Citrus Sinensis ID: 022272

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKDFFL
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHccccccccc
ccccccccccccccccccccccccccccccEEEcccccccHccccccEEEEEEEEEcccccccccccccccHEEHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHccccccccc
maaksqivtgftmpmtpapsssssssssslcmvkkplttsffnggvgalkvtrlriapssrshcyrqgggalntRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKkelsgsskdffl
maaksqivtgftmpmtpapssssssssssLCMVKKPLTTSFFNGGVGALKVTrlriapssrshcyrqgggalntRMNLFDRLARVVKSYANAilssfedpEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKaqldqqknvVNNLVSNTRLLESKiqearskkdtlKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLetssvdddlanlkkelsgsskdffl
MAAKSQIVTGFTMPMTPAPssssssssssLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKDFFL
******************************CMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK***************************************************************************************************************************************************************************************
********TGFT**************************TSFFNGGVGALK*************************MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA*****************DWYRKAQLALQKGEEDLAREALKRRK**************************************************************************KMEEKVLT************************************************
MAAKSQIVTGFTMPM****************MVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLAS**************SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE******************TKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELS********
*********GFTMPMTPA**********SLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELS********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASxxxxxxxxxxxxxxxxxxxxxAQLALQKGEEDLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKVSEMLGNVNTSSALSAxxxxxxxxxxxxxxxxxxxxxTTDDLEGKFALLETSSVDDDLANLKKELSGSSKDFFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
Q03943323 Membrane-associated 30 kD N/A no 0.933 0.866 0.774 1e-121
Q8S0J7317 Probable membrane-associa yes no 0.896 0.848 0.725 1e-109
O80796330 Membrane-associated prote yes no 0.97 0.881 0.707 1e-108
Q55707267 Uncharacterized protein s N/A no 0.733 0.823 0.484 5e-46
Q9RUB7223 Phage shock protein A hom yes no 0.736 0.991 0.340 2e-25
P0AFM8222 Phage shock protein A OS= yes no 0.71 0.959 0.313 2e-19
P0AFM6222 Phage shock protein A OS= N/A no 0.71 0.959 0.313 2e-19
P0AFM7222 Phage shock protein A OS= N/A no 0.71 0.959 0.313 2e-19
P54617227 Phage shock protein A hom yes no 0.683 0.903 0.311 3e-12
O32201225 Protein LiaH OS=Bacillus no no 0.55 0.733 0.290 1e-09
>sp|Q03943|IM30_PEA Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1 Back     alignment and function desciption
 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/297 (77%), Positives = 252/297 (84%), Gaps = 17/297 (5%)

Query: 1   MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNG-GVGALKVTRLRIAPS 59
           M  K QI +G  +P  P   SSS        ++KKPL T+ F    V  LK   +RIA  
Sbjct: 1   MTTKFQIFSG--LPSAPLQPSSS--------LLKKPLATTLFGTRPVDTLKFRVMRIAKP 50

Query: 60  SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
            R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMR
Sbjct: 51  VR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMR 104

Query: 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
           QATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA++L
Sbjct: 105 QATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSL 164

Query: 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
           KAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA
Sbjct: 165 KAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 224

Query: 240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSK 296
           LSAFEKMEEKV+TMESQA++L QLTTDDLEGKFA+LETSSVDDDLANLKKEL+GSSK
Sbjct: 225 LSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAMLETSSVDDDLANLKKELAGSSK 281

