Citrus Sinensis ID: 022295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL
Secondary Structure (PSIPRED)
ccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHcHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHcccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHcccEEEEcccccccHHHHHHHccEEEEEccccccccccccccccEEEEcccccccccccccccEEEcccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHcccHHHEcccccHHHHHHHHccccccccccHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHcccEEEEEccccccHHHHHccccEEEEcccccccEcHHHcccccEEEEcccEEEEcccccccEEEEccEcHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maapsdqkatiiDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGiksfdidlpeqvSEAELISKVHelnvmpdvhgilvqlplpkhineekvlgeislekdvdgfhplnigklamkgrdplflpctpkgcLELLkrsgvtikgkrAVVVGRSNIVGLPVSLLLLKADATVTIVhshttdpesivREADIVIAAAGQAMMikgswikpgaavidvgtnavddstkksgyrlvgdvdfheackvagcvtpvpggvgpMTVAMLLRNTLDGAKRVIEL
Flexible Loop (DISEMBL)
maapsdqkatiidgkavaQTIRSEIAEEVRLLsekygkvpgLAVVIVggrkdsqsyVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKrsgvtikgkravvvgrsniVGLPVSLLLLKADATVTIVHshttdpesivrEADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTldgakrviel
Low Complexity Region (SEG)
MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKvagcvtpvpggvgpmtvamLLRNTLDGAKRVIEL
Disordered region (IsUnstruct)
**********IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLD********
Disordered Region (DISOPRED)
******Q****IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL
Disordered Region (DISEMBL)
*********TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL
Disordered Region (DISPRO)
******QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
A0LE04	285	Bifunctional protein FolD	yes	no	0.933	0.978	0.564	1e-82
P07245	946	C-1-tetrahydrofolate synt	yes	no	0.963	0.304	0.525	6e-82
A5GAM5	280	Bifunctional protein FolD	yes	no	0.929	0.992	0.571	3e-81
O96553	968	C-1-tetrahydrofolate synt	yes	no	0.966	0.298	0.542	6e-81
Q39WH4	285	Bifunctional protein FolD	yes	no	0.939	0.985	0.562	4e-80
Q8Y7C5	284	Bifunctional protein FolD	yes	no	0.936	0.985	0.543	4e-80
C1L2R6	284	Bifunctional protein FolD	yes	no	0.936	0.985	0.543	6e-80
B8DFW8	284	Bifunctional protein FolD	yes	no	0.936	0.985	0.543	8e-80
Q92BZ4	284	Bifunctional protein FolD	yes	no	0.936	0.985	0.543	1e-79
Q71ZW2	284	Bifunctional protein FolD	yes	no	0.936	0.985	0.543	2e-79

>sp|A0LE04|FOLD_MAGSM Bifunctional protein FolD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1

 Score =  306 bits (784), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/287 (56%), Positives = 199/287 (69%), Gaps = 8/287 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A +IDGKA+AQ++R E+  EV  L   +   PGLAVV+VG    SQ YV  K++AC   G
Sbjct: 2   AHVIDGKAIAQSVREELRMEVERLKLNHQLTPGLAVVLVGADPASQVYVRNKKRACETAG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I SF  +L    S+AEL++ + +LN    VHGILVQLPLPKHI+E+KVL  IS  KD DG
Sbjct: 62  IASFSHELAATTSQAELLALIEQLNQDDAVHGILVQLPLPKHIDEQKVLEAISPSKDADG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP N+G+L     DP F PCTP G +E+LK SGV  KGK AVV+GRSNIVG PV+L+LL
Sbjct: 122 FHPYNVGRLVTG--DPTFQPCTPWGVMEMLKVSGVDPKGKHAVVIGRSNIVGKPVALMLL 179

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
            A ATVTI HS T D    V+ ADIV+AA G+A M+ GSWIK GA VIDVG N  +D   
Sbjct: 180 AAHATVTICHSRTPDLAETVKRADIVVAAVGRANMVPGSWIKKGAVVIDVGINRGEDG-- 237

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               +L GDVD+    + A  +TPVPGGVGPMT+AMLL+NT++GAKR
Sbjct: 238 ----KLCGDVDYASCFEHASAITPVPGGVGPMTIAMLLKNTVEGAKR 280

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.
Magnetococcus sp. (strain MC-1) (taxid: 156889)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 9

>sp|P07245|C1TC_YEAST C-1-tetrahydrofolate synthase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADE3 PE=1 SV=1

 Score =  304 bits (778), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 156/297 (52%), Positives = 200/297 (67%), Gaps = 9/297 (3%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
           ++DGKA AQ  RS IA E++ +     G  P LA++ VG R DS +YV MKRKA  E GI
Sbjct: 5   VLDGKACAQQFRSNIANEIKSIQGHVPGFAPNLAIIQVGNRPDSATYVRMKRKAAEEAGI 64

Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
            +  I L E  +E E++  V +LN  P  HGI+VQLPLP H++E+++   +  EKDVDGF
Sbjct: 65  VANFIHLDESATEFEVLRYVDQLNEDPHTHGIIVQLPLPAHLDEDRITSRVLAEKDVDGF 124

Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
            P NIG+L  K   P FLPCTPKG +ELL ++ VTI+G R+VV+GRS+IVG PV+ LL  
Sbjct: 125 GPTNIGELNKKNGHPFFLPCTPKGIIELLHKANVTIEGSRSVVIGRSDIVGSPVAELLKS 184

Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKP--------GAAVIDVGTN 241
            ++TVTI HS T D  S + +ADIV+ A GQ   +KG W KP           VIDVGTN
Sbjct: 185 LNSTVTITHSKTRDIASYLHDADIVVVAIGQPEFVKGEWFKPRDGTSSDKKTVVIDVGTN 244

Query: 242 AVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
            V D +KKSG++ VGDV+F+EA K    +TPVPGGVGPMTVAML++NTL  AKR +E
Sbjct: 245 YVADPSKKSGFKCVGDVEFNEAIKYVHLITPVPGGVGPMTVAMLMQNTLIAAKRQME 301

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|A5GAM5|FOLD_GEOUR Bifunctional protein FolD OS=Geobacter uraniireducens (strain Rf4) GN=folD PE=3 SV=1

 Score =  301 bits (771), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 164/287 (57%), Positives = 199/287 (69%), Gaps = 9/287 (3%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A IIDGKA+A  IR EI  EV  L+ K G  PGLAVV+VG    S+ YVSMK KAC +VG
Sbjct: 2   AKIIDGKAIAAKIRGEITAEVAKLASK-GVTPGLAVVLVGEDPASKVYVSMKEKACKDVG 60

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I S +  LP   SEA+L+  +H+LN  P +HGIL+QLPLPK I+ EKVL  IS EKD DG
Sbjct: 61  IFSDEYKLPVDTSEADLLLLIHKLNSDPKIHGILIQLPLPKQIDTEKVLEAISPEKDADG 120

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP N+G+L +    PLF PCTP G + +LK +GV + GK  VVVGRSNIVG PV+ + L
Sbjct: 121 FHPYNVGRLVIG--KPLFQPCTPYGVMVMLKEAGVELAGKEVVVVGRSNIVGKPVAFMCL 178

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
           + +ATVT+ HS T D  + V  AD+VIAA GQ  MIKG+WIK GA VIDVG N V +   
Sbjct: 179 QQNATVTLCHSKTRDLAAKVGMADVVIAAVGQPEMIKGAWIKEGAVVIDVGVNRVGEK-- 236

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               +LVGDV+F  A + A  +TPVPGGVGPMT+ MLL NTL+ AKR
Sbjct: 237 ----KLVGDVEFDAAAERASAITPVPGGVGPMTITMLLYNTLEAAKR 279

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Geobacter uraniireducens (strain Rf4) (taxid: 351605)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|O96553|C1TC_DROME C-1-tetrahydrofolate synthase, cytoplasmic OS=Drosophila melanogaster GN=pug PE=1 SV=4

 Score =  300 bits (769), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 159/293 (54%), Positives = 206/293 (70%), Gaps = 4/293 (1%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGK-VPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
           A II G AVA++IR E+  EV  +S++    VPGL +V VGGR+DS  Y+ MK KA  E+
Sbjct: 38  AKIISGTAVAKSIREELRNEVTAMSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAATEI 97

Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP--KHINEEKVLGEISLEKD 125
           GI +  + LP  ++E EL+ K+++LN  P VHGI+VQ+PL     I+  ++   +S EKD
Sbjct: 98  GIDAAHVQLPRSITEVELLDKINDLNEDPRVHGIIVQMPLDCDTPIDSHRITDAVSPEKD 157

Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL 185
           VDG H +N G+LA+ G    FLPCTP GCLEL++RSGV I G RAVV+GRS IVG P + 
Sbjct: 158 VDGLHTVNEGRLAI-GDLGGFLPCTPWGCLELIRRSGVEIAGARAVVLGRSKIVGTPAAE 216

Query: 186 LLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
           LL  A+ATVT+ HS T + E I R ADI++   G A M+KGSWIKPGA VID G N   D
Sbjct: 217 LLKWANATVTVCHSKTRNLEEITRSADILVVGIGVAEMVKGSWIKPGAVVIDCGINVKPD 276

Query: 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
           ++K SG +LVGDVD+ EA +VAG +TPVPGGVGPMTVAML++NT+  A R +E
Sbjct: 277 ASKASGSKLVGDVDYAEALQVAGHLTPVPGGVGPMTVAMLMKNTVRSAARFLE 329

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|Q39WH4|FOLD2_GEOMG Bifunctional protein FolD 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=folD2 PE=3 SV=1

 Score =  298 bits (763), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 163/290 (56%), Positives = 201/290 (69%), Gaps = 9/290 (3%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           +TIIDGKA+A  +R+EIA EV++L EK G +PGLA V+VG    S+ YV MK  AC E+G
Sbjct: 2   STIIDGKAIAAKLRAEIATEVKILKEK-GIIPGLATVLVGEDPASEVYVRMKGNACQELG 60

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           + S    LP   +EAEL++ V  LN  P +HGILVQLPLPK IN + +L  IS  KDVDG
Sbjct: 61  MHSVKHTLPATTTEAELLALVARLNSDPTIHGILVQLPLPKQINSDTILEAISPVKDVDG 120

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP N+G+L M G+ P F PCTP G + +L+ +GV + GK  VVVGRSNIVG PV+L+ L
Sbjct: 121 FHPYNVGRL-MVGK-PTFQPCTPYGVMVMLREAGVDLAGKEVVVVGRSNIVGKPVALMCL 178

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
           +  ATVTI HS T D  S V+EAD+VIAA G   MIKG WIK GA VIDVG N V +   
Sbjct: 179 QQHATVTICHSKTRDLPSKVKEADVVIAAVGVPEMIKGEWIKEGAVVIDVGVNRVGEK-- 236

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
               +LVGDV+F  A + A  +TPVPGGVGPMT+ MLL NTL+ AK+  E
Sbjct: 237 ----KLVGDVEFAAASQRASAITPVPGGVGPMTITMLLYNTLEAAKKTGE 282

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|Q8Y7C5|FOLD_LISMO Bifunctional protein FolD OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=folD PE=3 SV=1

 Score =  298 bits (762), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 157/289 (54%), Positives = 205/289 (70%), Gaps = 9/289 (3%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+K
Sbjct: 4   IIDGKKLAKEIQEKVTREVAELV-KEGKQPGLAVVLVGDNQASRTYVRNKQKRTEEAGMK 62

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFH
Sbjct: 63  SVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISFDKDVDGFH 122

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
           P+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  
Sbjct: 123 PVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNE 180

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
           +ATVTI HS T D   + +EADI++ A G A  +K  +IKPGA VIDVG +      +  
Sbjct: 181 NATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMD------RDE 234

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
             +L GDVDF +  + AG +TPVPGGVGPMT+ MLL NTL  AKR+ ++
Sbjct: 235 NNKLCGDVDFDDVVQEAGFITPVPGGVGPMTITMLLANTLKAAKRIWKM 283

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|C1L2R6|FOLD_LISMC Bifunctional protein FolD OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=folD PE=3 SV=1

 Score =  297 bits (761), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 157/289 (54%), Positives = 205/289 (70%), Gaps = 9/289 (3%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+K
Sbjct: 4   IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMK 62

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFH
Sbjct: 63  SVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFH 122

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
           P+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  
Sbjct: 123 PVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNE 180

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
           +ATVTI HS T D   + +EADI++ A G A  +K  +IKPGA VIDVG +      +  
Sbjct: 181 NATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAVVIDVGMD------RDE 234

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
             +L GDVDF +  + AG +TPVPGGVGPMT+ MLL NTL  AKR+ ++
Sbjct: 235 NNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWKM 283

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|B8DFW8|FOLD_LISMH Bifunctional protein FolD OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=folD PE=3 SV=1

 Score =  297 bits (760), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 157/289 (54%), Positives = 205/289 (70%), Gaps = 9/289 (3%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+K
Sbjct: 4   IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMK 62

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFH
Sbjct: 63  SVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFH 122

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
           P+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  
Sbjct: 123 PVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNE 180

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
           +ATVTI HS T D   + +EADI++ A G A  +K  +IKPGA VIDVG +      +  
Sbjct: 181 NATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMD------RDE 234

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
             +L GDVDF +  + AG +TPVPGGVGPMT+ MLL NTL  AKR+ ++
Sbjct: 235 NNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWKM 283

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4a (strain HCC23) (taxid: 552536)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|Q92BZ4|FOLD_LISIN Bifunctional protein FolD OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=folD PE=3 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/289 (54%), Positives = 204/289 (70%), Gaps = 9/289 (3%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+K
Sbjct: 4   IIDGKKLAKEIQEKVTSEVAELV-KQGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMK 62

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S  I+LPE V+E +L+  V ELN    +HGILVQLPLPKHI+EEKV+  IS +KDVDGFH
Sbjct: 63  SVLIELPETVTEEKLLKVVEELNEDNTIHGILVQLPLPKHISEEKVIDAISFDKDVDGFH 122

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
           P+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  
Sbjct: 123 PVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNE 180

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
           +ATVTI HS T D   + +EADI++ A G A  +K  +IKPGA VIDVG +      +  
Sbjct: 181 NATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKEYIKPGAIVIDVGMD------RDE 234

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
             +L GDVDF +  + AG +TPVPGGVGPMT+ MLL NTL  AKR+ ++
Sbjct: 235 NNKLCGDVDFDDVKEQAGFITPVPGGVGPMTITMLLANTLKAAKRIWKM 283

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|Q71ZW2|FOLD_LISMF Bifunctional protein FolD OS=Listeria monocytogenes serotype 4b (strain F2365) GN=folD PE=3 SV=1

 Score =  296 bits (757), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/289 (54%), Positives = 205/289 (70%), Gaps = 9/289 (3%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+K
Sbjct: 4   IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMK 62

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFH
Sbjct: 63  SVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFH 122

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
           P+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  
Sbjct: 123 PVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLIE 180

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
           +ATVTI HS T D   + +EADI++ A G A  +K  +IKPGA VIDVG +      +  
Sbjct: 181 NATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAVVIDVGMD------RDE 234

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
             +L GDVDF +  + AG +TPVPGGVGPMT+ MLL NTL  AKR+ ++
Sbjct: 235 NNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWKM 283

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
359479954	307	PREDICTED: c-1-tetrahydrofolate synthase	0.996	0.970	0.889	1e-152
255582158	299	methylenetetrahydrofolate dehydrogenase,	0.986	0.986	0.891	1e-149
449469104	299	PREDICTED: c-1-tetrahydrofolate synthase	0.996	0.996	0.862	1e-148
118488628	299	unknown [Populus trichocarpa]	0.993	0.993	0.865	1e-148
358248138	294	uncharacterized protein LOC100783652 [Gl	0.969	0.986	0.879	1e-146
356572720	294	PREDICTED: c-1-tetrahydrofolate synthase	0.969	0.986	0.879	1e-145
4103987	294	5,10-methylenetetrahydrofolate dehydroge	0.969	0.986	0.868	1e-144
255646414	294	unknown [Glycine max]	0.969	0.986	0.872	1e-144
21553669	299	5,10-methylenetetrahydrofolate dehydroge	0.993	0.993	0.851	1e-142
15230449	299	amino acid dehydrogenase family protein	0.993	0.993	0.851	1e-142

>gi|359479954|ref|XP_002263128.2| PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic [Vitis vinifera]

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/298 (88%), Positives = 283/298 (94%)

Query: 1   MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
           MA+P   KA+IIDGKA+AQ IRSEIAEEVR LSEKYGKVPGLAVVIVG RKDSQSYVSMK
Sbjct: 1   MASPDGHKASIIDGKAIAQAIRSEIAEEVRHLSEKYGKVPGLAVVIVGNRKDSQSYVSMK 60

Query: 61  RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
           RKACAEVGIKSFD+DLPEQV E+ELI KVHELN +PDVHGILVQLPLPKHINEEKVL EI
Sbjct: 61  RKACAEVGIKSFDVDLPEQVLESELIGKVHELNALPDVHGILVQLPLPKHINEEKVLSEI 120

Query: 121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVG 180
           SLEKDVDGFHPLNIGKLAMKGR+PLFLPCTPKGCLELL RSG+++KGK+AVVVGRSNIVG
Sbjct: 121 SLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGISVKGKKAVVVGRSNIVG 180

Query: 181 LPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240
           LPV+LLLLKADATVT+VHSHT DPESI+R+ADIVIAAAGQAMMIKGSWIKPGAAVIDVGT
Sbjct: 181 LPVALLLLKADATVTVVHSHTQDPESIIRDADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240

Query: 241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
           NAV+D +KKSGYRLVGDVDF EACKVAG VTPVPGGVGPMTVAMLL+NTLDGAKRVIE
Sbjct: 241 NAVNDPSKKSGYRLVGDVDFQEACKVAGWVTPVPGGVGPMTVAMLLKNTLDGAKRVIE 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582158|ref|XP_002531873.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis] gi|223528481|gb|EEF30510.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/295 (89%), Positives = 278/295 (94%)

Query: 1   MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
           MAAPSD KATIIDGKA+AQTIRSEIA+EVR LSEKYGKVPGLAVVIVG RKDSQSYVSMK
Sbjct: 1   MAAPSDHKATIIDGKAIAQTIRSEIADEVRQLSEKYGKVPGLAVVIVGNRKDSQSYVSMK 60

Query: 61  RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
           RKACAEVGIKSFDI+LPEQVSEAELISKVHELN   DVHGILVQLPLPKHINEEKVL EI
Sbjct: 61  RKACAEVGIKSFDINLPEQVSEAELISKVHELNANTDVHGILVQLPLPKHINEEKVLSEI 120

Query: 121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVG 180
           S+EKDVDGFHPLNIGKLAMKGR+PLFLPCTPKGCLELL RSG++IKGK+AVVVGRSNIVG
Sbjct: 121 SIEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGISIKGKKAVVVGRSNIVG 180

Query: 181 LPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240
           LPVSLLLLKADATV+IVHS T DPE I+ EADI+IAAAGQ MMIKGSWIKPGAAVIDVGT
Sbjct: 181 LPVSLLLLKADATVSIVHSRTEDPERIICEADIIIAAAGQPMMIKGSWIKPGAAVIDVGT 240

Query: 241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
           NAVDD +KKSGYRLVGDVD+ EAC VAG +TPVPGGVGPMTVAMLL+NTLDGAKR
Sbjct: 241 NAVDDPSKKSGYRLVGDVDYKEACNVAGWITPVPGGVGPMTVAMLLKNTLDGAKR 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469104|ref|XP_004152261.1| PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic-like [Cucumis sativus] gi|449484305|ref|XP_004156845.1| PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic-like [Cucumis sativus]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/298 (86%), Positives = 278/298 (93%)

Query: 1   MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
           MA+ SD KATIIDGK +AQT+RSEI EEV  LS+KYGK+PGLAVVIVG RKDS +YV+MK
Sbjct: 1   MASESDHKATIIDGKKIAQTVRSEITEEVNKLSQKYGKIPGLAVVIVGNRKDSLTYVNMK 60

Query: 61  RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
           RKAC EVGIKSF+IDLPEQVSEAELISKVHELN  P+VHGILVQLPLP HINEEKVL EI
Sbjct: 61  RKACLEVGIKSFEIDLPEQVSEAELISKVHELNANPEVHGILVQLPLPNHINEEKVLSEI 120

Query: 121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVG 180
           S+EKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGC+ELL RSG++I+GK+AVV+GRSNIVG
Sbjct: 121 SIEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCIELLSRSGISIRGKKAVVMGRSNIVG 180

Query: 181 LPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240
           LPVSLLLLKADATVTIVHS + DPES++READI+IAAAGQA MIKGSWIKPGAAVIDVGT
Sbjct: 181 LPVSLLLLKADATVTIVHSRSVDPESVIREADIIIAAAGQAQMIKGSWIKPGAAVIDVGT 240

Query: 241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
           NAVDD TKKSGYRLVGDVDF EACKVAG +TPVPGGVGPMTVAMLLRNTLDGAKRVIE
Sbjct: 241 NAVDDPTKKSGYRLVGDVDFQEACKVAGWITPVPGGVGPMTVAMLLRNTLDGAKRVIE 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488628|gb|ABK96126.1| unknown [Populus trichocarpa]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/297 (86%), Positives = 278/297 (93%)

Query: 1   MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
           MA+ S+ KAT+IDGK +AQTIRSEIAEEVR LSEKYGKVPGLAVVIVG RKDSQSYV MK
Sbjct: 1   MASQSEHKATVIDGKLIAQTIRSEIAEEVRQLSEKYGKVPGLAVVIVGNRKDSQSYVGMK 60

Query: 61  RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
           RKACAEVGI+SFD+DLPEQ+SEAEL+SKVHELN  PDVHGILVQLPLPKHINEEKVL EI
Sbjct: 61  RKACAEVGIQSFDMDLPEQISEAELVSKVHELNANPDVHGILVQLPLPKHINEEKVLSEI 120

Query: 121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVG 180
           SL KDVDGFHPLNIGKLAMK R+PLF PCTPKGCLELL RSGV+IKGKRAVVVGRSNIVG
Sbjct: 121 SLAKDVDGFHPLNIGKLAMKDREPLFQPCTPKGCLELLHRSGVSIKGKRAVVVGRSNIVG 180

Query: 181 LPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240
           LPVSLLLLKADATVT+VHS + D ESI+READI+IAAAGQ MMIKGSWIKPGAAVIDVGT
Sbjct: 181 LPVSLLLLKADATVTVVHSRSNDQESIIREADIIIAAAGQPMMIKGSWIKPGAAVIDVGT 240

Query: 241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
           NAVDD ++K+GYRLVGDVDF EACK+AGC+TPVPGGVGPMTVAMLL+NTL+GAKRVI
Sbjct: 241 NAVDDPSRKTGYRLVGDVDFKEACKIAGCITPVPGGVGPMTVAMLLKNTLEGAKRVI 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248138|ref|NP_001239823.1| uncharacterized protein LOC100783652 [Glycine max] gi|255647576|gb|ACU24251.1| unknown [Glycine max]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/290 (87%), Positives = 273/290 (94%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           AT+IDGKAVAQTIRSEIA+EVR LS+KYGKVPGLAVVIVG RKDSQSYV MKRKACAE+G
Sbjct: 2   ATVIDGKAVAQTIRSEIADEVRQLSQKYGKVPGLAVVIVGNRKDSQSYVGMKRKACAELG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           IKSFD+DLPEQVS+AELI +VH+LN  PDVHGILVQLPLPKHINEE+VL EISLEKDVDG
Sbjct: 62  IKSFDVDLPEQVSQAELIKQVHQLNANPDVHGILVQLPLPKHINEEEVLTEISLEKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHPLNIGKLAMKGRDPLFLPCTPK C+ELL+RSGV+IKGK+AVVVGRSNIVGLP SLLLL
Sbjct: 122 FHPLNIGKLAMKGRDPLFLPCTPKACIELLQRSGVSIKGKKAVVVGRSNIVGLPASLLLL 181

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
           KADATVTI+HSHT+ PESI+READIVIAAAGQ MMIKGSWIKPGAAVIDVGTNAVDD TK
Sbjct: 182 KADATVTIIHSHTSQPESIIREADIVIAAAGQPMMIKGSWIKPGAAVIDVGTNAVDDPTK 241

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
           KSGYRLVGDVDF EA KVAG +TPVPGGVGPMTV MLL+NTLDGAKR IE
Sbjct: 242 KSGYRLVGDVDFGEASKVAGWITPVPGGVGPMTVTMLLKNTLDGAKRYIE 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572720|ref|XP_003554514.1| PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic-like [Glycine max]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/290 (87%), Positives = 273/290 (94%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           AT+IDGKAVAQ IRSEIA+EVRLLS+KYGKVPGLAVVIVG RKDSQSYV MKRKACAE+G
Sbjct: 2   ATVIDGKAVAQIIRSEIADEVRLLSQKYGKVPGLAVVIVGNRKDSQSYVGMKRKACAELG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           IKSFD+DLPEQVS+AELI +VHELNV PDVHGILVQLPLPKHINEEKVL EISLEKDVDG
Sbjct: 62  IKSFDVDLPEQVSQAELIKQVHELNVNPDVHGILVQLPLPKHINEEKVLTEISLEKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHPLNIGKLAMKGRDPLFLPCTPK C+ELL+RSGV+IKGK+AVVVGRSNIVGLP SLLLL
Sbjct: 122 FHPLNIGKLAMKGRDPLFLPCTPKACIELLQRSGVSIKGKKAVVVGRSNIVGLPASLLLL 181

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
           KADATVTIVHSHT+ PESI+ EADIVIAAAGQ MMIKG+WIKPGAAVIDVGTNAVDD TK
Sbjct: 182 KADATVTIVHSHTSQPESIIHEADIVIAAAGQPMMIKGNWIKPGAAVIDVGTNAVDDPTK 241

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
           KSGYRLVGDVDF EA KVAG +TPVPGGVGPMTV MLL+NT++GAKR IE
Sbjct: 242 KSGYRLVGDVDFEEASKVAGWITPVPGGVGPMTVTMLLKNTVEGAKRYIE 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4103987|gb|AAD01907.1| 5,10-methylenetetrahydrofolate dehydrogenase-5,10-methenyltetrahydrofolate cyclohydrolase [Pisum sativum] gi|6002383|emb|CAB56756.1| 5,10-methylenetetrahydrofolate dehydrogenase: 5,10-methenyltetrahydrofolate cyclohydrolase [Pisum sativum]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/290 (86%), Positives = 269/290 (92%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           AT+IDGKAVAQTIRSEIA+EVRLLS+KYGKVPGLAVVIVG RKDSQSYV MKRKACAE+G
Sbjct: 2   ATVIDGKAVAQTIRSEIADEVRLLSQKYGKVPGLAVVIVGNRKDSQSYVGMKRKACAELG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           IKSFDIDLPE  SEAE+I  VHELN  PDVHGILVQLPLPKH+NEEKVL EIS+ KDVDG
Sbjct: 62  IKSFDIDLPEDASEAEIIKNVHELNANPDVHGILVQLPLPKHVNEEKVLTEISISKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHPLNIGKLAMKGRDPLFLPCTPK CLELL RSGV+IKGK+AVVVGRSNIVGLP SLLLL
Sbjct: 122 FHPLNIGKLAMKGRDPLFLPCTPKACLELLSRSGVSIKGKKAVVVGRSNIVGLPASLLLL 181

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
           KADATVTIVHSHT+ PE+I+READIVIAAAGQA MIKGSWIKPGAAVIDVGTN+VDD T+
Sbjct: 182 KADATVTIVHSHTSQPETIIREADIVIAAAGQAKMIKGSWIKPGAAVIDVGTNSVDDPTR 241

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
           KSGYRLVGDVDF EA KVAG +TPVPGGVGPMTV MLL+NTL+GAKR IE
Sbjct: 242 KSGYRLVGDVDFEEASKVAGWITPVPGGVGPMTVTMLLKNTLEGAKRTIE 291

