 ~~vlIlGa-GGaarai~~aL~~-~g~~~I~I~nR~~--~ka~~L~---~~~~~~~~~~~~--------~~~~DliINaTp   82 (167)
T d1npya1          18 AKVIVHGS-GGMAKAVVAAFKN-SGFEKLKIYARNV--KTGQYLA---ALYGYAYINSLE--------NQQADILVNVTS   82 (167)
T ss_dssp             SCEEEECS-STTHHHHHHHHHH-TTCCCEEEECSCH--HHHHHHH---HHHTCEEESCCT--------TCCCSEEEECSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-CCCCEEEEecccH--HHHHHHH---Hhhhhhhhhccc--------ccchhhheeccc
Confidence            68999998 9999999998875 4554445666643  2222222   112222222211        147899999886


Q ss_pred             c----hhH---HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          116 A----STV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       116 p----~~~---~~~~~~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      .    ..-   ...-...+..+. +|+-- -+++.+ -.+.+.|++.|.+++-    .+++ |+.|++.++
T Consensus        83 iGm~~~~~~~~l~~~~~~~~~~~-~v~D~-vY~P~~-T~ll~~A~~~G~~~i~----Gl~M-li~Qa~~~f  145 (167)
T d1npya1          83 IGMKGGKEEMDLAFPKAFIDNAS-VAFDV-VAMPVE-TPFIRYAQARGKQTIS----GAAV-IVLQAVEQF  145 (167)
T ss_dssp             TTCTTSTTTTSCSSCHHHHHHCS-EEEEC-CCSSSS-CHHHHHHHHTTCEEEC----HHHH-HHHHHHHHH
T ss_pred             cCCccccccccccccHhhcCCcc-eEEEE-eeccCC-CHHHHHHHHCCCeEEE----CHHH-HHHHHHHHH
Confidence            2    110   011122233333 44332 112211 1356667888887653    3443 335555444

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.32  E-value=0.68  Score=38.67  Aligned_cols=82  Identities=11%  Similarity=0.122  Sum_probs=53.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      ..+.|.|+++.||+++++.+.+ .+..++. ++++.  +...+.              .+++.+    ....+   +..|
T Consensus         6 K~~lITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~--------------~~~l~~----~~g~~~~~~~~D   63 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAE-AGCSVVV-ASRNL--EEASEA--------------AQKLTE----KYGVETMAFRCD   63 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH--------------HHHHHH----HHCCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH--------------HHHHHH----HhCCcEEEEEcc
Confidence            3578999999999999999885 5788654 55432  111111              112221    11223   3568


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .|.++.+.+.+..+.+.  +++++|=..|
T Consensus        64 v~~~~~v~~~~~~~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          64 VSNYEEVKKLLEAVKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            89999999888888775  6899986654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.31  E-value=0.24  Score=39.94  Aligned_cols=61  Identities=23%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|+|+ |++|+.+++.+. .-++++.+ +|+..  ..        .......+.++++++.      .+|+|+...
T Consensus        44 ~~~vgiiG~-G~IG~~va~~l~-~fg~~v~~-~d~~~--~~--------~~~~~~~~~~l~ell~------~sDii~i~~  104 (188)
T d1sc6a1          44 GKKLGIIGY-GHIGTQLGILAE-SLGMYVYF-YDIEN--KL--------PLGNATQVQHLSDLLN------MSDVVSLHV  104 (188)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHH-HTTCEEEE-ECSSC--CC--------CCTTCEECSCHHHHHH------HCSEEEECC
T ss_pred             ceEEEEeec-ccchhhhhhhcc-cccceEee-ccccc--cc--------hhhhhhhhhhHHHHHh------hccceeecc
Confidence            478999998 999999999776 45888775 55432  11        1112233568999995      689888543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=90.89  E-value=0.56  Score=39.22  Aligned_cols=84  Identities=23%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      ..+.|.|+++++|+++++.+.+ .++.++. ++++.  .+..+.              .+++.++.  ..++ -+..|.|
T Consensus        10 K~alITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~--------------~~~~~~~~--g~~~~~~~~Dv~   69 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAA-AGANVAV-IYRSA--ADAVEV--------------TEKVGKEF--GVKTKAYQCDVS   69 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH-TTEEEEE-EESSC--TTHHHH--------------HHHHHHHH--TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH--------------HHHHHHHh--CCceEEEEccCC
Confidence            4688889999999999999885 6888654 55432  111111              11221100  0111 2456889


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  +++++|-..|
T Consensus        70 ~~~~v~~~~~~~~~~~g~iDilVnnAg   96 (260)
T d1h5qa_          70 NTDIVTKTIQQIDADLGPISGLIANAG   96 (260)
T ss_dssp             CHHHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCcEeccccc
Confidence            999999888888765  5788876544

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.84  E-value=0.1  Score=46.02  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=28.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      |||.|.|++|-+|+.+++.++++.+.++++ +|
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~-~D   34 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVI-VD   34 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEE-EE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEE-Ee
Confidence            599999999999999999998878999886 54

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=90.81  E-value=0.78  Score=36.23  Aligned_cols=70  Identities=20%  Similarity=0.117  Sum_probs=42.0

Q ss_pred             cceEEEEcCCchHHHH--HHHHHHhcCC---cEEEEEEecCCC-----Ccchh---hhhcCcCCCCcceecCHHHHHhcc
Q 022250           35 NIKVIINGAVKEIGRA--AVIAVTKARG---MEVAGAIDSHSV-----GEDIG---MVCDMEQPLEIPVMSDLTMVLGSI  101 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~--i~~~i~~~~~---~eLvg~vd~~~~-----g~d~~---~~~g~~~~~gv~v~~dl~~~l~~~  101 (300)
                      .|||+|+|+ |..|..  +...+...+.   -||+ .+|.++.     ..+..   ...+  .+..+..++|+++++.  
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~--~~~~i~~~td~~eaL~--   75 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVT-LMDIDEERLDAILTIAKKYVEEVG--ADLKFEKTMNLDDVII--   75 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEE-EECSCHHHHHHHHHHHHHHHHHTT--CCCEEEEESCHHHHHT--
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEE-EEeCCchHHHHHHHHHHHHHHhcC--CCeEEEEeCChhhccc--
Confidence            489999998 999965  3444444443   3666 5775420     01111   1111  2345556789999984  


Q ss_pred             cccCCccEEEEcC
Q 022250          102 SQSKARAVVIDFT  114 (300)
Q Consensus       102 ~~~~~~DVVIDfT  114 (300)
                          ++|+||...
T Consensus        76 ----dad~Vv~~~   84 (171)
T d1obba1          76 ----DADFVINTA   84 (171)
T ss_dssp             ----TCSEEEECC
T ss_pred             ----CCCeEeeec
Confidence                899998543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.35  E-value=0.086  Score=41.35  Aligned_cols=26  Identities=19%  Similarity=0.475  Sum_probs=22.6

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcC
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKAR   59 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~   59 (300)
                      .+|||.|+||+|++|+.++-.+...+
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            36999999999999999999887644

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.34  E-value=0.53  Score=38.93  Aligned_cols=84  Identities=14%  Similarity=0.135  Sum_probs=52.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVI  111 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVI  111 (300)
                      |..|.|.|+++++|+++++.+.+  ..+..|+.. +++.  ..+.               +++++...   ..++. +.+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~-~r~~--~~~~---------------~~~~~~~~---~~~~~~~~~   60 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTT-CRNR--EQAK---------------ELEDLAKN---HSNIHILEI   60 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEE-ESCT--TSCH---------------HHHHHHHH---CTTEEEEEC
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEE-ECCH--HHHH---------------HHHHHHhc---CCcEEEEEE
Confidence            34699999999999999998864  567887754 3432  1111               12232221   11222 456


Q ss_pred             EcCCchhHHHHHHHH---HH-cCCCEEEeCCC
Q 022250          112 DFTDASTVYDNVKQA---TA-FGMRSVVYVPH  139 (300)
Q Consensus       112 DfT~p~~~~~~~~~a---l~-~G~~vVigTTG  139 (300)
                      |.|.++...+.+...   .+ .++++++-.-|
T Consensus        61 Dvs~~~~v~~~~~~i~~~~~~~~iDiLvnNAg   92 (248)
T d1snya_          61 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAG   92 (248)
T ss_dssp             CTTCGGGHHHHHHHHHHHHGGGCCSEEEECCC
T ss_pred             EeccHHHHHHHHhhhHHHhhcCCcceEEeecc
Confidence            888988887776654   23 45888876543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.33  E-value=0.33  Score=37.88  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=27.0

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      +.||+|+|+ |++|+.++-.+....=.||+ .+|.+
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~-L~Di~   36 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIV   36 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEE-EEecc
Confidence            479999997 99999999877766545755 78854

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.29  E-value=0.55  Score=35.88  Aligned_cols=121  Identities=15%  Similarity=0.205  Sum_probs=62.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVV  110 (300)
                      .|.|+|+ |++|+.+++.+.+. +.+++. +|.++.  -.....+    ...++.+.    .|.+ .+.+. .-.++|++
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~-~~~v~v-Id~d~~~~~~~~~~~----~~~~~~vi~Gd~~d~~-~L~~a-~i~~a~~v   75 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQR-GQNVTV-ISNLPEDDIKQLEQR----LGDNADVIPGDSNDSS-VLKKA-GIDRCRAI   75 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHT-TCCEEE-EECCCHHHHHHHHHH----HCTTCEEEESCTTSHH-HHHHH-TTTTCSEE
T ss_pred             EEEEECC-CHHHHHHHHHHHHc-CCCEEE-EeccchhHHHHHHHh----hcCCcEEEEccCcchH-HHHHh-ccccCCEE
Confidence            4899998 99999999998754 666664 443220  0011111    12344432    2332 22210 11467888


Q ss_pred             EEcCCchhH-HHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHH
Q 022250          111 IDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (300)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~  173 (300)
                      |-.|.-+.. ...+..+.+.  .+++|+-+  .+++..+.+    ++.|+-.+++|. .++.+.+.
T Consensus        76 i~~~~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l----~~~Gad~vi~p~-~~~~~~l~  134 (153)
T d1id1a_          76 LALSDNDADNAFVVLSAKDMSSDVKTVLAV--SDSKNLNKI----KMVHPDIILSPQ-LFGSEILA  134 (153)
T ss_dssp             EECSSCHHHHHHHHHHHHHHTSSSCEEEEC--SSGGGHHHH----HTTCCSEEECHH-HHHHHHHH
T ss_pred             EEccccHHHHHHHHHHHHHhCCCCceEEEE--cCHHHHHHH----HHCCCCEEECHH-HHHHHHHH
Confidence            866654433 3344444443  34555443  233443344    445677788874 44444443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.27  E-value=0.23  Score=38.52  Aligned_cols=128  Identities=16%  Similarity=0.085  Sum_probs=64.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc--e-e--cCHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--V-M--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~--v-~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      -+|.|+|+ |.+|...++.++. -+.+++++ |+++  .. -+++   .+.|..  + +  ++..+.+.+  .....|++
T Consensus        29 ~~VlV~Ga-G~vG~~~~~~ak~-~G~~Vi~~-~~~~--~~-~~~a---~~~Ga~~~i~~~~~~~~~~~~~--~~~g~~~~   97 (166)
T d1llua2          29 QWVAISGI-GGLGHVAVQYARA-MGLHVAAI-DIDD--AK-LELA---RKLGASLTVNARQEDPVEAIQR--DIGGAHGV   97 (166)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEEE-ESCH--HH-HHHH---HHTTCSEEEETTTSCHHHHHHH--HHSSEEEE
T ss_pred             CEEEEeec-cccHHHHHHHHHH-cCCcccee-cchh--hH-HHhh---hccCccccccccchhHHHHHHH--hhcCCccc
Confidence            36999998 9999999987764 57887764 5432  11 1111   122221  1 1  233333221  01356777


Q ss_pred             EEcCCchhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHh
Q 022250          111 IDFTDASTVYDNVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~-~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~  179 (300)
                      |+++......+....+++ .|+-+++|.++-.. ... +..+.. +++.+.-+.+.+.-  -+.++.+.+
T Consensus        98 i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~-~~~-~~~~~~-k~~~i~Gs~~~~~~--d~~e~l~l~  162 (166)
T d1llua2          98 LVTAVSNSAFGQAIGMARRGGTIALVGLPPGDF-PTP-IFDVVL-KGLHIAGSIVGTRA--DLQEALDFA  162 (166)
T ss_dssp             EECCSCHHHHHHHHTTEEEEEEEEECCCCSSEE-EEE-HHHHHH-TTCEEEECCSCCHH--HHHHHHHHH
T ss_pred             ccccccchHHHHHHHHhcCCcEEEEEEecCCCc-cCC-HHHHHh-CCcEEEEEeecCHH--HHHHHHHHH
Confidence            777754445454444444 45666677653211 111 122222 23676655555532  345554443