Pisum sativum (taxid: 3888)
>sp|Q8S0J7|IM30_ORYSJ Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1 Back     alignment and function description
>sp|O80796|VIPP1_ARATH Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis thaliana GN=VIPP1 PE=1 SV=1 Back     alignment and function description
>sp|Q55707|Y617_SYNY3 Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0617 PE=3 SV=1 Back     alignment and function description
>sp|Q9RUB7|PSPA_DEIRA Phage shock protein A homolog OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1473 PE=1 SV=1 Back     alignment and function description
>sp|P0AFM8|PSPA_SHIFL Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2 Back     alignment and function description
>sp|P0AFM6|PSPA_ECOLI Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1 SV=2 Back     alignment and function description
>sp|P0AFM7|PSPA_ECO57 Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2 Back     alignment and function description
>sp|P54617|PSPA_BACSU Phage shock protein A homolog OS=Bacillus subtilis (strain 168) GN=ydjF PE=1 SV=3 Back     alignment and function description
>sp|O32201|LIAH_BACSU Protein LiaH OS=Bacillus subtilis (strain 168) GN=liaH PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
224138834339 predicted protein [Populus trichocarpa] 0.986 0.873 0.774 1e-128
363806682322 uncharacterized protein LOC100818209 [Gl 0.943 0.878 0.818 1e-126
363807044323 uncharacterized protein LOC100781742 [Gl 0.946 0.879 0.811 1e-125
255578930312 Membrane-associated 30 kDa protein, chlo 0.976 0.939 0.775 1e-124
449468854332 PREDICTED: membrane-associated 30 kDa pr 0.983 0.888 0.784 1e-122
225430912324 PREDICTED: probable membrane-associated 0.953 0.882 0.777 1e-121
729842323 RecName: Full=Membrane-associated 30 kDa 0.933 0.866 0.774 1e-120
388510656326 unknown [Lotus japonicus] 0.956 0.880 0.781 1e-118
359478255314 PREDICTED: membrane-associated 30 kDa pr 0.916 0.875 0.746 1e-117
357473093319 Membrane-associated 30 kDa protein [Medi 0.94 0.884 0.760 1e-114
>gi|224138834|ref|XP_002322913.1| predicted protein [Populus trichocarpa] gi|222867543|gb|EEF04674.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/302 (77%), Positives = 267/302 (88%), Gaps = 6/302 (1%)

Query: 1   MAAKSQIVTGFTMPMTPAP-----SSSSSSSSSSLCMVKK-PLTTSFFNGGVGALKVTRL 54
           MA KSQ++TG T+PM   P     S+++ +++++LCMVK+  LTTSFFNGGV ALKV R+
Sbjct: 1   MAIKSQLITGLTLPMPHPPYTSSSSNNNGNNNTTLCMVKRRTLTTSFFNGGVEALKVARI 60

Query: 55  RIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDD 114
           R + S+RS CYRQGGGAL T MNLFDR  RVVKSYANAI+SSFEDPEKILEQ VLEMNDD
Sbjct: 61  RTSLSTRSQCYRQGGGALGTCMNLFDRFGRVVKSYANAIISSFEDPEKILEQTVLEMNDD 120

Query: 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174
           L KMRQATAQVLASQKRLENK KAA+ ASE+WYRKAQLALQKGEEDLAREALKRRK+YAD
Sbjct: 121 LTKMRQATAQVLASQKRLENKYKAAQLASEEWYRKAQLALQKGEEDLAREALKRRKTYAD 180

Query: 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV 234
           NAN+ KAQLDQQK VV NLVSNTRLLESK+QEA+SKKDTLKARAQSAKT TK++EMLGNV
Sbjct: 181 NANSFKAQLDQQKGVVENLVSNTRLLESKMQEAKSKKDTLKARAQSAKTTTKMNEMLGNV 240

Query: 235 NTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGS 294
           NTS+AL+AFEKMEEKV+ MES+A++L QLTT++L+GKFALLE SSVDDDL NLKKEL GS
Sbjct: 241 NTSNALAAFEKMEEKVMAMESEAEALGQLTTNELDGKFALLEGSSVDDDLENLKKELGGS 300