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646414|gb|ACU23686.1| unknown [Glycine max]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/290 (87%), Positives = 271/290 (93%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           AT+IDGKAVAQ IRSEIA+EVRLLS+KYGKVPGLAVVIVG RKDSQSY  MKRKACAE+G
Sbjct: 2   ATVIDGKAVAQIIRSEIADEVRLLSQKYGKVPGLAVVIVGNRKDSQSYAGMKRKACAELG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           IKSFD+DLPEQVS+AELI +VHELNV PDVHGILVQLPLPKHINEEKVL EISLEKDVDG
Sbjct: 62  IKSFDVDLPEQVSQAELIKQVHELNVNPDVHGILVQLPLPKHINEEKVLTEISLEKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHPLNIGKLAMKGRDPLFLPCTPK C+ELL+RSGV+IKGK+AVVVGRSNIVGLP SLLLL
Sbjct: 122 FHPLNIGKLAMKGRDPLFLPCTPKACIELLQRSGVSIKGKKAVVVGRSNIVGLPASLLLL 181

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
           KADATVTIVHSHT+ PESI+ EADIVIAAAGQ MMIKG+WIKPGAAVIDVGTNAVDD TK
Sbjct: 182 KADATVTIVHSHTSQPESIIHEADIVIAAAGQPMMIKGNWIKPGAAVIDVGTNAVDDPTK 241

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
           KSGYRLVGDVDF EA KVAG +TPVPGGVGPMTV  LL+NT++GAKR IE
Sbjct: 242 KSGYRLVGDVDFEEASKVAGWITPVPGGVGPMTVTTLLKNTVEGAKRYIE 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553669|gb|AAM62762.1| 5,10-methylenetetrahydrofolate dehydrogenase:5,10-methenyltetrahydrofolate cyclohydrolase, putative [Arabidopsis thaliana]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/297 (85%), Positives = 272/297 (91%)

Query: 1   MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
           MA+ SD  A IIDGKA+A TIRSEIAEEVR LSEK+GKVPGLAVVIVG RKDSQ+YV+ K
Sbjct: 1   MASSSDHTAKIIDGKAIAHTIRSEIAEEVRGLSEKHGKVPGLAVVIVGSRKDSQTYVNTK 60

Query: 61  RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
           RKACAEVGIKSFD+ LPE+VSEA+LISKVHELN  PDVHGILVQLPLPKHINEE +LG I
Sbjct: 61  RKACAEVGIKSFDVGLPEEVSEADLISKVHELNSNPDVHGILVQLPLPKHINEENILGAI 120

Query: 121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVG 180
           S++KDVDGFHPLNIGKLAMKGR+PLFLPCTPKGCLELL RSGV IKG+RAVVVGRSNIVG
Sbjct: 121 SIDKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLARSGVKIKGQRAVVVGRSNIVG 180

Query: 181 LPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240
           LPVSLLLLKADATVT VHSHT DPE+I+READIVIAA GQA MIKG+WIKPGAAVIDVGT
Sbjct: 181 LPVSLLLLKADATVTTVHSHTKDPEAIIREADIVIAACGQAHMIKGNWIKPGAAVIDVGT 240

Query: 241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
           NAV D +KKSGYRLVGDVDF EA KVAG +TPVPGGVGPMTVAMLLRNT+DGAKRV 
Sbjct: 241 NAVSDPSKKSGYRLVGDVDFAEASKVAGFITPVPGGVGPMTVAMLLRNTVDGAKRVF 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230449|ref|NP_187837.1| amino acid dehydrogenase family protein [Arabidopsis thaliana] gi|12322041|gb|AAG51064.1|AC069472_4 5,10-methylenetetrahydrofolate dehydrogenase:5,10-methenyltetrahydrofolate cyclohydrolase, putative; 44272-46007 [Arabidopsis thaliana] gi|15795150|dbj|BAB03138.1| 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase [Arabidopsis thaliana] gi|28416655|gb|AAO42858.1| At3g12290 [Arabidopsis thaliana] gi|110743301|dbj|BAE99540.1| hypothetical protein [Arabidopsis thaliana] gi|332641660|gb|AEE75181.1| amino acid dehydrogenase family protein [Arabidopsis thaliana]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/297 (85%), Positives = 272/297 (91%)

Query: 1   MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
           MA+ SD  A IIDGKA+A TIRSEIAEEVR LSEK+GKVPGLAVVIVG RKDSQ+YV+ K
Sbjct: 1   MASSSDHTAKIIDGKAIAHTIRSEIAEEVRGLSEKHGKVPGLAVVIVGSRKDSQTYVNTK 60

Query: 61  RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
           RKACAEVGIKSFD+ LPE+VSEA+LISKVHELN  PDVHGILVQLPLPKHINEE +LG I
Sbjct: 61  RKACAEVGIKSFDVGLPEEVSEADLISKVHELNSNPDVHGILVQLPLPKHINEEHILGAI 120

Query: 121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVG 180
           S++KDVDGFHPLNIGKLAMKGR+PLFLPCTPKGCLELL RSGV IKG+RAVVVGRSNIVG
Sbjct: 121 SIDKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLARSGVKIKGQRAVVVGRSNIVG 180

Query: 181 LPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240
           LPVSLLLLKADATVT VHSHT DPE+I+READIVIAA GQA MIKG+WIKPGAAVIDVGT
Sbjct: 181 LPVSLLLLKADATVTTVHSHTKDPEAIIREADIVIAACGQAHMIKGNWIKPGAAVIDVGT 240

Query: 241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
           NAV D +KKSGYRLVGDVDF EA KVAG +TPVPGGVGPMTVAMLLRNT+DGAKRV 
Sbjct: 241 NAVSDPSKKSGYRLVGDVDFAEASKVAGFITPVPGGVGPMTVAMLLRNTVDGAKRVF 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2082254	299	AT3G12290 [Arabidopsis thalian	0.989	0.989	0.797	2.3e-119
TAIR|locus:2127113	360	EMB3127 "EMBRYO DEFECTIVE 3127	0.976	0.811	0.575	3.7e-87
TAIR|locus:2064143	352	AT2G38660 [Arabidopsis thalian	0.976	0.829	0.565	5.6e-84
DICTYBASE|DDB_G0283121	292	DDB_G0283121 "methenyl tetrahy	0.933	0.955	0.515	6.1e-71
SGD|S000003436	946	ADE3 "Cytoplasmic trifunctiona	0.963	0.304	0.481	1.4e-65
CGD|CAL0000766	946	MIS11 [Candida albicans (taxid	0.959	0.303	0.475	5.8e-65
UNIPROTKB|Q59SM8	946	MIS11 "Likely C1-tetrahydrofol	0.959	0.303	0.475	5.8e-65
FB|FBgn0020385	968	pug "pugilist" [Drosophila mel	0.966	0.298	0.484	6.4e-65
ASPGD|ASPL0000036964	1031	AN2998 [Emericella nidulans (t	0.959	0.278	0.479	2.7e-64
TIGR_CMR|GSU_0862	285	GSU_0862 "folD bifunctional pr	0.926	0.971	0.503	1.6e-63

TAIR|locus:2082254 AT3G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 1175 (418.7 bits), Expect = 2.3e-119, P = 2.3e-119
 Identities = 236/296 (79%), Positives = 254/296 (85%)

Query:     1 MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
             MA+ SD  A IIDGKA+A TIRSEIAEEVR LSEK+GKVPGLAVVIVG RKDSQ+YV+ K
Sbjct:     1 MASSSDHTAKIIDGKAIAHTIRSEIAEEVRGLSEKHGKVPGLAVVIVGSRKDSQTYVNTK 60

Query:    61 RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
             RKACAEVGIKSFD+ LPE+VSEA+LISKVHELN  PDVHGILVQLPLPKHINEE +LG I
Sbjct:    61 RKACAEVGIKSFDVGLPEEVSEADLISKVHELNSNPDVHGILVQLPLPKHINEEHILGAI 120

Query:   121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVG 180
             S++KDVDGFHPLNIGKLAMKGR+PLFLPCTPKGCLELL RSGV IKG+RAVVVGRSNIVG
Sbjct:   121 SIDKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLARSGVKIKGQRAVVVGRSNIVG 180

Query:   181 LPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240
             LPVSLLLLKADATVT VHSHT DPE+I+READIVIAA GQA MIKG+WIKPGAAVIDVGT
Sbjct:   181 LPVSLLLLKADATVTTVHSHTKDPEAIIREADIVIAACGQAHMIKGNWIKPGAAVIDVGT 240

Query:   241 NAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRV 296
             NAV D +KKSGYRLVGDVDF EA K                   LLRNT+DGAKRV
Sbjct:   241 NAVSDPSKKSGYRLVGDVDFAEASKVAGFITPVPGGVGPMTVAMLLRNTVDGAKRV 296

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2127113 EMB3127 "EMBRYO DEFECTIVE 3127" [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 168/292 (57%), Positives = 210/292 (71%)

Query:     5 SDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKAC 64
             S+  A +IDGKAVA+ IR EI  EV  + E  G +PGLAV++VG RKDS +YV  K+KAC
Sbjct:    65 SEGGAIVIDGKAVAKKIRDEITIEVSRMKESIGVIPGLAVILVGDRKDSATYVRNKKKAC 124

Query:    65 AEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEK 124
               VGIKSF++ L E  SE E++  V   N  P VHGILVQLPLP H++E+ +L  +S+EK
Sbjct:   125 DSVGIKSFEVRLAEDSSEEEVLKSVSGFNDDPSVHGILVQLPLPSHMDEQNILNAVSIEK 184

Query:   125 DVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVS 184
             DVDGFHPLNIG+LAM+GR+PLF+PCTPKGC+ELL R  + IKGKRAVV+GRSNIVG+P +
Sbjct:   185 DVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNIEIKGKRAVVIGRSNIVGMPAA 244

Query:   185 LLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
             LLL + DATV+I+HS T +PE I READI+I+A GQ  M++GSWIKPGA +IDVG N V+
Sbjct:   245 LLLQREDATVSIIHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVLIDVGINPVE 304

Query:   245 DSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRV 296
             D +   GYRLVGD+ + EA K                   LL NTL  AKR+
Sbjct:   305 DPSAARGYRLVGDICYEEASKVASAITPVPGGVGPMTIAMLLSNTLTSAKRI 356

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2064143 AT2G38660 [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 165/292 (56%), Positives = 211/292 (72%)

Query:     5 SDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKAC 64
             ++QK  +IDG  +A+ IR++I  EV  + +  GKVPGLAVV+VG ++DSQ+YV  K KAC
Sbjct:    59 TEQKTVVIDGNVIAEEIRTKIISEVGKMKKAVGKVPGLAVVLVGEQRDSQTYVRNKIKAC 118

Query:    65 AEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEK 124
              E GIKS   +LPE  +E ++IS + + N    +HGILVQLPLP+H+NE K+L  + LEK
Sbjct:   119 EETGIKSVLAELPEDCTEGQIISVLRKFNEDTSIHGILVQLPLPQHLNESKILNMVRLEK 178

Query:   125 DVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVS 184
             DVDGFHPLN+G LAM+GR+PLF+ CTPKGC+ELL R+GV I GK AVV+GRSNIVGLP+S
Sbjct:   179 DVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRTGVEIAGKNAVVIGRSNIVGLPMS 238

Query:   185 LLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
             LLL + DATV+ VH+ T DPE I R+ADIVIAAAG   +++GSW+KPGA VIDVGT  V+
Sbjct:   239 LLLQRHDATVSTVHAFTKDPEHITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVE 298

Query:   245 DSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRV 296
             DS+ + GYRLVGDV + EA                     LL NTL+ AKR+
Sbjct:   299 DSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLEAAKRI 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

DICTYBASE|DDB_G0283121 DDB_G0283121 "methenyl tetrahydrofolate cyclohydrolase / NADP-dependent methylene H4F dehydrogenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 147/285 (51%), Positives = 191/285 (67%)

Query:    11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
             IIDGK ++  ++  I +E+ L+ EK  + P L V++VG RKDSQ+YV  K+K  +++GI 
Sbjct:    10 IIDGKEISSQVKESIKDEITLMKEKGLRAPCLVVILVGDRKDSQTYVRNKKKTASDLGIN 69

Query:    71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
             S DI LPEQ ++ ELI  V   +   DV GILVQLPLP HINEE +L +I   KDVDGFH
Sbjct:    70 SIDILLPEQTTQQELIDLVQSYSKKDDVDGILVQLPLPSHINEEIILTQIDESKDVDGFH 129

Query:   131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
             P+NIGKLAM+GR   F PCTPKGC+E+L RSG+ I GK AVV+GRSNIVGLPVS+LLL  
Sbjct:   130 PVNIGKLAMRGRKADFEPCTPKGCIEMLDRSGIEIAGKNAVVLGRSNIVGLPVSMLLLSR 189

Query:   191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
             DATVTI HS T + +   READI++ A G+A ++K  W+K GA VIDVG N  D++ K  
Sbjct:   190 DATVTICHSKTPNLKEKCREADILVVAIGKAKLVKKDWVKTGAVVIDVGMNT-DENNK-- 246

Query:   251 GYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKR 295
                L GDVD++E  +                   L++NTL+ AK+
Sbjct:   247 ---LCGDVDYNEVKEVASYITPVPGGVGPMTIAMLMKNTLESAKK 288

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;IBA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IBA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000003436 ADE3 "Cytoplasmic trifunctional enzyme C1-tetrahydrofolate synthase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 668 (240.2 bits), Expect = 1.4e-65, P = 1.4e-65
 Identities = 143/297 (48%), Positives = 187/297 (62%)

Query:    11 IIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
             ++DGKA AQ  RS IA E++ +     G  P LA++ VG R DS +YV MKRKA  E GI
Sbjct:     5 VLDGKACAQQFRSNIANEIKSIQGHVPGFAPNLAIIQVGNRPDSATYVRMKRKAAEEAGI 64

Query:    70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
              +  I L E  +E E++  V +LN  P  HGI+VQLPLP H++E+++   +  EKDVDGF
Sbjct:    65 VANFIHLDESATEFEVLRYVDQLNEDPHTHGIIVQLPLPAHLDEDRITSRVLAEKDVDGF 124

Query:   130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
              P NIG+L  K   P FLPCTPKG +ELL ++ VTI+G R+VV+GRS+IVG PV+ LL  
Sbjct:   125 GPTNIGELNKKNGHPFFLPCTPKGIIELLHKANVTIEGSRSVVIGRSDIVGSPVAELLKS 184

Query:   190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKP--GAA------VIDVGTN 241
              ++TVTI HS T D  S + +ADIV+ A GQ   +KG W KP  G +      VIDVGTN
Sbjct:   185 LNSTVTITHSKTRDIASYLHDADIVVVAIGQPEFVKGEWFKPRDGTSSDKKTVVIDVGTN 244

Query:   242 AVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRVIE 298
              V D +KKSG++ VGDV+F+EA K                   L++NTL  AKR +E
Sbjct:   245 YVADPSKKSGFKCVGDVEFNEAIKYVHLITPVPGGVGPMTVAMLMQNTLIAAKRQME 301

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0006760 "folic acid-containing compound metabolic process" evidence=IMP

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;IMP

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000105 "histidine biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;IMP

GO:0009113 "purine nucleobase biosynthetic process" evidence=IMP

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IEA;IMP

CGD|CAL0000766 MIS11 [Candida albicans (taxid:5476)]

 Score = 663 (238.4 bits), Expect = 5.8e-65, P = 5.8e-65
 Identities = 138/290 (47%), Positives = 189/290 (65%)

Query:     9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKV-PGLAVVIVGGRKDSQSYVSMKRKACAEV 67
             A +IDGKA+A  +R++I +++     K+ +  P L+++ VG R DS +YV MK KA  E 
Sbjct:     3 AELIDGKAIALDLRTKIHDDIAQFQLKHPEFKPHLSIIQVGDRPDSNTYVKMKLKAAEEA 62

Query:    68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
              I    I LPE +S+ EL+SK+ +LN   DV GILVQLPLP+HI+E K+   +   KDVD
Sbjct:    63 SIGCELIKLPEDISQFELLSKIEKLNNSLDVDGILVQLPLPEHIDETKITDAVLANKDVD 122

Query:   128 GFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLL 187
             GF P N+G+LA KG +PLFLPCTPKG + L ++S + ++GK  VV+GRS+IVG P++ LL
Sbjct:   123 GFGPFNVGELAKKGGEPLFLPCTPKGIMHLFEKSKIDLEGKDVVVLGRSDIVGKPIARLL 182

Query:   188 LKADATVTIVHSHTT-DP-ESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
              KA+A VT+VHS T  D  ++ + +ADIV+AA GQ   +KG W+K G  VIDVGTN + D
Sbjct:   183 TKANANVTVVHSKTPLDKLKNYLGDADIVVAAIGQPQFVKGEWLKDGVVVIDVGTNFIPD 242

Query:   246 STKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKR 295
             ++KKSG R+VGDVDF  A                     LL N + GAK+
Sbjct:   243 ASKKSGQRMVGDVDFESAKTKASFITPVPGGVGPMTVACLLDNVVIGAKK 292

GO:0006546 "glycine catabolic process" evidence=NAS

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IEA

GO:0009257 "10-formyltetrahydrofolate biosynthetic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA

GO:0004479 "methionyl-tRNA formyltransferase activity" evidence=IEA

UNIPROTKB|Q59SM8 MIS11 "Likely C1-tetrahydrofolate synthase" [Candida albicans SC5314 (taxid:237561)]

 Score = 663 (238.4 bits), Expect = 5.8e-65, P = 5.8e-65
 Identities = 138/290 (47%), Positives = 189/290 (65%)

Query:     9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKV-PGLAVVIVGGRKDSQSYVSMKRKACAEV 67
             A +IDGKA+A  +R++I +++     K+ +  P L+++ VG R DS +YV MK KA  E 
Sbjct:     3 AELIDGKAIALDLRTKIHDDIAQFQLKHPEFKPHLSIIQVGDRPDSNTYVKMKLKAAEEA 62

Query:    68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
              I    I LPE +S+ EL+SK+ +LN   DV GILVQLPLP+HI+E K+   +   KDVD
Sbjct:    63 SIGCELIKLPEDISQFELLSKIEKLNNSLDVDGILVQLPLPEHIDETKITDAVLANKDVD 122

Query:   128 GFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLL 187
             GF P N+G+LA KG +PLFLPCTPKG + L ++S + ++GK  VV+GRS+IVG P++ LL
Sbjct:   123 GFGPFNVGELAKKGGEPLFLPCTPKGIMHLFEKSKIDLEGKDVVVLGRSDIVGKPIARLL 182

Query:   188 LKADATVTIVHSHTT-DP-ESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
              KA+A VT+VHS T  D  ++ + +ADIV+AA GQ   +KG W+K G  VIDVGTN + D
Sbjct:   183 TKANANVTVVHSKTPLDKLKNYLGDADIVVAAIGQPQFVKGEWLKDGVVVIDVGTNFIPD 242

Query:   246 STKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKR 295
             ++KKSG R+VGDVDF  A                     LL N + GAK+
Sbjct:   243 ASKKSGQRMVGDVDFESAKTKASFITPVPGGVGPMTVACLLDNVVIGAKK 292

GO:0006546 "glycine catabolic process" evidence=NAS

FB|FBgn0020385 pug "pugilist" [Drosophila melanogaster (taxid:7227)]

 Score = 664 (238.8 bits), Expect = 6.4e-65, P = 6.4e-65
 Identities = 142/293 (48%), Positives = 188/293 (64%)

Query:     9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGK-VPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
             A II G AVA++IR E+  EV  +S++    VPGL +V VGGR+DS  Y+ MK KA  E+
Sbjct:    38 AKIISGTAVAKSIREELRNEVTAMSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAATEI 97

Query:    68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP--KHINEEKVLGEISLEKD 125
             GI +  + LP  ++E EL+ K+++LN  P VHGI+VQ+PL     I+  ++   +S EKD
Sbjct:    98 GIDAAHVQLPRSITEVELLDKINDLNEDPRVHGIIVQMPLDCDTPIDSHRITDAVSPEKD 157

Query:   126 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL 185
             VDG H +N G+LA+ G    FLPCTP GCLEL++RSGV I G RAVV+GRS IVG P + 
Sbjct:   158 VDGLHTVNEGRLAI-GDLGGFLPCTPWGCLELIRRSGVEIAGARAVVLGRSKIVGTPAAE 216

Query:   186 LLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
             LL  A+ATVT+ HS T + E I R ADI++   G A M+KGSWIKPGA VID G N   D
Sbjct:   217 LLKWANATVTVCHSKTRNLEEITRSADILVVGIGVAEMVKGSWIKPGAVVIDCGINVKPD 276

Query:   246 STKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRVIE 298
             ++K SG +LVGDVD+ EA +                   L++NT+  A R +E
Sbjct:   277 ASKASGSKLVGDVDYAEALQVAGHLTPVPGGVGPMTVAMLMKNTVRSAARFLE 329

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=ISS;IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=ISS;IBA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=ISS;IBA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

ASPGD|ASPL0000036964 AN2998 [Emericella nidulans (taxid:162425)]

 Score = 661 (237.7 bits), Expect = 2.7e-64, P = 2.7e-64
 Identities = 138/288 (47%), Positives = 181/288 (62%)

Query:    12 IDGKAVAQTIRSEIAEEVRLLSEKYGKV-PGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
             IDG  +A+ IR+ + +E++ + E   +  P L +  VG R DS +YV MK KA  E  I 
Sbjct:    98 IDGTQIAKDIRAGLKDEIQKIQEINPRFKPSLVIFQVGDRSDSSTYVRMKLKAAEEANIL 157

Query:    71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
                ++ PE +++ E++ ++ + N  P VHGILVQLPLP+H++E  V   ++ EKDVDGF 
Sbjct:   158 CKIVNFPESITQPEILQEISQANNDPSVHGILVQLPLPQHLSEHAVTSAVADEKDVDGFG 217

Query:   131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
              +NIG+LA +G  PLF+PCTPK  + LLK SGV   GK AVV+GRS+IVG PVS LL  A
Sbjct:   218 AINIGELAKRGGRPLFVPCTPKAVMVLLKASGVDPAGKEAVVLGRSDIVGSPVSYLLKNA 277

Query:   191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
             DATVT+ HS T D  S V++ADIV+AA G+   +KG WIKPGA VIDVG N   DSTKKS
Sbjct:   278 DATVTVCHSKTPDIASAVKKADIVVAAIGKTEFVKGDWIKPGAVVIDVGINYKPDSTKKS 337

Query:   251 GYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRVIE 298
             G RLVGDV++  A +                   LL N +  AK   E
Sbjct:   338 GQRLVGDVEYESASQVASKITPVPGGVGPMTVAMLLENVVASAKAYFE 385

GO:0006730 "one-carbon metabolic process" evidence=IEA;RCA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;RCA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IEA;RCA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;RCA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IEA

GO:0009257 "10-formyltetrahydrofolate biosynthetic process" evidence=IEA

TIGR_CMR|GSU_0862 GSU_0862 "folD bifunctional protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 144/286 (50%), Positives = 184/286 (64%)

Query:     9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
             ATIIDGKA+A+ IR+++A +V+ L  + G  PGLA V+VG    S+ YV MK  AC ++G
Sbjct:     2 ATIIDGKAIAEKIRADLAAQVKELQSR-GITPGLATVLVGSDPASEVYVRMKGDACNKLG 60

Query:    69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
             + S  I  P + +E EL++ ++ELN  P +HGILVQLPLP  IN ++VL  IS  KDVDG
Sbjct:    61 MHSVKITRPAETTEEELLALINELNNDPAIHGILVQLPLPPQINADRVLEAISPAKDVDG 120

Query:   129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
             FHP N+G+L + G+ P F PCTP G + +L+ +GV + GK  VVVGRSNIVG PV+L+ L
Sbjct:   121 FHPYNVGRL-VTGK-PTFQPCTPYGVMVMLQEAGVDLAGKEVVVVGRSNIVGKPVALMCL 178

Query:   189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
             + +ATVTI HS T D    VR AD+VIAA G   MIKG WIK GA VIDVG N V +  K
Sbjct:   179 QRNATVTICHSKTRDLPGRVRAADVVIAAVGVPEMIKGDWIKEGAVVIDVGVNRVGE--K 236

Query:   249 KSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAK 294
             K    LVGDV+F  A +                   LL NTL+ AK
Sbjct:   237 K----LVGDVEFAAAAERASAITPVPGGVGPMTITMLLHNTLEAAK 278

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=ISS

GO:0004486 "methylenetetrahydrofolate dehydrogenase [NAD(P)+

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0009113 "purine nucleobase biosynthetic process" evidence=ISS