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.23  E-value=0.31  Score=44.51  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=25.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      .||.|+|+ |.+|..+++.+.. .++.=+-++|.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~-~Gvg~i~lvD~   69 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLAL-SGFRQIHVIDM   69 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHT-TTCCCEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-cCCCeEEEEEC
Confidence            58999999 9999999999874 56644557774

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.12  E-value=1  Score=37.27  Aligned_cols=73  Identities=21%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .++.|.|+++.+|+++++.+.+ .+.+++. ++++.  ...                  +         .-..+.+|.|.
T Consensus         8 K~~lITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~~------------------~---------~~~~~~~Dv~~   56 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAA-DGHKVAV-THRGS--GAP------------------K---------GLFGVEVDVTD   56 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESSS--CCC------------------T---------TSEEEECCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCc--chh------------------c---------CceEEEEecCC
Confidence            5689999999999999999885 6888764 44432  000                  0         11235677888


Q ss_pred             chhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      ++...+.+..+.+.  +++++|-..|
T Consensus        57 ~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1          57 SDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             HHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             HHHHHHHHHHHHHhcCCceEEEeeec
Confidence            88888888777765  5778875544

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.04  E-value=0.37  Score=41.53  Aligned_cols=28  Identities=25%  Similarity=0.488  Sum_probs=24.7

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      |.|.|++|-+|+.+++.+.+ .+.+++++
T Consensus         4 ILVTGatGfIG~~lv~~Ll~-~g~~V~~~   31 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIE-NGYDCVVA   31 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             EEEeCCCcHHHHHHHHHHHH-CcCeEEEE
Confidence            88999999999999999886 47898874

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.02  E-value=1  Score=37.50  Aligned_cols=82  Identities=27%  Similarity=0.393  Sum_probs=51.9

Q ss_pred             eE-EEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        37 kV-~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      || .|.|+++.+|+++++.+.+ .+..++ +.+++.  ..+.++.              +++-+.   ..++. +..|.|
T Consensus         2 KValITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~~--------------~~i~~~---g~~~~~~~~Dv~   60 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVK-DGFAVA-IADYND--ATAKAVA--------------SEINQA---GGHAVAVKVDVS   60 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH--------------HHHHhc---CCcEEEEEeeCC
Confidence            66 5679999999999999885 588865 456542  1111111              111110   01222 356889


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  +++++|-..|
T Consensus        61 ~~~~v~~~~~~~~~~~g~iDilVnnAG   87 (255)
T d1gega_          61 DRDQVFAAVEQARKTLGGFDVIVNNAG   87 (255)
T ss_dssp             SHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCccEEEeccc
Confidence            999999988888774  5888885443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.93  E-value=0.21  Score=42.64  Aligned_cols=32  Identities=25%  Similarity=0.289  Sum_probs=27.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      .++.|.|+||-+|+.+++.+.+ .+++++++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~-~g~~V~~~~r   33 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLG-KGYEVHGLIR   33 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CEEEEeCCccHHHHHHHHHHHH-CcCEEEEEEC
Confidence            4788999999999999999986 6899987664

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.88  E-value=0.51  Score=39.28  Aligned_cols=79  Identities=27%  Similarity=0.358  Sum_probs=52.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .++.|.|+++++|+++++.+.+ .+++++. .+++.  ...                  +++.+++   ..--+..|++.
T Consensus         6 K~~lITGas~GIG~aia~~l~~-~G~~V~~-~~r~~--~~l------------------~~~~~~~---~~~~~~~Dv~~   60 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAK-EGARLVA-CDIEE--GPL------------------REAAEAV---GAHPVVMDVAD   60 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHH------------------HHHHHTT---TCEEEECCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHHc---CCeEEEEecCC
Confidence            3588899999999999999885 5888664 55432  111                  2222210   11125678999


Q ss_pred             chhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      ++...+.+..+.+.  +++++|=..|
T Consensus        61 ~~~v~~~~~~~~~~~g~iDilVnnAG   86 (242)
T d1ulsa_          61 PASVERGFAEALAHLGRLDGVVHYAG   86 (242)
T ss_dssp             HHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhcCCceEEEECCc
Confidence            99998888887765  6888885443

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=89.86  E-value=1.6  Score=36.88  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHh
Q 022250           36 IKVIINGAVKEIGRAAVIAVTK   57 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~   57 (300)
                      |||.|.|++|-+|+.+++.+.+
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~   22 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLA   22 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHH
Confidence            6899999999999999998875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.70  E-value=0.85  Score=35.32  Aligned_cols=85  Identities=16%  Similarity=0.182  Sum_probs=45.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc-e--e---c-CHHHHHhcccccCCccE
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V--M---S-DLTMVLGSISQSKARAV  109 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~-v--~---~-dl~~~l~~~~~~~~~DV  109 (300)
                      +|+|+|+ |.+|-..+..+...-..+++ ++|+...-.+..      .++|.. +  +   + ..++.... .....+|+
T Consensus        31 ~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi-~~~~~~~rl~~a------~~~GAd~~in~~~~~~~~~~~~~~-~~~~G~d~  101 (175)
T d1cdoa2          31 TCAVFGL-GAVGLAAVMGCHSAGAKRII-AVDLNPDKFEKA------KVFGATDFVNPNDHSEPISQVLSK-MTNGGVDF  101 (175)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCSEEE-EECSCGGGHHHH------HHTTCCEEECGGGCSSCHHHHHHH-HHTSCBSE
T ss_pred             EEEEEec-CCccchHHHHHHHHhhchhe-eecchHHHHHHH------HHcCCcEEEcCCCcchhHHHHHHh-hccCCcce
Confidence            5999998 88999888877754444444 566542111111      122221 1  1   1 12222210 01135788


Q ss_pred             EEEcCCchhHHHHHHHHHHcC
Q 022250          110 VIDFTDASTVYDNVKQATAFG  130 (300)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G  130 (300)
                      ++|++-...+.+.+..++..|
T Consensus       102 vid~~G~~~~~~~a~~~~~~g  122 (175)
T d1cdoa2         102 SLECVGNVGVMRNALESCLKG  122 (175)
T ss_dssp             EEECSCCHHHHHHHHHTBCTT
T ss_pred             eeeecCCHHHHHHHHHHhhCC
Confidence            888887766666666554444

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.64  E-value=0.33  Score=38.98  Aligned_cols=63  Identities=17%  Similarity=0.141  Sum_probs=42.3

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      ..+|+|+|+ |++|+.+++.+.. =++++++ +|+... .....      ..++. +.++++++.      .+|+|+-..
T Consensus        44 ~k~vgiiG~-G~IG~~va~~~~~-fg~~v~~-~d~~~~-~~~~~------~~~~~-~~~l~ell~------~sDiv~~~~  106 (184)
T d1ygya1          44 GKTVGVVGL-GRIGQLVAQRIAA-FGAYVVA-YDPYVS-PARAA------QLGIE-LLSLDDLLA------RADFISVHL  106 (184)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCEEEE-ECTTSC-HHHHH------HHTCE-ECCHHHHHH------HCSEEEECC
T ss_pred             ceeeeeccc-cchhHHHHHHhhh-ccceEEe-ecCCCC-hhHHh------hcCce-eccHHHHHh------hCCEEEEcC
Confidence            478999998 9999999998764 4788765 665321 11111      11222 468999995      789988554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.48  Score=39.74  Aligned_cols=82  Identities=15%  Similarity=0.244  Sum_probs=54.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE---EEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---VIDf  113 (300)
                      .+.|.|+++++|+++++.+.+ .++.++. .+++.  .++.+++              +++.+.   ..+..+   ..|.
T Consensus        12 v~lITGas~GIG~aiA~~la~-~G~~Vv~-~~r~~--~~l~~~~--------------~~l~~~---~~~~~~~~~~~Dl   70 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALVQ-QGLKVVG-CARTV--GNIEELA--------------AECKSA---GYPGTLIPYRCDL   70 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCSSEEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCCceEEEEEccC
Confidence            388999999999999999885 6888765 44432  1111111              122110   012233   4588


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      |.++.+.+.+..+.+.  +++++|=..|
T Consensus        71 s~~~~v~~~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          71 SNEEDILSMFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            9999999999888876  6888887654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.53  E-value=0.65  Score=38.74  Aligned_cols=80  Identities=15%  Similarity=0.127  Sum_probs=51.6

Q ss_pred             eE-EEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        37 kV-~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      || .|.|+++.||+++++.+.+ .+..|+. ++++.  +.+.+..              +++-+     ...+   +..|
T Consensus         3 KValITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~l~~~~--------------~~l~~-----~g~~~~~~~~D   59 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGK-EGLRVFV-CARGE--EGLRTTL--------------KELRE-----AGVEADGRTCD   59 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEee
Confidence            45 5779999999999999874 6888654 45542  1111111              11111     1222   3568


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .|.++.+.+.+..+.+.  +++++|-..|
T Consensus        60 vs~~~~v~~~~~~~~~~~g~iDilVnnAG   88 (257)
T d2rhca1          60 VRSVPEIEALVAAVVERYGPVDVLVNNAG   88 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCEEEeccc
Confidence            89999999988888774  5888885443

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.79  Score=42.83  Aligned_cols=103  Identities=14%  Similarity=0.084  Sum_probs=59.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCC------------Ccchhh---------hhcCcCCCCcc-eecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------GEDIGM---------VCDMEQPLEIP-VMSD   93 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~------------g~d~~~---------~~g~~~~~gv~-v~~d   93 (300)
                      .||.|+|+ |..|..+++.+. .+|+.=+-++|.+..            -.|+|.         +..+.+...+. +..+
T Consensus        26 s~VlvvG~-gglG~Ei~knLv-l~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~  103 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLV-LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES  103 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHH-TTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred             CCEEEECC-CHHHHHHHHHHH-HhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence            68999998 999999999987 467655556774210            011110         11111111222 2345


Q ss_pred             HHHHHhcc-cccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-CC
Q 022250           94 LTMVLGSI-SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI  140 (300)
Q Consensus        94 l~~~l~~~-~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G~  140 (300)
                      +++.++.. .--..+|+||+...+... ...-..|.++++|+|.+-+ |+
T Consensus       104 ~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~  153 (529)
T d1yova1         104 PENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGL  153 (529)
T ss_dssp             HHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             chhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence            55543210 001257999988755444 5566788899999986643 54

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.26  E-value=1.2  Score=38.63  Aligned_cols=133  Identities=11%  Similarity=0.086  Sum_probs=79.7

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCc-------CCCCcceecCHHHHHhccc
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSIS  102 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~~~~~g~~-------~~~gv~v~~dl~~~l~~~~  102 (300)
                      -.+|+|-|+ |++|+..++.+.+ .+..++++.|+     ++.|-|..++....       ...+.+++  .++++.   
T Consensus        36 gktvaIqGf-GnVG~~~A~~L~e-~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~--~~~~~~---  108 (293)
T d1hwxa1          36 DKTFAVQGF-GNVGLHSMRYLHR-FGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIY--EGSILE---  108 (293)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBC--CSCGGG---
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccC--Cccccc---
Confidence            368999998 9999999999875 68999999884     34455554432110       01111222  235664   


Q ss_pred             ccCCccEEEEcCCchhH-HHHHHHHHHcCCCEEEeCC-C-CCHHHHHHHHHHhhhCCCeEEEcCCCcH---HHHH-HHHH
Q 022250          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GSIL-LQQA  175 (300)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTT-G-~~~e~~~~L~~~a~~~~i~iv~a~N~Si---Gv~l-l~~~  175 (300)
                        .++||+|=+...... .+++.   +-+..+|++-- + .+++..+.    -+++|  +++.|-|-.   ||.+ -.+.
T Consensus       109 --~~~DIliPaA~~~~I~~~~a~---~l~ak~I~EgAN~P~t~eA~~~----L~~~g--I~viPD~laNAGGV~vSy~Ew  177 (293)
T d1hwxa1         109 --VDCDILIPAASEKQLTKSNAP---RVKAKIIAEGANGPTTPQADKI----FLERN--IMVIPDLYLNAGGVTVSYFQI  177 (293)
T ss_dssp             --CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHH----HHHTT--CEEECHHHHTTHHHHHHHHHH
T ss_pred             --CCccEEeeccccccccHHHHH---HHhhCEEeccCCCCCCcchHHH----HHHCC--CEEeChhhhcCchHHhHHHHH
Confidence              689999977654443 33333   45888999865 3 55543222    34444  466676532   3322 1455


Q ss_pred             HHHhccCCCC
Q 022250          176 AISASFHYKN  185 (300)
Q Consensus       176 a~~~~~~~~d  185 (300)
                      .+.+..+.|+
T Consensus       178 ~qn~~~~~w~  187 (293)
T d1hwxa1         178 LKNLNHVSYG  187 (293)
T ss_dssp             HHHHHTSCTT
T ss_pred             Hhhhhhcccc
Confidence            6666665564