Query: 295 SK 296
           SK
Sbjct: 301 SK 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|363806682|ref|NP_001242008.1| uncharacterized protein LOC100818209 [Glycine max] gi|255639265|gb|ACU19931.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|363807044|ref|NP_001242581.1| uncharacterized protein LOC100781742 [Glycine max] gi|255641682|gb|ACU21113.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255578930|ref|XP_002530318.1| Membrane-associated 30 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223530174|gb|EEF32085.1| Membrane-associated 30 kDa protein, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449468854|ref|XP_004152136.1| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Cucumis sativus] gi|449484741|ref|XP_004156967.1| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225430912|ref|XP_002276816.1| PREDICTED: probable membrane-associated 30 kDa protein, chloroplastic [Vitis vinifera] gi|297735245|emb|CBI17607.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|729842|sp|Q03943.1|IM30_PEA RecName: Full=Membrane-associated 30 kDa protein, chloroplastic; Short=M30; Flags: Precursor gi|169107|gb|AAA53545.1| IM30 [Pisum sativum] Back     alignment and taxonomy information
>gi|388510656|gb|AFK43394.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359478255|ref|XP_002273068.2| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357473093|ref|XP_003606831.1| Membrane-associated 30 kDa protein [Medicago truncatula] gi|355507886|gb|AES89028.1| Membrane-associated 30 kDa protein [Medicago truncatula] gi|388508128|gb|AFK42130.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
TAIR|locus:2206290330 PTAC4 "plastid transcriptional 0.97 0.881 0.686 1.7e-98
TIGR_CMR|CPS_3772221 CPS_3772 "phage shock protein 0.733 0.995 0.337 1.6e-29
TIGR_CMR|SO_1807227 SO_1807 "phage shock protein A 0.733 0.969 0.325 1.2e-28
TIGR_CMR|CPS_4751220 CPS_4751 "phage shock protein 0.72 0.981 0.304 2.2e-27
UNIPROTKB|Q9KRG4222 VC1678 "Phage shock protein A" 0.72 0.972 0.344 4.5e-27
TIGR_CMR|VC_1678222 VC_1678 "phage shock protein A 0.72 0.972 0.344 4.5e-27
UNIPROTKB|P0AFM6222 pspA [Escherichia coli K-12 (t 0.72 0.972 0.308 1.5e-26
UNIPROTKB|Q9F4H4221 pspA "Phage shock protein A" [ 0.73 0.990 0.3 6.6e-26
UNIPROTKB|Q81KD9221 BAS4700 "Uncharacterized prote 0.716 0.972 0.275 6.1e-23
TIGR_CMR|BA_5061221 BA_5061 "conserved hypothetica 0.716 0.972 0.275 6.1e-23
TAIR|locus:2206290 PTAC4 "plastid transcriptionally active 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 204/297 (68%), Positives = 238/297 (80%)

Query:     1 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPS 59
             MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  
Sbjct:     1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACD 60

Query:    60 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
             +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMR
Sbjct:    61 NRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMR 115

Query:   120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
             QATAQVLASQK+L+NK KAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA AL
Sbjct:   116 QATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATAL 175

Query:   180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
             K QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AKTATKV EM+G VNTS A
Sbjct:   176 KTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGA 235