GO:0009257 "10-formyltetrahydrofolate biosynthetic process" evidence=ISS

GO:0015940 "pantothenate biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3ECA6	FOLD_CHLL2	3, ., 5, ., 4, ., 9	0.5358	0.9665	0.9763	yes	no
Q71ZW2	FOLD_LISMF	3, ., 5, ., 4, ., 9	0.5432	0.9364	0.9859	yes	no
C0ZC05	FOLD_BREBN	3, ., 5, ., 4, ., 9	0.5400	0.9297	0.9788	yes	no
A4SER8	FOLD_PROVI	3, ., 5, ., 4, ., 9	0.5153	0.9665	0.9796	yes	no
Q75TC1	FOLD_GEOKA	3, ., 5, ., 4, ., 9	0.5312	0.9331	0.9823	yes	no
A5VV73	FOLD_BRUO2	3, ., 5, ., 4, ., 9	0.5259	0.9598	0.9598	yes	no
A1AL91	FOLD_PELPD	3, ., 5, ., 4, ., 9	0.5679	0.9297	0.9823	yes	no
B8DFW8	FOLD_LISMH	3, ., 5, ., 4, ., 9	0.5432	0.9364	0.9859	yes	no
Q8YCL8	FOLD_BRUME	3, ., 5, ., 4, ., 9	0.5259	0.9598	0.9598	yes	no
C1D5X9	FOLD_LARHH	3, ., 5, ., 4, ., 9	0.5104	0.9297	0.9823	yes	no
A5GAM5	FOLD_GEOUR	3, ., 5, ., 4, ., 9	0.5714	0.9297	0.9928	yes	no
C1L2R6	FOLD_LISMC	3, ., 5, ., 4, ., 9	0.5432	0.9364	0.9859	yes	no
Q8Y7C5	FOLD_LISMO	3, ., 5, ., 4, ., 9	0.5432	0.9364	0.9859	yes	no
Q92BZ4	FOLD_LISIN	3, ., 5, ., 4, ., 9	0.5432	0.9364	0.9859	yes	no
A7HSV9	FOLD_PARL1	3, ., 5, ., 4, ., 9	0.5277	0.9531	0.9563	yes	no
Q3ASI0	FOLD_CHLCH	3, ., 5, ., 4, ., 9	0.5	0.9565	0.9694	yes	no
B4S820	FOLD_PROA2	3, ., 5, ., 4, ., 9	0.5051	0.9531	0.9661	yes	no
B9M769	FOLD_GEOSF	3, ., 5, ., 4, ., 9	0.5609	0.9297	0.9928	yes	no
A3DEE6	FOLD_CLOTH	3, ., 5, ., 4, ., 9	0.5191	0.9297	0.9754	yes	no
A0AIG1	FOLD_LISW6	3, ., 5, ., 4, ., 9	0.5363	0.9364	0.9859	yes	no
A6X610	FOLD_OCHA4	3, ., 5, ., 4, ., 9	0.5328	0.9598	0.9598	yes	no
Q39WH4	FOLD2_GEOMG	3, ., 5, ., 4, ., 9	0.5620	0.9397	0.9859	yes	no
Q74EU7	FOLD2_GEOSL	3, ., 5, ., 4, ., 9	0.5419	0.9264	0.9719	yes	no
B4RE11	FOLD_PHEZH	3, ., 5, ., 4, ., 9	0.5376	0.9565	0.9629	yes	no
B1HRX9	FOLD_LYSSC	3, ., 5, ., 4, ., 9	0.5087	0.9297	0.9788	yes	no
A1BBS1	FOLD2_PARDP	3, ., 5, ., 4, ., 9	0.5244	0.9397	0.9304	yes	no
B2SAP4	FOLD_BRUA1	3, ., 5, ., 4, ., 9	0.5259	0.9598	0.9598	yes	no
Q2G338	FOLD_NOVAD	3, ., 5, ., 4, ., 9	0.5156	0.9498	0.9562	yes	no
Q5NP22	FOLD_ZYMMO	3, ., 5, ., 4, ., 9	0.5085	0.9598	0.9663	yes	no
C0RLT3	FOLD_BRUMB	3, ., 5, ., 4, ., 9	0.5259	0.9598	0.9598	yes	no
Q8FVP6	FOLD_BRUSU	3, ., 5, ., 4, ., 9	0.5259	0.9598	0.9598	yes	no
Q1WUJ3	FOLD_LACS1	3, ., 5, ., 4, ., 9	0.5191	0.9297	0.9754	yes	no
B3EJG9	FOLD_CHLPB	3, ., 5, ., 4, ., 9	0.5154	0.9598	0.9630	yes	no
A9WZ75	FOLD_BRUSI	3, ., 5, ., 4, ., 9	0.5259	0.9598	0.9598	yes	no
B3QUL4	FOLD_CHLT3	3, ., 5, ., 4, ., 9	0.4982	0.9598	0.9761	yes	no
A8I5P5	FOLD_AZOC5	3, ., 5, ., 4, ., 9	0.5492	0.9364	0.9655	yes	no
A0LE04	FOLD_MAGSM	3, ., 5, ., 4, ., 9	0.5644	0.9331	0.9789	yes	no
Q2YL33	FOLD_BRUA2	3, ., 5, ., 4, ., 9	0.5259	0.9598	0.9598	yes	no
B4SGR4	FOLD_PELPB	3, ., 5, ., 4, ., 9	0.5221	0.9665	0.9796	yes	no
Q73RS2	FOLD_TREDE	3, ., 5, ., 4, ., 9	0.5363	0.9498	0.9692	yes	no
A4IQS0	FOLD_GEOTN	3, ., 5, ., 4, ., 9	0.5451	0.9331	0.9823	yes	no
Q578R0	FOLD_BRUAB	3, ., 5, ., 4, ., 9	0.5259	0.9598	0.9598	yes	no
Q2RIB4	FOLD_MOOTA	3, ., 5, ., 4, ., 9	0.5520	0.9264	0.9892	yes	no
A9MC67	FOLD_BRUC2	3, ., 5, ., 4, ., 9	0.5259	0.9598	0.9598	yes	no
A1BF67	FOLD_CHLPD	3, ., 5, ., 4, ., 9	0.5153	0.9665	0.9796	yes	no
Q167Y9	FOLD1_ROSDO	3, ., 5, ., 4, ., 9	0.5294	0.9565	0.9533	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.4.9	0.946
3rd Layer	3.5.4	0.963
3rd Layer	1.5.1	0.963
4th Layer	1.5.1.5	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00027962001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (299 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00024726001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (594 aa)	•	•				•	•		0.937
	GSVIVG00012972001	SubName- Full=Chromosome undetermined scaffold_419, whole genome shotgun sequence; (221 aa)	•					•	•		0.738
	GSVIVG00005777001	SubName- Full=Chromosome chr3 scaffold_158, whole genome shotgun sequence; (214 aa)	•						•		0.639
	GSVIVG00010970001	RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (408 aa)	•					•	•		0.614
	GSVIVG00032161001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (428 aa)	•					•	•		0.609
	GSVIVG00000242001	SubName- Full=Chromosome chr12 scaffold_103, whole genome shotgun sequence; (461 aa)	•					•	•		0.525
	GSVIVG00023032001	RecName- Full=Methylenetetrahydrofolate reductase; EC=1.5.1.20; (587 aa)						•	•		0.518
	GSVIVG00007436001	SubName- Full=Chromosome chr14 scaffold_190, whole genome shotgun sequence; (123 aa)	•						•		0.500
	GSVIVG00011727001	SubName- Full=Chromosome undetermined scaffold_332, whole genome shotgun sequence; (300 aa)	•					•	•		0.501
	GSVIVG00030599001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (344 aa)							•		0.492

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
PLN02516	299	PLN02516, PLN02516, methylenetetrahydrofolate dehy	0.0
PLN02616	364	PLN02616, PLN02616, tetrahydrofolate dehydrogenase	1e-142
PLN02897	345	PLN02897, PLN02897, tetrahydrofolate dehydrogenase	1e-140
COG0190	283	COG0190, FolD, 5,10-methylene-tetrahydrofolate deh	1e-136
PRK10792	285	PRK10792, PRK10792, bifunctional 5,10-methylene-te	1e-129
PRK14188	296	PRK14188, PRK14188, bifunctional 5,10-methylene-te	1e-127
PRK14190	284	PRK14190, PRK14190, bifunctional 5,10-methylene-te	1e-120
PRK14189	285	PRK14189, PRK14189, bifunctional 5,10-methylene-te	1e-117
PRK14174	295	PRK14174, PRK14174, bifunctional 5,10-methylene-te	1e-111
PRK14186	297	PRK14186, PRK14186, bifunctional 5,10-methylene-te	1e-108
PRK14191	285	PRK14191, PRK14191, bifunctional 5,10-methylene-te	1e-106
PRK14179	284	PRK14179, PRK14179, bifunctional 5,10-methylene-te	1e-105
PRK14167	297	PRK14167, PRK14167, bifunctional 5,10-methylene-te	1e-103
PRK14185	293	PRK14185, PRK14185, bifunctional 5,10-methylene-te	1e-101
PRK14193	284	PRK14193, PRK14193, bifunctional 5,10-methylene-te	1e-100
PRK14194	301	PRK14194, PRK14194, bifunctional 5,10-methylene-te	1e-100
PRK14184	286	PRK14184, PRK14184, bifunctional 5,10-methylene-te	1e-99
PRK14168	297	PRK14168, PRK14168, bifunctional 5,10-methylene-te	3e-97
PRK14187	294	PRK14187, PRK14187, bifunctional 5,10-methylene-te	3e-96
PRK14170	284	PRK14170, PRK14170, bifunctional 5,10-methylene-te	8e-95
PRK14178	279	PRK14178, PRK14178, bifunctional 5,10-methylene-te	1e-94
PRK14183	281	PRK14183, PRK14183, bifunctional 5,10-methylene-te	5e-93
PRK14176	287	PRK14176, PRK14176, bifunctional 5,10-methylene-te	3e-92
PRK14182	282	PRK14182, PRK14182, bifunctional 5,10-methylene-te	8e-89
PRK14172	278	PRK14172, PRK14172, bifunctional 5,10-methylene-te	1e-87
PRK14192	283	PRK14192, PRK14192, bifunctional 5,10-methylene-te	2e-87
PRK14175	286	PRK14175, PRK14175, bifunctional 5,10-methylene-te	1e-86
pfam02882	160	pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydro	2e-86
cd01080	168	cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding	5e-86
PRK14173	287	PRK14173, PRK14173, bifunctional 5,10-methylene-te	1e-85
PRK14166	282	PRK14166, PRK14166, bifunctional 5,10-methylene-te	6e-84
PRK14171	288	PRK14171, PRK14171, bifunctional 5,10-methylene-te	6e-81
PRK14181	287	PRK14181, PRK14181, bifunctional 5,10-methylene-te	1e-80
PRK14180	282	PRK14180, PRK14180, bifunctional 5,10-methylene-te	2e-79
PRK14169	282	PRK14169, PRK14169, bifunctional 5,10-methylene-te	7e-78
PRK14177	284	PRK14177, PRK14177, bifunctional 5,10-methylene-te	9e-77
pfam00763	117	pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydroge	3e-51
cd05212	140	cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) b	3e-29
cd01079	197	cd01079, NAD_bind_m-THF_DH, NAD binding domain of	3e-12
COG2423	330	COG2423, COG2423, Predicted ornithine cyclodeamina	1e-04
cd05191	86	cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do	5e-04
PRK06199	379	PRK06199, PRK06199, ornithine cyclodeaminase; Vali	0.001

>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase (NADP+)

 Score =  551 bits (1420), Expect = 0.0
 Identities = 257/298 (86%), Positives = 274/298 (91%)

Query: 1   MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
           MA+PSD  A IIDGKA+A+ IRSEIAEEV  LSEK+GKVPGLAVVIVG RKDSQ+YV+MK
Sbjct: 1   MASPSDHVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMK 60

Query: 61  RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
           RKACAEVGIKSFD+DLPE +SEAELISKVHELN  PDVHGILVQLPLPKHINEEK+L EI
Sbjct: 61  RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEI 120

Query: 121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVG 180
           SLEKDVDGFHPLNIGKLAMKGR+PLFLPCTPKGCLELL RSG+ IKGK+AVVVGRSNIVG
Sbjct: 121 SLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVG 180

Query: 181 LPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240
           LPVSLLLLKADATVT+VHS T DPESIVREADIVIAAAGQAMMIKG WIKPGAAVIDVGT
Sbjct: 181 LPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGT 240

Query: 241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
           NAV D +KKSGYRLVGDVDF E  KVAG +TPVPGGVGPMTVAMLL+NT+DGAKRV  
Sbjct: 241 NAVSDPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVFA 298

Length = 299

>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase, putative

 Score =  405 bits (1042), Expect = e-142
 Identities = 188/292 (64%), Positives = 229/292 (78%)

Query: 5   SDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKAC 64
           S+  A +IDGKAVA+ IR EI  EV  + E  G VPGLAV++VG RKDS +YV  K+KAC
Sbjct: 69  SEGGAKVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKAC 128

Query: 65  AEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEK 124
             VGI SF++ LPE  +E E++  +   N  P VHGILVQLPLP H++E+ +L  +S+EK
Sbjct: 129 DSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEK 188

Query: 125 DVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVS 184
           DVDGFHPLNIG+LAM+GR+PLF+PCTPKGC+ELL R  V IKGKRAVV+GRSNIVG+P +
Sbjct: 189 DVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAA 248

Query: 185 LLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
           LLL + DATV+IVHS T +PE I READI+I+A GQ  M++GSWIKPGA VIDVG N V+
Sbjct: 249 LLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVE 308

Query: 245 DSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296
           D++   GYRLVGDV + EACKVA  VTPVPGGVGPMT+AMLL NTL  AKR+
Sbjct: 309 DASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRI 360

Length = 364

>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase, putative

 Score =  400 bits (1028), Expect = e-140
 Identities = 181/292 (61%), Positives = 229/292 (78%)

Query: 5   SDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKAC 64
           ++QK  +IDG  +A+ IR++IA EVR + +  GKVPGLAVV+VG ++DSQ+YV  K KAC
Sbjct: 52  TEQKTVVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKAC 111

Query: 65  AEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEK 124
            E GIKS   +LPE  +E +++S + + N    +HGILVQLPLP+H++E K+L  + LEK
Sbjct: 112 EETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEK 171

Query: 125 DVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVS 184
           DVDGFHPLN+G LAM+GR+PLF+ CTPKGC+ELL RSGV I GK AVV+GRSNIVGLP+S
Sbjct: 172 DVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMS 231

Query: 185 LLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
           LLL + DATV+ VH+ T DPE I R+ADIVIAAAG   +++GSW+KPGA VIDVGT  V+
Sbjct: 232 LLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVE 291

Query: 245 DSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296
           DS+ + GYRLVGDV + EA  VA  +TPVPGGVGPMT+ MLL NTLD AKR+
Sbjct: 292 DSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRI 343

Length = 345

>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

 Score =  386 bits (995), Expect = e-136
 Identities = 162/287 (56%), Positives = 200/287 (69%), Gaps = 8/287 (2%)

Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
            IIDGKA+A+ IR E+ E+V  L  K G  PGLAV++VG    SQ YV  K+KA  E+GI
Sbjct: 1   MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGI 60

Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
            S   DLPE ++E EL++ + ELN  P+V GILVQLPLPKH++E+K+L  I  EKDVDGF
Sbjct: 61  ASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGF 120

Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
           HP N+GKLA    +P FLPCTP G + LL+  G+ ++GK  VVVGRSNIVG P++LLLL 
Sbjct: 121 HPYNLGKLA--QGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLN 178

Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
           A+ATVT+ HS T D  SI + ADIV+ A G+   IK   +KPGA VIDVG N V+D    
Sbjct: 179 ANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND---- 234

Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296
              +LVGDVDF    + A  +TPVPGGVGPMTVAMLL NTL  A+R 
Sbjct: 235 --GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQ 279

Length = 283

>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  367 bits (945), Expect = e-129
 Identities = 155/285 (54%), Positives = 189/285 (66%), Gaps = 8/285 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A IIDGK +AQ +RSE+A++V+       + PGLAVV+VG    SQ YV+ KRKAC EVG
Sbjct: 3   AKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVG 62

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
             S   DLPE  SEAEL++ + ELN  P + GILVQLPLP HI+  KVL  I  +KDVDG
Sbjct: 63  FVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDG 122

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP N+G+LA   R PL  PCTP+G + LL+R G+   G  AVVVG SNIVG P+SL LL
Sbjct: 123 FHPYNVGRLAQ--RIPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELL 180

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
            A  TVT+ H  T +    VR AD+++ A G+   I G WIKPGA VIDVG N ++D   
Sbjct: 181 LAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDG-- 238

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293
               +LVGDV+F  A + A  +TPVPGGVGPMTVA LL NTL   
Sbjct: 239 ----KLVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQAC 279

Length = 285

>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  363 bits (935), Expect = e-127
 Identities = 156/288 (54%), Positives = 193/288 (67%), Gaps = 3/288 (1%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           ATIIDGKA A  +R+ +A EV  L   +G  PGLAVV+VG    SQ YV  K K   E G
Sbjct: 2   ATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           + SF+  LP   S+AEL++ +  LN  P +HGILVQLPLPKH++ E V+  I  EKDVDG
Sbjct: 62  MASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
            H +N G+LA    +   +PCTP GC+ LL+R    + G  AVV+GRSN+VG P++ LLL
Sbjct: 122 LHVVNAGRLA--TGETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLL 179

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
            A+ATVTI HS T D  ++ R ADI++AA G+  M+KG WIKPGA VIDVG N +    K
Sbjct: 180 AANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPEK 239

Query: 249 KSG-YRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
             G  RLVGDV F EA +VAG +TPVPGGVGPMT+A LL NTL  A R
Sbjct: 240 GEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACR 287

Length = 296

>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  344 bits (885), Expect = e-120
 Identities = 146/287 (50%), Positives = 190/287 (66%), Gaps = 9/287 (3%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A IIDGK VA+  R ++ EEV  L E+ G VPGLAV++VG    S SYV  K+KA  +VG
Sbjct: 3   AVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I S   + P  ++E EL++ +  LN  P ++GILVQLPLPKHI+E+ V+  IS EKDVDG
Sbjct: 62  IYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP+N+G++ +      FLPCTP G LELLK   + I GK  VVVGRSNIVG PV  LLL
Sbjct: 122 FHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLL 179

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
             +ATVT  HS T +   + ++ADI+I A G+  +I    +K GA VIDVG N +++   
Sbjct: 180 NENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLENG-- 237

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               +L GDVDF    + A  +TPVPGGVGPMT+ ML+ NT++ AKR
Sbjct: 238 ----KLCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKR 280

Length = 284

>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  337 bits (866), Expect = e-117
 Identities = 147/287 (51%), Positives = 195/287 (67%), Gaps = 9/287 (3%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A +IDG A+++ +R+E A+    L+ + G  PGLAV++VG    SQ YV  K KAC + G
Sbjct: 3   AQLIDGNALSKQLRAEAAQRAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
             S     P  +SEAEL++++ ELN  P +HGILVQLPLPKHI+  KV+  I+ EKDVDG
Sbjct: 62  FHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FH  N G L M G+ PLF PCTP G +++L+  G+ ++G  AVV+GRSNIVG P+++LLL
Sbjct: 122 FHVANAGAL-MTGQ-PLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLL 179

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
           +A ATVTI HS T D  +  R+ADIV+AA G+  ++    +KPGA VIDVG N  D    
Sbjct: 180 QAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDAG-- 237

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               +L GDVDF    +VAG +TPVPGGVGPMT+ MLL NT++ A+R
Sbjct: 238 ----KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAER 280

Length = 285

>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  322 bits (828), Expect = e-111
 Identities = 156/294 (53%), Positives = 193/294 (65%), Gaps = 4/294 (1%)

Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
            IIDGK V+  +++E+   V     K GKVPGL V+IVG    SQ YV  K K+C E+G+
Sbjct: 2   LIIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGM 61

Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
            S  I+LP   +E  L+ K+ +LN  PDVHGILVQ PLPK I+E  V   I   KDVDGF
Sbjct: 62  NSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGF 121

Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
           HP N+G+L M   D  F+ CTP G LELL R  +  KGK  VVVGRSNIVG P++ L+L+
Sbjct: 122 HPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQ 181

Query: 190 ----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
               ++ TVTI HS T D  S  R+ADI+IAA G+A  I    +KPGA VIDVG N ++D
Sbjct: 182 KLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIED 241

Query: 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
            + KSGYRLVGDVD+      A  +TPVPGGVGPMT+AMLL+NTL   +RV  L
Sbjct: 242 PSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVNNL 295

Length = 295

>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  315 bits (810), Expect = e-108
 Identities = 145/287 (50%), Positives = 188/287 (65%), Gaps = 4/287 (1%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A I+DGKA+A  I   +  ++     K G+ PGLAV+ VG    S  YV  K KACA VG
Sbjct: 2   ALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I SF   LP   S+AE+ + + +LN    V GIL+QLPLPKH++E  +L  I  +KD DG
Sbjct: 62  IASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
            HPLN+G+L +KG +P    CTP G + LL+   + I GK+AVVVGRS +VG P++L+LL
Sbjct: 122 LHPLNLGRL-VKG-EPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLL 179

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
            A+ATVTI HS T D  SI READI++AAAG+  +I    +KPGA V+DVG + +  S  
Sbjct: 180 AANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPSSDG 239

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
           K+  RL GDVDF E   VA  +TPVPGGVGPMTV MLL NT+   ++
Sbjct: 240 KT--RLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQK 284

Length = 297

>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  310 bits (797), Expect = e-106
 Identities = 134/289 (46%), Positives = 184/289 (63%), Gaps = 8/289 (2%)

Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
            ++DGKA++  I  ++  ++++L+ + GK P LAV++VG    SQ+YV+MK KAC  VG+
Sbjct: 2   VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGM 61

Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
            S    L E  +EAEL+S + +LN   ++ GILVQLPLP+HI+ + VL  I   KDVDGF
Sbjct: 62  DSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGF 121

Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
           HPLNIGKL     D  F+P TP G + LLK   + IKGK  V++G SNIVG P+++L+L 
Sbjct: 122 HPLNIGKLC-SQLDG-FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN 179

Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
           A A+V++ H  T D     + ADIV    G+  +IK S +K GA V+D+G N ++D    
Sbjct: 180 AGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG--- 236

Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
              RLVGDVDF      A  +TPVPGGVGPMT+  LL NTL  A++   
Sbjct: 237 ---RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAEKRQR 282

Length = 285

>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  308 bits (791), Expect = e-105
 Identities = 141/287 (49%), Positives = 189/287 (65%), Gaps = 8/287 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
             IIDGKA+AQ +++E+AE+V  L E+ G VPGL V++VG    SQ YV  K ++    G
Sbjct: 2   TEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
            KS  + LPE +S+ EL+  +   N  P  HGILVQLPLPKHINEEK+L  I  +KDVDG
Sbjct: 62  FKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP+N G L   GR P+ +PCTP G +E+ +   V ++GK AVV+GRSNIVG P++ LLL
Sbjct: 122 FHPMNTGHL-WSGR-PVMIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLL 179

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
             +ATVT+ HS T +   + R+ADI++ A G+   +   ++K GA VIDVG N  ++   
Sbjct: 180 DKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDENG-- 237

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               +L+GDVDF E  +VA  +TPVPGGVGPMT+ ML+  T   A R
Sbjct: 238 ----KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALR 280

Length = 284

>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  302 bits (775), Expect = e-103
 Identities = 145/289 (50%), Positives = 187/289 (64%), Gaps = 8/289 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
             IIDG AVA  IR ++ + +  L +  G  PGLA V++     S++YVSMK++ C EVG
Sbjct: 2   TEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVG 60

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I++ D+++       EL   + ELN   DVHGILVQ+P+P H+++ +VL  I   KDVDG
Sbjct: 61  IEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDG 120

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVS-LLL 187
           FHP N+G+L     D  F PCTP G  +LL  +GV  +G   VVVGRS+IVG P++ LL+
Sbjct: 121 FHPENVGRLV--AGDARFKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLI 178

Query: 188 LKAD---ATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
            KAD   ATVT+ HS T D  +  R ADIV+AAAG   +I GS +  GA VIDVG N VD
Sbjct: 179 QKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRVD 238

Query: 245 DSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293
             T+K GY LVGDV+F  A + A  +TPVPGGVGPMT AMLL NT+  A
Sbjct: 239 ADTEK-GYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAA 286

Length = 297

>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  299 bits (766), Expect = e-101
 Identities = 144/292 (49%), Positives = 192/292 (65%), Gaps = 6/292 (2%)

Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
            +IDGKA++  I+ EIA EV  +  K GK P LA ++VG    S++YV+ K KAC E G 
Sbjct: 2   QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGF 61

Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
           KS  I     V+E EL++KV ELN   DV G +VQLPLPKHI+E+KV+  I   KDVDGF
Sbjct: 62  KSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGF 121

Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
           HP+N+G++++    P F+  TP G LELLKR  +   GK+ VV+GRSNIVG P++ L+++
Sbjct: 122 HPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ 179

Query: 190 ----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
                D TVT+ HS + + +    EADI+IAA GQ   +K   +K GA VIDVGT  V D
Sbjct: 180 KAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPD 239

Query: 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
           +T+KSG++L GDV F E       +TPVPGGVGPMT+  L++NTL   K+ I
Sbjct: 240 ATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKAI 291

Length = 293

>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  295 bits (757), Expect = e-100
 Identities = 136/289 (47%), Positives = 179/289 (61%), Gaps = 12/289 (4%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A I+DGKA A  I++++AE V  L EK G  PGL  V+VG    SQ+YV  K + CAEVG
Sbjct: 3   AIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I S   DLP   ++ EL + + ELN  P   G +VQLPLPKH++E  VL  I   KD DG
Sbjct: 62  ITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
            HP N+G+L +    P  LPCTP+G + LL+R  V + G   VV+GR   VG P+ LLL 
Sbjct: 122 LHPTNLGRLVLNEPAP--LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLT 179

Query: 189 K--ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
           +   +ATVT+ H+ T D  +  R ADI++AAAG A ++    +KPGAAV+DVG +   D 
Sbjct: 180 RRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAGD- 238

Query: 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
                 +LVGDV   +  +VAG V+P PGGVGPMT A LL N ++ A+R
Sbjct: 239 -----GKLVGDVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAER 281

Length = 284

>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  294 bits (755), Expect = e-100
 Identities = 146/286 (51%), Positives = 194/286 (67%), Gaps = 6/286 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A +IDGKA A  + +++ E+VR L    G  P LAV++VG    SQ YV  K     E G
Sbjct: 4   AKLIDGKAAAARVLAQVREDVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAEEAG 62

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I+S +  LP   S+A L++ + ELN  P V+GIL+QLPLP HI+E +VL  I+  KDVDG
Sbjct: 63  IRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDG 122

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FH  N+G L+ +GRD L  PCTP GCL LL+ +   + GK AVV+GRSNIVG P++ LLL
Sbjct: 123 FHSENVGGLS-QGRDVL-TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLL 180

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
           +A  +VT+VHS +TD +++ R+ADIV+AA G+  +I   W+KPGA VIDVG N +DD  +
Sbjct: 181 QAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDDGR 240

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
               RLVGDVDF  A  V   +TPVPGGVGPMT+A L++NT+  A+
Sbjct: 241 S---RLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAAR 283

Length = 301

>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  293 bits (752), Expect = 1e-99
 Identities = 140/288 (48%), Positives = 181/288 (62%), Gaps = 13/288 (4%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           ++DGKA A TIR E+  EV  L+ ++G+ PGLAV++VG    SQ YV  K +AC + GI 
Sbjct: 3   LLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIV 62

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S    LP   ++ EL   + ELN  PD+ GIL+QLPLPK ++ ++ L  I   KDVDGFH
Sbjct: 63  SEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFH 122

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK- 189
           P N+G+LA+    P F PCTP G + LL+R G++  GK+AVVVGRSNIVG P++L+L   
Sbjct: 123 PENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP 180

Query: 190 ---ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
              A+ATVT+ HS T D     READ +  A G+   +    +KPGA V+DVG N  DD 
Sbjct: 181 GKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDDG 240

Query: 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
                  LVGD DF     VA  +TPVPGGVGPMT+A LL NT+   K
Sbjct: 241 -------LVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWK 281

Length = 286

>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  288 bits (738), Expect = 3e-97
 Identities = 145/290 (50%), Positives = 187/290 (64%), Gaps = 4/290 (1%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A II G  + + I  EI  EV  L EKYGKVPGL  ++VG    S SYV++K K    +G
Sbjct: 3   AKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLG 62

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
                 +    ++E EL++ + + N    +HGILVQLPLPKHINE+KVL  I  +KDVDG
Sbjct: 63  FHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDG 122

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP+N+G+L + G +  FLPCTP G  E+L RSGV   G   VVVGRSNIVG P++ ++ 
Sbjct: 123 FHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMT 182

Query: 189 K----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
           +    A+ATVTIVH+ + +     + ADI+I AAG   ++K  WIKPGA VIDVG N V 
Sbjct: 183 QKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVG 242

Query: 245 DSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
            +       L GDVDF    ++AG +TPVPGGVGPMT+AML+RNTL  AK
Sbjct: 243 TNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAK 292

Length = 297

>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  285 bits (731), Expect = 3e-96
 Identities = 134/285 (47%), Positives = 178/285 (62%), Gaps = 3/285 (1%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
             IIDGK +A  I   +A  +  L  ++   P L V++VG    SQ YV  K++    +G
Sbjct: 2   TNIIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           ++S  I LP  +SE+ LI K++ELN    VHGILVQLP+P HI++  ++  I  EKDVDG
Sbjct: 62  LRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FH  N+G+L    +    +PCTPKGCL L+K     + G  AVV+GRSNIVG P++ LLL
Sbjct: 122 FHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLL 181

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
             + TVT VHS T D      +ADI++AA G    +K SWIK GA VIDVG N++++   
Sbjct: 182 GENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGGV 241

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293
           K   + VGDVDF E  K A  +TPVPGGVGPMT+A L+ NT+  A
Sbjct: 242 K---KFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAA 283

Length = 294

>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  281 bits (720), Expect = 8e-95
 Identities = 157/289 (54%), Positives = 207/289 (71%), Gaps = 9/289 (3%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+K
Sbjct: 4   IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMK 62

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFH
Sbjct: 63  SVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFH 122

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
           P+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  
Sbjct: 123 PVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNE 180

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
           +ATVTI HS T D   + +EADI++ A G A  +K  +IKPGA VIDVG +  +++    
Sbjct: 181 NATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDENN---- 236

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
             +L GDVDF +  + AG +TPVPGGVGPMT+ MLL NTL  AKR+ ++
Sbjct: 237 --KLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWKM 283

Length = 284

>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  280 bits (718), Expect = 1e-94
 Identities = 144/285 (50%), Positives = 188/285 (65%), Gaps = 13/285 (4%)

Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
            I+DGKAV++     + EE+     + G  P LA VIVG    SQ YV MK +AC  VGI
Sbjct: 1   MILDGKAVSEKRLELLKEEI----IESGLYPRLATVIVGDDPASQMYVRMKHRACERVGI 56

Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
            S  I+LP   +   ++ ++  LN  PD++GILVQLPLPK ++ E+V+  I  EKDVDGF
Sbjct: 57  GSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGF 116

Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
           HPLN+G+L + G  P F PCTP G + LL    ++I GKRAVVVGRS  VG P++ LLL 
Sbjct: 117 HPLNLGRL-VSGL-PGFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLN 174

Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
           ADATVTI HS T + ++ +R+ADI+++AAG+A  I    +KPGA VIDVG N V+     
Sbjct: 175 ADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVNG---- 230

Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
              +L GDVDF    ++AG +TPVPGGVGPMT+A L+ NT D AK
Sbjct: 231 ---KLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAK 272

Length = 279

>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  276 bits (708), Expect = 5e-93
 Identities = 139/285 (48%), Positives = 183/285 (64%), Gaps = 8/285 (2%)

Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
            I+DGKA++  I+  + +EV  L      VPGLAV++VG    S +YV MK KAC  VGI
Sbjct: 2   QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGI 61

Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
            S   ++P  +S+ E++  +  +N  P++ GILVQLPLPKHI+  K+L  I  +KDVDGF
Sbjct: 62  YSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGF 121

Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
           HP N+G+L + G D  F+PCTP G +ELL+   + +KGK   VVG SNIVG P++ LLL 
Sbjct: 122 HPYNVGRL-VTGLDG-FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN 179

Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
           A+ATV I H  T D ++  ++ADIVI   G+  +I    +K GA VID+G N  +D    
Sbjct: 180 ANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG--- 236

Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
              RLVGDVDF    K    +TPVPGGVGPMT+AMLL NTL  AK
Sbjct: 237 ---RLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAK 278

Length = 281

>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  275 bits (704), Expect = 3e-92
 Identities = 127/294 (43%), Positives = 179/294 (60%), Gaps = 9/294 (3%)

Query: 4   PSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKA 63
               ++ IIDGKA+A+ I +E+   V  L    G  PGLA ++VG    S+ YV +K KA
Sbjct: 3   DESYESRIIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKA 62

Query: 64  CAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLE 123
           C  VGI++ D  LP   ++ EL+  +  LN   DVHGIL+QLPLPKH++ ++ +  I   
Sbjct: 63  CERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA 122

Query: 124 KDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPV 183
           KD DGFHP N+GKL M G D   +PCTP G +  L+  GV I+GK AV+VG SN+VG P+
Sbjct: 123 KDADGFHPYNMGKL-MIG-DEGLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPM 180

Query: 184 SLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAV 243
           + +LL  +ATV++ H  T D +    +ADI++ A G   +IK   +K GA + DVG    
Sbjct: 181 AAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKE 240

Query: 244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
           +D          GDVDF    K A  +TPVPGGVGP+T+AML+++ L  A++ +
Sbjct: 241 EDKV-------YGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEKSL 287

Length = 287

>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  266 bits (680), Expect = 8e-89
 Identities = 149/285 (52%), Positives = 190/285 (66%), Gaps = 8/285 (2%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           +IDGK +A  ++ E+A EVR L+ + G   GL VV VG    S  YV  KRK C EVGI 
Sbjct: 3   LIDGKQIAAKVKGEVATEVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGIT 61

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S +  LP   ++AEL++ +  LN  P VHGILVQLPLPKH++E  VL  IS  KD DGFH
Sbjct: 62  SVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFH 121

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
           P N+G L++ G   +  PCTP G + +L  + V  KGKRA+VVGRSNIVG P++++LL+ 
Sbjct: 122 PFNVGALSI-GIAGVPRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLER 180

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
            ATVTI HS T D    V  ADI++AA G+A ++KG+W+K GA VIDVG N + D     
Sbjct: 181 HATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG---- 236

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
             +LVGDV+F  A   A  +TPVPGGVGPMT AMLL NT++ AKR
Sbjct: 237 --KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKR 279

Length = 282

>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  263 bits (673), Expect = 1e-87
 Identities = 115/284 (40%), Positives = 173/284 (60%), Gaps = 9/284 (3%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           II+GK VA  I+ EI   V    E    +P +A ++VG    S  Y++ + K    +GI 
Sbjct: 4   IINGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGID 63

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
              I L E +SE +LI+++ ELN   +VHGI++QLPLPKH++E+K+  +I   KD+D   
Sbjct: 64  FKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLT 123

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
            +++GK      +  FLPCTP   + L+K   + I+GK  VV+GRSNIVG PV+ LLL  
Sbjct: 124 FISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNE 181

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
           +ATVTI HS T + + + ++ADI++ A G+   I   ++K GA VIDVGT++V+      
Sbjct: 182 NATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG----- 236

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
             ++ GDV+F +    A  +TPVPGGVG +T  +L++N  +  K
Sbjct: 237 --KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEALK 278

Length = 278

>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  262 bits (671), Expect = 2e-87
 Identities = 123/289 (42%), Positives = 180/289 (62%), Gaps = 9/289 (3%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A ++DGKA+A+ I  E++  V  L  K G+ P LA ++VG    S +YV MK  AC  VG
Sbjct: 3   ALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVG 62

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           + S  ++LP++ +  +L++K+ ELN  PDVHGIL+Q P+P  I+E      ISL KDVDG
Sbjct: 63  MDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDG 122

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
              L  G++AM   +  +   TP G + LLK   + + GK AVVVGRS I+G P++++LL
Sbjct: 123 VTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLL 180

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
            A+ATVTI HS T +   +V++ADI++ A G+  +IK  WIK GA V+D G +  D    
Sbjct: 181 NANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDGGG- 239

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
                 VGD++     ++A   TPVPGGVGPMT+  L+R T++ A++ +
Sbjct: 240 ------VGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEKAL 282

Length = 283

>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  260 bits (666), Expect = 1e-86
 Identities = 132/287 (45%), Positives = 197/287 (68%), Gaps = 9/287 (3%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A I+DGK +A+  R  + ++V  L EK G  P L+V++VG    SQSYV  K+KA  ++G
Sbjct: 3   AKILDGKQIAKDYRQGLQDQVEALKEK-GFTPKLSVILVGNDGASQSYVRSKKKAAEKIG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           + S  + L E  +E E++++++ LN    V GILVQ+PLPK ++E+K+L  I+ EKDVDG
Sbjct: 62  MISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP+NIGKL +   +  F+PCTP G +E+LK + + ++GK AVV+GRS+IVG PVS LLL
Sbjct: 122 FHPINIGKLYID--EQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLL 179

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
           + +A+VTI+HS + D  S +++AD++++A G+  ++    +K GA +IDVG N  D++ K
Sbjct: 180 QKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVG-NTPDENGK 238

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
                L GDVD+    ++AG +TPVPGGVGP+T+ M+L NTL   K 
Sbjct: 239 -----LKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKM 280

Length = 286

>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

 Score =  255 bits (653), Expect = 2e-86
 Identities = 95/166 (57%), Positives = 121/166 (72%), Gaps = 8/166 (4%)

Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
           HP+N+G+L +   +P F+PCTP+G +ELLKR G+ + GK  VV+GRSNIVG P++LLLL 
Sbjct: 1   HPINLGRLVL--GEPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58

Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
           A+ATVT+ HS T D   I READIV+ A G+  +IK  W+KPGA VIDVG N V+     
Sbjct: 59  ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113

Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
              +LVGDVDF    + A  +TPVPGGVGPMTVAMLL+NT++ AKR
Sbjct: 114 -NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKR 158

Length = 160

>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

 Score =  254 bits (652), Expect = 5e-86
 Identities = 101/172 (58%), Positives = 128/172 (74%), Gaps = 5/172 (2%)

Query: 123 EKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLP 182
           EKDVDG HP+N+G+LA+    P F+PCTP G LELLKR G+ + GK+ VVVGRSNIVG P
Sbjct: 2   EKDVDGLHPVNLGRLALG--RPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59

Query: 183 VSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNA 242
           ++ LLL  +ATVT+ HS T + +   ++ADIVI A G+  ++KG  +KPGA VIDVG N 
Sbjct: 60  LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119

Query: 243 VDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
           V D   KSG +LVGDVDF  A + A  +TPVPGGVGPMTVAML++NT++ AK
Sbjct: 120 VPD---KSGGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well as bifunctional m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains the bifunctional DH/cyclohydrolase. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. Length = 168

>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  258 bits (660), Expect = 1e-85
 Identities = 133/287 (46%), Positives = 178/287 (62%), Gaps = 9/287 (3%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A  + G   A+ + +E+   +  L      VP L VV +G    S SYV +K +    +G
Sbjct: 3   ARELSGPPAAEAVYAELRARLAKLPF----VPHLRVVRLGEDPASVSYVRLKDRQAKALG 58

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           ++S    LPE  S+ EL+  +  LN  P+V GILVQLPLP HI+ ++VL  I   KDVDG
Sbjct: 59  LRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDG 118

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHPLN+G+L M G + L  PCTP G + LLK  G+ + GK  VVVGRSNIVG P++ LLL
Sbjct: 119 FHPLNVGRLWM-GGEALE-PCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLL 176

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
           + DATVT+ HS T D  ++ R AD+++ A G+  +I    ++PGA V+DVG N V  +  
Sbjct: 177 REDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGGNGG 236

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
           +    L GDV   E  +VAG +TPVPGGVGPMTVAML+ NT+  A R
Sbjct: 237 RD--ILTGDVH-PEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALR 280

Length = 287

>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  253 bits (648), Expect = 6e-84
 Identities = 133/289 (46%), Positives = 186/289 (64%), Gaps = 8/289 (2%)

Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
           T++DGKA++  I+ E+ E+ + L  K G    LAV++VG    SQ+YV  K KAC E GI
Sbjct: 2   TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGI 60

Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
           KS    L E  ++ EL++ ++ LN    VHGILVQLPLP HI ++ +L  I   KDVDGF
Sbjct: 61  KSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGF 120

Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
           HP+N+G L + G +  FLPCTP G ++LLK   + ++GK AV++G SNIVG P++ +LL 
Sbjct: 121 HPINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN 179

Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
           A ATV++ H  T D     R+AD++I AAG   +++   +K G  V+DVG N ++     
Sbjct: 180 AGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG--- 236

Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
              ++VGDVDF E  K +  +TPVPGGVGPMT+AMLL NT+  AK  + 
Sbjct: 237 ---KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRLN 282

Length = 282

>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  246 bits (629), Expect = 6e-81
 Identities = 124/287 (43%), Positives = 179/287 (62%), Gaps = 7/287 (2%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           IIDGKA+A  I +++  E++ L  +    P LA+V+VG    S  YV  K K   ++GI 
Sbjct: 4   IIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGID 63

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           +  ++L   +   +LISK++ELN+  ++ GI+VQLPLP  I++ K+L  +S  KD+DGFH
Sbjct: 64  TLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFH 123

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
           PLN+G L   G    F+PCT  GCL ++K+    + GK  V++GRSNIVG P+S LLLK 
Sbjct: 124 PLNVGYL-HSGISQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKE 182

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
           + +VTI HS T +  SI  +ADIV+AA G  + +   +  P + VIDVG N +      S
Sbjct: 183 NCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRI------S 236

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
           G +++GDVDF         +TPVPGG+GPMT+A LL+NT+   K  +
Sbjct: 237 GNKIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFKDSL 283

Length = 288

>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  245 bits (627), Expect = 1e-80
 Identities = 128/289 (44%), Positives = 182/289 (62%), Gaps = 10/289 (3%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           ++ G   A+ I + I E +   S      PGLAVV++G    S+ YV MK K   ++G+ 
Sbjct: 2   LLKGAPAAEHILATIKENISASS----TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMV 57

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S    LP   + ++++  +H LN  P++HGILVQLPLPKH++ + +L  IS +KDVDG H
Sbjct: 58  SKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLH 117

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK- 189
           P+N+GKL + G    F+PCTP G +ELLK   + + G+   +VGRSNIVG P++ LL++ 
Sbjct: 118 PVNMGKLLL-GETDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQK 176

Query: 190 ---ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
               +ATVT++HS + +   I++ ADI+IAA G  + IK   I   A ++DVGT+ V  +
Sbjct: 177 HPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVPAA 236

Query: 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
             K GY LVGDVDF+        +TPVPGGVGPMTVAML+RNT +   R
Sbjct: 237 NPK-GYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLR 284

Length = 287

>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  242 bits (618), Expect = 2e-79
 Identities = 133/287 (46%), Positives = 177/287 (61%), Gaps = 8/287 (2%)

Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
            +IDGK++++ ++  +A +V+         P L  +IVG    S++YV+ K KACA+VGI
Sbjct: 2   ILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGI 61

Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
            S  I LPE  +E+EL+  + +LN    VH ILVQLPLP HIN+  V+  I  EKDVDGF
Sbjct: 62  DSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGF 121

Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
           HP N+G+L ++ +  L   CTPKG + +L+  G+  +G  AVVVG SN+VG PVS LLL 
Sbjct: 122 HPTNVGRLQLRDKKCL-ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN 180

Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
           A ATVT  H  TTD +S   +ADI+I A G+   I    +K GA VIDVG N VD     
Sbjct: 181 AKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG---- 236

Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296
              ++VGDVDF         +TPVPGGVGPMT+  LL NT   A+ +
Sbjct: 237 ---KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQEL 280

Length = 282

>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  238 bits (608), Expect = 7e-78
 Identities = 124/287 (43%), Positives = 182/287 (63%), Gaps = 9/287 (3%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           AT +DG+AV++ I +++ + V  L+++    P LAVV+VG    S+ YV  K++   ++G
Sbjct: 1   ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIG 59

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           ++S    LPE  ++A+L++KV ELN  PDV  ILVQLPLP  ++E+ V+  I  +KDVDG
Sbjct: 60  VRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDG 119

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           F P+++G+L     +P  +  TP G + LL    + + GKR V+VGRSNIVG P++ L++
Sbjct: 120 FSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMV 177

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
             DATVTI HS T + + + +EADI++ A G    I    +KPGA VIDVG +   D   
Sbjct: 178 NHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGADG-- 235

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               +L+GDVD      +A  +TPVPGGVGPMT+A L+  T+  AKR
Sbjct: 236 ----KLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKR 278

Length = 282

>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  235 bits (600), Expect = 9e-77
 Identities = 127/284 (44%), Positives = 179/284 (63%), Gaps = 12/284 (4%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           ++DGK +++ IR+EI E +     K  ++P LA ++VG    S++YVSMK KAC +VG+ 
Sbjct: 5   LLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMG 64

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S  I L EQ +  EL+  + +LN+ P+V GIL+Q P+P  I+E      I+LEKDVDG  
Sbjct: 65  SEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVT 124

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
            L+ GKL+M      +LPCTP G + LLK  G+ + GK AVVVGRS I+G P+++LL + 
Sbjct: 125 TLSFGKLSMGVE--TYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEM 182

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
           +ATVT+ HS T +  SIVR+ADI++ A G+   IK  WI  GA ++D G N  +      
Sbjct: 183 NATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNPGN------ 236

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
               VGD++  +A   +   TPVPGGVGPMT+A+LL  TL   K
Sbjct: 237 ----VGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFK 276

Length = 284

>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain

 Score =  164 bits (417), Expect = 3e-51
 Identities = 66/118 (55%), Positives = 83/118 (70%), Gaps = 1/118 (0%)

Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
            I+DGKA+A+ I+ E+ EEV  L EK G  P LAV++VG    SQ YV  KRKA  E+GI
Sbjct: 1   KILDGKALAKKIKEELKEEVAKLKEK-GITPKLAVILVGDDPASQVYVRSKRKAAEELGI 59

Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
           +S  I LPE ++E EL++ + +LN  P VHGILVQLPLPKHI+E K+L  I  EKDVD
Sbjct: 60  ESELIRLPEDITEEELLALIEKLNADPSVHGILVQLPLPKHIDENKILNAIDPEKDVD 117

Length = 117

>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

 Score =  107 bits (270), Expect = 3e-29
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 22/155 (14%)

Query: 147 LPCTPKGC-------LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199
            PCTP           ELL + GV + GK+ +VVGRS IVG P+  LL +  ATV     
Sbjct: 1   GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60

Query: 200 HTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVD 259
            T   +S V +AD+V+  + +   +   WIKPGA VI+     +                
Sbjct: 61  KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPTKLSGD------------- 107

Query: 260 FHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
             +  + A    P+ GGVG +TVAM ++N +   +
Sbjct: 108 --DVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, mono-functional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express a monofunctional DH. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 140

>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of methylene-tetrahydrofolate dehydrogenase

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 54/208 (25%), Positives = 74/208 (35%), Gaps = 58/208 (27%)

Query: 122 LEKDVDGFHPLNIGKLAMKGR--DP-----LFLPCTPKG---CLELLK------RSGVTI 165
             KDV+G     I  L    R  DP       LPCTP      LE L         G  +
Sbjct: 1   PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRL 60

Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIV-----------------HSHTTDPESIV 208
            GK   ++ RS +VG P++ LL    A V  V                   H TD E++ 
Sbjct: 61  YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMT 120

Query: 209 RE----ADIVIAAAGQA-MMIKGSWIKPGAAVIDV-GTNAVDDSTKKSGYRLVGDVDFHE 262
            +    +D+VI         +    +K GA  I+       + S K+             
Sbjct: 121 LDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFEPSVKEK------------ 168

Query: 263 ACKVAGCVTPVPGGVGPMTVAMLLRNTL 290
               A    P    +G +T+AMLLRN L
Sbjct: 169 ----ASIYVPS---IGKVTIAMLLRNLL 189

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional DHs from S. cerevisiae and certain bacteria. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 197

>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 201 TTDPESIVREADIVIAA-AGQAMMIKGSWIKPGAAVIDVGTNA-----VDDSTKKSGYRL 254
               E  V  ADIV+ A      ++K  W+KPG  +  +G +A     +D        R+
Sbjct: 186 ADSAEEAVEGADIVVTATPSTEPVLKAEWLKPGTHINAIGADAPGKRELDPEVLARADRV 245

Query: 255 VGDVDFHEACKV-AG--CVTPVPGGVGPMTVAMLLRNTLDGAKRV 296
           V  VD  E  +  +G        G + P  +   L + + G    
Sbjct: 246 V--VDSLEQTRKESGEISQAVAAGVLSPDAIVAELGDVVAGKIPG 288

Length = 330

>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 19/98 (19%)

Query: 149 CTPKGCLELLKRSGV----TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP 204
            T  G + LLK +G     ++KGK  VV+G   +      LL  +    V +        
Sbjct: 1   ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR----- 55

Query: 205 ESIVREADIVIAAAGQAMMIKG---SWIKPGAAVIDVG 239
                  DI++ A    + +     + I  GA VID+ 
Sbjct: 56  -------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 86

>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 17/97 (17%)

Query: 193 TVTIVHSHTTDPESIVREADIVIAAAGQAM-------MIKGSWIKPGAAVIDVGTNAVDD 245
            V +V S     E +VR +DIV                +K  W+KPGA ++      +D+
Sbjct: 210 NVEVVDSI----EEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRIDE 265

Query: 246 STKKSGYRLVGDVD------FHEACKVAGCVTPVPGG 276
             ++   R V D        F E  K A  + PV G 
Sbjct: 266 GMEQGDVRKVVDNTGLYEAWFEEVPKPAHNLIPVIGV 302

Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	100.0
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	100.0
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	100.0
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	100.0
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	100.0
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
KOG0089	309	consensus Methylenetetrahydrofolate dehydrogenase/	100.0
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	100.0
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	100.0
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	100.0
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	100.0
PF00763	117	THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cycloh	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	99.9
PRK12548	289	shikimate 5-dehydrogenase; Provisional	99.89
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	99.89
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	99.89
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	99.89
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	99.89
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	99.88
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	99.87
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	99.87
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	99.82
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	99.81
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.61
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.5
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	99.19
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.18
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	99.16
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.13
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.1
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	99.0
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.91
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.9
PRK14982	340	acyl-ACP reductase; Provisional	98.78
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.78
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.7
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.65
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.56
PLN00203	519	glutamyl-tRNA reductase	98.52
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.5
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.48
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.47
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.45
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.45
COG5322	351	Predicted dehydrogenase [General function predicti	98.43
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.41
PLN02494	477	adenosylhomocysteinase	98.38
PLN02928	347	oxidoreductase family protein	98.34
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.31
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.26
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.22
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.17
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.14
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.11
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.05
PRK13243	333	glyoxylate reductase; Reviewed	98.03
PRK06436	303	glycerate dehydrogenase; Provisional	97.97
PRK06932	314	glycerate dehydrogenase; Provisional	97.96
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	97.94
PRK06487	317	glycerate dehydrogenase; Provisional	97.93
PRK07574	385	formate dehydrogenase; Provisional	97.92
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.92
PRK12480	330	D-lactate dehydrogenase; Provisional	97.91
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.91
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.9
PRK12862	763	malic enzyme; Reviewed	97.9
PRK08605	332	D-lactate dehydrogenase; Validated	97.88
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.88
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	97.85
PRK08618	325	ornithine cyclodeaminase; Validated	97.83
PLN02306	386	hydroxypyruvate reductase	97.81
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.81
PRK08291	330	ectoine utilization protein EutC; Validated	97.8
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.8
PLN03139	386	formate dehydrogenase; Provisional	97.78
PRK06141	314	ornithine cyclodeaminase; Validated	97.74
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.72
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.72
COG0281	432	SfcA Malic enzyme [Energy production and conversio	97.71
PRK07340	304	ornithine cyclodeaminase; Validated	97.71
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.71
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.7
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.66
PRK12861	764	malic enzyme; Reviewed	97.63
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.59
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.5
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	97.47
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.44
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.43
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.42
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.37
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.32
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.29
PRK14804	311	ornithine carbamoyltransferase; Provisional	97.29
PRK06823	315	ornithine cyclodeaminase; Validated	97.24
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.23
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.2
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.16
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.13
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.12
PLN02712	667	arogenate dehydrogenase	97.12
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	97.1
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.1
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.1
PRK07589	346	ornithine cyclodeaminase; Validated	97.06
PRK06407	301	ornithine cyclodeaminase; Provisional	97.06
PRK13403	335	ketol-acid reductoisomerase; Provisional	97.06
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.05
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.04
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.04
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	97.01
PRK01713	334	ornithine carbamoyltransferase; Provisional	97.0
PLN02256	304	arogenate dehydrogenase	96.98
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.97
PRK06046	326	alanine dehydrogenase; Validated	96.96
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.96
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.96
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.95
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.9
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.86
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.84
PRK14805	302	ornithine carbamoyltransferase; Provisional	96.84
PRK02102	331	ornithine carbamoyltransferase; Validated	96.83
PRK14031	444	glutamate dehydrogenase; Provisional	96.8
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.8
PRK08818	370	prephenate dehydrogenase; Provisional	96.8
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.79
PRK13529	563	malate dehydrogenase; Provisional	96.77
PLN02342	348	ornithine carbamoyltransferase	96.75
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.74
PRK07417	279	arogenate dehydrogenase; Reviewed	96.72
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.71
PRK06545	359	prephenate dehydrogenase; Validated	96.71
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.7
PRK11891	429	aspartate carbamoyltransferase; Provisional	96.69
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.66
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.65
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.63
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.62
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.61
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.58
PLN02527	306	aspartate carbamoyltransferase	96.55
PLN03129	581	NADP-dependent malic enzyme; Provisional	96.53
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.51
PTZ00317	559	NADP-dependent malic enzyme; Provisional	96.51
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.5
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.5
PRK08655	437	prephenate dehydrogenase; Provisional	96.48
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.46
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.44
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.43
PRK08192	338	aspartate carbamoyltransferase; Provisional	96.38
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.37
PRK08507	275	prephenate dehydrogenase; Validated	96.36
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.35
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.35
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.33
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.31
PRK09414	445	glutamate dehydrogenase; Provisional	96.29
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.28
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.27
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	96.25
PLN02688	266	pyrroline-5-carboxylate reductase	96.25
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.23
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.23
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.22
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.2
PRK14030	445	glutamate dehydrogenase; Provisional	96.19
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.17
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.17
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.17
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.16
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.11
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	96.07
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.07
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.01
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.98
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.94
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	95.93
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.92
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.9
PRK06199	379	ornithine cyclodeaminase; Validated	95.89
PRK06949	258	short chain dehydrogenase; Provisional	95.85
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.85
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.84
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.83
PLN02712	667	arogenate dehydrogenase	95.81
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.8
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	95.79
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.78
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.75
PLN02477	410	glutamate dehydrogenase	95.74
PLN02858	1378	fructose-bisphosphate aldolase	95.74
PRK06398	258	aldose dehydrogenase; Validated	95.73
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.69
PLN02383	344	aspartate semialdehyde dehydrogenase	95.68
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.61
PTZ00117	319	malate dehydrogenase; Provisional	95.58
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.58
PRK07680	273	late competence protein ComER; Validated	95.57
PRK09072	263	short chain dehydrogenase; Provisional	95.54
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.52
PRK12367	245	short chain dehydrogenase; Provisional	95.5
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.48
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.43
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.41
PRK12828	239	short chain dehydrogenase; Provisional	95.39
PRK08862	227	short chain dehydrogenase; Provisional	95.36
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.36
PRK10637	457	cysG siroheme synthase; Provisional	95.35
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	95.33
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.32
PLN02858	1378	fructose-bisphosphate aldolase	95.31
PRK06523	260	short chain dehydrogenase; Provisional	95.3
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.29
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.28
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	95.28
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.24
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.22
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.18
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	95.18
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	95.15
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.13
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.12
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.1
PRK08339	263	short chain dehydrogenase; Provisional	95.1
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.08
PRK05866	293	short chain dehydrogenase; Provisional	95.07
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	95.07
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.07
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	95.05
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.04
PRK07062	265	short chain dehydrogenase; Provisional	95.04
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.04
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.04
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.03
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	94.97
PRK05717	255	oxidoreductase; Validated	94.97
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	94.97
PRK07063	260	short chain dehydrogenase; Provisional	94.95
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.93
PRK06138	252	short chain dehydrogenase; Provisional	94.93
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	94.91
PRK08628	258	short chain dehydrogenase; Provisional	94.9
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	94.9
PRK08265	261	short chain dehydrogenase; Provisional	94.9
PRK05867	253	short chain dehydrogenase; Provisional	94.9
PRK08223	287	hypothetical protein; Validated	94.9
PLN02514	357	cinnamyl-alcohol dehydrogenase	94.89
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	94.89
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	94.88
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	94.88
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.88
PRK06172	253	short chain dehydrogenase; Provisional	94.87
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.86
PRK06057	255	short chain dehydrogenase; Provisional	94.86
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.83
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.79
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.79
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.77
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.77
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.75
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.75
PRK07890	258	short chain dehydrogenase; Provisional	94.71
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.68
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.66
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.66
PRK12829	264	short chain dehydrogenase; Provisional	94.65
PRK08213	259	gluconate 5-dehydrogenase; Provisional	94.62
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	94.61
PRK09186	256	flagellin modification protein A; Provisional	94.61
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	94.61
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.6
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.59
PRK05872	296	short chain dehydrogenase; Provisional	94.59
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.58
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	94.56
PLN02178	375	cinnamyl-alcohol dehydrogenase	94.54
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	94.54
PRK08703	239	short chain dehydrogenase; Provisional	94.53
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	94.5
PRK07060	245	short chain dehydrogenase; Provisional	94.49
PRK06223	307	malate dehydrogenase; Reviewed	94.48
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.48
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	94.47
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.46
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.45
PRK06841	255	short chain dehydrogenase; Provisional	94.44
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.42
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	94.41
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.41
PRK06125	259	short chain dehydrogenase; Provisional	94.4
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.4
PRK08264	238	short chain dehydrogenase; Validated	94.39
PRK05854	313	short chain dehydrogenase; Provisional	94.39
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	94.39
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	94.38
PRK07097	265	gluconate 5-dehydrogenase; Provisional	94.38
PRK09242	257	tropinone reductase; Provisional	94.38
PRK06196	315	oxidoreductase; Provisional	94.37
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.35
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	94.3
PRK05876	275	short chain dehydrogenase; Provisional	94.29
PRK07774	250	short chain dehydrogenase; Provisional	94.28
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	94.27
CHL00194	317	ycf39 Ycf39; Provisional	94.27
KOG0725	270	consensus Reductases with broad range of substrate	94.25
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.25
PRK07478	254	short chain dehydrogenase; Provisional	94.24
PRK06194	287	hypothetical protein; Provisional	94.22
PRK07035	252	short chain dehydrogenase; Provisional	94.22
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	94.21
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	94.21
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	94.2
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.2
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.19
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.18
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	94.18
PRK07576	264	short chain dehydrogenase; Provisional	94.16
PRK07825	273	short chain dehydrogenase; Provisional	94.13
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.12
PRK08277	278	D-mannonate oxidoreductase; Provisional	94.12
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.12
PRK06179	270	short chain dehydrogenase; Provisional	94.11
PLN02427	386	UDP-apiose/xylose synthase	94.11
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.1
PRK09291	257	short chain dehydrogenase; Provisional	94.09
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.09
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	94.07
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	94.05
PRK07856	252	short chain dehydrogenase; Provisional	94.03
COG2910	211	Putative NADH-flavin reductase [General function p	94.03
PRK08589	272	short chain dehydrogenase; Validated	94.02
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.02
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.01
PRK07067	257	sorbitol dehydrogenase; Provisional	94.01
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.98
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	93.96
PRK06500	249	short chain dehydrogenase; Provisional	93.96
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.96
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.95
PRK07814	263	short chain dehydrogenase; Provisional	93.95
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	93.95
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.92
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.9
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.89
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.89
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	93.88
PRK06114	254	short chain dehydrogenase; Provisional	93.86
PRK06444	197	prephenate dehydrogenase; Provisional	93.86
PLN00106	323	malate dehydrogenase	93.86
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	93.85
PLN00198	338	anthocyanidin reductase; Provisional	93.84
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	93.82
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.79
PRK06139	330	short chain dehydrogenase; Provisional	93.79
PRK12742	237	oxidoreductase; Provisional	93.78
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.77
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.74
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.73
PRK12939	250	short chain dehydrogenase; Provisional	93.72
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	93.71
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.71
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.66
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	93.63
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	93.63
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.62
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	93.61
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.59
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.59
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	93.56
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	93.56
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.56
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	93.54
PRK05875	276	short chain dehydrogenase; Provisional	93.54
PRK07326	237	short chain dehydrogenase; Provisional	93.54
KOG0409	327	consensus Predicted dehydrogenase [General functio	93.52
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.51
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.48
PRK05225	487	ketol-acid reductoisomerase; Validated	93.44
PRK06198	260	short chain dehydrogenase; Provisional	93.44
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.42
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.4
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.39
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	93.39
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.37
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	93.37
PRK12937	245	short chain dehydrogenase; Provisional	93.36
PLN02214	342	cinnamoyl-CoA reductase	93.36
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.35
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	93.35
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.33
PRK05086	312	malate dehydrogenase; Provisional	93.32
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	93.32
PLN02778	298	3,5-epimerase/4-reductase	93.31
PRK06197	306	short chain dehydrogenase; Provisional	93.3
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	93.29
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.29
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	93.29
PLN02253	280	xanthoxin dehydrogenase	93.28
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.27
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.26
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.26
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	93.24
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	93.23
PRK08643	256	acetoin reductase; Validated	93.23
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.22
PRK12827	249	short chain dehydrogenase; Provisional	93.18
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.16
PLN03209	576	translocon at the inner envelope of chloroplast su	93.15
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.09
PRK08278	273	short chain dehydrogenase; Provisional	93.08
PRK09135	249	pteridine reductase; Provisional	93.08
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	93.07
PRK08226	263	short chain dehydrogenase; Provisional	93.04
PRK06914	280	short chain dehydrogenase; Provisional	93.01
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.01
PRK07109	334	short chain dehydrogenase; Provisional	93.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.98
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	92.94
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.93
PRK07806	248	short chain dehydrogenase; Provisional	92.93
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	92.93
PRK05993	277	short chain dehydrogenase; Provisional	92.93
PRK07577	234	short chain dehydrogenase; Provisional	92.93
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	92.92
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.91
PRK07677	252	short chain dehydrogenase; Provisional	92.87
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.86
PLN02602	350	lactate dehydrogenase	92.82
PRK06701	290	short chain dehydrogenase; Provisional	92.81
PRK08263	275	short chain dehydrogenase; Provisional	92.8
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	92.8
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.79
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	92.79
PRK06182	273	short chain dehydrogenase; Validated	92.78
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	92.76
PRK08303	305	short chain dehydrogenase; Provisional	92.75
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	92.73
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.71
PRK08267	260	short chain dehydrogenase; Provisional	92.68
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	92.68
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	92.67
PLN02653	340	GDP-mannose 4,6-dehydratase	92.67
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	92.64
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	92.61
PRK07985	294	oxidoreductase; Provisional	92.58
PRK12744	257	short chain dehydrogenase; Provisional	92.54
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	92.49
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	92.48
PRK05442	326	malate dehydrogenase; Provisional	92.46
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.45
PRK06720	169	hypothetical protein; Provisional	92.44
PRK12779	944	putative bifunctional glutamate synthase subunit b	92.44
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	92.43
PRK07411	390	hypothetical protein; Validated	92.43
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	92.42
PRK07791	286	short chain dehydrogenase; Provisional	92.41
PRK07831	262	short chain dehydrogenase; Provisional	92.41
KOG1504	346	consensus Ornithine carbamoyltransferase OTC/ARG3	92.4
PLN02740	381	Alcohol dehydrogenase-like	92.38
PRK12743	256	oxidoreductase; Provisional	92.35
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	92.34
PRK08177	225	short chain dehydrogenase; Provisional	92.33
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	92.33
PRK06128	300	oxidoreductase; Provisional	92.28
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	92.28
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	92.28
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	92.25
PRK06483	236	dihydromonapterin reductase; Provisional	92.24