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=89.25  E-value=0.63  Score=39.17  Aligned_cols=82  Identities=18%  Similarity=0.148  Sum_probs=53.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      ..+.|.|+++.+|+++++.+.+ .+..++.. +++.  ++..+              .+.+.+.    ....+   +..|
T Consensus         8 K~alITGas~GIG~aia~~la~-~G~~Vv~~-~r~~--~~~~~--------------~~~~~~~----~~g~~~~~~~~D   65 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFAT-EKAKVVVN-YRSK--EDEAN--------------SVLEEIK----KVGGEAIAVKGD   65 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEEE-ESSC--HHHHH--------------HHHHHHH----HTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE-eCCc--HHHHH--------------HHHHHHH----hcCCcEEEEEcc
Confidence            3477889999999999999885 58887754 4332  11110              0111121    12333   3558


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .|.++.+.+.+..+.+.  +++++|=..|
T Consensus        66 vt~~~~v~~~~~~~~~~~G~iDiLVnnAG   94 (261)
T d1geea_          66 VTVESDVINLVQSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEeeccce
Confidence            89999998888888775  7899987654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=89.25  E-value=0.18  Score=40.31  Aligned_cols=97  Identities=7%  Similarity=0.042  Sum_probs=50.7

Q ss_pred             EEEE-cCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcc---eec-----CHHHHHhccc--ccCC
Q 022250           38 VIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---VMS-----DLTMVLGSIS--QSKA  106 (300)
Q Consensus        38 V~V~-Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~---v~~-----dl~~~l~~~~--~~~~  106 (300)
                      |.|+ |++|.+|+..++..+. -++++++++..+..-++..+.+   .++|..   .++     +..+.+.+..  ....
T Consensus        32 vli~~ga~g~vG~~aiqlAk~-~Ga~vI~~v~~~~~~~~~~~~~---~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          32 WFIQNGGTSAVGKYASQIGKL-LNFNSISVIRDRPNLDEVVASL---KELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             EEEESCTTSHHHHHHHHHHHH-HTCEEEEEECCCTTHHHHHHHH---HHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             EEEEeCCCchHHHHHHHHHhh-cCCeEEEEEecccccchHHhhh---hhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            6665 7789999999997664 5899999886432101111111   112211   111     1111111000  0134


Q ss_pred             ccEEEEcCCchhHHHHHHHHHHcCCCEEEeCC
Q 022250          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      +|+++|+...+.....+......|.=+++|.+
T Consensus       108 vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~  139 (189)
T d1gu7a2         108 AKLALNCVGGKSSTGIARKLNNNGLMLTYGGM  139 (189)
T ss_dssp             EEEEEESSCHHHHHHHHHTSCTTCEEEECCCC
T ss_pred             ceEEEECCCcchhhhhhhhhcCCcEEEEECCc
Confidence            78888887766665555555555555556643

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.14  Score=42.10  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=27.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |||++.|. ...|..+.+.+.+ .++++++++..
T Consensus         1 MkI~~~G~-~~~~~~~l~~L~~-~~~~i~~V~t~   32 (203)
T d2bw0a2           1 MKIAVIGQ-SLFGQEVYCHLRK-EGHEVVGVFTV   32 (203)
T ss_dssp             CEEEEECC-HHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred             CEEEEEcC-CHHHHHHHHHHHH-CCCcEEEEEcC
Confidence            79999996 9999999998875 58999999864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.14  E-value=0.56  Score=39.45  Aligned_cols=81  Identities=20%  Similarity=0.169  Sum_probs=51.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      ..+.|.|+++.+|+++++.+.+ .+.+++ ++|++.  ..+.                  ++.+++....... +..|.|
T Consensus         7 KvalITGas~GIG~aia~~la~-~Ga~V~-i~~r~~--~~~~------------------~~~~~l~~~~~~~~~~~Dv~   64 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVR-YGAKVV-IADIAD--DHGQ------------------KVCNNIGSPDVISFVHCDVT   64 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHH------------------HHHHHHCCTTTEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEE-EEECCH--HHHH------------------HHHHHhcCCCceEEEEccCC
Confidence            3477889999999999999875 588865 455532  1111                  1111110011122 456889


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTT  138 (300)
                      .++...+.+..+.+.  .++++|-.-
T Consensus        65 ~~~~v~~~~~~~~~~~g~iD~lVnnA   90 (268)
T d2bgka1          65 KDEDVRNLVDTTIAKHGKLDIMFGNV   90 (268)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCcceecccc
Confidence            999998888877765  789888543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.95  E-value=0.25  Score=38.44  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=25.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~   70 (300)
                      -||+|+|+ |.+|..++-.+....- -||+ .+|.+
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di~   35 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDAN   35 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEecc
Confidence            48999997 9999999987775543 3666 67853

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=88.77  E-value=1.5  Score=36.47  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=52.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      ..+.|.|+++.||+++++.+.+ .+..++. .+++.  +++.+..              +++-+     ....   +..|
T Consensus         9 K~alITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~l~~~~--------------~~~~~-----~g~~~~~~~~D   65 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELAS-LGASVYT-CSRNQ--KELNDCL--------------TQWRS-----KGFKVEASVCD   65 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCEEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCCceEEEee
Confidence            3578999999999999999885 5888654 55432  1111111              12211     1222   3568


Q ss_pred             cCCchhHHHHHHHHHHc---CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF---GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~---G~~vVigTTG  139 (300)
                      .|.++...+.+..+.+.   .+++++-..|
T Consensus        66 v~~~~~v~~~~~~~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          66 LSSRSERQELMNTVANHFHGKLNILVNNAG   95 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCceEEEECCc
Confidence            89999998888877653   3788987654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=88.73  E-value=0.83  Score=38.03  Aligned_cols=82  Identities=17%  Similarity=0.129  Sum_probs=51.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      ..+.|.|+++.||+++++.+.+ .+..++ +++++.  +...+.               .+.+.   ...++. +..|.|
T Consensus         7 K~alVTGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~~~~~---------------~~~~~---~~~~~~~~~~Dv~   64 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVE-EGAKVM-ITGRHS--DVGEKA---------------AKSVG---TPDQIQFFQHDSS   64 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHH---------------HHHHC---CTTTEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH---------------HHHhC---CCCcEEEEEccCC
Confidence            3577889999999999999875 588865 455432  111111               11111   011222 356889


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++.+.+.+..+.+.  +++++|-.-|
T Consensus        65 ~~~~v~~~~~~~~~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          65 DEDGWTKLFDATEKAFGPVSTLVNNAG   91 (251)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCceEEEeccc
Confidence            999998888887774  6888886543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=88.55  E-value=0.87  Score=38.10  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=51.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (300)
                      .++.|.|+++.||+++++.+++ .+..++. ++++.  +++.+..              +++-+.   ...+. ..+|+|
T Consensus         7 K~alITGas~GIG~aia~~la~-~G~~V~i-~~r~~--~~l~~~~--------------~~~~~~---~~~~~~~~~D~s   65 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAG-LGARVYT-CSRNE--KELDECL--------------EIWREK---GLNVEGSVCDLL   65 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCCceEEEeecC
Confidence            4689999999999999998875 5787664 55432  1111111              111110   01222 357899


Q ss_pred             CchhHHHHHHHHHHc--C-CCEEEeCC
Q 022250          115 DASTVYDNVKQATAF--G-MRSVVYVP  138 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G-~~vVigTT  138 (300)
                      .++...+.+..+.+.  | +.+++-..
T Consensus        66 ~~~~~~~~~~~~~~~~~g~idilinna   92 (258)
T d1ae1a_          66 SRTERDKLMQTVAHVFDGKLNILVNNA   92 (258)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCCEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence            999998888877765  3 67887544

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.44  E-value=0.53  Score=36.14  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcce---e--cCHHHHHhcccccCCccEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M--SDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v---~--~dl~~~l~~~~~~~~~DVV  110 (300)
                      -+|.|+|+ |.+|...++.+. ..+.++++ ++.+.  ... +++   .++|...   +  ++..+.+...  ..+.|.+
T Consensus        29 ~~vlv~G~-G~iG~~a~~~a~-~~g~~v~~-~~~~~--~r~-~~~---k~~Ga~~~~~~~~~~~~~~~~~~--~~~~~~~   97 (168)
T d1rjwa2          29 EWVAIYGI-GGLGHVAVQYAK-AMGLNVVA-VDIGD--EKL-ELA---KELGADLVVNPLKEDAAKFMKEK--VGGVHAA   97 (168)
T ss_dssp             CEEEEECC-STTHHHHHHHHH-HTTCEEEE-ECSCH--HHH-HHH---HHTTCSEEECTTTSCHHHHHHHH--HSSEEEE
T ss_pred             CEEEEeec-ccchhhhhHHHh-cCCCeEec-cCCCH--HHh-hhh---hhcCcceecccccchhhhhcccc--cCCCceE
Confidence            46899997 999999888766 46778654 44321  111 111   1223211   1  2444433211  1346667


Q ss_pred             EEcCCchhHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhc
Q 022250          111 IDFTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~-G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~  180 (300)
                      |+++......+....+++. |+=+++|.++-+. ......-.-+  ++.++-+.+.+.  ..+.++.+.+.
T Consensus        98 v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~-~~~~~~~~~~--~~~i~gs~~~~~--~~~~~~l~l~~  163 (168)
T d1rjwa2          98 VVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEM-PIPIFDTVLN--GIKIIGSIVGTR--KDLQEALQFAA  163 (168)
T ss_dssp             EESSCCHHHHHHHHHHEEEEEEEEECCCCSSEE-EEEHHHHHHT--TCEEEECCSCCH--HHHHHHHHHHH
T ss_pred             EeecCCHHHHHHHHHHhccCCceEecccccCCC-CCCHHHHHHC--CcEEEEEeeCCH--HHHHHHHHHHH
Confidence            7777655556666666654 4555555543211 1111222233  377776655553  35666665543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.39  E-value=0.79  Score=38.43  Aligned_cols=82  Identities=16%  Similarity=0.190  Sum_probs=53.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE---EEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---VID  112 (300)
                      .++.|.|+++.+|+++++.+.+ .+.+++. .+++.. +.+.++               .+.+.    ....++   ..|
T Consensus        19 K~~lITGas~GIG~aia~~la~-~Ga~Vvi-~~~~~~-~~~~~~---------------~~~~~----~~g~~~~~~~~D   76 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGR-RGCKVIV-NYANST-ESAEEV---------------VAAIK----KNGSDAACVKAN   76 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESSCH-HHHHHH---------------HHHHH----HTTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EeCCch-HHHHHH---------------HHHHH----hhCCceeeEeCC
Confidence            5788999999999999999885 5888764 443220 111111               11121    122332   357


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .+.++.+.+.+..+.+.  ++++++-..|
T Consensus        77 ~~~~~~v~~~~~~~~~~~g~idilV~nag  105 (272)
T d1g0oa_          77 VGVVEDIVRMFEEAVKIFGKLDIVCSNSG  105 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCccccccc
Confidence            88999998888877764  6888887764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.27  E-value=1.1  Score=37.17  Aligned_cols=79  Identities=14%  Similarity=0.148  Sum_probs=50.1

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc---cEEEEcC
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR---AVVIDFT  114 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~---DVVIDfT  114 (300)
                      +.|.|+++++|+++++.+. ..+..++ +++++.  +.+.+..              +++ .    ....   -+..|.|
T Consensus        13 alITGas~GIG~a~a~~la-~~Ga~V~-~~~r~~--~~l~~~~--------------~~l-~----~~g~~~~~~~~Dvt   69 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLA-KSVSHVI-CISRTQ--KSCDSVV--------------DEI-K----SFGYESSGYAGDVS   69 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHT-TTSSEEE-EEESSH--HHHHHHH--------------HHH-H----TTTCCEEEEECCTT
T ss_pred             EEEeCCCCHHHHHHHHHHH-HcCCEEE-EEECCH--HHHHHHH--------------HHH-H----hcCCcEEEEEccCC
Confidence            5567999999999999887 4678765 455532  1111111              111 1    0122   2456889


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++.+.+.+..+.+.  +++++|-..|
T Consensus        70 ~~~~v~~~~~~~~~~~g~iDilvnnag   96 (251)
T d2c07a1          70 KKEEISEVINKILTEHKNVDILVNNAG   96 (251)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCceeeeeccc
Confidence            999998888877665  5778876543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.98  E-value=0.2  Score=43.22  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=27.8

Q ss_pred             CcceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      |.-||.|.|++|-+|+.+++.+.+ .+.+++++.
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~-~g~~V~~ld   33 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLE-AGYLPVVID   33 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHH-CcCEEEEEE
Confidence            446899999999999999999985 478888753