Query:   240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSK 296
             LSAFEKMEEKV+ MES+AD+L Q+ TD+LEGKF +LETSSVDDDLA+LKKELSGSSK
Sbjct:   236 LSAFEKMEEKVMAMESEADALTQIGTDELEGKFQMLETSSVDDDLADLKKELSGSSK 292
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=ISS
GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP
GO:0016050 "vesicle organization" evidence=IMP
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009295 "nucleoid" evidence=IDA
GO:0009508 "plastid chromosome" evidence=IDA
TIGR_CMR|CPS_3772 CPS_3772 "phage shock protein A" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1807 SO_1807 "phage shock protein A" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4751 CPS_4751 "phage shock protein A" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRG4 VC1678 "Phage shock protein A" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1678 VC_1678 "phage shock protein A" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0AFM6 pspA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9F4H4 pspA "Phage shock protein A" [Yersinia enterocolitica (taxid:630)] Back     alignment and assigned GO terms
UNIPROTKB|Q81KD9 BAS4700 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5061 BA_5061 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q03943IM30_PEANo assigned EC number0.77440.93330.8668N/Ano
O80796VIPP1_ARATHNo assigned EC number0.70700.970.8818yesno
Q8S0J7IM30_ORYSJNo assigned EC number0.72530.89660.8485yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
COG1842225 COG1842, PspA, Phage shock protein A (IM30), suppr 8e-52
pfam04012220 pfam04012, PspA_IM30, PspA/IM30 family 5e-45
TIGR02977219 TIGR02977, phageshock_pspA, phage shock protein A 7e-45
PRK10698222 PRK10698, PRK10698, phage shock protein PspA; Prov 6e-28
TIGR00998334 TIGR00998, 8a0101, efflux pump membrane protein (m 0.002
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information 
 Score =  169 bits (430), Expect = 8e-52
 Identities = 102/223 (45%), Positives = 142/223 (63%), Gaps = 4/223 (1%)

Query: 76  MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
           M +F RL  +VK+  N +L   EDPEK+LEQA+ +M  +L K RQA AQ +A QK+LE K
Sbjct: 1   MGIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERK 60

Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
            + A+  +E    KA+LALQ G EDLAREAL+ ++S  D A AL+A+L Q +  V  L  
Sbjct: 61  LEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKK 120

Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
               LE KI E R+KK+ LKAR  +AK   KV+  LG  ++SSA++AFE+MEEK+   E+
Sbjct: 121 QLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREA 180

Query: 256 QADS---LNQLTTDDLEGKFA-LLETSSVDDDLANLKKELSGS 294
           +A++   L + + DDL+ +FA     S+VD  LA LK  + G 
Sbjct: 181 RAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAALKARMKGP 223