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=100.00  E-value=1e-96  Score=678.18  Aligned_cols=281  Identities=58%  Similarity=0.902  Sum_probs=273.9

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++||||++|+++++++++++++|+++.++.|+|++|+||+||+|+.|+++|.|+|+++|+.++.++||++++|+||++.|
T Consensus         1 ~~idGk~lA~~i~~~lk~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I   80 (283)
T COG0190           1 MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALI   80 (283)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHH
Confidence            47999999999999999999999987789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|+||||||||+|.|+|+.+  +++|+||||.|++++|++|++++.||+
T Consensus        81 ~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~--~~~~~PCTp~gi~~ll~~~~i~l~Gk~  158 (283)
T COG0190          81 DELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQG--EPGFLPCTPAGIMTLLEEYGIDLRGKN  158 (283)
T ss_pred             HHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999987  788999999999999999999999999


Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK  249 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~  249 (299)
                      ++|||||++||||++++|+++|||||+|||+|+|+.+++++|||||+|+|+|+|+++||+|||++|||+|+|+.++.   
T Consensus       159 ~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDVGinrv~~~---  235 (283)
T COG0190         159 VVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVNDG---  235 (283)
T ss_pred             EEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCccccccccccCCCEEEecCCccccCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998652   


Q ss_pred             CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                         |+||||||+++++++++||||||||||||++|||+|++++++++.+
T Consensus       236 ---kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~~  281 (283)
T COG0190         236 ---KLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRG  281 (283)
T ss_pred             ---ceEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence               8999999999999999999999999999999999999999998754

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=100.00  E-value=2.5e-96  Score=685.49  Aligned_cols=298  Identities=86%  Similarity=1.277  Sum_probs=285.0

Q ss_pred             CCCCccccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCC
Q 022295            1 MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV   80 (299)
Q Consensus         1 ~~~~~~~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~   80 (299)
                      |+.|...|+++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||+++
T Consensus         1 ~~~~~~~~~~ildGk~vA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~   80 (299)
T PLN02516          1 MASPSDHVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENI   80 (299)
T ss_pred             CCCCccccCeEeehHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence            78899999999999999999999999999999888789999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHh
Q 022295           81 SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKR  160 (299)
Q Consensus        81 ~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~  160 (299)
                      +|+||++.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+..++|+||||+||+++|++
T Consensus        81 s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~  160 (299)
T PLN02516         81 SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSR  160 (299)
T ss_pred             CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998643578999999999999999


Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeec
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT  240 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~  240 (299)
                      |+++++||+|+|||||.+||||+++||+++|||||+|||+|+++++++++|||||+|+|+|++++++|||||++|||+|+
T Consensus       161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvGi  240 (299)
T PLN02516        161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGT  240 (299)
T ss_pred             hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       241 ~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      |+.+++..++|.++||||||+++.++++++|||||||||||++|||+|+++++++|+.
T Consensus       241 n~~~~~~~~~g~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~~  298 (299)
T PLN02516        241 NAVSDPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVFA  298 (299)
T ss_pred             cccCcccccCCCceEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            9975432223447999999999999999999999999999999999999999999974

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=100.00  E-value=1.8e-96  Score=697.37  Aligned_cols=293  Identities=64%  Similarity=1.070  Sum_probs=279.6

Q ss_pred             cccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHH
Q 022295            6 DQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL   85 (299)
Q Consensus         6 ~~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el   85 (299)
                      .+++++||||++|++|++++++++++|+++.|++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||
T Consensus        70 ~~~~~ildGk~iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~el  149 (364)
T PLN02616         70 EGGAKVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEV  149 (364)
T ss_pred             cccCeEeEhHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence            44678999999999999999999999998878999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCc
Q 022295           86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTI  165 (299)
Q Consensus        86 ~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l  165 (299)
                      ++.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+..++|+||||+||+++|++|++++
T Consensus       150 l~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i~l  229 (364)
T PLN02616        150 LKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEI  229 (364)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999864457899999999999999999999


Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~  245 (299)
                      +||+|+|||||++||+|+++||+++|||||+|||+|+|+.+++++|||||+|+|+|++|+++|||||++|||+|+|+.++
T Consensus       230 ~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDVGIn~~~~  309 (364)
T PLN02616        230 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVED  309 (364)
T ss_pred             CCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEecccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999754


Q ss_pred             CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +++++|+|+||||||+++.+++++||||||||||||++|||+|++++++++.+
T Consensus       310 ~~~~~g~klvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~~  362 (364)
T PLN02616        310 ASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHN  362 (364)
T ss_pred             ccccCCCeEEecCcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence            33333558999999999999999999999999999999999999999988764

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=100.00  E-value=2.5e-96  Score=693.89  Aligned_cols=292  Identities=62%  Similarity=1.027  Sum_probs=279.1

Q ss_pred             cccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHH
Q 022295            6 DQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL   85 (299)
Q Consensus         6 ~~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el   85 (299)
                      .+|+++||||++|++|+++++++++.|+++.+++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||
T Consensus        53 ~~~~~ildGk~vA~~i~~~lk~~v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~el  132 (345)
T PLN02897         53 EQKTVVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQI  132 (345)
T ss_pred             cccceEeehHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHH
Confidence            34688999999999999999999999988778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCc
Q 022295           86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTI  165 (299)
Q Consensus        86 ~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l  165 (299)
                      ++.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+..++|+||||+||+++|++|++++
T Consensus       133 l~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i~l  212 (345)
T PLN02897        133 LSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEI  212 (345)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999864447899999999999999999999


Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~  245 (299)
                      +||+|+|||||++||+|+|+||+++|||||+||++|+|+.+++++|||||+|+|+|++|+++|||||++|||+|+|+.++
T Consensus       213 ~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDVGin~~~~  292 (345)
T PLN02897        213 AGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVED  292 (345)
T ss_pred             CCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999754


Q ss_pred             CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      ++.++|+|++|||||+++.+++++||||||||||||++|||+|+++++++|.
T Consensus       293 ~~~~~g~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~~  344 (345)
T PLN02897        293 SSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIF  344 (345)
T ss_pred             ccccCCCeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHhc
Confidence            3333355899999999999999999999999999999999999999999885

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=5.3e-96  Score=680.23  Aligned_cols=283  Identities=43%  Similarity=0.739  Sum_probs=273.9

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      |+++||||++|++|++++++++++|+++.+++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         1 ~~~il~Gk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~   80 (288)
T PRK14171          1 MNNIIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLIS   80 (288)
T ss_pred             CCeEeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            57899999999999999999999998877899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+ .++|+||||+||+++|++|+++++|
T Consensus        81 ~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~av~~lL~~y~i~l~G  159 (288)
T PRK14171         81 KINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGI-SQGFIPCTALGCLAVIKKYEPNLTG  159 (288)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCC-CCCCcCCCHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999999999999999999999999999999873 3789999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      |+|+|||||++||+|+++||+++|||||+|||+|+|+++++++|||||+|+|+|++|+++|||||++|||+|+|+..+  
T Consensus       160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDvGin~~~~--  237 (288)
T PRK14171        160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRISG--  237 (288)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCEEEEeeccccCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999643  


Q ss_pred             cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                         | |++|||||+++++++++||||||||||||++|||+|+++++++.+
T Consensus       238 ---g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~  283 (288)
T PRK14171        238 ---N-KIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFKDSL  283 (288)
T ss_pred             ---C-CeECCccHHHHHhhceEeCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence               2 799999999999999999999999999999999999999998654

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.2e-95  Score=676.78  Aligned_cols=282  Identities=55%  Similarity=0.891  Sum_probs=274.0

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      |+++|+||++|++++++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         1 ~~~il~Gk~iA~~i~~~ik~~i~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~   79 (284)
T PRK14170          1 MGEIIDGKKLAKEIQEKVTREVAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLS   79 (284)
T ss_pred             CCeEEEhHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            6889999999999999999999999877 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++|
T Consensus        80 ~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~G  157 (284)
T PRK14170         80 VVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIG--KDSFVPCTPAGIIELIKSTGTQIEG  157 (284)
T ss_pred             HHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999987  5789999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      |+|+|||||++||+|+++||+++|||||+|||+|+|+++++++|||||+|+|+|++|+++|||||++|||+|+|+.++  
T Consensus       158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDvGin~~~~--  235 (284)
T PRK14170        158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDEN--  235 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998643  


Q ss_pred             cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                         | |++|||||+++.++++++|||||||||||++|||+|+++++++++.
T Consensus       236 ---g-kl~GDvdfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~  282 (284)
T PRK14170        236 ---N-KLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWK  282 (284)
T ss_pred             ---C-CeecccchHHHHhhccEecCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence               2 7999999999999999999999999999999999999999998764

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.1e-95  Score=679.26  Aligned_cols=293  Identities=49%  Similarity=0.801  Sum_probs=277.7

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      ||+++||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         1 m~~~ildGk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~   80 (297)
T PRK14168          1 MSAKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELL   80 (297)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            45779999999999999999999999887789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+..++|+||||+||+++|++|+++++
T Consensus        81 ~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~  160 (297)
T PRK14168         81 ALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETS  160 (297)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999999999998854468999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhhC----CCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKA----DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~----gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~  242 (299)
                      ||+|+|||||++||+|+++||+++    |||||+|||+|+++++++++|||||+|+|+|++++++|||||++|||+|+|+
T Consensus       161 Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVIDvGin~  240 (297)
T PRK14168        161 GAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNR  240 (297)
T ss_pred             CCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEecCCCc
Confidence            999999999999999999999998    8999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhcC
Q 022295          243 VDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL  299 (299)
Q Consensus       243 ~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~~  299 (299)
                      ..+....++++++|||||+++.+++++||||||||||||++|||+|+++++++|++|
T Consensus       241 ~~~~~~~g~~~~~GDVdfe~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~  297 (297)
T PRK14168        241 VGTNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLSL  297 (297)
T ss_pred             cCccccCCCcceeccccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            632111111249999999999999999999999999999999999999999999986

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.1e-95  Score=675.70  Aligned_cols=286  Identities=50%  Similarity=0.804  Sum_probs=274.1

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++||||++|++|+++++++++.|+++.+++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus         2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I   81 (293)
T PRK14185          2 QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKV   81 (293)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999999999988789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|  .++|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~GK~  159 (293)
T PRK14185         82 RELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKK  159 (293)
T ss_pred             HHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999987  578999999999999999999999999


Q ss_pred             EEEEcCCccchHHHHHHHhhC----CCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKA----DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~----gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~  245 (299)
                      |+|||||++||+|+++||+++    |||||+|||+|+|+.+++++|||||+|+|+|++|+++|||||++|||+|+|+.++
T Consensus       160 vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~~  239 (293)
T PRK14185        160 CVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPD  239 (293)
T ss_pred             EEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecCccccc
Confidence            999999999999999999998    7999999999999999999999999999999999999999999999999999754


Q ss_pred             CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      +..++|+|++|||||+++.+++++||||||||||||++|||+|+++++++..
T Consensus       240 ~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  291 (293)
T PRK14185        240 ATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKAI  291 (293)
T ss_pred             ccccCCCeeEcCCCHHHHHhhccEeCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            3333344899999999999999999999999999999999999999998654

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=6.5e-95  Score=674.60  Aligned_cols=287  Identities=46%  Similarity=0.720  Sum_probs=274.8

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      |+++||||++|++|+++++++++.|++++|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++
T Consensus         1 ~~~ildGk~va~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~   80 (294)
T PRK14187          1 ETNIIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIE   80 (294)
T ss_pred             CcEEeehHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            57899999999999999999999998777899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|+..++|+||||+||+++|++|+++++|
T Consensus        81 ~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i~l~G  160 (294)
T PRK14187         81 KINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSG  160 (294)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999988533689999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      |+|+|||||++||+|+++||+++|||||+|||+|+|+.+++++|||||+|+|+|+|++++|||+|++|||+|+|+.+++.
T Consensus       161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDVGin~~~~~~  240 (294)
T PRK14187        161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGG  240 (294)
T ss_pred             CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999964321


Q ss_pred             cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                         .+|++|||||+++.++++++|||||||||||++|||+|++++++++.
T Consensus       241 ---~~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  287 (294)
T PRK14187        241 ---VKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQK  287 (294)
T ss_pred             ---ccceeCCccHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHHhh
Confidence               01699999999999999999999999999999999999999998754

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=9.3e-95  Score=671.74  Aligned_cols=283  Identities=52%  Similarity=0.826  Sum_probs=275.1

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      ||+.+|+||++|+++++++++++++|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         1 ~~~~il~Gk~vA~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~   79 (284)
T PRK14190          1 MMAVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELL   79 (284)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            57789999999999999999999999877 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++
T Consensus        80 ~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~  157 (284)
T PRK14190         80 ALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDIS  157 (284)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999988  578999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      ||+|+|||||++||+|+++||+++|||||+||++|+++.+++++|||||+|+|+|++|+++|+|||++|||+|+|+.+++
T Consensus       158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDvGi~~~~~g  237 (284)
T PRK14190        158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLENG  237 (284)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997542


Q ss_pred             ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                            |++|||||+++.+++++||||||||||||++|||+|+++++++|.+
T Consensus       238 ------kl~GDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~  283 (284)
T PRK14190        238 ------KLCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAGG  283 (284)
T ss_pred             ------CeeccCcHHHHhhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence                  7999999999999999999999999999999999999999998864

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.2e-94  Score=669.45  Aligned_cols=280  Identities=53%  Similarity=0.837  Sum_probs=271.3

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++||||++|++++++++++++.|+++ |++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus         2 ~ildGk~iA~~i~~~ik~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I   80 (282)
T PRK14182          2 NLIDGKQIAAKVKGEVATEVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALI   80 (282)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999999999877 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCc-cccCCHHHHHHHHHhhCCCcCCc
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPL-FLPCTPKGCLELLKRSGVTIKGK  168 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~-~~PcT~~av~~ll~~~~~~l~gk  168 (299)
                      ++||+|++|||||||+|||+|+|+.+++++|+|+|||||+|+.|+|+|+.|  ..+ |+||||+||+++|++|+++++||
T Consensus        81 ~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~~PcTp~avi~ll~~~~i~l~Gk  158 (282)
T PRK14182         81 ARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSIG--IAGVPRPCTPAGVMRMLDEARVDPKGK  158 (282)
T ss_pred             HHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhCC--CCCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999999999999999999999999999999999988  345 89999999999999999999999


Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCcc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK  248 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~  248 (299)
                      +|+|||||++||+|+++||+++|||||+|||+|+++++++++|||||+|+|+|++++++|||+|++|||+|+|+..++  
T Consensus       159 ~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDvGin~~~~g--  236 (282)
T PRK14182        159 RALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG--  236 (282)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEeeceecCCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999996442  


Q ss_pred             CCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       249 ~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                          +++|||||+++.++++++|||||||||||++|||+|+++++++|.+
T Consensus       237 ----kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~~~  282 (282)
T PRK14182        237 ----KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKRTAR  282 (282)
T ss_pred             ----CeeCCCCHHHHHhhccEecCCCCCChHHHHHHHHHHHHHHHHHhcC
Confidence                7999999999999999999999999999999999999999998853

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.4e-94  Score=669.47  Aligned_cols=280  Identities=44%  Similarity=0.731  Sum_probs=272.0

Q ss_pred             ceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHH
Q 022295            9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISK   88 (299)
Q Consensus         9 ~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~   88 (299)
                      +.+||||++|++++++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.
T Consensus         1 ~~il~Gk~va~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~   79 (282)
T PRK14169          1 ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAK   79 (282)
T ss_pred             CeeeehHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            468999999999999999999999877 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCc
Q 022295           89 VHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGK  168 (299)
Q Consensus        89 i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk  168 (299)
                      |++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.+  .++|+||||+||+++|++|+++++||
T Consensus        80 I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk  157 (282)
T PRK14169         80 VAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGK  157 (282)
T ss_pred             HHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999987  57899999999999999999999999


Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCcc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK  248 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~  248 (299)
                      +|+|||||++||+|+++||+++|||||+|||+|+|+++++++|||||+|+|+|+||+++|+|+|++|||+|+|+..++  
T Consensus       158 ~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDvGin~~~~g--  235 (282)
T PRK14169        158 RVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGADG--  235 (282)
T ss_pred             EEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCcEEEEeeccccCCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999996442  


Q ss_pred             CCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       249 ~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                          +++|||||+++.+++++||||||||||||++|||+|++++++++.
T Consensus       236 ----kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  280 (282)
T PRK14169        236 ----KLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKRRA  280 (282)
T ss_pred             ----CeeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence                799999999999999999999999999999999999999998754

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.1e-94  Score=669.01  Aligned_cols=278  Identities=41%  Similarity=0.700  Sum_probs=268.7

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      |+++||||++|+++++++++++++|+++...+|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         1 ~~~ildGk~iA~~i~~~lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~   80 (278)
T PRK14172          1 MGQIINGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLIN   80 (278)
T ss_pred             CCeEEeHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            57899999999999999999999998773256999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|.|+++.|  .++|+||||+||+++|++|+++++|
T Consensus        81 ~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~av~~lL~~~~i~l~G  158 (278)
T PRK14172         81 EIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEG  158 (278)
T ss_pred             HHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999988  5789999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      |+|+|||||.+||+|+++||+++|||||+|||+|+++.+++++|||||+|+|+|++++++|+|||++|||+|+|+.++  
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~g--  236 (278)
T PRK14172        159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG--  236 (278)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEeeccccCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999632  


Q ss_pred             cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHH
Q 022295          248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK  294 (299)
Q Consensus       248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~  294 (299)
                           +++|||||+++.+++++||||||||||||++|||+|++++++
T Consensus       237 -----kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~  278 (278)
T PRK14172        237 -----KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEALK  278 (278)
T ss_pred             -----ceeeeccHHHHHhhccEecCCCCCccHHHHHHHHHHHHHhcC
Confidence                 799999999999999999999999999999999999999864

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.7e-94  Score=673.18  Aligned_cols=287  Identities=49%  Similarity=0.807  Sum_probs=274.5

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      |+++||||++|+++++++++++++|+++ |++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         1 ~~~il~Gk~vA~~i~~~l~~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   79 (297)
T PRK14167          1 MTEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYD   79 (297)
T ss_pred             CCeEEeHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            6789999999999999999999999876 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|.|+|+.|  .++|+||||+||+++|++|+++++|
T Consensus        80 ~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~G  157 (297)
T PRK14167         80 TIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAG--DARFKPCTPHGIQKLLAAAGVDTEG  157 (297)
T ss_pred             HHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999988  5789999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhC----CCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA----DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~----gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~  243 (299)
                      |+|+|||||++||||+++||+++    +||||+|||+|+++++++++|||||+|+|+|++|+++|||||++|||+|+|+.
T Consensus       158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVIDvGin~~  237 (297)
T PRK14167        158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRV  237 (297)
T ss_pred             CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEcccccc
Confidence            99999999999999999999998    89999999999999999999999999999999999999999999999999996


Q ss_pred             CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      ++. ..+|++++|||||+++.+++++||||||||||||++|||+|++++++++.+
T Consensus       238 ~~~-~~~g~kl~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~  291 (297)
T PRK14167        238 DAD-TEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEG  291 (297)
T ss_pred             Ccc-cccCCceeecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence            431 112347999999999999999999999999999999999999999987654

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.1e-94  Score=668.36  Aligned_cols=280  Identities=47%  Similarity=0.784  Sum_probs=270.8

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++||||++|++|++++++++++|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus         2 ~il~Gk~~a~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I   80 (282)
T PRK14166          2 TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALI   80 (282)
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999999999877 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|. .++|+||||+||+++|++|+++++||+
T Consensus        81 ~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~avi~lL~~y~i~l~Gk~  159 (282)
T PRK14166         81 NTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGL-ESGFLPCTPLGVMKLLKAYEIDLEGKD  159 (282)
T ss_pred             HHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCE
Confidence            9999999999999999999999999999999999999999999999999873 468999999999999999999999999


Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK  249 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~  249 (299)
                      |+|||||.+||+|+++||+++|||||+|||+|+|+++++++|||||+|+|+|+||+++|||||++|||+|+|+..++   
T Consensus       160 vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDvGin~~~~g---  236 (282)
T PRK14166        160 AVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG---  236 (282)
T ss_pred             EEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEecccccCCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999996432   


Q ss_pred             CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                         |++|||||+++.+++++||||||||||||++|||+|+++++++..
T Consensus       237 ---kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~  281 (282)
T PRK14166        237 ---KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRL  281 (282)
T ss_pred             ---CeeCCCCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence               799999999999999999999999999999999999999998654

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=5e-94  Score=666.95  Aligned_cols=281  Identities=50%  Similarity=0.808  Sum_probs=273.4

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++||||++|++|+++++++++.|+++++++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus         2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I   81 (286)
T PRK14184          2 LLLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLI   81 (286)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999999887789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|  .++|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~  159 (286)
T PRK14184         82 AELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKK  159 (286)
T ss_pred             HHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999987  578999999999999999999999999


Q ss_pred             EEEEcCCccchHHHHHHHhh----CCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~----~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~  245 (299)
                      |+|||||.+||+|+++||++    +|||||+||++|+++.+++++|||||+|+|+|++|+++|+|+|++|||+|+++.++
T Consensus       160 vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavVIDVGi~~~~~  239 (286)
T PRK14184        160 AVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDD  239 (286)
T ss_pred             EEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeeeccCC
Confidence            99999999999999999999    89999999999999999999999999999999999999999999999999999743


Q ss_pred             CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhcC
Q 022295          246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL  299 (299)
Q Consensus       246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~~  299 (299)
                             +++|||||+++.+++++||||||||||||++|||+|+++++++..||
T Consensus       240 -------~l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~~~~~~  286 (286)
T PRK14184        240 -------GLVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWKERVGL  286 (286)
T ss_pred             -------CccCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhCC
Confidence                   59999999999999999999999999999999999999999988775

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=8.4e-94  Score=668.54  Aligned_cols=286  Identities=50%  Similarity=0.763  Sum_probs=274.6