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=87.95  E-value=0.63  Score=38.66  Aligned_cols=80  Identities=20%  Similarity=0.362  Sum_probs=52.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (300)
                      .+.|.|+++.||+++++.+.+ .+..++. .+++.  +.+.++               .+.+.    ....-+..|.|.+
T Consensus         6 ~alITGas~GIG~a~a~~l~~-~G~~Vv~-~~r~~--~~l~~~---------------~~~~~----~~~~~~~~Dv~~~   62 (243)
T d1q7ba_           6 IALVTGASRGIGRAIAETLAA-RGAKVIG-TATSE--NGAQAI---------------SDYLG----ANGKGLMLNVTDP   62 (243)
T ss_dssp             EEEESSCSSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHH---------------HHHHG----GGEEEEECCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EeCCH--HHHHHH---------------HHHhC----CCCcEEEEEecCH
Confidence            466779999999999999885 5888764 55432  111111               11111    0112356789999


Q ss_pred             hhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          117 STVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       117 ~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      +...+.+..+.+.  +++++|-.-|
T Consensus        63 ~~v~~~~~~~~~~~g~iDilVnnAg   87 (243)
T d1q7ba_          63 ASIESVLEKIRAEFGEVDILVNNAG   87 (243)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             HHhhhhhhhhhcccCCcceehhhhh
Confidence            9998888888775  5888886644

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.82  E-value=1.1  Score=37.45  Aligned_cols=79  Identities=19%  Similarity=0.252  Sum_probs=51.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (300)
                      .+.|.|+++.+|+++++.+.+ .+..++ ++|++.  +.+.+.               .+.+.    ....+   +..|.
T Consensus         7 ~alITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~---------------~~~~~----~~g~~~~~~~~Dv   63 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAE-EGTAIA-LLDMNR--EALEKA---------------EASVR----EKGVEARSYVCDV   63 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHH---------------HHHHH----TTTSCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH---------------HHHHH----hcCCcEEEEEccC
Confidence            577889999999999999875 678865 456542  111111               11111    11222   45688


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVP  138 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTT  138 (300)
                      |.++.+.+.+..+.+.  +++++|-..
T Consensus        64 ~~~~~v~~~~~~~~~~~g~iDilVnna   90 (260)
T d1zema1          64 TSEEAVIGTVDSVVRDFGKIDFLFNNA   90 (260)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCeehhhh
Confidence            9999998888887765  688888543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=87.64  E-value=0.26  Score=41.47  Aligned_cols=110  Identities=8%  Similarity=0.138  Sum_probs=66.8

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcC
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (300)
                      -.+|+|.|+ |++|+.+++.+.+ .+..++. +|.+.  .....+.   ...+.. ..+.++++.     .++||++=+.
T Consensus        39 g~~v~IqG~-GnVG~~~a~~L~~-~Gakvv~-~d~~~--~~~~~~~---~~~g~~-~~~~~~~~~-----~~cDIl~PcA  104 (230)
T d1leha1          39 GLAVSVQGL-GNVAKALCKKLNT-EGAKLVV-TDVNK--AAVSAAV---AEEGAD-AVAPNAIYG-----VTCDIFAPCA  104 (230)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHH---HHHCCE-ECCGGGTTT-----CCCSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEe-ecccH--HHHHHHH---HhcCCc-ccCCccccc-----ccccEecccc
Confidence            378999998 9999999998875 6888885 34321  1111111   112222 235567775     6899999887


Q ss_pred             CchhH-HHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHhhhCCCeEEEcCCCc
Q 022250          115 DASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS  166 (300)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vVigTT--G~~~e~~~~L~~~a~~~~i~iv~a~N~S  166 (300)
                      ..... .+++.   +-...+|+|-.  +++..+..   +.-+++  .++|.|-|-
T Consensus       105 ~~~~I~~~~~~---~l~ak~Ive~ANn~~t~~ea~---~~L~~r--GI~~iPD~l  151 (230)
T d1leha1         105 LGAVLNDFTIP---QLKAKVIAGSADNQLKDPRHG---KYLHEL--GIVYAPDYV  151 (230)
T ss_dssp             CSCCBSTTHHH---HCCCSEECCSCSCCBSSHHHH---HHHHHH--TCEECCHHH
T ss_pred             cccccChHHhh---ccCccEEEecccCCCCCchHH---HHHHhh--CcEEEeehh
Confidence            65554 33333   55788999876  45532322   222343  457878764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.59  E-value=0.78  Score=38.30  Aligned_cols=80  Identities=25%  Similarity=0.291  Sum_probs=53.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      ..+.|.|+++.+|+++++.+.+ .+.+++. .+++.  +.+                  +++.+++  ..++ -+..|.|
T Consensus         6 K~alVTGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~l------------------~~~~~~~--~~~~~~~~~Dvt   61 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVR-EGARVAI-ADINL--EAA------------------RATAAEI--GPAACAIALDVT   61 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHH-TTEEEEE-EESCH--HHH------------------HHHHHHH--CTTEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHHh--CCceEEEEeeCC
Confidence            4578899999999999999885 5888664 55432  111                  1121110  0122 2466899


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++.+.+.+..+.+.  +++++|-..|
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          62 DQASIDRCVAELLDRWGSIDILVNNAA   88 (256)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCccEEEeecc
Confidence            999999988888775  7899887654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.45  E-value=1.3  Score=36.94  Aligned_cols=85  Identities=20%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcCC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFTD  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT~  115 (300)
                      .+.|.|+++.+|+++++.+.+ .+++++ +.+++.  ..+.+..              +++.+.-....++ =+..|.|.
T Consensus         7 valVTGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~~--------------~~l~~~~~~~~~~~~~~~Dvt~   68 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAR-EGAKVT-ITGRHA--ERLEETR--------------QQILAAGVSEQNVNSVVADVTT   68 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH--------------HHHHHTTCCGGGEEEEECCTTS
T ss_pred             EEEEeCcCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH--------------HHHHhcCCCcCceEEEEccCCC
Confidence            356779999999999999875 688865 455542  1111111              1111100000011 13568999


Q ss_pred             chhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      ++...+.+..+.+.  +++++|-..|
T Consensus        69 ~~~v~~~~~~~~~~~g~iDilvnnAG   94 (264)
T d1spxa_          69 DAGQDEILSTTLGKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEeecccc
Confidence            99999988888775  6899987655

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.34  E-value=0.95  Score=35.91  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=27.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. ++++
T Consensus        24 K~vlItGasgGIG~~ia~~la~-~G~~V~~-~~r~   56 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAG-EGAEVVL-CGRK   56 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-hccchhh-cccc
Confidence            6899999999999999999885 5788665 5543

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.32  E-value=0.23  Score=43.55  Aligned_cols=91  Identities=10%  Similarity=-0.032  Sum_probs=56.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      -.++|+|+ |.+++.+++++.....++=+-+++++.  +.+..++...+..++.+..+.++++      .++|+||-+|+
T Consensus       126 ~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~--e~~~~~~~~~~~~~~~~~~~~~~a~------~~aDiV~taT~  196 (320)
T d1omoa_         126 SVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVRE--KAAKKFVSYCEDRGISASVQPAEEA------SRCDVLVTTTP  196 (320)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHHHTTCCEEECCHHHH------TSSSEEEECCC
T ss_pred             cEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCH--HHHHHHHHHHHhcCCccccchhhhh------ccccEEEEecc
Confidence            57999997 999999999998766677777787643  2222222111233455555666666      37899986663


Q ss_pred             -chhHHHHHHHHHHcCCCEE-EeC
Q 022250          116 -ASTVYDNVKQATAFGMRSV-VYV  137 (300)
Q Consensus       116 -p~~~~~~~~~al~~G~~vV-igT  137 (300)
                       .+.+.+  ...++.|.+|. ||.
T Consensus       197 s~~P~~~--~~~l~~G~hv~~iGs  218 (320)
T d1omoa_         197 SRKPVVK--AEWVEEGTHINAIGA  218 (320)
T ss_dssp             CSSCCBC--GGGCCTTCEEEECSC
T ss_pred             Ccccccc--hhhcCCCCeEeecCC
Confidence             222221  23467787776 443

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=86.76  E-value=1.5  Score=35.91  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=24.2

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEec
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (300)
                      |.|.|++|-+|+.+++.+.+..-.++++ +|.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~-~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILV-VDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEE-EEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEE-EEC
Confidence            7899999999999999998663245554 563

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.72  E-value=0.67  Score=37.28  Aligned_cols=32  Identities=28%  Similarity=0.279  Sum_probs=23.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .|+|+|| |.+|...+..+... +..-+.++|+.
T Consensus        28 tVlV~Ga-G~vGl~a~~~ak~~-ga~~Vi~~d~~   59 (195)
T d1kola2          28 TVYVAGA-GPVGLAAAASARLL-GAAVVIVGDLN   59 (195)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHT-TCSEEEEEESC
T ss_pred             EEEEECc-CHHHHHHHHHHHhh-cccceeeeccc
Confidence            6999998 99999988877654 44444456653

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.57  E-value=0.061  Score=43.39  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=57.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCH--HHHHhcccccCCccEEEEcC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVIDFT  114 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl--~~~l~~~~~~~~~DVVIDfT  114 (300)
                      .|.|.|++|.+|...++.++ .-+.++++...++.. .+.-.-.|..   .+..|++.  .+.+.    ....|.+||+.
T Consensus        34 ~vlV~gasGGVG~~aiQlAk-~~Ga~Via~~~~~~k-~~~~~~lGad---~vi~~~~~~~~~~l~----~~~~~~vvD~V  104 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLH-KLGYQVVAVSGREST-HEYLKSLGAS---RVLPRDEFAESRPLE----KQVWAGAIDTV  104 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHH-HTTCCEEEEESCGGG-HHHHHHHTEE---EEEEGGGSSSCCSSC----CCCEEEEEESS
T ss_pred             cEEEEEccccchHHHHHHHH-HcCCCeEEEecchhH-HHHHHhhccc---cccccccHHHHHHHH----hhcCCeeEEEc
Confidence            58999999999999999766 469999987754321 1111111110   11112211  11222    24579999998


Q ss_pred             CchhHHHHHHHHHHcCCCEEEeCC
Q 022250          115 DASTVYDNVKQATAFGMRSVVYVP  138 (300)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTT  138 (300)
                      --+...+.+......|.=+.+|..
T Consensus       105 gg~~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2         105 GDKVLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             CHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             chHHHHHHHHHhccccceEeeccc
Confidence            776666666666667777778765

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=86.46  E-value=3.5  Score=30.87  Aligned_cols=62  Identities=10%  Similarity=0.079  Sum_probs=43.0

Q ss_pred             CCccEEEEcCCchhHHHHHHHHHHcCCCEEEeC-CCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHH
Q 022250          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (300)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT-TG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~  170 (300)
                      .++|+|+-+.......+.+..+.+.++.+|.-. +|++--+    .++|+++||++.-+|.+|.--.
T Consensus        44 ~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d~ID----~~aa~~~gI~V~N~P~~svae~  106 (134)
T d1j4aa2          44 KGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNID----MAKAKELGFQITNVPVYSYTTH  106 (134)
T ss_dssp             TTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBC----HHHHHHTTCEEECCCCSCCBHH
T ss_pred             cCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcCccC----HHHHHhCCeEEEECCCCcHHHH
Confidence            478988865555455667777777788777543 4876322    4556778999999999886433

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.44  E-value=0.3  Score=42.88  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=26.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (300)
                      +||.|.|++|-+|+.+++.+++ .+.+++++
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~-~g~~V~~i   31 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSK-KNYEVCIV   31 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CcCEEEEE
Confidence            7899999999999999999885 67998764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.39  E-value=0.99  Score=37.63  Aligned_cols=80  Identities=20%  Similarity=0.188  Sum_probs=52.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      ..+.|.|+++.||+++++.+.+ .+..++. .|++.  +.+                  +++.+++  ....=+..|.|.
T Consensus         7 K~alITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~------------------~~~~~~~--~~~~~~~~Dvs~   62 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVN-SGARVVI-CDKDE--SGG------------------RALEQEL--PGAVFILCDVTQ   62 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHH------------------HHHHHHC--TTEEEEECCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHhc--CCCeEEEccCCC
Confidence            3588999999999999999885 5888664 55432  111                  1111110  011224668899


Q ss_pred             chhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      ++...+.+..+.+.  +++++|-..|
T Consensus        63 ~~~v~~~~~~~~~~~g~iDilVnnAG   88 (250)
T d1ydea1          63 EDDVKTLVSETIRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            99998888887764  6888886654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.23  E-value=1  Score=37.79  Aligned_cols=86  Identities=23%  Similarity=0.244  Sum_probs=52.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      ..+.|.|+++.||+++++.+.+ .+..++. .+++.  +.+.+..              +++.+.-....++ =+..|.|
T Consensus         6 K~alVTGas~GIG~aia~~la~-~Ga~V~l-~~r~~--~~l~~~~--------------~~l~~~~~~~~~~~~~~~Dvs   67 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQ-EGANVTI-TGRSS--ERLEETR--------------QIILKSGVSEKQVNSVVADVT   67 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHTTTCCGGGEEEEECCTT
T ss_pred             CEEEEeCcCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhcCCCCCceEEEEccCC
Confidence            3578889999999999999885 5787654 55432  1111110              1111100000011 1456889