Length = 225
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family Back     alignment and domain information
>gnl|CDD|213755 TIGR02977, phageshock_pspA, phage shock protein A Back     alignment and domain information
>gnl|CDD|182657 PRK10698, PRK10698, phage shock protein PspA; Provisional Back     alignment and domain information
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug resistance protein A) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
PRK10698222 phage shock protein PspA; Provisional 100.0
TIGR02977219 phageshock_pspA phage shock protein A. Members of 100.0
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 100.0
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 100.0
PTZ00446191 vacuolar sorting protein SNF7-like; Provisional 98.68
KOG1656221 consensus Protein involved in glucose derepression 98.09
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 98.08
PTZ00464211 SNF-7-like protein; Provisional 97.87
KOG2911439 consensus Uncharacterized conserved protein [Funct 97.8
TIGR02977219 phageshock_pspA phage shock protein A. Members of 97.44
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 97.17
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.14
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 96.96
PRK04863 1486 mukB cell division protein MukB; Provisional 96.91
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.84
PRK10698222 phage shock protein PspA; Provisional 96.77
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.38
PRK09039343 hypothetical protein; Validated 96.22
PRK09039343 hypothetical protein; Validated 96.18
PRK02224 880 chromosome segregation protein; Provisional 96.04
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 95.81
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.76
KOG0963 629 consensus Transcription factor/CCAAT displacement 95.64
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.6
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.55
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 95.5
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.48
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 95.27
PRK04863 1486 mukB cell division protein MukB; Provisional 95.24
PRK02224 880 chromosome segregation protein; Provisional 95.22
COG4372 499 Uncharacterized protein conserved in bacteria with 95.2
PRK04778569 septation ring formation regulator EzrA; Provision 95.18
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 95.11
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.05
PRK11637 428 AmiB activator; Provisional 94.85
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 94.73
KOG0971 1243 consensus Microtubule-associated protein dynactin 94.66
KOG2910209 consensus Uncharacterized conserved protein predic 94.66
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.59
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 94.33
PRK11637 428 AmiB activator; Provisional 94.16
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 93.95
PRK04778569 septation ring formation regulator EzrA; Provision 93.71
PHA02562 562 46 endonuclease subunit; Provisional 93.44
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 93.33
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 93.27
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 92.96
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 92.9
PRK10884206 SH3 domain-containing protein; Provisional 92.81
KOG1655218 consensus Protein involved in vacuolar protein sor 92.72
PRK12704 520 phosphodiesterase; Provisional 92.51
PHA02562 562 46 endonuclease subunit; Provisional 92.31
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.3
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 92.23
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 92.23
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 92.19
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 91.83
TIGR03007 498 pepcterm_ChnLen polysaccharide chain length determ 91.7
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 91.63
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 91.53
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 91.29
PF06160 560 EzrA: Septation ring formation regulator, EzrA ; I 91.26
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 91.23
PF13166 712 AAA_13: AAA domain 91.12
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 90.72
TIGR02231 525 conserved hypothetical protein. This family consis 90.54
PF00038312 Filament: Intermediate filament protein; InterPro: 90.41
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 90.35
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 90.34
PRK03918 880 chromosome segregation protein; Provisional 90.17
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 89.93
KOG3230224 consensus Vacuolar assembly/sorting protein DID4 [ 89.66
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 89.55
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 89.41
KOG0996 1293 consensus Structural maintenance of chromosome pro 89.38
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 89.31
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 89.27
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 89.12
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 88.92
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 88.9
KOG0979 1072 consensus Structural maintenance of chromosome pro 88.53
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 88.53
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 88.51
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 87.97
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 87.95
PRK03918880 chromosome segregation protein; Provisional 87.74
TIGR00634 563 recN DNA repair protein RecN. All proteins in this 87.35
PF1004699 BLOC1_2: Biogenesis of lysosome-related organelles 87.0
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 86.73
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 86.53
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 86.11
PRK1542279 septal ring assembly protein ZapB; Provisional 86.09
PRK0084677 hypothetical protein; Provisional 85.79
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 85.66
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 85.52
PRK07720146 fliJ flagellar biosynthesis chaperone; Validated 85.49
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 85.34
COG3883265 Uncharacterized protein conserved in bacteria [Fun 85.1
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 84.9
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 84.87
COG4942420 Membrane-bound metallopeptidase [Cell division and 84.79
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 84.6
PRK0440675 hypothetical protein; Provisional 84.5
PRK0073668 hypothetical protein; Provisional 84.24
PLN02718 603 Probable galacturonosyltransferase 84.17
PRK09343121 prefoldin subunit beta; Provisional 84.12
PRK0432574 hypothetical protein; Provisional 84.02
COG1566352 EmrA Multidrug resistance efflux pump [Defense mec 83.89
PRK0029568 hypothetical protein; Provisional 83.72
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 83.67
KOG0964 1200 consensus Structural maintenance of chromosome pro 83.66
PF05701522 WEMBL: Weak chloroplast movement under blue light; 83.65
CHL00118156 atpG ATP synthase CF0 B' subunit; Validated 83.55
PRK08476141 F0F1 ATP synthase subunit B'; Validated 83.43
COG2433 652 Uncharacterized conserved protein [Function unknow 83.29
KOG0249 916 consensus LAR-interacting protein and related prot 83.26
PF06120301 Phage_HK97_TLTM: Tail length tape measure protein; 83.2
PF03194254 LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa 83.12
KOG0995 581 consensus Centromere-associated protein HEC1 [Cell 82.93
PRK0279372 phi X174 lysis protein; Provisional 82.72
PRK0211973 hypothetical protein; Provisional 82.54
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 82.46
KOG0249 916 consensus LAR-interacting protein and related prot 82.43
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 82.42
PRK13729 475 conjugal transfer pilus assembly protein TraB; Pro 82.02
PF13514 1111 AAA_27: AAA domain 81.95
PF06810155 Phage_GP20: Phage minor structural protein GP20; I 81.78
smart0068559 DM14 Repeats in fly CG4713, worm Y37H9A.3 and huma 81.68
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 81.66
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 81.32
COG3883265 Uncharacterized protein conserved in bacteria [Fun 81.07
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 80.91
KOG2685421 consensus Cystoskeletal protein Tektin [Cytoskelet 80.89
PF10186 302 Atg14: UV radiation resistance protein and autopha 80.8
PF13851201 GAS: Growth-arrest specific micro-tubule binding 80.78
PRK05689147 fliJ flagellar biosynthesis chaperone; Validated 80.63
PF05335188 DUF745: Protein of unknown function (DUF745); Inte 80.5
COG307479 Uncharacterized protein conserved in bacteria [Fun 80.5
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 80.38
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 80.16
PRK00409782 recombination and DNA strand exchange inhibitor pr 80.11
PF04111 314 APG6: Autophagy protein Apg6; InterPro: IPR007243 80.03
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.5e-48  Score=349.01  Aligned_cols=220  Identities=31%  Similarity=0.497  Sum_probs=214.3