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      |+.+||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++
T Consensus         1 ~~~ildGk~iA~~i~~~lk~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~   80 (297)
T PRK14186          1 MALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEA   80 (297)
T ss_pred             CCEEeehHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            67899999999999999999999998877899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|  ...|.||||+||+++|++|+++++|
T Consensus        81 ~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~G  158 (297)
T PRK14186         81 LIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKG--EPGLRSCTPAGVMRLLRSQQIDIAG  158 (297)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999987  4679999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      |+|+|||||++||+|+++||+++|||||+|||+|+++++++++|||||+|+|+|++++++|||+|++|||+|+|+.+++ 
T Consensus       159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~~~-  237 (297)
T PRK14186        159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPSS-  237 (297)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999996432 


Q ss_pred             cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      ..+| |++|||||+++.+++++||||||||||||++|||+|++++++++.
T Consensus       238 ~~~g-kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~  286 (297)
T PRK14186        238 DGKT-RLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRH  286 (297)
T ss_pred             ccCC-ceeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence            1124 899999999999999999999999999999999999999998754

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=7.9e-94  Score=664.51  Aligned_cols=278  Identities=46%  Similarity=0.749  Sum_probs=270.5

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      -+.+||||++|++|++++++++++|+++.+.+|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         2 ~~~ildGk~ia~~i~~~lk~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~   81 (284)
T PRK14177          2 SPILLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLG   81 (284)
T ss_pred             CCeEeEhHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            37899999999999999999999998886788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++|
T Consensus        82 ~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~ll~~y~i~l~G  159 (284)
T PRK14177         82 VIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMG--VETYLPCTPYGMVLLLKEYGIDVTG  159 (284)
T ss_pred             HHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcC--CCCCCCCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999988  5789999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      |+|+|||||++||+|++++|+++|||||+|||+|+|+++++++|||||+|+|+|+|+++||||||++|||+|+|+     
T Consensus       160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDvGin~-----  234 (284)
T PRK14177        160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNP-----  234 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEecCcc-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987     


Q ss_pred             cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                           +++|||||+++.+++++||||||||||||++|||+|+++++++.+
T Consensus       235 -----~~~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  279 (284)
T PRK14177        235 -----GNVGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFKEHF  279 (284)
T ss_pred             -----cccCCcCHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHhcc
Confidence                 489999999999999999999999999999999999999997654

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.1e-93  Score=663.57  Aligned_cols=280  Identities=47%  Similarity=0.754  Sum_probs=271.4

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      .+||||++|++|++++++++++|+++.|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus         2 ~ildGk~va~~i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I   81 (282)
T PRK14180          2 ILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELI   81 (282)
T ss_pred             ceeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999999999877689999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|+ ..+|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~aii~lL~~y~i~l~Gk~  160 (282)
T PRK14180         82 DQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAY  160 (282)
T ss_pred             HHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCC-CCCcCCCCHHHHHHHHHHhCCCCCCCE
Confidence            9999999999999999999999999999999999999999999999999873 368999999999999999999999999


Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK  249 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~  249 (299)
                      |+|||||.+||+|+++||.++|||||+|||+|+|+.+++++|||||+|+|+|+|++++|||||++|||+|+|+.++    
T Consensus       161 vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~g----  236 (282)
T PRK14180        161 AVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG----  236 (282)
T ss_pred             EEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEecccccCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998632    


Q ss_pred             CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                         +++|||||+++.++++++|||||||||||++|||+|++++++++.
T Consensus       237 ---kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~  281 (282)
T PRK14180        237 ---KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN  281 (282)
T ss_pred             ---ceeCCcCHHHHHhhccEeccCCCChhHHHHHHHHHHHHHHHHHhc
Confidence               799999999999999999999999999999999999999998765

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.6e-93  Score=663.29  Aligned_cols=282  Identities=44%  Similarity=0.764  Sum_probs=268.7

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++||||++|++++++++++++.|    +++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus         1 ~ildGk~iA~~i~~~~k~~v~~l----~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I   76 (287)
T PRK14181          1 MLLKGAPAAEHILATIKENISAS----STAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLI   76 (287)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            37999999999999999999987    68999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+ .++|+||||+||+++|++|+++++||+
T Consensus        77 ~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~-~~~~~PcTp~avi~lL~~~~i~l~Gk~  155 (287)
T PRK14181         77 HRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGE-TDGFIPCTPAGIIELLKYYEIPLHGRH  155 (287)
T ss_pred             HHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence            9999999999999999999999999999999999999999999999999884 467999999999999999999999999


Q ss_pred             EEEEcCCccchHHHHHHHhhC----CCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKA----DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~----gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~  245 (299)
                      |+|||||.+||||+++||+++    |||||+|||+|+++++++++|||||+|+|+|++|+++|||||++|||+|+|+..+
T Consensus       156 vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~~~~  235 (287)
T PRK14181        156 VAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVPA  235 (287)
T ss_pred             EEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEeccccccc
Confidence            999999999999999999999    8999999999999999999999999999999999999999999999999999643


Q ss_pred             CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      .+ .+|++++|||||+++.++++|+|||||||||||++|||+|++++++++.
T Consensus       236 ~~-~~g~kl~GDVd~e~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  286 (287)
T PRK14181        236 AN-PKGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLRHS  286 (287)
T ss_pred             cc-CCCCeeEeccchHHHHhhcccccCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence            11 1234799999999999999999999999999999999999999998753

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.4e-93  Score=661.85  Aligned_cols=281  Identities=48%  Similarity=0.807  Sum_probs=271.2

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      ||+.+|+||++|++++++++++++.|+++ |++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         1 ~~~~il~Gk~va~~i~~~l~~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~   79 (284)
T PRK14193          1 MTAIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELN   79 (284)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            45779999999999999999999999877 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|  ..+|+||||+||+++|++|+++++
T Consensus        80 ~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~  157 (284)
T PRK14193         80 AVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLN--EPAPLPCTPRGIVHLLRRYDVELA  157 (284)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999987  567999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhh--CCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLK--ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD  244 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~--~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~  244 (299)
                      ||+|+|||||++||+|+++||++  +|||||+|||+|+++.+++++|||||+|+|+|+|++++|+|||++|||+|+|+..
T Consensus       158 Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~GavVIDvGin~~~  237 (284)
T PRK14193        158 GAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAG  237 (284)
T ss_pred             CCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcCccCHHHcCCCCEEEEccccccC
Confidence            99999999999999999999998  7999999999999999999999999999999999999999999999999999954


Q ss_pred             CCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          245 DSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       245 ~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      ++      +++|||| +++.+++++||||||||||||++|||+|+++++++..
T Consensus       238 ~g------kl~GDvd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  283 (284)
T PRK14193        238 DG------KLVGDVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAERRA  283 (284)
T ss_pred             CC------cEEeecC-HhHHhhCCEEeCCCCChhHHHHHHHHHHHHHHHHHhh
Confidence            32      7999999 8999999999999999999999999999999998754

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.4e-93  Score=660.42  Aligned_cols=279  Identities=49%  Similarity=0.807  Sum_probs=270.3

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus         2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I   81 (281)
T PRK14183          2 QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETI   81 (281)
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999999873489999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+++.|  .++|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~  159 (281)
T PRK14183         82 AMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRLVTG--LDGFVPCTPLGVMELLEEYEIDVKGKD  159 (281)
T ss_pred             HHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999988  578999999999999999999999999


Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK  249 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~  249 (299)
                      |+|||||.+||+|+|++|+++|||||+|||+|+|+.+++++|||||+|+|+|++++++|||||++|||+|+|+..++   
T Consensus       160 vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDvGin~~~~g---  236 (281)
T PRK14183        160 VCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG---  236 (281)
T ss_pred             EEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEEEeeccccCCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999996442   


Q ss_pred             CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 022295          250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV  296 (299)
Q Consensus       250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~  296 (299)
                         |+||||||+++.+++++||||||||||||++|||+|+++++++.
T Consensus       237 ---kl~GDVd~~~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~  280 (281)
T PRK14183        237 ---RLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAKNR  280 (281)
T ss_pred             ---CeECCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHhc
Confidence               79999999999999999999999999999999999999999753

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4e-93  Score=661.12  Aligned_cols=283  Identities=51%  Similarity=0.848  Sum_probs=273.9

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      ||+++||||++|++|+++++++++.|+++ |++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++|+|++
T Consensus         1 M~~~ildGk~va~~i~~~lk~~i~~l~~~-g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~   79 (285)
T PRK14189          1 MTAQLIDGNALSKQLRAEAAQRAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELL   79 (285)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            45779999999999999999999999876 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|++||||+||+|||+|+|+++++++|+|+|||||||+.|+|+++.|  .++|+||||+||+++|++|+++++
T Consensus        80 ~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~  157 (285)
T PRK14189         80 ARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMTG--QPLFRPCTPYGVMKMLESIGIPLR  157 (285)
T ss_pred             HHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhCC--CCCCcCCCHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999987  578999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      ||+|+|||||++||+|++++|.++|||||+||++|+++.+++++|||||+|+|+|++++++|+|||++|||+|+|+..++
T Consensus       158 Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDVGin~~~~g  237 (285)
T PRK14189        158 GAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDAG  237 (285)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999986442


Q ss_pred             ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                            |++|||||+++.+++++||||||||||||++|||+|++++++++..
T Consensus       238 ------kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~~  283 (285)
T PRK14189        238 ------KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA  283 (285)
T ss_pred             ------CeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence                  7999999999999999999999999999999999999999998763

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=5.8e-93  Score=659.59  Aligned_cols=280  Identities=44%  Similarity=0.769  Sum_probs=271.6

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      |+++||||++|++|+++++++++.|+++.|++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         7 ~~~ildGk~iA~~i~~~l~~~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   86 (287)
T PRK14176          7 ESRIIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLE   86 (287)
T ss_pred             ceEEEEhHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            48999999999999999999999998876899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|++||+|++||||+||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|  .++|+||||+||+++|++|+++++|
T Consensus        87 ~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g--~~~~~PcTp~av~~ll~~~~i~l~G  164 (287)
T PRK14176         87 LIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIG--DEGLVPCTPHGVIRALEEYGVDIEG  164 (287)
T ss_pred             HHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999988  5689999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      |+|+|||||++||+|++++|+++|||||+||++|+|+++++++|||||+|+|+|++|+++|+++|++|||+|+|+.+   
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvGin~~~---  241 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKEE---  241 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEecccccC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999752   


Q ss_pred             cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 022295          248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV  296 (299)
Q Consensus       248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~  296 (299)
                         | |++|||||+.+.++++++|||||||||||++|||+|+++++++.
T Consensus       242 ---g-kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~  286 (287)
T PRK14176        242 ---D-KVYGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEKS  286 (287)
T ss_pred             ---C-CccCCcCHHHHHhhceEcCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence               2 79999999999999999999999999999999999999998753

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=8e-93  Score=658.61  Aligned_cols=284  Identities=54%  Similarity=0.852  Sum_probs=274.8

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      ||+++||||++|+++++++++++++|+++.+++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         1 M~~~ildGk~va~~i~~~lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~   80 (285)
T PRK10792          1 MTAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELL   80 (285)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            45789999999999999999999999887678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++
T Consensus        81 ~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~  158 (285)
T PRK10792         81 ALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQR--IPLLRPCTPRGIMTLLERYGIDTY  158 (285)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHhCC--CCCCCCCCHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999987  578999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      ||+|+|||||.+||+|++++|+++|||||+|||+|+++++++++|||||+|+|+|++|+++|+++|++|||+|+|+.+++
T Consensus       159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvGin~~~~g  238 (285)
T PRK10792        159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDG  238 (285)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEcccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997542


Q ss_pred             ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                            +++|||||+.+.++++++|||||||||||++|||+|+++++++|..
T Consensus       239 ------k~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~~~  284 (285)
T PRK10792        239 ------KLVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQACEEYHD  284 (285)
T ss_pred             ------CcCCCcCHHHHHhhccCcCCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence                  7999999999999999999999999999999999999999998863

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.6e-92  Score=655.17  Aligned_cols=280  Identities=48%  Similarity=0.768  Sum_probs=272.0

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus         2 ~il~Gk~~A~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I   81 (285)
T PRK14191          2 VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLI   81 (285)
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999999877789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~  159 (285)
T PRK14191         82 KDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQ--LDGFVPATPMGVMRLLKHYHIEIKGKD  159 (285)
T ss_pred             HHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999988  578999999999999999999999999


Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK  249 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~  249 (299)
                      |+|||||++||+|+|++|+++|||||+||++|+++.+++++|||||+|+|+|++++++|+|||++|||+|+|+.+++   
T Consensus       160 vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvGi~~~~~g---  236 (285)
T PRK14191        160 VVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG---  236 (285)
T ss_pred             EEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEeecccccCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999996442   


Q ss_pred             CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                         |+||||||+++.+++++||||||||||||++|||+|++++++++.
T Consensus       237 ---klvGDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~  281 (285)
T PRK14191        237 ---RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAEKRQ  281 (285)
T ss_pred             ---ceeccccHHHHhhhccEEecCCCCChHHHHHHHHHHHHHHHHHHH
Confidence               799999999999999999999999999999999999999998754

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.5e-92  Score=654.51  Aligned_cols=282  Identities=49%  Similarity=0.821  Sum_probs=274.5

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      |+++||||++|++++++++++++.|++++|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         1 ~~~ildGk~ia~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~   80 (284)
T PRK14179          1 MTEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLD   80 (284)
T ss_pred             CCeEEEhHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            57899999999999999999999998877899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++|
T Consensus        81 ~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~G  158 (284)
T PRK14179         81 LIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSG--RPVMIPCTPAGIMEMFREYNVELEG  158 (284)
T ss_pred             HHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999987  5789999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      |+|+|||+|++||+|+|++|+++|||||+||++|+++++++++|||||+|+|+|++++++|++||++|||+|+|+..++ 
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDvgin~~~~g-  237 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDENG-  237 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHHccCCcEEEEecceecCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999996442 


Q ss_pred             cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                           |+||||||+++.+++++||||||||||||++|||+|+++++++|.
T Consensus       238 -----kl~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  282 (284)
T PRK14179        238 -----KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRSL  282 (284)
T ss_pred             -----CeecCccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence                 799999999999999999999999999999999999999999986

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=5.3e-92  Score=653.68  Aligned_cols=280  Identities=48%  Similarity=0.751  Sum_probs=267.7

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      |++.+|+||++|++|+++++++++.|    +++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         1 m~~~il~Gk~vA~~i~~~l~~~v~~l----~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   76 (287)
T PRK14173          1 MAARELSGPPAAEAVYAELRARLAKL----PFVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELL   76 (287)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            45679999999999999999999987    47899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|  .+.|+||||+||+++|++|+++++
T Consensus        77 ~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~  154 (287)
T PRK14173         77 ELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMG--GEALEPCTPAGVVRLLKHYGIPLA  154 (287)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999988  467999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      ||+|+|||||++||+|+++||+++|||||+|||+|+|+++++++|||||+|+|+|+|++++|||+|++|||+|+|+..++
T Consensus       155 Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDVGin~~~~~  234 (287)
T PRK14173        155 GKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGGN  234 (287)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999996321


Q ss_pred             ccCCCce--eeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          247 TKKSGYR--LVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       247 ~~~~g~k--l~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                         +| +  ++|||| +++.+++++||||||||||||++|||+|++++++++.
T Consensus       235 ---~g-k~~l~GDVd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  282 (287)
T PRK14173        235 ---GG-RDILTGDVH-PEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALRRR  282 (287)
T ss_pred             ---CC-ceeeecccc-HhHHhhCcEEecCCCChhHHHHHHHHHHHHHHHHHHc
Confidence               12 5  999999 6899999999999999999999999999999998754

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.5e-91  Score=653.81  Aligned_cols=290  Identities=54%  Similarity=0.839  Sum_probs=275.3

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      .+||||++|++++++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus         2 ~il~Gk~iA~~i~~~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I   81 (295)
T PRK14174          2 LIIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKI   81 (295)
T ss_pred             EEEeHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999999999887789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++||||+||+|||+|+|+.+++++|+|+|||||+|+.|+|+|+.|+..++|+||||+||+++|++|+++++||+
T Consensus        82 ~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l~Gk~  161 (295)
T PRK14174         82 EDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKH  161 (295)
T ss_pred             HHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCCCCCE
Confidence            99999999999999999999999999999999999999999999999998853478999999999999999999999999


Q ss_pred             EEEEcCCccchHHHHHHHhh----CCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~----~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~  245 (299)
                      |+|||||++||+|+++||++    +|+|||+||++|.++.+++++|||||+|+|+|++|+++|+|+|++|||+|+++.++
T Consensus       162 vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~~li~~~~vk~GavVIDVgi~~~~~  241 (295)
T PRK14174        162 CVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIED  241 (295)
T ss_pred             EEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEecCccCccCHHHcCCCCEEEEeecccccc
Confidence            99999999999999999998    78999999999999999999999999999999999999999999999999999644


Q ss_pred             CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhcC
Q 022295          246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL  299 (299)
Q Consensus       246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~~  299 (299)
                      +..++|+|++|||||+++.+++++||||||||||||++|||+|+++++++...|
T Consensus       242 ~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~~~  295 (295)
T PRK14174        242 PSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVNNL  295 (295)
T ss_pred             ccccCCCceECCcCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhcC
Confidence            222334489999999999999999999999999999999999999999876543

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.5e-91  Score=651.23  Aligned_cols=283  Identities=46%  Similarity=0.786  Sum_probs=273.5

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      ||+++||||++|++++++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         1 m~~~il~Gk~ia~~i~~~~~~~v~~l~~~-g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~   79 (286)
T PRK14175          1 MVAKILDGKQIAKDYRQGLQDQVEALKEK-GFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVL   79 (286)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            56789999999999999999999999876 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|  .++|+||||+||+++|++|+++++
T Consensus        80 ~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~l~  157 (286)
T PRK14175         80 NELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYID--EQTFVPCTPLGIMEILKHADIDLE  157 (286)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcC--CCCCCCCcHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999987  578999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      ||+|+|||||++||+|+|++|.++|||||+|||+|.++.+++++|||||+|+|+|++|+++|+++|++|||+|+++..+ 
T Consensus       158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvGi~~~~~-  236 (286)
T PRK14175        158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDEN-  236 (286)
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcCCCcCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998533 


Q ss_pred             ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                          | |++|||||+++.++++++|||||||||||++|||+|++++++++.+
T Consensus       237 ----g-kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~~~  283 (286)
T PRK14175        237 ----G-KLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRG  283 (286)
T ss_pred             ----C-CeecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence                2 7999999999999999999999999999999999999999987654

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.3e-90  Score=645.38  Aligned_cols=285  Identities=50%  Similarity=0.823  Sum_probs=274.1

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      ||+++||||++|++|+++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         2 m~~~il~Gk~iA~~i~~~lk~~i~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~   80 (301)
T PRK14194          2 MSAKLIDGKAAAARVLAQVREDVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLL   80 (301)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            56789999999999999999999999877 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|  .++|+||||+||+++|++|+++++
T Consensus        81 ~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~  158 (301)
T PRK14194         81 ALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQG--RDVLTPCTPSGCLRLLEDTCGDLT  158 (301)
T ss_pred             HHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999988  578999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      ||+|+|||+|++||+|+|++|+++|++||+|||+|+++++++++|||||+++|.|++++++|++||++|||+|+|+.++.
T Consensus       159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDvgin~~~~~  238 (301)
T PRK14194        159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDD  238 (301)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhhccCCcEEEEecccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999996431


Q ss_pred             ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      .   .+|++|||||+++.+++++||||||||||||++|||+|+++++++|.
T Consensus       239 g---~~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~  286 (301)
T PRK14194        239 G---RSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQA  286 (301)
T ss_pred             C---CcceecccchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            0   12799999999999999999999999999999999999999999886

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=7.2e-90  Score=637.16  Aligned_cols=274  Identities=52%  Similarity=0.827  Sum_probs=266.1

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++||||++|++|++++++++++|    +++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus         1 ~il~Gk~~a~~i~~~~~~~v~~l----g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I   76 (279)
T PRK14178          1 MILDGKAVSEKRLELLKEEIIES----GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERI   76 (279)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHh----CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            38999999999999999999887    78999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|  .++|+||||+|++++|++|+++++||+
T Consensus        77 ~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~  154 (279)
T PRK14178         77 RRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRLVSG--LPGFAPCTPNGIMTLLHEYKISIAGKR  154 (279)
T ss_pred             HHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCE
Confidence            999999999999999999999999999999999999999999999999987  578999999999999999999999999


Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK  249 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~  249 (299)
                      |+|+|||..||+|+|++|.++|||||+|||+|+++.+++++|||||+|+|+|++++++|+|||++|||+|+++.++    
T Consensus       155 V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDVgi~~~~g----  230 (279)
T PRK14178        155 AVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVNG----  230 (279)
T ss_pred             EEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEeeccccCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998632    


Q ss_pred             CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 022295          250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV  296 (299)
Q Consensus       250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~  296 (299)
                         |++|||||+++.++++++|||||||||||++|||+|++++++++
T Consensus       231 ---kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  274 (279)
T PRK14178        231 ---KLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAKMR  274 (279)
T ss_pred             ---CCcCCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence               79999999999999999999999999999999999999998753

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.7e-88  Score=634.31  Aligned_cols=288  Identities=54%  Similarity=0.852  Sum_probs=273.9

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      |+++||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         1 ~~~il~Gk~~a~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~   80 (296)
T PRK14188          1 MATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLA   80 (296)
T ss_pred             CCEEEEHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            57899999999999999999999998776899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|  .++|+||||+||+++|++|+++++|
T Consensus        81 ~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~~~G  158 (296)
T PRK14188         81 LIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATG--ETALVPCTPLGCMMLLRRVHGDLSG  158 (296)
T ss_pred             HHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999988  5789999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      |+|+|||||+.+|+|+|++|+++|++|++||++|+++++++++|||||+++|.|++++++|++||++|||+|+|+.++.+
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~~~~~~  238 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPE  238 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999864211


Q ss_pred             cCCCc-eeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          248 KKSGY-RLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       248 ~~~g~-kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      .++|+ +++|||||+++.+++++||||||||||||++|||+|+++++++..
T Consensus       239 ~~~g~~~l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  289 (296)
T PRK14188        239 KGEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRAA  289 (296)
T ss_pred             ccCCCceeeCCCCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            11232 699999999999999999999999999999999999999998753

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=100.00  E-value=1e-88  Score=662.75  Aligned_cols=291  Identities=55%  Similarity=0.884  Sum_probs=285.8

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL   85 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~-~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el   85 (299)
                      |++.||+|+.+|+++|++++++++.+++++ +++|.|+|||||++++|+.|+|||.|+++++||++.++.||++++|-||
T Consensus         1 ~~a~IL~Gk~la~kvr~~v~~eI~~ik~~~PnF~p~LaIiQVGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~el   80 (935)
T KOG4230|consen    1 MVAEILSGKELARKVREDVAEEIQSIKEHHPNFKPVLAIIQVGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGEL   80 (935)
T ss_pred             CcchhhccHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHH
Confidence            568999999999999999999999999988 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCc
Q 022295           86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTI  165 (299)
Q Consensus        86 ~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l  165 (299)
                      +..|.+||+|+.||||+||+|||.|+|++.+.++|+|+||||||+.+|.|+|..++.++.|+||||.|||++|+++++.+
T Consensus        81 l~~I~~lNeD~tvHGiiVQLPLp~hide~~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a~v~v  160 (935)
T KOG4230|consen   81 LREIKALNEDPTVHGIIVQLPLPAHIDEDTVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEAGVFV  160 (935)
T ss_pred             HHHHHhccCCCccceEEEeccCccccchhhHhhccCcccccccccccchhhhhccCCCceeeccChHHHHHHHHHcCCcc
Confidence            99999999999999999999999999999999999999999999999999999887789999999999999999999999


Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~  245 (299)
                      .||++||+|||.+||.|++.+|.+.++|||+|||+|+++.+++.+|||||.|+|.|+|++.||+|||++|||+|+|++.|
T Consensus       161 ~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT~~lae~v~~ADIvIvAiG~PefVKgdWiKpGavVIDvGINyvpD  240 (935)
T KOG4230|consen  161 AGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINYVPD  240 (935)
T ss_pred             ccceeEEEecccccCChHHHHHHhcCceEEEecCCCccHHHHhccCCEEEEEcCCcceeecccccCCcEEEEccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      +++++|+|++|||||+++.+++++||||||||||||+||||+|++++++|+.
T Consensus       241 ~~Kksg~klvGDVdfe~Akevas~ITPVPGGVGPMTVAMLmqNtveaAKR~r  292 (935)
T KOG4230|consen  241 PSKKSGFKLVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNTVEAAKRQR  292 (935)
T ss_pred             CCCcccceEeeecchHhhhhhhhccccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            9888999999999999999999999999999999999999999999999875

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=6.9e-84  Score=601.55  Aligned_cols=283  Identities=43%  Similarity=0.760  Sum_probs=272.9

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      ||+++||||++|++++++++++++.|+++.|++|+|++|+||+||+|..|+++|+++|+++||+++++.||+++++++|.
T Consensus         1 ~~~~~l~gk~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~   80 (283)
T PRK14192          1 MMALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLL   80 (283)
T ss_pred             CCCeEeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            45679999999999999999999999887789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|+++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.|  .+.|.||||.|++++|++|+++++
T Consensus        81 ~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~l~~~--~~~~~p~T~~gii~~L~~~~i~l~  158 (283)
T PRK14192         81 AKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELA  158 (283)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCccccC--CCcccCCcHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999987  578999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      ||+|+|+|||++||+|++++|+++||+||+|||+++++.+.+++|||||+|||+|++++.+|+++|++|||+|+++.++ 
T Consensus       159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDvg~n~~~~-  237 (283)
T PRK14192        159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDG-  237 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEEEEeecCC-
Confidence            9999999999988999999999999999999999999999999999999999999999999999999999999998643 


Q ss_pred             ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                            ++||||||+++.++++++|||||||||||++|||+|++++++++++
T Consensus       238 ------~~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~n~~~~~~~~~~  283 (283)
T PRK14192        238 ------GGVGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEKALG  283 (283)
T ss_pred             ------CCcccccHHHhhccceEeCCCCCcChHHHHHHHHHHHHHHHHHhcC
Confidence                  5899999999999999999999999999999999999999987653

>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]

Probab=100.00  E-value=1.2e-81  Score=569.35  Aligned_cols=290  Identities=60%  Similarity=0.926  Sum_probs=279.3

Q ss_pred             cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      ++.+++||.+|+.+++++..+++.+++.+|..|+|+.++||+||+|..|+.+|+|+|+++||.+..+.||++.+++++++
T Consensus         7 ~~~viagk~~a~~i~~~i~~e~~~~~~~~g~~P~L~~~lvg~~pas~~Ya~~k~kac~~vGi~s~~~~l~~~~~~~~l~~   86 (309)
T KOG0089|consen    7 TAVVIAGKVAATFIRQEIANEVEGMKESNGKVPGLVGFLVGEDPASQMYATNKTKACEEVGIKSFQYELPESESEDELES   86 (309)
T ss_pred             ceEEEehhHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEeCCCcchHHHHHHHHHHHHHhhhcccccccccccCHHHHHH
Confidence            57899999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG  167 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g  167 (299)
                      .|.++|+||+||||+||+|+|.|++++.|++.++|+|||||||+.|.|+|...+..+.|+||||.||+++|+++++.+.|
T Consensus        87 ~i~~~N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~gI~~~G  166 (309)
T KOG0089|consen   87 AIAEANNDPSVHGILVQLPVPQHIQEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERTGIETYG  166 (309)
T ss_pred             HHHHhcCCCceeeEEEEeeccccccHHHHHhhcCcccccccccccchhhhccccccccccCCchHHHHHHHHHhCCeecC
Confidence            99999999999999999999999999999999999999999999999999987667789999999999999999999999