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++++-..|
T Consensus        68 ~~~~v~~~~~~~~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          68 TEDGQDQIINSTLKQFGKIDVLVNNAG   94 (272)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCceEEEeCCc
Confidence            999998888888775  6899886544

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.22  E-value=1.3  Score=36.53  Aligned_cols=81  Identities=14%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      -.|.|.|+++++|+++++.+.+... +.|+.. .++.  ..+.++.               +..     ..++. +.+|.
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~-~R~~--~~~~~l~---------------~~~-----~~~~~~~~~Dv   60 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIAT-ARDV--EKATELK---------------SIK-----DSRVHVLPLTV   60 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEE-ESSG--GGCHHHH---------------TCC-----CTTEEEEECCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEE-eCCH--HHHHHHH---------------Hhh-----CCceEEEEEec
Confidence            5688889999999999999886532 355543 3332  1111111               111     01223 45588


Q ss_pred             CCchhHHHHHHHHHH----cCCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATA----FGMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~----~G~~vVigTTG  139 (300)
                      |.++...+.+..+.+    .++++++-.-|
T Consensus        61 s~~~~v~~~~~~i~~~~~~~~idilinnAG   90 (250)
T d1yo6a1          61 TCDKSLDTFVSKVGEIVGSDGLSLLINNAG   90 (250)
T ss_dssp             TCHHHHHHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCeEEEEEcCc
Confidence            888888777776655    25889986554

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=86.18  E-value=0.49  Score=41.90  Aligned_cols=90  Identities=16%  Similarity=0.142  Sum_probs=59.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCcCCCCcc--eecCHHHHHhcccccCCccEEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIP--VMSDLTMVLGSISQSKARAVVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~-g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVID  112 (300)
                      -.++|+|+ |..++.+++++....+++=+-+++++.  .....++ .+....|++  +.+|+++++.      .+|+|+-
T Consensus       129 ~~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~--~~~~~~~~~l~~~~g~~v~~~~s~~eav~------~ADIi~t  199 (340)
T d1x7da_         129 RKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDP--LATAKLIANLKEYSGLTIRRASSVAEAVK------GVDIITT  199 (340)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHTTCTTCEEEECSSHHHHHT------TCSEEEE
T ss_pred             ceEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecCh--HHHHHHHHhhhhccCCCceecCCHHHHHh------cCCceee
Confidence            57999997 999999999998777788788888653  1111221 111223544  4689999984      7999987


Q ss_pred             cCCch---hHHHHHHHHHHcCCCEE-Ee
Q 022250          113 FTDAS---TVYDNVKQATAFGMRSV-VY  136 (300)
Q Consensus       113 fT~p~---~~~~~~~~al~~G~~vV-ig  136 (300)
                      +|...   .+.+  ...++.|.++. ||
T Consensus       200 ~Tas~s~~Pv~~--~~~l~pG~hI~aiG  225 (340)
T d1x7da_         200 VTADKAYATIIT--PDMLEPGMHLNAVG  225 (340)
T ss_dssp             CCCCSSEEEEEC--GGGCCTTCEEEECS
T ss_pred             ccccCCCCcccc--hhhcCCCCEEeecc
Confidence            77422   1222  23567788775 45

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.96  E-value=2.9  Score=35.65  Aligned_cols=88  Identities=25%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (300)
                      .+.|.|++++||+++++.+.+ .++.++ +.|...   +.....        .....++++.+++. .....+..|.+.+
T Consensus         9 valITGas~GIG~aiA~~la~-~Ga~Vv-i~d~~~---~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~d~~~~   74 (302)
T d1gz6a_           9 VVLVTGAGGGLGRAYALAFAE-RGALVV-VNDLGG---DFKGVG--------KGSSAADKVVEEIR-RRGGKAVANYDSV   74 (302)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH-TTCEEE-EECCCB---CTTSCB--------CCSHHHHHHHHHHH-HTTCEEEEECCCG
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-cCCEEE-EEeCCc---hhhhhh--------hhHHHHHHHHHHHh-hcccccccccchH
Confidence            477889999999999999885 678765 444321   000000        00011222221110 1345678889998


Q ss_pred             hhHHHHHHHHHHc--CCCEEEeCC
Q 022250          117 STVYDNVKQATAF--GMRSVVYVP  138 (300)
Q Consensus       117 ~~~~~~~~~al~~--G~~vVigTT  138 (300)
                      +...+.+..+.+.  +++++|-.-
T Consensus        75 ~~~~~~v~~~~~~~G~iDiLVnNA   98 (302)
T d1gz6a_          75 EAGEKLVKTALDTFGRIDVVVNNA   98 (302)
T ss_dssp             GGHHHHHHHHHHHTSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECC
Confidence            8888888877765  588887543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.93  E-value=1.1  Score=37.76  Aligned_cols=86  Identities=26%  Similarity=0.291  Sum_probs=53.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      ..+.|.|+++.+|+++++.+.+ .+..++ +.+++.  ..+.+..              +++.+.-....++ -+..|.|
T Consensus         5 K~alITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~~--------------~~i~~~~~~~~~~~~~~~Dv~   66 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAK-EGAQVT-ITGRNE--DRLEETK--------------QQILKAGVPAEKINAVVADVT   66 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH--------------HHHHHTTCCGGGEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH--------------HHHHHcCCCCcceEEEEeeCC
Confidence            3578999999999999999885 588866 455432  1111110              1111100000011 2456899


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++++-..|
T Consensus        67 ~~~~v~~~~~~~~~~~G~iDilVnnAG   93 (274)
T d1xhla_          67 EASGQDDIINTTLAKFGKIDILVNNAG   93 (274)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCceEEEeecc
Confidence            999998888888765  6888886543

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=2.5  Score=35.63  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             eEEE-EcCCchHHHHHHHHHHhcCCcEE--EEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhccc-ccCCcc-EEE
Q 022250           37 KVII-NGAVKEIGRAAVIAVTKARGMEV--AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS-QSKARA-VVI  111 (300)
Q Consensus        37 kV~V-~Ga~GrMG~~i~~~i~~~~~~eL--vg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~-~~~~~D-VVI  111 (300)
                      ||+| .|+++++|+++++.+.+ .+..+  +....++.  +....               +++..+++. ...++. +..
T Consensus         3 kVvlITGassGIG~a~A~~la~-~Ga~v~~v~~~~~~~--~~~~~---------------l~~~~~~~~~~~~~~~~~~~   64 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLAS-DPSQSFKVYATLRDL--KTQGR---------------LWEAARALACPPGSLETLQL   64 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHT-CTTCCEEEEEEESCG--GGTHH---------------HHHHHHHTTCCTTSEEEEEC
T ss_pred             CEEEEccCCCHHHHHHHHHHHH-CCCCeEEEEEecCCh--hhhHH---------------HHHHHHHHhccCCceEEEec
Confidence            6665 59999999999999885 45543  33333321  11111               112111100 001222 456


Q ss_pred             EcCCchhHHHHHHHHHHcCCCEEEeCCC
Q 022250          112 DFTDASTVYDNVKQATAFGMRSVVYVPH  139 (300)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTTG  139 (300)
                      |.|.++...+.+..+.+.++++++-..|
T Consensus        65 Dv~~~~~~~~~~~~~~~g~idilvnnag   92 (285)
T d1jtva_          65 DVRDSKSVAAARERVTEGRVDVLVCNAG   92 (285)
T ss_dssp             CTTCHHHHHHHHHTCTTSCCSEEEECCC
T ss_pred             cccchHhhhhhhhhccccchhhhhhccc
Confidence            8899999888888777777888876553

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.87  E-value=1.1  Score=37.15  Aligned_cols=80  Identities=21%  Similarity=0.265  Sum_probs=51.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCCc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (300)
                      .+.|.|+++.+|+++++.+.+ .+.+++. .+++.  +.+.                  ++.+++. ....-+..|.|.+
T Consensus         8 ~alITGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~------------------~~~~~~~-~~~~~~~~Dv~~~   64 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMVA-EGAKVVF-GDILD--EEGK------------------AMAAELA-DAARYVHLDVTQP   64 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHH------------------HHHHHTG-GGEEEEECCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHH------------------HHHHHhh-CcceEEEeecCCH
Confidence            467789999999999999885 6888664 55432  1111                  1111100 0111245688999


Q ss_pred             hhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          117 STVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       117 ~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      +...+.++.+.+.  +++++|-..|
T Consensus        65 ~~v~~~~~~~~~~~g~idilinnAG   89 (244)
T d1nffa_          65 AQWKAAVDTAVTAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCc
Confidence            9998888877764  6888876554

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.66  E-value=1.6  Score=36.05  Aligned_cols=80  Identities=20%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEEcC
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVIDfT  114 (300)
                      |.|.|+++++|+++++.+.+ .+..++-...++.  +.+.++               .+.+++    ...+   +..|.|
T Consensus         4 ~lITGas~GIG~a~a~~la~-~Ga~V~i~~~~~~--~~~~~~---------------~~~~~~----~g~~~~~~~~Dv~   61 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGK-AGCKVLVNYARSA--KAAEEV---------------SKQIEA----YGGQAITFGGDVS   61 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----HTCEEEEEECCTT
T ss_pred             EEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH---------------HHHHHH----cCCcEEEEeCCCC
Confidence            56779999999999999885 6888764333221  111111               111110    1122   456888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  +++++|-..|
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDiLVnnAg   88 (244)
T d1edoa_          62 KEADVEAMMKTAIDAWGTIDVVVNNAG   88 (244)
T ss_dssp             SHHHHHHHHHHHHHHSSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCccccccc
Confidence            999988888877765  5788875543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.60  E-value=2.2  Score=35.48  Aligned_cols=84  Identities=13%  Similarity=0.111  Sum_probs=53.7

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      ..+.|.|+++.+|+++++.+.+ .+..++. ++++.  ..+.+..              +++-+.   ..++ -+.+|.|
T Consensus         9 K~alVTGas~GIG~aiA~~la~-~Ga~V~~-~~r~~--~~l~~~~--------------~~~~~~---~~~~~~~~~Dv~   67 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAG-FGAVIHT-CARNE--YELNECL--------------SKWQKK---GFQVTGSVCDAS   67 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCceEEEeccCC
Confidence            5688999999999999999885 5888665 55432  1111111              111110   0112 2456889


Q ss_pred             CchhHHHHHHHHHHc--C-CCEEEeCCCC
Q 022250          115 DASTVYDNVKQATAF--G-MRSVVYVPHI  140 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G-~~vVigTTG~  140 (300)
                      .++...+.+..+.+.  | +++++-..|.
T Consensus        68 ~~~~v~~~~~~~~~~~~g~idilvnnAG~   96 (259)
T d1xq1a_          68 LRPEREKLMQTVSSMFGGKLDILINNLGA   96 (259)
T ss_dssp             SHHHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCcccccccccc
Confidence            999998888877664  4 7888876553

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.57  E-value=1.1  Score=37.74  Aligned_cols=84  Identities=12%  Similarity=0.135  Sum_probs=51.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      ..+.|.|++|.+|+++++.+.+ .+.+++. ++++.  .+..+.              .+++.++.  .... -+..|.+
T Consensus        26 K~alITGas~GIG~aiA~~la~-~Ga~Vii-~~r~~--~~l~~~--------------~~~l~~~~--g~~~~~~~~D~~   85 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSS-LGAQCVI-ASRKM--DVLKAT--------------AEQISSQT--GNKVHAIQCDVR   85 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH--------------HHHHHHHH--SSCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EECCH--HHHHHH--------------HHHHHHhc--CCceEEEEeccc
Confidence            3488899999999999999885 6888775 45432  111111              11222100  0111 2346888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++.+.+....+.+.  ++++++-..|
T Consensus        86 ~~~~v~~~~~~~~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          86 DPDMVQNTVSELIKVAGHPNIVINNAA  112 (294)
T ss_dssp             CHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             ChHHHHHHhhhhhhhccccchhhhhhh
Confidence            899888777766654  5888887654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.34  E-value=1.8  Score=31.76  Aligned_cols=109  Identities=14%  Similarity=0.128  Sum_probs=56.4

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCccee----cCHHHHHhcccccCCccEEEEc
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVIDf  113 (300)
                      |.|+|+ |++|+.+++.+...   +++ +++.++  .....+    ...|+.++    ++. +.|.+ ..-.+++.+|-.
T Consensus         3 ivI~G~-g~~g~~l~~~L~~~---~i~-vi~~d~--~~~~~~----~~~~~~~i~Gd~~~~-~~L~~-a~i~~A~~vi~~   69 (129)
T d2fy8a1           3 VVICGW-SESTLECLRELRGS---EVF-VLAEDE--NVRKKV----LRSGANFVHGDPTRV-SDLEK-ANVRGARAVIVN   69 (129)
T ss_dssp             EEEESC-CHHHHHHHHTSCGG---GEE-EEESCT--THHHHH----HHTTCEEEESCTTSH-HHHHH-TTCTTCSEEEEC
T ss_pred             EEEECC-CHHHHHHHHHHcCC---CCE-EEEcch--HHHHHH----HhcCccccccccCCH-HHHHH-hhhhcCcEEEEe
Confidence            789998 99999999987543   343 456543  111111    12344432    233 33322 112467888866