Q ss_pred             CchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272           76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ  155 (300)
Q Consensus        76 Msif~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~  155 (300)
                      ||||+||+++|+|++|+++|++|||++||+|+|+||++.+.+++.++|.+++.++++++++.+++..+++|+.+|..||.
T Consensus         1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~   80 (222)
T PRK10698          1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR   80 (222)
T ss_pred             CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022272          156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN  235 (300)
Q Consensus       156 ~G~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~LkAr~~~Akaq~~v~~~~~~~~  235 (300)
                      +|+||||++||.+|..++..+..|+.+++.+...+++|+.++..|+.+|.+++.++.+|++|.++|+++.++|+.+++++
T Consensus        81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~  160 (222)
T PRK10698         81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK  160 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChHHHHhhhccC-CHHHHHHHHHHHcCCCC
Q 022272          236 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETS-SVDDDLANLKKELSGSS  295 (300)
Q Consensus       236 ~~~a~~~feR~eeki~~~ea~aeA~~el~~~~Le~kla~le~~-~vddeLarLKa~l~~~~  295 (300)
                      +++++..|+|||+||.++|++++|+....+++|+.+|+.|+.+ .||++|++||++|+.+.
T Consensus       161 ~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~LK~~~~~~~  221 (222)
T PRK10698        161 LDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAALKAKMKQDN  221 (222)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHHHHHHhcccC
Confidence            9999999999999999999999999776667899999999865 59999999999997654

>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional Back     alignment and domain information
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>KOG2911 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PRK00846 hypothetical protein; Provisional Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PRK04406 hypothetical protein; Provisional Back     alignment and domain information
>PRK00736 hypothetical protein; Provisional Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PRK09343 prefoldin subunit beta; Provisional Back     alignment and domain information
>PRK04325 hypothetical protein; Provisional Back     alignment and domain information
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00295 hypothetical protein; Provisional Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated Back     alignment and domain information
>PRK08476 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12) Back     alignment and domain information
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK02793 phi X174 lysis protein; Provisional Back     alignment and domain information
>PRK02119 hypothetical protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length Back     alignment and domain information
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated Back     alignment and domain information
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 6e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.9 bits (118), Expect = 5e-07
 Identities = 51/298 (17%), Positives = 98/298 (32%), Gaps = 74/298 (24%)

Query: 30  LCMVKKPLTTSFFNGGVGALK------VTRLR---IAPSSRSHCYRQGGGALNTRMNLFD 80
           L   ++ +   F       L+      ++ ++     PS  +  Y      +  R    D
Sbjct: 71  LLSKQEEMVQKFVEE---VLRINYKFLMSPIKTEQRQPSMMTRMY------IEQR----D 117