Q ss_pred             cEEEEEcCCccchHHHHHHHhhC--------CCeEEEEcCCCCC--hhhhccCCcEEEEecCCCCcCCCCccCCCeEEEE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA--------DATVTIVHSHTTD--PESIVREADIVIAAAGQAMMIKGSWIKPGAAVID  237 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~--------gatVtv~~~~t~~--l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVID  237 (299)
                      |+++|+|||++||+|+|++|++.        .||||++||.|++  ++.++++|||+|+|+|.|++|+.||+|||+.|+|
T Consensus       167 Kn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g~p~li~~d~Ik~Ga~vid  246 (309)
T KOG0089|consen  167 KNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGAAVID  246 (309)
T ss_pred             ceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcCCCcccccceeecCceeEe
Confidence            99999999999999999999998        6899999999976  4889999999999999999999999999999999


Q ss_pred             eeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          238 VGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       238 vg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      +|+|+..++....+.+|+|||||+++..++++||||||||||||+||||+|+++++++.+
T Consensus       247 vgin~v~dp~~a~~~klvgdvdFe~~~~kag~itpVPggvGpmTiAMLl~Ntl~~ak~v~  306 (309)
T KOG0089|consen  247 VGINRVHDPSTAVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKRVF  306 (309)
T ss_pred             cCCCcccccccceeeEEeeeccHHHhhhhcCccccCCCCCCchhHHHHHHHHHHHHHHHh
Confidence            999999998766577999999999999999999999999999999999999999999765

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=100.00  E-value=2.1e-55  Score=378.39  Aligned_cols=160  Identities=56%  Similarity=0.926  Sum_probs=138.8

Q ss_pred             CcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhcc
Q 022295          130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVR  209 (299)
Q Consensus       130 ~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~  209 (299)
                      ||+|+|+|+.|  +++|+||||+|++++|++|+++++||+|+|||||++||+|++++|.++|||||+||++|++++++++
T Consensus         1 hp~N~g~l~~~--~~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~   78 (160)
T PF02882_consen    1 HPLNLGRLVSG--QPGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR   78 (160)
T ss_dssp             SHHHHHHHHTT--TTSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT
T ss_pred             CcHhHHHHhCC--CCCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee
Confidence            79999999988  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHH
Q 022295          210 EADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNT  289 (299)
Q Consensus       210 ~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~  289 (299)
                      +|||||+|+|+|++|+++|+|||++|||+|+++...     +++++|||||++++++++++|||||||||+|++|||+|+
T Consensus        79 ~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~~~-----~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~~N~  153 (160)
T PF02882_consen   79 RADIVVSAVGKPNLIKADWIKPGAVVIDVGINYVPG-----DGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLMKNL  153 (160)
T ss_dssp             TSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEEETT-----TTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHHHHH
T ss_pred             eccEEeeeeccccccccccccCCcEEEecCCccccc-----cceeeecccHHHhhccceEEeeCCCCccHHHHHHHHHHH
Confidence            999999999999999999999999999999999722     138999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 022295          290 LDGAKRV  296 (299)
Q Consensus       290 v~a~~~~  296 (299)
                      +++++++
T Consensus       154 v~a~~~~  160 (160)
T PF02882_consen  154 VKAAKRQ  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9999874

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=100.00  E-value=1.3e-49  Score=350.14  Aligned_cols=157  Identities=30%  Similarity=0.443  Sum_probs=144.5

Q ss_pred             ccccCCCCCcccccccccCCC-------CCccccCCHHHHHHHHHhhCC---------CcCCcEEEEEcCCccchHHHHH
Q 022295          122 LEKDVDGFHPLNIGKLAMKGR-------DPLFLPCTPKGCLELLKRSGV---------TIKGKRAVVVGRSNIVGLPVSL  185 (299)
Q Consensus       122 p~KDVDg~~~~n~g~l~~g~~-------~~~~~PcT~~av~~ll~~~~~---------~l~gk~vvViG~s~~vG~pla~  185 (299)
                      |+|||||+|+.|+|+|+.|..       .++|+||||+||+++|++|++         +++||+|+|||||++||+|+|+
T Consensus         1 P~KDVDGl~~~n~g~l~~~~~~~~~~~~~~~~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~   80 (197)
T cd01079           1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAA   80 (197)
T ss_pred             CCCCcCCCCHHHHHHHhcCCccccccccCCCccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHH
Confidence            799999999999999997731       158999999999999999977         8999999999999999999999


Q ss_pred             HHhhCCCeEEEE---------------cCCC--CC----hhhhccCCcEEEEecCCCCc-CCCCccCCCeEEEEeeccCC
Q 022295          186 LLLKADATVTIV---------------HSHT--TD----PESIVREADIVIAAAGQAMM-IKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       186 lL~~~gatVtv~---------------~~~t--~~----l~~~~~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~~~  243 (299)
                      ||+++|||||+|               |++|  ++    +.+++++|||||+|+|+|+| |++||||||++|||+|+++ 
T Consensus        81 lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~~-  159 (197)
T cd01079          81 LLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIK-  159 (197)
T ss_pred             HHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCCc-
Confidence            999999999999               6776  46    78999999999999999999 9999999999999999874 


Q ss_pred             CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 022295          244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV  296 (299)
Q Consensus       244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~  296 (299)
                                   |+| +++.++++++|||   |||||++|||+|++++++++
T Consensus       160 -------------dvd-~~v~~~as~iTPv---VGpvTva~L~~Nlv~~~~~~  195 (197)
T cd01079         160 -------------NFE-PSVKEKASIYVPS---IGKVTIAMLLRNLLRLYHNQ  195 (197)
T ss_pred             -------------Ccc-HhHHhhcCEeCCC---cCHHHHHHHHHHHHHHHHHh
Confidence                         344 7899999999998   99999999999999999865

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=100.00  E-value=3.5e-43  Score=296.62  Aligned_cols=136  Identities=37%  Similarity=0.594  Sum_probs=130.1

Q ss_pred             CCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCC
Q 022295          143 DPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       143 ~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      ++.|+||||+|++++|++|+++++||+|+|+|||..+|+|++.+|.++|++|++||++|+++++++++|||||+|+|+|+
T Consensus         4 ~~~~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~   83 (140)
T cd05212           4 TPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPE   83 (140)
T ss_pred             CCcccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          223 MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       223 ~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      +|+++|+|||++|+|+|+++.               +|+++.++++++|||||||||||++|||+|+++++
T Consensus        84 ~i~~~~ikpGa~Vidvg~~~~---------------~~~~~~~~a~~~tPvpgGVGp~T~a~L~~n~~~~~  139 (140)
T cd05212          84 KVPTEWIKPGATVINCSPTKL---------------SGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSV  139 (140)
T ss_pred             ccCHHHcCCCCEEEEcCCCcc---------------cchhhHhhceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence            999999999999999999862               15788899999999999999999999999999875

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=100.00  E-value=7.2e-43  Score=303.19  Aligned_cols=168  Identities=60%  Similarity=0.981  Sum_probs=158.3

Q ss_pred             ccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          122 LEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       122 p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      |+|||||++..|.|+++.+  ...|+|||+.|++++++++..+++||+|+|||+|+++|++++.+|.++|++|++++|++
T Consensus         1 ~~kdvdg~~~~~~~~~~~~--~~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080           1 PEKDVDGLHPVNLGRLALG--RPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCccccCCCccchhhHhcC--CCCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            6899999999999999976  57899999999999999999999999999999999889999999999999999999999


Q ss_pred             CChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHH
Q 022295          202 TDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMT  281 (299)
Q Consensus       202 ~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T  281 (299)
                      .++.+.+++||+||+|||+|++|++++++++.++||++.++..+  .++| |+|||+||+.+.+++.++||+||||||+|
T Consensus        79 ~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~prdvd--~~~~-~~~G~~d~~~~~~~~~~~~~~pggvgp~t  155 (168)
T cd01080          79 KNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVPD--KSGG-KLVGDVDFESAKEKASAITPVPGGVGPMT  155 (168)
T ss_pred             hhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCCccc--ccCC-CeeCCcCHHHHHhhccCcCCCCCcChHHH
Confidence            99999999999999999999999999999999999999999755  2234 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 022295          282 VAMLLRNTLDGAK  294 (299)
Q Consensus       282 ~a~L~~n~v~a~~  294 (299)
                      +++||+|++++++
T Consensus       156 ~a~l~~n~~~~~~  168 (168)
T cd01080         156 VAMLMKNTVEAAK  168 (168)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998863

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=100.00  E-value=1e-35  Score=244.04  Aligned_cols=117  Identities=53%  Similarity=0.807  Sum_probs=103.3

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++|+||++|++|+++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.+.||+++++++|++.|
T Consensus         1 ~iL~Gk~va~~i~~~l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   79 (117)
T PF00763_consen    1 KILDGKPVAKEIKEELKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELI   79 (117)
T ss_dssp             EE--HHHHHHHHHHHHHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHH
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHH
Confidence            48999999999999999999999988 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCC
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD  127 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVD  127 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|.||||
T Consensus        80 ~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVD  117 (117)
T PF00763_consen   80 EKLNEDPSVHGILVQLPLPKHIDERKILEAIDPEKDVD  117 (117)
T ss_dssp             HHHHH-TT-SEEEEESSSSTTSHHHHHHHTS-GGGBTT
T ss_pred             HHHhCCCCCCEEEEcCCCCCCccHHHHHhccCcccCCC
Confidence            99999999999999999999999999999999999998

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=99.90  E-value=1e-22  Score=190.51  Aligned_cols=224  Identities=17%  Similarity=0.203  Sum_probs=175.9

Q ss_pred             EEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCC---CCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccC
Q 022295           44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ---VSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI  120 (299)
Q Consensus        44 ii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~---~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i  120 (299)
                      .-++|+.-+....=.+++.+++++|+++.|..|+-+   ++.++|.+.++.+.. .++.|++|++|+++.+  .++++.+
T Consensus         8 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~-~~~~G~nVTiP~K~~v--~~~~D~~   84 (284)
T PRK12549          8 AGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAER-MGFAGLNITHPCKQAV--IPHLDEL   84 (284)
T ss_pred             EEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHh-cCCCEEEECcCCHHHH--HHHhccC
Confidence            345675433344456899999999999999998622   347789999998875 4899999999999777  6788888


Q ss_pred             Cc-cccCCCCCc-cc-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEE
Q 022295          121 SL-EKDVDGFHP-LN-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTI  196 (299)
Q Consensus       121 ~p-~KDVDg~~~-~n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv  196 (299)
                      +| .+.+.+++. ++ -|++. |++++      ..|+++.|+..+.++++|+|+|+|+|++ |++++..|...|+ +|++
T Consensus        85 ~~~A~~iGAvNTv~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~k~vlIlGaGGa-araia~aL~~~G~~~I~I  156 (284)
T PRK12549         85 SDDARALGAVNTVVFRDGRRI-GHNTD------WSGFAESFRRGLPDASLERVVQLGAGGA-GAAVAHALLTLGVERLTI  156 (284)
T ss_pred             CHHHHHhCCceEEEecCCEEE-EEcCC------HHHHHHHHHhhccCccCCEEEEECCcHH-HHHHHHHHHHcCCCEEEE
Confidence            88 778777643 33 34444 55554      7999999998777899999999999997 9999999999997 7999


Q ss_pred             EcCCCC----------------------ChhhhccCCcEEEEecCC-----CC-cCCCCccCCCeEEEEeeccCCCCCcc
Q 022295          197 VHSHTT----------------------DPESIVREADIVIAAAGQ-----AM-MIKGSWIKPGAAVIDVGTNAVDDSTK  248 (299)
Q Consensus       197 ~~~~t~----------------------~l~~~~~~ADIVIsa~g~-----p~-~i~~~~vk~gavVIDvg~~~~~~~~~  248 (299)
                      ++++..                      ++.+.++++|+||++|+.     +. .++.++++++.+|+|+.|+|.+++  
T Consensus       157 ~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~--  234 (284)
T PRK12549        157 FDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETE--  234 (284)
T ss_pred             ECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCH--
Confidence            987521                      223356789999988642     22 367788999999999999998763  


Q ss_pred             CCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       249 ~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                                 |-..++..|+  ++-+|.+     ||++|.+.+++.|++
T Consensus       235 -----------ll~~A~~~G~--~~~~G~~-----ML~~Qa~~~f~~wtg  266 (284)
T PRK12549        235 -----------LLRAARALGC--RTLDGGG-----MAVFQAVDAFELFTG  266 (284)
T ss_pred             -----------HHHHHHHCCC--eEecCHH-----HHHHHHHHHHHHhcC
Confidence                       6677788887  5566777     999999999999986

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=99.89  E-value=1.6e-22  Score=189.49  Aligned_cols=222  Identities=20%  Similarity=0.305  Sum_probs=174.8

Q ss_pred             EEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-
Q 022295           44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-  122 (299)
Q Consensus        44 ii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-  122 (299)
                      .-++|+.-+...-=.+++.+++++|+++.|..|+  +.+++|.+.++.+.. .++.|++|++|++..+  .++++.++| 
T Consensus        12 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~v--~~~ld~~~~~   86 (289)
T PRK12548         12 LGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFD--IPVDKVPDAIKAIKT-FNMRGANVTMPCKSEA--AKYMDELSPA   86 (289)
T ss_pred             EEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEe--cCHHHHHHHHHHHHH-CCCCEEEECccCHHHH--HHHhhcCCHH
Confidence            3456854333333458999999999999999996  778889999999876 4799999999999776  778888888 


Q ss_pred             cccCCCCCc-cc-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcC
Q 022295          123 EKDVDGFHP-LN-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHS  199 (299)
Q Consensus       123 ~KDVDg~~~-~n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~  199 (299)
                      .+-+.+++. ++ -|++. |++++      ..|+++.|++++.+++||+++|+|+|++ |++++..|+..|++ |++++|
T Consensus        87 A~~iGavNTi~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~k~vlI~GAGGa-grAia~~La~~G~~~V~I~~R  158 (289)
T PRK12548         87 ARIIGAVNTIVNDDGKLT-GHITD------GLGFVRNLREHGVDVKGKKLTVIGAGGA-ATAIQVQCALDGAKEITIFNI  158 (289)
T ss_pred             HHHhCceeEEEeECCEEE-EEecC------HHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeC
Confidence            777776643 23 35554 65555      7999999999988999999999999987 99999999999985 999987


Q ss_pred             CC---C---------------------C------hhhhccCCcEEEEecC---CCC----cC-CCCccCCCeEEEEeecc
Q 022295          200 HT---T---------------------D------PESIVREADIVIAAAG---QAM----MI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       200 ~t---~---------------------~------l~~~~~~ADIVIsa~g---~p~----~i-~~~~vk~gavVIDvg~~  241 (299)
                      +.   .                     +      +.+.+..+|+||++|+   .|+    .+ +.+++.++.+|+|+.|+
T Consensus       159 ~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~  238 (289)
T PRK12548        159 KDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYN  238 (289)
T ss_pred             CchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCC
Confidence            63   1                     0      1123456799998885   232    24 55789999999999999


Q ss_pred             CCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          242 AVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       242 ~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      |.+++             |-..++..|+  ++-+|.+     ||++|.+++++.|++
T Consensus       239 P~~T~-------------ll~~A~~~G~--~~~~G~~-----ML~~Qa~~~f~lwtg  275 (289)
T PRK12548        239 PKKTK-------------LLEDAEAAGC--KTVGGLG-----MLLWQGAEAYKLYTG  275 (289)
T ss_pred             CCCCH-------------HHHHHHHCCC--eeeCcHH-----HHHHHHHHHHHHhcC
Confidence            98763             6677888887  5667777     999999999999986

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=99.89  E-value=1.4e-22  Score=188.71  Aligned_cols=220  Identities=21%  Similarity=0.320  Sum_probs=174.1

Q ss_pred             EECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cc
Q 022295           46 IVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EK  124 (299)
Q Consensus        46 ~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~K  124 (299)
                      .+|+.-+-..-=.+++.+++++|+++.|..|.  +.+++|.+.++.+... ++.|++|++|++..+  .++++.++| .+
T Consensus        10 viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~K~~~--~~~~d~~~~~A~   84 (278)
T PRK00258         10 VIGNPIAHSKSPLIHNAAFKQLGLDGVYLAIL--VPPEDLEDAVKGFFAL-GGRGANVTVPFKEAA--FALADELSERAR   84 (278)
T ss_pred             EECCchhcccCHHHHHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHHhC-CCCEEEECcCCHHHH--HHHhhcCCHHHH
Confidence            45743222233357899999999999999985  7778899999999875 799999999999776  778888888 78


Q ss_pred             cCCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHh-hCCCcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCC
Q 022295          125 DVDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKR-SGVTIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSH  200 (299)
Q Consensus       125 DVDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~-~~~~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~  200 (299)
                      .+..++.+ + -|++. |+++      +..|+++.|++ .+.++++|+|+|+|+|++ |+.++..|..+| ++|++++|+
T Consensus        85 ~igavNtv~~~~g~l~-G~NT------D~~G~~~~l~~~~~~~~~~k~vlVlGaGg~-a~ai~~aL~~~g~~~V~v~~R~  156 (278)
T PRK00258         85 LIGAVNTLVLEDGRLI-GDNT------DGIGFVRALEERLGVDLKGKRILILGAGGA-ARAVILPLLDLGVAEITIVNRT  156 (278)
T ss_pred             HhCCceEEEeeCCEEE-EEcc------cHHHHHHHHHhccCCCCCCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEEeCC
Confidence            87777433 4 24443 5544      48999999986 678999999999999886 999999999999 689999876


Q ss_pred             CCC-------------------hhhhccCCcEEEEecCCCC-------cCCCCccCCCeEEEEeeccCCCCCccCCCcee
Q 022295          201 TTD-------------------PESIVREADIVIAAAGQAM-------MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRL  254 (299)
Q Consensus       201 t~~-------------------l~~~~~~ADIVIsa~g~p~-------~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl  254 (299)
                      ...                   +.+.+.++|+||++|+...       .++.++++++.+|+|+.|+|.+++        
T Consensus       157 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~--------  228 (278)
T PRK00258        157 VERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTP--------  228 (278)
T ss_pred             HHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCH--------
Confidence            321                   1244578999999987431       245678999999999999987652        


Q ss_pred             eccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          255 VGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       255 ~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                           |.+.+++.|+  ++-+|.+     ||++|.+.+++.|++
T Consensus       229 -----ll~~A~~~G~--~~~~G~~-----Ml~~Qa~~~f~~wtg  260 (278)
T PRK00258        229 -----FLAWAKAQGA--RTIDGLG-----MLVHQAAEAFELWTG  260 (278)
T ss_pred             -----HHHHHHHCcC--eecCCHH-----HHHHHHHHHHHHHcC
Confidence                 6677888887  5667777     999999999999986

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=99.89  E-value=2.1e-22  Score=188.70  Aligned_cols=221  Identities=19%  Similarity=0.243  Sum_probs=172.9

Q ss_pred             EEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-c
Q 022295           45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-E  123 (299)
Q Consensus        45 i~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~  123 (299)
                      -++|+.-+....=.+++.+++++|+++.|..|+  +.+++|.+.++.++.. ++.|++|++|++..+  ..+++.++| .
T Consensus        11 gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~l~~~-~~~G~nVTiP~K~~~--~~~~D~l~~~A   85 (288)
T PRK12749         11 GLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFE--VDNDSFPGAIEGLKAL-KMRGTGVSMPNKQLA--CEYVDELTPAA   85 (288)
T ss_pred             EEECCCcccccCHHHHHHHHHHcCCCeEEEEEe--cCHHHHHHHHHHHHhc-CCCEEEECcCCHHHH--HHHhccCCHHH
Confidence            346743333333458999999999999999986  7788999999999764 799999999999766  778888888 7


Q ss_pred             ccCCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295          124 KDVDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH  200 (299)
Q Consensus       124 KDVDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~  200 (299)
                      +.+.+++.+ + -|++. |+++|      ..|+++.|++.+.+++||+++|+|+|++ +|+++..|..+|+ .|+|++|+
T Consensus        86 ~~iGAVNTv~~~~g~l~-G~NTD------~~Gf~~~l~~~~~~~~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~nRt  157 (288)
T PRK12749         86 KLVGAINTIVNDDGYLR-GYNTD------GTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRR  157 (288)
T ss_pred             HHhCceeEEEccCCEEE-EEecC------HHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            887776432 2 34544 55454      7999999999999999999999999998 9999999999996 89999986


Q ss_pred             CC-----------------------Ch------hhhccCCcEEEEecCC---CC----c-CCCCccCCCeEEEEeeccCC
Q 022295          201 TT-----------------------DP------ESIVREADIVIAAAGQ---AM----M-IKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       201 t~-----------------------~l------~~~~~~ADIVIsa~g~---p~----~-i~~~~vk~gavVIDvg~~~~  243 (299)
                      ..                       ++      .+.+.++|+||++|+.   |+    + ++.+.++++.+|+|+.|+|.
T Consensus       158 ~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~  237 (288)
T PRK12749        158 DEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPH  237 (288)
T ss_pred             ccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCc
Confidence            21                       01      1134578999988862   32    1 24466889999999999998


Q ss_pred             CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +++             |-..++..|+  ++-+|.+     ||++|.+.+++.|++
T Consensus       238 ~T~-------------ll~~A~~~G~--~~~~Gl~-----ML~~Qa~~~f~lwtg  272 (288)
T PRK12749        238 MTK-------------LLQQAQQAGC--KTIDGYG-----MLLWQGAEQFTLWTG  272 (288)
T ss_pred             cCH-------------HHHHHHHCCC--eEECCHH-----HHHHHHHHHHHHhcC
Confidence            763             6677788887  4555666     999999999999986

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=99.89  E-value=2.4e-22  Score=186.94  Aligned_cols=223  Identities=15%  Similarity=0.176  Sum_probs=174.9

Q ss_pred             CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHH
Q 022295           38 KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVL  117 (299)
Q Consensus        38 ~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~  117 (299)
                      ..++|..=++| +|-|++-. +++.+++++|+++.|..|+    .++|.+.++.+.. .++.|++|++|+++.+  ..++
T Consensus         7 ~~~~~~~gliG-~P~~~Sp~-ihn~~f~~~gl~~~Y~~~~----~~~l~~~~~~l~~-~~~~G~nVT~P~K~~~--~~~l   77 (272)
T PRK12550          7 KDTQLCISLAA-RPSNFGTR-FHNYLYEALGLNFLYKAFT----TTDLTAAIGGVRA-LGIRGCAVSMPFKEAV--IPLV   77 (272)
T ss_pred             CCceEEEEEEc-cchhcCHH-HHHHHHHHcCCCcEEEecC----HhHHHHHHHHHHh-cCCCEEEECcCCHHHH--HHHh
Confidence            45676555678 45777766 9999999999999999985    3678888888876 3799999999999777  7788


Q ss_pred             ccCCc-cccCCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-e
Q 022295          118 GEISL-EKDVDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-T  193 (299)
Q Consensus       118 ~~i~p-~KDVDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-t  193 (299)
                      +.++| .+.+.+++.+ + -|++. |++++      ..|+++.|++.+.+ .+|+++|+|+|++ +|+++..|.+.|+ +
T Consensus        78 D~l~~~A~~iGAVNTi~~~~g~l~-G~NTD------~~Gf~~~L~~~~~~-~~~~vlilGaGGa-arAi~~aL~~~g~~~  148 (272)
T PRK12550         78 DELDPSAQAIESVNTIVNTDGHLK-AYNTD------YIAIAKLLASYQVP-PDLVVALRGSGGM-AKAVAAALRDAGFTD  148 (272)
T ss_pred             hcCCHHHHHhCCeeEEEeeCCEEE-EEecC------HHHHHHHHHhcCCC-CCCeEEEECCcHH-HHHHHHHHHHCCCCE
Confidence            88888 7887776432 3 34443 55444      79999999988876 4679999999998 9999999999997 6


Q ss_pred             EEEEcCCCCChh-----------hh--ccCCcEEEEecC---CCC------cCCCCccCCCeEEEEeeccCCCCCccCCC
Q 022295          194 VTIVHSHTTDPE-----------SI--VREADIVIAAAG---QAM------MIKGSWIKPGAAVIDVGTNAVDDSTKKSG  251 (299)
Q Consensus       194 Vtv~~~~t~~l~-----------~~--~~~ADIVIsa~g---~p~------~i~~~~vk~gavVIDvg~~~~~~~~~~~g  251 (299)
                      |+|++|+....+           +.  ...+|+||+||+   .|+      .++.++++++.+|+|+.|+|.+++     
T Consensus       149 i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~-----  223 (272)
T PRK12550        149 GTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETP-----  223 (272)
T ss_pred             EEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCH-----
Confidence            999998632111           11  245899998886   221      367788999999999999997763     


Q ss_pred             ceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          252 YRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       252 ~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                              |-..++..|+  ++-.|.+     ||++|.+++++.|++
T Consensus       224 --------ll~~A~~~G~--~~i~Gl~-----MLi~Qa~~~f~lwtg  255 (272)
T PRK12550        224 --------LIRYARARGK--TVITGAE-----VIALQAVEQFVLYTG  255 (272)
T ss_pred             --------HHHHHHHCcC--eEeCCHH-----HHHHHHHHHHHHHhC
Confidence                    6677788887  5556777     999999999999986

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=99.89  E-value=3.5e-22  Score=186.51  Aligned_cols=210  Identities=22%  Similarity=0.327  Sum_probs=171.2

Q ss_pred             HHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cccCCCC-Ccccc
Q 022295           57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGF-HPLNI  134 (299)
Q Consensus        57 ~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KDVDg~-~~~n~  134 (299)
                      =.+++..++++|+++.|..|.  +..++|.+.++.+. +.++.|.+|++|+++.+  ..+++.+++ .+-+..+ |.++.
T Consensus        22 P~~Hn~~~~~lGl~~~Y~a~~--v~~~~l~~~v~~~~-~~g~~G~NVTiP~Ke~~--~~~lD~l~~~A~~iGAVNTl~~~   96 (283)
T COG0169          22 PRMHNAAFRALGLDYVYLAFE--VPPEDLPEAVSGIR-ALGFRGLNVTIPFKEAA--LPLLDELSPRARLIGAVNTLVRE   96 (283)
T ss_pred             HHHHHHHHHHcCCCceEEEee--cCHHHHHHHHHHHH-hcCCCeeEECCccHHHH--HHHHhcCCHHHHHhCCceEEEEc
Confidence            458999999999999999996  67899999999998 57999999999999777  778899988 7777776 44454


Q ss_pred             --cccccCCCCCccccCCHHHHHHHHHhhC--CCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCCC---h--
Q 022295          135 --GKLAMKGRDPLFLPCTPKGCLELLKRSG--VTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTTD---P--  204 (299)
Q Consensus       135 --g~l~~g~~~~~~~PcT~~av~~ll~~~~--~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~~---l--  204 (299)
                        |++. |+++|      ..|+.+.|++++  .+.+|++|+|+|+||+ +|+++..|++.|+ +|+|+||+...   |  
T Consensus        97 ~~g~l~-G~NTD------~~G~~~~L~~~~~~~~~~~~~vlilGAGGA-arAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169          97 DDGKLR-GYNTD------GIGFLRALKEFGLPVDVTGKRVLILGAGGA-ARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             cCCEEE-EEcCC------HHHHHHHHHhcCCCcccCCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence              5555 66666      799999999987  5677999999999998 9999999999995 79999986311   1  


Q ss_pred             --------------h--hhccCCcEEEEecCC---CC----cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCch
Q 022295          205 --------------E--SIVREADIVIAAAGQ---AM----MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFH  261 (299)
Q Consensus       205 --------------~--~~~~~ADIVIsa~g~---p~----~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~  261 (299)
                                    .  +...++|+||++|+.   ++    +++.+.++++.+|+|+.|+|.+++             |-
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~Tp-------------lL  235 (283)
T COG0169         169 LFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETP-------------LL  235 (283)
T ss_pred             HhhhcccccccccccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCH-------------HH
Confidence                          1  111258999988872   32    456788999999999999998774             66