Q ss_pred             CCchhH-HHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCC
Q 022250          114 TDASTV-YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (300)
Q Consensus       114 T~p~~~-~~~~~~al~~--G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~  165 (300)
                      |.-+.. ...+..+.+.  ..++|+-+  .+++..+.+.++    |+-.+++|+-
T Consensus        70 ~~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~----G~d~vi~p~~  118 (129)
T d2fy8a1          70 LESDSETIHCILGIRKIDESVRIIAEA--ERYENIEQLRMA----GADQVISPFV  118 (129)
T ss_dssp             CSSHHHHHHHHHHHHHHCSSSCEEEEC--SSGGGHHHHHHH----HCSEEECHHH
T ss_pred             ccchhhhHHHHHHHHHHCCCceEEEEE--cCHHHHHHHHHC----CCCEEEChHH
Confidence            654433 3333444443  34566544  344454555444    3555777764

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.21  E-value=1.1  Score=35.09  Aligned_cols=73  Identities=18%  Similarity=0.126  Sum_probs=41.9

Q ss_pred             cceEEEEcCCc--hHHHHHHHHHHhcCCc---EEEEEEecCCC---Ccchhh-----hhcCcCCCCcceecCHHHHHhcc
Q 022250           35 NIKVIINGAVK--EIGRAAVIAVTKARGM---EVAGAIDSHSV---GEDIGM-----VCDMEQPLEIPVMSDLTMVLGSI  101 (300)
Q Consensus        35 ~ikV~V~Ga~G--rMG~~i~~~i~~~~~~---eLvg~vd~~~~---g~d~~~-----~~g~~~~~gv~v~~dl~~~l~~~  101 (300)
                      +|||+|+|+ |  ..+..++..+...+.+   || ..+|.++.   ++-...     +.+...+..+..++|..+.+   
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI-~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al---   75 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGEL-WLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRAL---   75 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEE-EEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH---
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEE-EEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhc---
Confidence            589999998 7  4557777777766653   44 46775321   111110     11111223344567888887   


Q ss_pred             cccCCccEEEEcCC
Q 022250          102 SQSKARAVVIDFTD  115 (300)
Q Consensus       102 ~~~~~~DVVIDfT~  115 (300)
                         .++|+||....
T Consensus        76 ---~gaDvVv~ta~   86 (169)
T d1s6ya1          76 ---DGADFVTTQFR   86 (169)
T ss_dssp             ---TTCSEEEECCC
T ss_pred             ---CCCCEEEEccc
Confidence               37899886543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=85.16  E-value=1.6  Score=36.11  Aligned_cols=77  Identities=23%  Similarity=0.277  Sum_probs=51.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      ..+.|.|+++.||+++++.+.+ .++.++ +.+++.   +..+.               .+.+.      ..-+-+|.|.
T Consensus         6 K~alITGas~GIG~aia~~la~-~G~~V~-~~~~~~---~~~~~---------------~~~~~------~~~~~~Dv~~   59 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAR-EGALVA-LCDLRP---EGKEV---------------AEAIG------GAFFQVDLED   59 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESST---THHHH---------------HHHHT------CEEEECCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH---HHHHH---------------HHHcC------CeEEEEeCCC
Confidence            3578999999999999999885 678765 455542   11111               11111      1124568899


Q ss_pred             chhHHHHHHHHHHc--CCCEEEeCC
Q 022250          116 ASTVYDNVKQATAF--GMRSVVYVP  138 (300)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTT  138 (300)
                      ++...+.+..+.+.  +++++|-..
T Consensus        60 ~~~v~~~~~~~~~~~G~iDiLVnnA   84 (248)
T d2d1ya1          60 ERERVRFVEEAAYALGRVDVLVNNA   84 (248)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeC
Confidence            99988888877775  688888543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=85.10  E-value=0.83  Score=41.15  Aligned_cols=87  Identities=17%  Similarity=0.190  Sum_probs=58.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCH--HHHHhcccccCCccEEEEc
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVIDF  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl--~~~l~~~~~~~~~DVVIDf  113 (300)
                      .+|.+.|+ |.-|+..++.+. ..+.++++++|.....  .++     .-.|+||.+.-  .+...    ...-.+.|++
T Consensus        39 ~~~~l~g~-~~~~~~~~~~~~-~~~~~v~~~~d~~~~~--~~~-----~~~g~pv~s~~~~~~~~~----~~~~~~~v~~  105 (395)
T d2py6a1          39 TRLVILGT-KGFGAHLMNVRH-ERPCEVIAAVDDFRYH--SGE-----LYYGLPIISTDRFTELAT----HDRDLVALNT  105 (395)
T ss_dssp             CEEEEECS-SSTHHHHHSCSS-SCSSEEEEEECTTTTT--SCC-----EETTEEEECHHHHHHHHH----TCTTEEEEEC
T ss_pred             ceEEEEcC-chhHHHHHHHHH-HCCceEEEEecCchhh--cCc-----eecceEeecHHHhhhhhh----ccCcEEEEEe
Confidence            57999998 999999998765 5689999999965411  111     13588887532  22222    1233477888


Q ss_pred             CCchhHHHHH-HHHHHcCCCEEE
Q 022250          114 TDASTVYDNV-KQATAFGMRSVV  135 (300)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vVi  135 (300)
                      +.+....... ..+.++|+|.+-
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~  128 (395)
T d2py6a1         106 CRYDGPKRFFDQICRTHGIPHLN  128 (395)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccchhhHHHHHHHhcCCcccc
Confidence            8777765555 566788988764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.98  E-value=0.48  Score=39.96  Aligned_cols=31  Identities=16%  Similarity=0.331  Sum_probs=27.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      ||.|.|++|-+|+.+++.+.+ .++++.++..
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~-~g~~V~~~~r   32 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLE-KGYRVHGLVA   32 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHH-CcCEEEEEEC
Confidence            799999999999999999876 4899987653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.94  E-value=2.4  Score=34.81  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcE------EEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGME------VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---  108 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~e------Lvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---  108 (300)
                      |.|.|+++++|+++++.+.+. +..      .+..++++.  .++.++.              +++-+     ....   
T Consensus         4 vlITGas~GIG~aia~~la~~-G~~~~~~~~~v~~~~r~~--~~l~~~~--------------~~~~~-----~g~~~~~   61 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTA--ADLEKIS--------------LECRA-----EGALTDT   61 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCH--HHHHHHH--------------HHHHT-----TTCEEEE
T ss_pred             EEEccCCCHHHHHHHHHHHHh-CccccccCcEEEEEeCCH--HHHHHHH--------------HHHHh-----cCCcEEE
Confidence            457899999999999998753 433      244455432  1111111              11211     1222   


Q ss_pred             EEEEcCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          109 VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      +..|.|.++...+.+..+.+.  ++++++=.-|
T Consensus        62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg   94 (240)
T d2bd0a1          62 ITADISDMADVRRLTTHIVERYGHIDCLVNNAG   94 (240)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             EEecCCCHHHHHHHHHHHHHHcCCcceeecccc
Confidence            355889999998888888775  5888886654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=84.93  E-value=2.5  Score=34.77  Aligned_cols=80  Identities=19%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcCC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFTD  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT~  115 (300)
                      .+.|.|+++.||+++++.+.+ .+..++. .|++.. +..                  ++.+++.  ..++ =+..|.|.
T Consensus         7 valVTGas~GIG~aia~~la~-~Ga~V~~-~~~~~~-~~~------------------~~~~~~~--g~~~~~~~~Dvs~   63 (247)
T d2ew8a1           7 LAVITGGANGIGRAIAERFAV-EGADIAI-ADLVPA-PEA------------------EAAIRNL--GRRVLTVKCDVSQ   63 (247)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESSCC-HHH------------------HHHHHHT--TCCEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCch-HHH------------------HHHHHHc--CCcEEEEEeeCCC
Confidence            467889999999999999874 6887664 454321 111                  1112110  0111 24568899


Q ss_pred             chhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      ++.+.+.+..+.+.  +++++|=.-|
T Consensus        64 ~~~v~~~~~~~~~~~G~iDilVnnAG   89 (247)
T d2ew8a1          64 PGDVEAFGKQVISTFGRCDILVNNAG   89 (247)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            99998888888775  6899886654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.73  E-value=0.31  Score=38.77  Aligned_cols=33  Identities=12%  Similarity=0.110  Sum_probs=26.4

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .+|.|+|+ |.+|++++..+... +..-+-+++++
T Consensus        19 k~vlIlGa-GGaarai~~al~~~-g~~~i~i~nR~   51 (182)
T d1vi2a1          19 KTMVLLGA-GGASTAIGAQGAIE-GLKEIKLFNRR   51 (182)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CEEEEECC-cHHHHHHHHHHhhc-CCceEeeeccc
Confidence            68999998 99999999888764 66666667764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.69  E-value=2.5  Score=35.94  Aligned_cols=86  Identities=16%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      ..+.|.|+++.+|+++++.+.+ .++.++. .+++.  +...+.              .+++.+.........   +..|
T Consensus        13 KvalITGas~GIG~aia~~la~-~Ga~Vvi-~~r~~--~~l~~~--------------~~el~~~~~~~~~~~~~~~~~D   74 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLE-LGSNVVI-ASRKL--ERLKSA--------------ADELQANLPPTKQARVIPIQCN   74 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH--------------HHHHHHTSCTTCCCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH--------------HHHHHhhhccccCceEEEEecc
Confidence            4588999999999999999885 5888664 55432  111111              011111000001122   3468


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .|.++...+.+..+.+.  +++++|-..|
T Consensus        75 vs~~~~v~~~~~~~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          75 IRNEEEVNNLVKSTLDTFGKINFLVNNGG  103 (297)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCeEEEEeecc
Confidence            89999999988888764  6888886543

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=84.66  E-value=2.2  Score=35.70  Aligned_cols=71  Identities=13%  Similarity=0.044  Sum_probs=43.0

Q ss_pred             CCCcceecCHHHHHhcccccCCccEEEEcCC-chhHHHHHHHHHHcCC--CEEEeCCCCCHHHHHHHHHHhhhCCCeEEE
Q 022250           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (300)
Q Consensus        85 ~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~--~vVigTTG~~~e~~~~L~~~a~~~~i~iv~  161 (300)
                      +.|+.+.+|..++++      ++|+||-+.+ ++...+.++..+++-.  .+|+-++..+.....++.+..+++++.++=
T Consensus       126 e~Gv~v~~d~~Eav~------~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~  199 (242)
T d2b0ja2         126 DVGLKVTSDDREAVE------GADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITS  199 (242)
T ss_dssp             GGTCEEESCHHHHHT------TCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             HCCCEEECCHHHHHh------cCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEEC
Confidence            346677788888773      7788886663 3445556655554332  255544445555666677666666677553

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.48  E-value=1.2  Score=37.02  Aligned_cols=82  Identities=22%  Similarity=0.254  Sum_probs=52.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      ..+.|.|+++.+|+++++.+.+ .++.++...+++.  +.+..               ..+.+.+    ...+   +..|
T Consensus         7 K~alITGas~GIG~aia~~la~-~G~~Vvi~~~~~~--~~~~~---------------~~~~~~~----~g~~~~~~~~D   64 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGR-RGASVVVNYGSSS--KAAEE---------------VVAELKK----LGAQGVAIQAD   64 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHH---------------HHHHHHH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEcCCCh--HHHHH---------------HHHHHHH----cCCCceEecCC
Confidence            3578999999999999999884 6888875444432  11111               1112211    2223   4568


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      ++.++...+.+..+.+.  +++++|-..|
T Consensus        65 ~~~~~~v~~~~~~~~~~~g~idilinnag   93 (259)
T d1ja9a_          65 ISKPSEVVALFDKAVSHFGGLDFVMSNSG   93 (259)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCcEEEeccc
Confidence            89999988877766654  5777877654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=1.7  Score=35.91  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=53.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEcCC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (300)
                      .+.|.|+++++|+++++.+.+ .+..++. ++++.  +...+..              +++.++ .....+. +..|.|.
T Consensus         5 valITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~~--------------~~l~~~-~~~~~~~~~~~Dv~~   65 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLL-KGAKVAL-VDWNL--EAGVQCK--------------AALHEQ-FEPQKTLFIQCDVAD   65 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHTTT-SCGGGEEEEECCTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHh-cCCCcEEEEEeecCC
Confidence            467789999999999999885 6888654 45432  1111100              111110 0001111 3468999