Query: 81  RLARVVKSYANAILSSFEDPEKILEQAVLEMNDD----LVKMRQATAQVLASQ--KRLEN 134
           RL    + +A   +S  + P   L QA+LE+       +  +  +    +A       + 
Sbjct: 118 RLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 135 KCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194
           +CK   +    W       L     +     L+           L  Q+D      ++  
Sbjct: 177 QCKMDFKIF--W-------LNLKNCNSPETVLE-------MLQKLLYQIDPNWTSRSDHS 220

Query: 195 SNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVL--T 252
           SN +L   +I   +++   L    +  +    V   L NV  + A +AF  +  K+L  T
Sbjct: 221 SNIKL---RIHSIQAELRRLLKS-KPYENCLLV---LLNVQNAKAWNAFN-LSCKILLTT 272

Query: 253 MESQ-ADSLNQ--------------LTTDDLEGKFALLETSSVDDDLANLKKELSGSS 295
              Q  D L+               LT D+++            D    L +E+  ++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTN 326
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 97.14
4abm_A79 Charged multivesicular BODY protein 4B; cell cycle 97.14
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.53
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 96.28
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.83
2gd5_A179 Charged multivesicular BODY protein 3; CHMP3, ESCR 95.65
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.58
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.26
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 94.13
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 93.51
3frt_A218 Charged multivesicular BODY protein 3; ESCRT, ESCR 93.46
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 93.41
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.14
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 92.47
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 92.17
3bas_A89 Myosin heavy chain, striated muscle/general contro 90.95
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 90.76
3ajw_A150 Flagellar FLIJ protein; flagellum, type III secret 90.76
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 89.01
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 88.14
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 87.92
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 87.66
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 87.28
2v4h_A110 NF-kappa-B essential modulator; transcription, met 86.81
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 86.58
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 86.15
1m1j_B 464 Fibrinogen beta chain; coiled coils, disulfide rin 86.03
4fm3_A98 Uncharacterized hypothetical protein; PF14346 fami 85.37
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 85.11
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 85.1
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 85.0
1m1j_C 409 Fibrinogen gamma chain; coiled coils, disulfide ri 84.98
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 83.84
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 83.15
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 82.87
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 82.87
3iox_A 497 AGI/II, PA; alpha helix, PPII helix, supersandwich 82.47
1deq_A 390 Fibrinogen (alpha chain); coiled-coil, blood clott 81.42
3efg_A78 Protein SLYX homolog; xanthomonas campestris PV. c 80.59
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 80.22
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
Probab=97.14  E-value=0.035  Score=53.63  Aligned_cols=121  Identities=16%  Similarity=0.146  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022272           78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG  157 (300)
Q Consensus        78 if~Rl~~li~a~~n~~ld~~EDP~~mLeQ~Ireme~~l~kar~alA~v~A~~k~le~k~~~~~~~i~~~e~rA~~AL~~G  157 (300)
                      -+..+.+++...+..++..-.||+..|+....++++.|.+.+... +..--...++++++++++...+.+.+|-.|=.  
T Consensus       349 ~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  425 (471)
T 3mq9_A          349 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANH--  425 (471)
T ss_dssp             THHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch--
Confidence            356778888888888888888999999999999999998876654 67778888999999999999999999887622  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022272          158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL  214 (300)
Q Consensus       158 ~EdLAreAL~rk~~~e~~~~~le~ql~~~~~~v~~L~~~l~~Le~ki~e~k~k~~~L  214 (300)
                            -...-..+++..+.       +....+++|+..+.++..+|++.+.+.+.+
T Consensus       426 ------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (471)
T 3mq9_A          426 ------TVMALMASLDAEKA-------QGQKKVEELEGEITTLNHKLQDASAEVERL  469 (471)
T ss_dssp             ------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  12222223333333       333445555555555555555555555444
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Back     alignment and structure
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Back     alignment and structure
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00