Q ss_pred             chhHHHHHHHHHHc--CCCEEEeCCCCC
Q 022250          116 ASTVYDNVKQATAF--GMRSVVYVPHIQ  141 (300)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTTG~~  141 (300)
                      ++...+.+..+.+.  ++++++-.-|..
T Consensus        66 ~~~v~~~~~~~~~~~G~iDilVnnAg~~   93 (254)
T d2gdza1          66 QQQLRDTFRKVVDHFGRLDILVNNAGVN   93 (254)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHcCCcCeeccccccc
Confidence            99998888887764  689998877654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=83.80  E-value=0.34  Score=38.83  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=25.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      -||+|+|+ |.||+.++..++. .+++++ ++|.+
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~-~G~~V~-l~D~~   36 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSAS-KGTPIL-MKDIN   36 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHH-TTCCEE-EECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEECC
Confidence            46999998 9999999987774 588866 67754

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=83.64  E-value=1.4  Score=36.43  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             ceEEEE-cCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----cCcCCCCcceecCHHHHHhcccccCCccEE
Q 022250           36 IKVIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----DMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (300)
Q Consensus        36 ikV~V~-Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~----g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (300)
                      +.|+|+ |+++++|+++++.+.+ .++.++....++.  .++..+.    .......+.+..|.......  .....+..
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~-~Ga~V~i~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~   76 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHA-EGYAVCLHYHRSA--AEANALSATLNARRPNSAITVQADLSNVATA--PVSGADGS   76 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSCBC--CCC----C
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEeCCCH--HHHHHHHHHHHhhcCCceEEEEeeccccccc--cccccccc
Confidence            346655 9999999999999884 6888775444321  1111110    00000111111111111000  00112334


Q ss_pred             EEcCCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          111 IDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       111 IDfT~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .|.|.++...+.+..+.+.  +++++|-..|
T Consensus        77 ~dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG  107 (284)
T d1e7wa_          77 APVTLFTRCAELVAACYTHWGRCDVLVNNAS  107 (284)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCEEEecCC
Confidence            5677777777777776655  6888886654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.38  E-value=1.8  Score=35.91  Aligned_cols=82  Identities=18%  Similarity=0.122  Sum_probs=54.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEE
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (300)
                      ..+.|.|+++.+|+++++.+.+ .++.++. .+++.  +.+.+..              +++-+     ...+   +..|
T Consensus        12 K~alITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~~~~~~--------------~~l~~-----~g~~~~~~~~D   68 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFAT-AGASVVV-SDINA--DAANHVV--------------DEIQQ-----LGGQAFACRCD   68 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHT-TTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHH-----cCCcEEEEEcc
Confidence            4688999999999999998874 6888664 45432  1111111              11111     1222   4668


Q ss_pred             cCCchhHHHHHHHHHHc--CCCEEEeCCCC
Q 022250          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (300)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTTG~  140 (300)
                      .|.++...+.+..+.+.  ++++++-..|.
T Consensus        69 vs~~~~~~~~~~~~~~~~g~iDilvnnAG~   98 (255)
T d1fmca_          69 ITSEQELSALADFAISKLGKVDILVNNAGG   98 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEeeeCCcC
Confidence            89999998888888775  68899876653

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=83.37  E-value=2.1  Score=35.63  Aligned_cols=82  Identities=22%  Similarity=0.308  Sum_probs=51.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (300)
                      .+.|.|+++.||+++++.+.+ .++.++ +.+++.  +...+.              .+++.+.   ..+..   +..|.
T Consensus         6 ~alITGas~GIG~aia~~la~-~Ga~V~-i~~r~~--~~l~~~--------------~~~~~~~---~~~~~~~~~~~Dv   64 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAA-EGAKLS-LVDVSS--EGLEAS--------------KAAVLET---APDAEVLTTVADV   64 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHH--------------HHHHHHH---CTTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH--------------HHHHHhh---CCCCeEEEEeccC
Confidence            477889999999999999885 688865 455432  111110              1122110   01222   34589


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      |.++.+.+.+..+.+.  +++++|-.-|
T Consensus        65 t~~~~v~~~~~~~~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          65 SDEAQVEAYVTATTERFGRIDGFFNNAG   92 (258)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            9999998888887764  5888885443

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.17  E-value=0.64  Score=36.37  Aligned_cols=70  Identities=9%  Similarity=0.000  Sum_probs=37.6

Q ss_pred             ceEEEEcCCchHHHHHH--HHHHhcCC---cEEEEEEecCCC-Ccchhh----hhcCcCCCCcceecCHHHHHhcccccC
Q 022250           36 IKVIINGAVKEIGRAAV--IAVTKARG---MEVAGAIDSHSV-GEDIGM----VCDMEQPLEIPVMSDLTMVLGSISQSK  105 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~--~~i~~~~~---~eLvg~vd~~~~-g~d~~~----~~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (300)
                      |||+|+|+ |..|...+  -.+....+   -|| ..+|.+.. .+.+.+    ...  ....+.++++.++.+      .
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el-~L~Did~~k~~~~~d~~~~~~~--~~~~~~~t~~~~~~l------~   70 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEV-IFYDIDEEKQKIVVDFVKRLVK--DRFKVLISDTFEGAV------V   70 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEE-EEECSCHHHHHHHHHHHHHHHT--TSSEEEECSSHHHHH------T
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEE-EEEecCcHHHHHHHHHHHhhhc--cCceEEEecCccccc------C
Confidence            79999998 87665533  22333332   344 46775420 000111    111  234455667777877      4


Q ss_pred             CccEEEEcCC
Q 022250          106 ARAVVIDFTD  115 (300)
Q Consensus       106 ~~DVVIDfT~  115 (300)
                      ++|+||....
T Consensus        71 ~aDvVVita~   80 (162)
T d1up7a1          71 DAKYVIFQFR   80 (162)
T ss_dssp             TCSEEEECCC
T ss_pred             CCCEEEEecc
Confidence            7898885443

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.10  E-value=1.3  Score=36.64  Aligned_cols=75  Identities=12%  Similarity=0.100  Sum_probs=45.8

Q ss_pred             cceEEEE-cCCchHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---
Q 022250           35 NIKVIIN-GAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---  108 (300)
Q Consensus        35 ~ikV~V~-Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---  108 (300)
                      .=||+|+ |+++++|+++++.+.+  ..++.++. ++++.  ..+.++.              +++..+   ..+..   
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~-~~r~~--~~l~~~~--------------~~l~~~---~~~~~~~~   64 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLV-SARSE--SMLRQLK--------------EELGAQ---QPDLKVVL   64 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEE-EESCH--HHHHHHH--------------HHHHHH---CTTSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEE-EECCH--HHHHHHH--------------HHHHhh---cCCceEEE
Confidence            3466666 9999999999999875  46888775 44432  1111111              111110   01222   


Q ss_pred             EEEEcCCchhHHHHHHHHHHc
Q 022250          109 VVIDFTDASTVYDNVKQATAF  129 (300)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~  129 (300)
                      +..|.|.++...+.+..+.+.
T Consensus        65 ~~~Dvs~~~~v~~l~~~~~~~   85 (259)
T d1oaaa_          65 AAADLGTEAGVQRLLSAVREL   85 (259)
T ss_dssp             EECCTTSHHHHHHHHHHHHHS
T ss_pred             EEccCCCHHHHHHHHHHHHHh
Confidence            356889999998888877774

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=83.04  E-value=1.6  Score=36.43  Aligned_cols=80  Identities=20%  Similarity=0.161  Sum_probs=52.2

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      ..+.|.|+++.||+++++.+.+ .++.++ +.+++.  ++..                  ++.+++  ..++ =+..|.|
T Consensus         6 K~alVTGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~~~------------------~~~~~~--~~~~~~~~~Dv~   61 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVA-AGARVV-LADVLD--EEGA------------------ATAREL--GDAARYQHLDVT   61 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHH------------------HHHHTT--GGGEEEEECCTT
T ss_pred             CEEEEeCcCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHH------------------HHHHHh--CCceEEEEcccC
Confidence            4588999999999999999885 588865 455432  1111                  111110  0112 2456788


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  +++++|=.-|
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDilVnnAg   88 (254)
T d1hdca_          62 IEEDWQRVVAYAREEFGSVDGLVNNAG   88 (254)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCccEEEecCc
Confidence            999988888877664  6888876544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.00  E-value=0.6  Score=35.99  Aligned_cols=32  Identities=31%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCc-EEEEEEec
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (300)
                      ||+|+|++|++|+.++-.+...+-. ||+ .+|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~-L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVV-FVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEE-EECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEE-EEec
Confidence            8999997799999999988876555 554 6773

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.94  E-value=0.99  Score=37.62  Aligned_cols=81  Identities=15%  Similarity=0.120  Sum_probs=51.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      ..+.|.|+++.+|+++++.+.+ .+..++ +.+++.  ..+.++               .+-+.    ....-+..|.+.
T Consensus         7 K~alITGas~GIG~aia~~la~-~Ga~V~-~~~~~~--~~~~~~---------------~~~~~----~~~~~~~~Dv~~   63 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLG-EGAKVA-FSDINE--AAGQQL---------------AAELG----ERSMFVRHDVSS   63 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEE-EECSCH--HHHHHH---------------HHHHC----TTEEEECCCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHH---------------HHHhC----CCeEEEEeecCC
Confidence            3577789999999999999885 688865 455432  111111               11111    011234467888


Q ss_pred             chhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      ++...+.+..+.+.  ++++++-..|
T Consensus        64 ~~~~~~~~~~~~~~~g~iDilVnnAG   89 (253)
T d1hxha_          64 EADWTLVMAAVQRRLGTLNVLVNNAG   89 (253)
T ss_dssp             HHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEeccc
Confidence            88888888877664  6888887655

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=82.86  E-value=0.63  Score=40.04  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      -||.|.|++|-+|+.+++.+.+ .++++++.+.
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~-~G~~V~~~vR   43 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLE-HGYKVRGTAR   43 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEeC
Confidence            6899999999999999998885 4899998774

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.58  E-value=0.64  Score=39.62  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=26.9

Q ss_pred             eE-EEEcCCchHHHHHHHHHHhcCCcEEEEEEe
Q 022250           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (300)
Q Consensus        37 kV-~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (300)
                      || .|.|++|-+|+.+++.+.+ .+++++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~-~g~~V~~i~r   33 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLE-KGYEVHGIVR   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CEEEEecCCcHHHHHHHHHHHH-CcCEEEEEEC
Confidence            78 6999999999999999986 5999988653

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.41  E-value=1.4  Score=35.33  Aligned_cols=149  Identities=16%  Similarity=0.177  Sum_probs=75.8

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|+|+|+ |--|++++..+. +.++.++-.+.+..  .... .+   .+-|..+ -+++|+.+      ..|+|.-.++
T Consensus        17 k~IaViGY-GsQG~AhAlNLr-DSG~~V~VGLr~gs--~s~~-~A---~~~Gf~v-~~~~eA~~------~aDiim~L~P   81 (182)
T d1np3a2          17 KKVAIIGY-GSQGHAHACNLK-DSGVDVTVGLRSGS--ATVA-KA---EAHGLKV-ADVKTAVA------AADVVMILTP   81 (182)
T ss_dssp             SCEEEECC-SHHHHHHHHHHH-HTTCCEEEECCTTC--HHHH-HH---HHTTCEE-ECHHHHHH------TCSEEEECSC
T ss_pred             CEEEEEee-CcHhHHHHhhhh-hcCCCEEEEcCCCC--ccHH-HH---hhhcccc-ccHHHHhh------hcCeeeeecc
Confidence            68999998 999999999987 56887765554321  1111 11   1234444 35677774      7898886654


Q ss_pred             chhHHHHHH----HHHHcCCCEEEeCCCCCHHHHHHHHHHhhhCCCeEEEcCCCcHHHHHHHHHHHHhccCCCCeEEEEc
Q 022250          116 ASTVYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES  191 (300)
Q Consensus       116 p~~~~~~~~----~al~~G~~vVigTTG~~~e~~~~L~~~a~~~~i~iv~a~N~SiGv~ll~~~a~~~~~~~~dieIiE~  191 (300)
                      -+...+..+    -.++.|.-+.. .-||+-- ...|   --..++-++..+-=+.|-.+=.++.+- .. .+..  +-.
T Consensus        82 D~~q~~vy~~~I~p~lk~g~~L~F-aHGfnIh-~~~I---~pp~~vdV~mvAPKgpG~~VR~~y~~G-~G-vp~l--~AV  152 (182)
T d1np3a2          82 DEFQGRLYKEEIEPNLKKGATLAF-AHGFSIH-YNQV---VPRADLDVIMIAPKAPGHTVRSEFVKG-GG-IPDL--IAI  152 (182)
T ss_dssp             HHHHHHHHHHHTGGGCCTTCEEEE-SCCHHHH-TTSS---CCCTTCEEEEEEESSCSHHHHHHHHTT-CC-CCEE--EEE
T ss_pred             hHHHHHHHHHhhhhhcCCCcEEEE-eccceEE-eeee---ecCCCCceEeeccccccchhHHHhhcC-Cc-cceE--EEE
Confidence            333333332    23444444443 2355421 1111   111224444444444554332223211 11 1211  122


Q ss_pred             cCCCCCCCchHHHHHHHHHHh
Q 022250          192 RPNARDFPSPDATQIANNLSN  212 (300)
Q Consensus       192 Hh~K~DaPSGTA~~l~~~i~~  212 (300)
                      |   .| +||.|+.++-+.+.
T Consensus       153 ~---qD-~sg~A~~~alayA~  169 (182)
T d1np3a2         153 Y---QD-ASGNAKNVALSYAC  169 (182)
T ss_dssp             E---EC-SSSCHHHHHHHHHH
T ss_pred             E---eC-CCccHHHHHHHHHH
Confidence            2   23 68888888877765

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=82.19  E-value=0.94  Score=37.75  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=50.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccE---EEEc
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---VIDf  113 (300)
                      .+.|.|+++.||+++++.+.+ .++.++. .+++.. ..+.++.              +++.+    .....+   ..|.
T Consensus         6 ~alITGas~GIG~aiA~~la~-~Ga~V~~-~~r~~~-~~~~~~~--------------~~~~~----~~g~~~~~~~~Dv   64 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALAA-QGADIVL-NGFGDA-AEIEKVR--------------AGLAA----QHGVKVLYDGADL   64 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH-TTCEEEE-ECCSCH-HHHHHHH--------------HHHHH----HHTSCEEEECCCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EeCCcH-HHHHHHH--------------HHHHH----hcCCcEEEEECCC
Confidence            467789999999999999884 6787654 443320 1111110              11111    112233   3588


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      |.++...+.+..+.+.  +++++|=.-|
T Consensus        65 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG   92 (260)
T d1x1ta1          65 SKGEAVRGLVDNAVRQMGRIDILVNNAG   92 (260)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCcEEEeecc
Confidence            9999988888877664  5888885443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=82.11  E-value=1  Score=37.24  Aligned_cols=80  Identities=23%  Similarity=0.348  Sum_probs=51.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      ..+.|.|+++.+|+++++.+.+ .+++++. .+++.  +++                  +++++++ .....-+..|++.
T Consensus         6 K~alItGas~GIG~aia~~l~~-~G~~V~~-~~r~~--~~~------------------~~~~~~~-~~~~~~~~~Dls~   62 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAR-EGASLVA-VDREE--RLL------------------AEAVAAL-EAEAIAVVADVSD   62 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHH------------------HHHHHTC-CSSEEEEECCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHHc-CCceEEEEecCCC
Confidence            3577889999999999999885 6888874 44431  111                  2222210 0011224668899


Q ss_pred             chhHHHHHHHHHHc--CCCEEEeCC
Q 022250          116 ASTVYDNVKQATAF--GMRSVVYVP  138 (300)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTT  138 (300)
                      ++...+.+..+.+.  ++++++--.
T Consensus        63 ~~~i~~~~~~i~~~~g~iDiLinnA   87 (241)
T d2a4ka1          63 PKAVEAVFAEALEEFGRLHGVAHFA   87 (241)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred             HHHHHHHHHHHHHHhCCccEecccc
Confidence            99888888877763  588887753

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.02  E-value=0.67  Score=39.63  Aligned_cols=32  Identities=22%  Similarity=0.182  Sum_probs=26.9

Q ss_pred             cceEEEEcCCchHHHHHHHHHHhcCCcEEEEEE
Q 022250           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (300)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (300)
                      +.+|.|.|++|-+|+.+++.+.+ .+.++.++.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~-~g~~V~~~d   47 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLK-LDQKVVGLD   47 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHH-CcCEEEEEE
Confidence            35788899999999999998885 588988743

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.66  E-value=1.1  Score=36.64  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=26.5

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .++.|.|+++.||+++++.+.+ .+.+++. .+++
T Consensus         5 K~~lVTGas~GIG~aia~~l~~-~Ga~V~~-~~r~   37 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQ-EGAEVTI-CARN   37 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EECC
Confidence            4689999999999999999885 5888664 4543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.58  E-value=1.4  Score=36.32  Aligned_cols=33  Identities=33%  Similarity=0.534  Sum_probs=26.6

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      .++.|.|+++.+|+++++.+.+ .+.+++. ++++
T Consensus         8 K~~lITGas~GIG~aia~~la~-~G~~V~~-~~r~   40 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHA-TGARVVA-VSRT   40 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EECC
Confidence            4688999999999999999885 6888664 5543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.23  E-value=1.2  Score=37.30  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=51.5

Q ss_pred             ceEE-EEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc-EEEEc
Q 022250           36 IKVI-INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (300)
Q Consensus        36 ikV~-V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (300)
                      +||+ |.|+++++|+++++.+.+..+..++. .+++.  +...+.              .+++-++   ..++. +..|.
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~-~~r~~--~~~~~~--------------~~~l~~~---~~~~~~~~~Dv   62 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVL-TARDV--TRGQAA--------------VQQLQAE---GLSPRFHQLDI   62 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEE-EESSH--HHHHHH--------------HHHHHHT---TCCCEEEECCT
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEE-EECCH--HHHHHH--------------HHHHHhc---CCcEEEEEEec
Confidence            6785 67999999999999988666776664 34432  111111              1111110   01222 35688


Q ss_pred             CCchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      |.++.+.+.+..+.+.  +++++|-.-|
T Consensus        63 s~~~sv~~~~~~~~~~~g~iDiLVnNAG   90 (275)
T d1wmaa1          63 DDLQSIRALRDFLRKEYGGLDVLVNNAG   90 (275)
T ss_dssp             TCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            9999888888777663  5888876544

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.01  E-value=0.72  Score=37.77  Aligned_cols=32  Identities=34%  Similarity=0.451  Sum_probs=26.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecC
Q 022250           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (300)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (300)
                      ||.|.|+++.+|+++++.+.+ .+++++. +|+.
T Consensus         4 kVlITGas~GIG~aia~~l~~-~G~~V~~-~~~~   35 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKK-NGYTVLN-IDLS   35 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTEEEEE-EESS
T ss_pred             EEEEECCCCHHHHHHHHHHHH-CCCEEEE-EECC
Confidence            789999999999999999885 5888664 5654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=80.88  E-value=2.6  Score=35.23  Aligned_cols=80  Identities=19%  Similarity=0.219  Sum_probs=52.0

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCc-cEEEEcC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (300)
                      ..+.|.|+++.+|+++++.+.+ .+++++. ++++.  +.+                  +++.++.  ..++ -+..|.+
T Consensus         6 K~alITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~l------------------~~~~~~~--~~~~~~~~~Dv~   61 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVA-EGAKVAV-LDKSA--ERL------------------AELETDH--GDNVLGIVGDVR   61 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHH------------------HHHHHHH--GGGEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHH------------------HHHHHHc--CCCeeEEecccc
Confidence            3588899999999999999885 5888765 55432  111                  1111100  0122 2456888


Q ss_pred             CchhHHHHHHHHHHc--CCCEEEeCCC
Q 022250          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTTG  139 (300)
                      .++...+.+..+.+.  ++++++-.-|
T Consensus        62 ~~~~~~~~~~~~~~~~g~idilvnnAG   88 (276)
T d1bdba_          62 SLEDQKQAASRCVARFGKIDTLIPNAG   88 (276)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             cHHHHHHHHHHHHHHhCCccccccccc
Confidence            999888888877765  6888875444

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.45  E-value=3.4  Score=34.04  Aligned_cols=79  Identities=22%  Similarity=0.313  Sum_probs=50.6

Q ss_pred             EEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCcc---EEEEcC
Q 022250           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT  114 (300)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVIDfT  114 (300)
                      +.|.|+++++|+.+++.+.+ .+..++. ++++.  +++.++.              +++-+     ....   +..|.|
T Consensus        10 ~lITGas~GIG~~ia~~la~-~G~~V~l-~~r~~--~~l~~~~--------------~~~~~-----~~~~~~~~~~Dvs   66 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAK-LKSKLVL-WDINK--HGLEETA--------------AKCKG-----LGAKVHTFVVDCS   66 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECCTT
T ss_pred             EEEeCCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEeeCC
Confidence            66779999999999999885 5888654 66542  1222111              11111     1222   456788


Q ss_pred             CchhHHHHHHHHHH-cC-CCEEEeCCC
Q 022250          115 DASTVYDNVKQATA-FG-MRSVVYVPH  139 (300)
Q Consensus       115 ~p~~~~~~~~~al~-~G-~~vVigTTG  139 (300)
                      .++.+.+.++.+.+ .| +++++-..|
T Consensus        67 ~~~~v~~~~~~i~~~~g~idilinnag   93 (244)
T d1yb1a_          67 NREDIYSSAKKVKAEIGDVSILVNNAG   93 (244)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCceeEeecc
Confidence            99998888887764 44 778776554

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.31  E-value=1.2  Score=35.11  Aligned_cols=98  Identities=10%  Similarity=0.160  Sum_probs=57.9

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEcCC
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (300)
                      .+|+|+|+ |++||.+++.+.. -++.++ ++|.++. +.+....     .|.. ..++++++      ...|++|=.|-
T Consensus        25 k~v~V~Gy-G~iG~g~A~~~rg-~G~~V~-v~e~dp~-~al~A~~-----dG~~-v~~~~~a~------~~adivvtaTG   88 (163)
T d1li4a1          25 KVAVVAGY-GDVGKGCAQALRG-FGARVI-ITEIDPI-NALQAAM-----EGYE-VTTMDEAC------QEGNIFVTTTG   88 (163)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCHH-HHHHHHH-----TTCE-ECCHHHHT------TTCSEEEECSS
T ss_pred             CEEEEecc-ccccHHHHHHHHh-CCCeeE-eeecccc-hhHHhhc-----CceE-eeehhhhh------hhccEEEecCC
Confidence            57999997 9999999998875 477655 4664321 1111110     1222 34677877      47898886663


Q ss_pred             c-hhH-HHHHHHHHHcCCCEEEeCCC-CCHH-HHHHHHHHh
Q 022250          116 A-STV-YDNVKQATAFGMRSVVYVPH-IQLE-TVSALSAFC  152 (300)
Q Consensus       116 p-~~~-~~~~~~al~~G~~vVigTTG-~~~e-~~~~L~~~a  152 (300)
                      . ... .+++.   +.+-.++++..| |+.| +.+.|++.+
T Consensus        89 n~~vI~~eh~~---~MKdgaIL~N~Ghfd~EId~~~L~~~~  126 (163)
T d1li4a1          89 CIDIILGRHFE---QMKDDAIVCNIGHFDVEIDVKWLNENA  126 (163)
T ss_dssp             CSCSBCHHHHT---TCCTTEEEEECSSSTTSBCHHHHHHHC
T ss_pred             CccchhHHHHH---hccCCeEEEEeccccceecHHHHhhcc
Confidence            2 322 33333   555666777665 5544 556666654

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.02  E-value=7  Score=30.19  Aligned_cols=88  Identities=9%  Similarity=0.110  Sum_probs=55.1

Q ss_pred             ceEEEEcCCchHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCcCCCCcceecCHHHHHhcccccCCccEEEEc--
Q 022250           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF--  113 (300)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~~~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf--  113 (300)
                      =+|+|+.=+|.++..+...+.+ .++-+.-++...   .+          .++    +..++++...++++..+|+-+  
T Consensus        21 G~valiSqSG~l~~~~~~~~~~-~g~G~s~~vs~G---n~----------~~~----~~~d~l~~l~~D~~t~~i~l~~E   82 (161)
T d2csua2          21 GNVAFISQSGALGAGIVYKTIK-EDIGFSKFISVG---NM----------ADV----DFAELMEYLADTEEDKAIALYIE   82 (161)
T ss_dssp             CSEEEEESCHHHHHHHHHHHHH-TTCEESEEEECT---TC----------CSS----CHHHHHHHHTTCSSCCEEEEEES
T ss_pred             CCEEEEECCHHHHHHHHHHHHh-CCCCeeEEEecC---Cc----------ccc----CHHHHHHHHhcCCCCcEEEEEec
Confidence            3599999999999999987664 566665555432   11          111    223333333335666776655  


Q ss_pred             --CCchhHHHHHHHHHHcCCCEEEeCCCCCH
Q 022250          114 --TDASTVYDNVKQATAFGMRSVVYVPHIQL  142 (300)
Q Consensus       114 --T~p~~~~~~~~~al~~G~~vVigTTG~~~  142 (300)
                        ..|+...+.++.+. .+||+|+-++|-++
T Consensus        83 ~~~~~~~f~~~~r~~~-~~Kpvv~~k~G~s~  112 (161)
T d2csua2          83 GVRNGKKFMEVAKRVT-KKKPIIALKAGKSE  112 (161)
T ss_dssp             CCSCHHHHHHHHHHHH-HHSCEEEEECC---
T ss_pred             CCcCHHHHHHHHHHHh-ccCCeeEEEeeccc
Confidence              46888888888775 56999998776543