Q ss_pred             hhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhcC
Q 022295          262 EACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL  299 (299)
Q Consensus       262 ~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~~  299 (299)
                      +.++..++.  +-.|.|     ||++|.+++++.|++.
T Consensus       236 ~~A~~~G~~--~idGl~-----Mlv~Qaa~aF~lwtg~  266 (283)
T COG0169         236 REARAQGAK--TIDGLG-----MLVHQAAEAFELWTGV  266 (283)
T ss_pred             HHHHHcCCe--EECcHH-----HHHHHHHHHHHHHhCC
Confidence            778887875  445666     9999999999999863

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=99.88  E-value=9.3e-22  Score=183.73  Aligned_cols=222  Identities=15%  Similarity=0.184  Sum_probs=170.4

Q ss_pred             EEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-
Q 022295           44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-  122 (299)
Q Consensus        44 ii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-  122 (299)
                      .-++|+.-+...-=.+++.+++++|+++.|..|+. .+.++|.+.++.+..  ++.|++|++|++..+  .++++.++| 
T Consensus         8 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-~~~~~l~~~~~~~~~--~~~G~nVT~P~K~~~--~~~~d~~~~~   82 (282)
T TIGR01809         8 AFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFET-CSAEELKEVLSGFGP--QFGGASVTIPLKFAI--LRFADEHTDR   82 (282)
T ss_pred             EEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeec-CCHHHHHHHHHhcCC--CCcEEEECCCCHHHH--HHHhhcCCHH
Confidence            45578533333334588999999999999999862 235789999998843  799999999999766  678888888 


Q ss_pred             cccCCCCCcc-c--ccccccCCCCCccccCCHHHHHHHHHhhCC--CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEE
Q 022295          123 EKDVDGFHPL-N--IGKLAMKGRDPLFLPCTPKGCLELLKRSGV--TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTI  196 (299)
Q Consensus       123 ~KDVDg~~~~-n--~g~l~~g~~~~~~~PcT~~av~~ll~~~~~--~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv  196 (299)
                      .|-+..++.+ +  -|++. |+++|      ..|+++.|++.+.  +++||+|+|||+|++ ||.++..|...|+ +|+|
T Consensus        83 A~~iGAVNTv~~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~~~k~vlvlGaGGa-arai~~aL~~~G~~~i~I  154 (282)
T TIGR01809        83 ASLIGSVNTLLRTQNGIWK-GDNTD------WDGIAGALANIGKFEPLAGFRGLVIGAGGT-SRAAVYALASLGVTDITV  154 (282)
T ss_pred             HHHhCceeEEEEcCCCcEE-EecCC------HHHHHHHHHhhCCccccCCceEEEEcCcHH-HHHHHHHHHHcCCCeEEE
Confidence            7787776433 3  24444 65555      7999999998874  689999999999997 9999999999996 7999


Q ss_pred             EcCCCC----------------------ChhhhccCCcEEEEecCCCCcCCCCc------------cCCCeEEEEeeccC
Q 022295          197 VHSHTT----------------------DPESIVREADIVIAAAGQAMMIKGSW------------IKPGAAVIDVGTNA  242 (299)
Q Consensus       197 ~~~~t~----------------------~l~~~~~~ADIVIsa~g~p~~i~~~~------------vk~gavVIDvg~~~  242 (299)
                      ++|+..                      ++.+.+.++|+||++|+....++.+.            ++++.+|+|+.|+|
T Consensus       155 ~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P  234 (282)
T TIGR01809       155 INRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDP  234 (282)
T ss_pred             EeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCC
Confidence            997521                      11234577899999998644343322            34678999999999


Q ss_pred             CCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          243 VDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       243 ~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      .+++             |...++..++  ++-+|.+     ||++|.+.+++.|++
T Consensus       235 ~~T~-------------ll~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg  270 (282)
T TIGR01809       235 WPTP-------------LVAIVSAAGW--RVISGLQ-----MLLHQGFAQFEQWTG  270 (282)
T ss_pred             CCCH-------------HHHHHHHCCC--EEECcHH-----HHHHHHHHHHHHHHC
Confidence            8763             6677888886  4556777     999999999999986

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=99.87  E-value=1.1e-21  Score=183.39  Aligned_cols=222  Identities=17%  Similarity=0.207  Sum_probs=173.1

Q ss_pred             EECCCcccHHHHHHHHHHHHHcCCceeeecCCCC---CCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc
Q 022295           46 IVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ---VSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL  122 (299)
Q Consensus        46 ~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~---~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p  122 (299)
                      ++|+.-+....=.+++.+++++|+++.|..|+-.   +++++|.+.++.+... ++.|++|++|++..+  ..+++.++|
T Consensus         9 liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~-~~~G~nVT~P~K~~~--~~~lD~l~~   85 (283)
T PRK14027          9 LIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYL-GFNGLNITHPYKQAV--LPLLDEVSE   85 (283)
T ss_pred             EECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhc-CCCEEEECccCHHHH--HHHhhhCCH
Confidence            4574333333345899999999999999998622   3457899999988764 899999999999776  778888988


Q ss_pred             -cccCCCCCcc-c--ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEE
Q 022295          123 -EKDVDGFHPL-N--IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIV  197 (299)
Q Consensus       123 -~KDVDg~~~~-n--~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~  197 (299)
                       .+.+..++.+ +  -|++. |+++|      ..|+++.|++.+.+++||+++|+|+||+ ||+++..|...|+ +++|+
T Consensus        86 ~A~~iGAVNTv~~~~~g~l~-G~NTD------~~Gf~~~L~~~~~~~~~k~vlilGaGGa-arAi~~aL~~~g~~~i~i~  157 (283)
T PRK14027         86 QATQLGAVNTVVIDATGHTT-GHNTD------VSGFGRGMEEGLPNAKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVA  157 (283)
T ss_pred             HHHHhCCceEEEECCCCcEE-EEcCC------HHHHHHHHHhcCcCcCCCeEEEECCcHH-HHHHHHHHHHCCCCEEEEE
Confidence             8888877543 3  35544 65555      7999999998767889999999999997 9999999999996 79999


Q ss_pred             cCCCC---Ch---------------------hhhccCCcEEEEecCC---CC---cCCCCccCCCeEEEEeeccCCCCCc
Q 022295          198 HSHTT---DP---------------------ESIVREADIVIAAAGQ---AM---MIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       198 ~~~t~---~l---------------------~~~~~~ADIVIsa~g~---p~---~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      +|+..   .+                     .+.+..+|+||++|+.   ++   .++.+.+.++.+|+|+.|+|.+++ 
T Consensus       158 nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-  236 (283)
T PRK14027        158 DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETE-  236 (283)
T ss_pred             cCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCH-
Confidence            87521   01                     1234568999988862   22   256677889999999999998773 


Q ss_pred             cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                                  |-..++..|+  ++-+|.+     ||++|.+++++.|++
T Consensus       237 ------------ll~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lw~G  268 (283)
T PRK14027        237 ------------LLKAARALGC--ETLDGTR-----MAIHQAVDAFRLFTG  268 (283)
T ss_pred             ------------HHHHHHHCCC--EEEccHH-----HHHHHHHHHHHHHhC
Confidence                        6677888887  4556777     999999999999986

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=99.87  E-value=1.4e-21  Score=181.02  Aligned_cols=219  Identities=21%  Similarity=0.247  Sum_probs=170.4

Q ss_pred             ECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-ccc
Q 022295           47 VGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKD  125 (299)
Q Consensus        47 vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KD  125 (299)
                      +|+.-+-..-=.+++.+++++|+++.|..|+  +.+++|.+.++.+... ++.|++|++|+++.+  .++++.++| .+-
T Consensus         6 iG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~K~~~--~~~~d~~~~~A~~   80 (270)
T TIGR00507         6 IGNPIAHSKSPLIHNAFFKQLGLEGPYIAFL--VPPDDLEDALSGFFAL-GFKGANVTSPFKEEA--FQFLDEIDERAKL   80 (270)
T ss_pred             ECCccccccCHHHHHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHHhc-CCCEEEECcCCHHHH--HHHhhhCCHHHHH
Confidence            4533222333458899999999999999996  7778899999999764 799999999999766  678888888 778


Q ss_pred             CCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC
Q 022295          126 VDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD  203 (299)
Q Consensus       126 VDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~  203 (299)
                      +.+++.+ + -|++. |+++      +..|+++.|++.+...++|+++|+|.|++ |++++..|+..|+.|++++++...
T Consensus        81 ~gavNti~~~~g~l~-g~NT------D~~G~~~~l~~~~~~~~~k~vliiGaGg~-g~aia~~L~~~g~~v~v~~R~~~~  152 (270)
T TIGR00507        81 AGAVNTLKLEDGKLV-GYNT------DGIGLVSDLERLIPLRPNQRVLIIGAGGA-ARAVALPLLKADCNVIIANRTVSK  152 (270)
T ss_pred             hCCceEEEeeCCEEE-EEcC------CHHHHHHHHHhcCCCccCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCHHH
Confidence            7776433 3 34443 5444      48999999998777788999999999875 999999999999999999876321


Q ss_pred             h------------------hh-hccCCcEEEEecCC---CC----cCCCCccCCCeEEEEeeccCCCCCccCCCceeecc
Q 022295          204 P------------------ES-IVREADIVIAAAGQ---AM----MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGD  257 (299)
Q Consensus       204 l------------------~~-~~~~ADIVIsa~g~---p~----~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GD  257 (299)
                      .                  .+ ...++|+||++|+.   +.    .++.++++++.+|+|+.|++.+++           
T Consensus       153 ~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~-----------  221 (270)
T TIGR00507       153 AEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETP-----------  221 (270)
T ss_pred             HHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCH-----------
Confidence            1                  11 23578999999985   22    245567899999999999986552           


Q ss_pred             CCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          258 VDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       258 vdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                        |.+.++..++  ++-.|.+     ||++|.+.+++.|++
T Consensus       222 --ll~~A~~~G~--~~vdG~~-----Ml~~Qa~~~f~~w~g  253 (270)
T TIGR00507       222 --FLAEAKSLGT--KTIDGLG-----MLVAQAALAFELWTG  253 (270)
T ss_pred             --HHHHHHHCCC--eeeCCHH-----HHHHHHHHHHHHHcC
Confidence              5677777786  4556777     999999999999986

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=99.82  E-value=3.2e-19  Score=179.77  Aligned_cols=220  Identities=19%  Similarity=0.248  Sum_probs=169.6

Q ss_pred             EEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-
Q 022295           44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-  122 (299)
Q Consensus        44 ii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-  122 (299)
                      .-++|+.-+-..-=.+++.+++++|+++.|..|+  +  ++|.+.++.++. +++.|++|++|++..+  ..+++.++| 
T Consensus       255 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~--v--~~l~~~~~~l~~-~~~~G~nVTiP~K~~v--~~~lD~~~~~  327 (529)
T PLN02520        255 YGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLL--V--DDLAKFLQTYSS-PDFAGFSCTIPHKEDA--LKCCDEVDPI  327 (529)
T ss_pred             EEEEcCCcccccCHHHHHHHHHHCCCCcEEEEee--h--hhHHHHHHHHhh-CCCCEEEECcCCHHHH--HHHhccCCHH
Confidence            3467853333333368999999999999999996  3  467777877765 5899999999999777  778889998 


Q ss_pred             cccCCCCCcc-c---ccccccCCCCCccccCCHHHHHHHHHhh----------CCCcCCcEEEEEcCCccchHHHHHHHh
Q 022295          123 EKDVDGFHPL-N---IGKLAMKGRDPLFLPCTPKGCLELLKRS----------GVTIKGKRAVVVGRSNIVGLPVSLLLL  188 (299)
Q Consensus       123 ~KDVDg~~~~-n---~g~l~~g~~~~~~~PcT~~av~~ll~~~----------~~~l~gk~vvViG~s~~vG~pla~lL~  188 (299)
                      .+.+.+++.+ +   -|++. |++++      ..|+++.|++.          +.++++|+++|+|+|++ |++++..|+
T Consensus       328 A~~iGAVNTvv~~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGa-grAia~~L~  399 (529)
T PLN02520        328 AKSIGAINTIIRRPSDGKLV-GYNTD------YIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGA-GKALAYGAK  399 (529)
T ss_pred             HHHhCCceEEEEeCCCCEEE-EEccc------HHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHH-HHHHHHHHH
Confidence            8888887543 3   25554 65555      79999999852          56789999999999986 999999999


Q ss_pred             hCCCeEEEEcCCCCC---h--------------hhh-ccCCcEEEEecC---CCC----cCCCCccCCCeEEEEeeccCC
Q 022295          189 KADATVTIVHSHTTD---P--------------ESI-VREADIVIAAAG---QAM----MIKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       189 ~~gatVtv~~~~t~~---l--------------~~~-~~~ADIVIsa~g---~p~----~i~~~~vk~gavVIDvg~~~~  243 (299)
                      ++|++|++++++...   +              .+. ...+|+||++++   .|+    .++.++++++.+|+|+.|+|.
T Consensus       400 ~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~  479 (529)
T PLN02520        400 EKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPK  479 (529)
T ss_pred             HCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCC
Confidence            999999999875221   1              111 235789997775   232    266788999999999999998


Q ss_pred             CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +++             |-..++.+|+  ++-.|.+     ||++|.+.+++.|++
T Consensus       480 ~T~-------------ll~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg  514 (529)
T PLN02520        480 ITR-------------LLREAEESGA--IIVSGTE-----MFIRQAYEQFERFTG  514 (529)
T ss_pred             cCH-------------HHHHHHHCCC--eEeCcHH-----HHHHHHHHHHHHHhC
Confidence            763             5677888887  5556666     999999999999986

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=99.81  E-value=3.7e-19  Score=177.31  Aligned_cols=218  Identities=17%  Similarity=0.250  Sum_probs=169.0

Q ss_pred             EEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-c
Q 022295           45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-E  123 (299)
Q Consensus        45 i~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~  123 (299)
                      -.+|+.-+-..-=.+++.+++++|+++.|..|+  +.+++|.+.++.+.. +++.|++|++|++..+  ..+++.++| .
T Consensus       219 ~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~v--~~~~d~~~~~A  293 (477)
T PRK09310        219 GLIGDPVDRSISHLSHNPLFSQLSLNCPYIKLP--LTPQELPKFFSTIRD-LPFLGLSVTMPLKTAV--LDFLDKLDPSV  293 (477)
T ss_pred             EEECCCcccccCHHHHHHHHHHcCCCcEEEEee--cCHHHHHHHHHHHHh-CCCCEEEECccCHHHH--HHHhccCCHHH
Confidence            467854333333457999999999999999996  777788888888866 4799999999999766  678888888 7


Q ss_pred             ccCCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          124 KDVDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       124 KDVDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +-+.+++.+ + -|++. |++++      ..|+++.|++.+.+++|++++|+|.|++ |++++..|.+.|++|++++++.
T Consensus       294 ~~iGAVNTv~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~k~vlIiGaGgi-G~aia~~L~~~G~~V~i~~R~~  365 (477)
T PRK09310        294 KLCGSCNTLVFRNGKIE-GYNTD------GEGLFSLLKQKNIPLNNQHVAIVGAGGA-AKAIATTLARAGAELLIFNRTK  365 (477)
T ss_pred             HHhCcceEEEeeCCEEE-EEecC------HHHHHHHHHhcCCCcCCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCH
Confidence            888777433 3 35554 65555      7999999999999999999999999875 9999999999999999998753


Q ss_pred             CChh----------------hhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhh
Q 022295          202 TDPE----------------SIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK  265 (299)
Q Consensus       202 ~~l~----------------~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~  265 (299)
                      ...+                ..+.++|+||++++..-.+. +.+.  .+|+|+.|+|.+++             |...++
T Consensus       366 ~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~~~-~~l~--~~v~D~~Y~P~~T~-------------ll~~A~  429 (477)
T PRK09310        366 AHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVTIP-KAFP--PCVVDINTLPKHSP-------------YTQYAR  429 (477)
T ss_pred             HHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCcch-hHHh--hhEEeccCCCCCCH-------------HHHHHH
Confidence            2111                11467899999997543333 2333  38999999987652             567777


Q ss_pred             hhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          266 VAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       266 ~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      ..|+  ++-+|.+     ||++|.+.+++.|++
T Consensus       430 ~~G~--~~~~G~~-----Ml~~Qa~~~f~lw~g  455 (477)
T PRK09310        430 SQGS--SIIYGYE-----MFAEQALLQFRLWFP  455 (477)
T ss_pred             HCcC--EEECcHH-----HHHHHHHHHHHHHcC
Confidence            7887  4556777     999999999999986

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.61  E-value=3e-15  Score=140.87  Aligned_cols=130  Identities=25%  Similarity=0.390  Sum_probs=105.1

Q ss_pred             CHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------------ChhhhccCCc
Q 022295          150 TPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------------DPESIVREAD  212 (299)
Q Consensus       150 T~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------------~l~~~~~~AD  212 (299)
                      |+.+ +.+.++++++++.|++|+|+|.|.+ |++++..|...|++|++++++..                ++.+.++++|
T Consensus       134 ~aegav~~a~~~~~~~l~g~kvlViG~G~i-G~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aD  212 (296)
T PRK08306        134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRT-GMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKID  212 (296)
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCC
Confidence            4444 6677888899999999999999885 99999999999999999988742                4567789999


Q ss_pred             EEEEecCCCCcCCCCc---cCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhh---hceeccCCCCccHHHHHHHH
Q 022295          213 IVIAAAGQAMMIKGSW---IKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV---AGCVTPVPGGVGPMTVAMLL  286 (299)
Q Consensus       213 IVIsa~g~p~~i~~~~---vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~---a~~iTPVPGGVGp~T~a~L~  286 (299)
                      +||++++. .+++.++   +++|+++||+++++             |++||+.+.+.   +.+.+++||+|+|+|.+.++
T Consensus       213 iVI~t~p~-~~i~~~~l~~~~~g~vIIDla~~p-------------ggtd~~~a~~~Gv~~~~~~~lpg~vap~ta~~~~  278 (296)
T PRK08306        213 IIFNTIPA-LVLTKEVLSKMPPEALIIDLASKP-------------GGTDFEYAEKRGIKALLAPGLPGKVAPKTAGQIL  278 (296)
T ss_pred             EEEECCCh-hhhhHHHHHcCCCCcEEEEEccCC-------------CCcCeeehhhCCeEEEEECCCCccCCHHHHHHHH
Confidence            99999864 3466654   68999999999875             44678555443   44558999999999999999


Q ss_pred             HHHHHHHH
Q 022295          287 RNTLDGAK  294 (299)
Q Consensus       287 ~n~v~a~~  294 (299)
                      .|.+..+-
T Consensus       279 ~~~i~~~l  286 (296)
T PRK08306        279 ANVLSQLL  286 (296)
T ss_pred             HHHHHHHH
Confidence            99887663

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.50  E-value=9.1e-14  Score=130.41  Aligned_cols=128  Identities=27%  Similarity=0.424  Sum_probs=100.9

Q ss_pred             CCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------------ChhhhccCC
Q 022295          149 CTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------------DPESIVREA  211 (299)
Q Consensus       149 cT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------------~l~~~~~~A  211 (299)
                      +|+.+ +...++.+++++.||+++|+|.|++ |+.++..|...|++|++++++..                ++.+.++++
T Consensus       132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~i-G~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~a  210 (287)
T TIGR02853       132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGRT-GMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEI  210 (287)
T ss_pred             hHHHHHHHHHHHhcCCCCCCCEEEEEcChHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccC
Confidence            45555 5566677889999999999999985 99999999999999999987632                345678999


Q ss_pred             cEEEEecCCCCcCCCC---ccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhc---eecc-CCCCccHHHHHH
Q 022295          212 DIVIAAAGQAMMIKGS---WIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAG---CVTP-VPGGVGPMTVAM  284 (299)
Q Consensus       212 DIVIsa~g~p~~i~~~---~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~---~iTP-VPGGVGp~T~a~  284 (299)
                      |+||++++.+ +++.+   .+++++++||++++|             |.+|| +.+++.+   .+.| .||.|+|.|.+.
T Consensus       211 DiVint~P~~-ii~~~~l~~~k~~aliIDlas~P-------------g~tdf-~~Ak~~G~~a~~~~glPg~~ap~ta~~  275 (287)
T TIGR02853       211 DIVINTIPAL-VLTADVLSKLPKHAVIIDLASKP-------------GGTDF-EYAKKRGIKALLAPGLPGIVAPKTAGK  275 (287)
T ss_pred             CEEEECCChH-HhCHHHHhcCCCCeEEEEeCcCC-------------CCCCH-HHHHHCCCEEEEeCCCCcccCchhHHH
Confidence            9999998654 44543   468999999999976             34578 4455544   3335 899999999999


Q ss_pred             HHHHHHHH
Q 022295          285 LLRNTLDG  292 (299)
Q Consensus       285 L~~n~v~a  292 (299)
                      ++.|++..
T Consensus       276 i~~~~~~~  283 (287)
T TIGR02853       276 ILANVLSE  283 (287)
T ss_pred             HHHHHHHH
Confidence            99998864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=99.19  E-value=2e-11  Score=102.09  Aligned_cols=88  Identities=34%  Similarity=0.400  Sum_probs=70.1

Q ss_pred             HHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCC--------------------CChhhhccCCcEEE
Q 022295          157 LLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHT--------------------TDPESIVREADIVI  215 (299)
Q Consensus       157 ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t--------------------~~l~~~~~~ADIVI  215 (299)
                      +.++...+++|++++|||+|++ |+.++..|..+|++ |++++|+.                    .++.+.+.++|+||
T Consensus         2 la~~~~~~l~~~~vlviGaGg~-ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI   80 (135)
T PF01488_consen    2 LAKKKFGDLKGKRVLVIGAGGA-ARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVI   80 (135)
T ss_dssp             HHCTHHSTGTTSEEEEESSSHH-HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEE
T ss_pred             hhHHhcCCcCCCEEEEECCHHH-HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEE
Confidence            4445555899999999999997 99999999999986 99999862                    23446788999999


Q ss_pred             EecCCCCc-CCCCccCCC----eEEEEeeccCCCC
Q 022295          216 AAAGQAMM-IKGSWIKPG----AAVIDVGTNAVDD  245 (299)
Q Consensus       216 sa~g~p~~-i~~~~vk~g----avVIDvg~~~~~~  245 (299)
                      ++|+.+.. ++.+++++.    .+|+|+++++.-+
T Consensus        81 ~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   81 NATPSGMPIITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             E-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             EecCCCCcccCHHHHHHHHhhhhceeccccCCCCC
Confidence            99998864 899999887    5999999876533

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.18  E-value=4.6e-10  Score=94.46  Aligned_cols=127  Identities=24%  Similarity=0.426  Sum_probs=97.2

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCC-------------------ChhhhccC
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTT-------------------DPESIVRE  210 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~-------------------~l~~~~~~  210 (299)
                      ..|+.+.+++.++++++++++|+|.|++ |+.++..|.+.| ..|++++++..                   +..+.+.+
T Consensus         3 ~~g~~~a~~~~~~~~~~~~i~iiG~G~~-g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (155)
T cd01065           3 GLGFVRALEEAGIELKGKKVLILGAGGA-ARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAE   81 (155)
T ss_pred             HHHHHHHHHhhCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhcccc
Confidence            5799999999999999999999999775 999999999886 68999976521                   23344788


Q ss_pred             CcEEEEecCCCCc------CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHH
Q 022295          211 ADIVIAAAGQAMM------IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAM  284 (299)
Q Consensus       211 ADIVIsa~g~p~~------i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~  284 (299)
                      +|+||++++.+..      +....++++.+|+|+++.+..+             .+.+..+..+. +=++|      -.|
T Consensus        82 ~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-------------~l~~~~~~~g~-~~v~g------~~~  141 (155)
T cd01065          82 ADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-------------PLLKEARALGA-KTIDG------LEM  141 (155)
T ss_pred             CCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-------------HHHHHHHHCCC-ceeCC------HHH
Confidence            9999999986432      3334578999999999875322             24455555554 33555      459


Q ss_pred             HHHHHHHHHHHHhc
Q 022295          285 LLRNTLDGAKRVIE  298 (299)
Q Consensus       285 L~~n~v~a~~~~~~  298 (299)
                      |+.|.+++++.|++
T Consensus       142 ~~~q~~~~~~~~~~  155 (155)
T cd01065         142 LVYQAAEAFELWTG  155 (155)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999975

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=99.16  E-value=1.1e-10  Score=90.33  Aligned_cols=78  Identities=33%  Similarity=0.531  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHHhhC----CCcCCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCCCCChhhhccCCcEEEEecCCCCc
Q 022295          149 CTPKGCLELLKRSG----VTIKGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSHTTDPESIVREADIVIAAAGQAMM  223 (299)
Q Consensus       149 cT~~av~~ll~~~~----~~l~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~  223 (299)
                      ||+.++++.|++..    .++++|+++|+|+|. +|++++.+|.+. +.+|+++++            |++|+++|.+++
T Consensus         1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~-~g~~~a~~l~~~~~~~v~v~~r------------di~i~~~~~~~~   67 (86)
T cd05191           1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE-VGKGIAKLLADEGGKKVVLCDR------------DILVTATPAGVP   67 (86)
T ss_pred             ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEEcC------------CEEEEcCCCCCC
Confidence            78999999888764    459999999999977 599999999998 578999976            999999999999


Q ss_pred             CCC---CccCCCeEEEEee
Q 022295          224 IKG---SWIKPGAAVIDVG  239 (299)
Q Consensus       224 i~~---~~vk~gavVIDvg  239 (299)
                      +.+   .+++++.+|+|+.
T Consensus        68 ~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          68 VLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             chHHHHHhcCCCCEEEecC
Confidence            877   7789999999963

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.13  E-value=1.1e-10  Score=116.01  Aligned_cols=117  Identities=24%  Similarity=0.301  Sum_probs=90.4

Q ss_pred             HHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcEEEEecCCCC
Q 022295          156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       156 ~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      .+++..+..+.||+|+|+|.|. +|+++|+.|...|++|++|++.             ..++.+.++.||+||+++|.++
T Consensus       243 ~~~R~~~~~LaGKtVgVIG~G~-IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~  321 (476)
T PTZ00075        243 GIFRATDVMIAGKTVVVCGYGD-VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKD  321 (476)
T ss_pred             HHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCccc
Confidence            3445568899999999999998 5999999999999999999754             2356788999999999999999


Q ss_pred             cCCCCcc---CCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCC
Q 022295          223 MIKGSWI---KPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGG  276 (299)
Q Consensus       223 ~i~~~~v---k~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGG  276 (299)
                      +|+.+++   |+|++++++|....+...  .+-+..+|+|+.++.+.+..+| .|.|
T Consensus       322 iI~~e~~~~MKpGAiLINvGr~d~Ei~i--~aL~~~~~vdv~evep~v~~~~-~~~g  375 (476)
T PTZ00075        322 IITLEHMRRMKNNAIVGNIGHFDNEIQV--AELEAYPGIEIVEIKPQVDRYT-FPDG  375 (476)
T ss_pred             ccCHHHHhccCCCcEEEEcCCCchHHhH--HHHHhcCCceeecccCCCCeEE-eCCC
Confidence            9998777   999999999987421100  0012446788777777766665 5543

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.10  E-value=1.8e-10  Score=99.43  Aligned_cols=90  Identities=27%  Similarity=0.446  Sum_probs=65.8

Q ss_pred             HHHHHHH-HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcEEEEe
Q 022295          152 KGCLELL-KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       152 ~av~~ll-~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADIVIsa  217 (299)
                      +++++-+ +..+..+.||+++|+|.|.+ |+.+|+.|...||.|+|+...             +..+.+.+++||++|++
T Consensus         7 ~S~~d~i~r~t~~~l~Gk~vvV~GYG~v-G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta   85 (162)
T PF00670_consen    7 QSLVDGIMRATNLMLAGKRVVVIGYGKV-GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA   85 (162)
T ss_dssp             HHHHHHHHHHH-S--TTSEEEEE--SHH-HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred             hhHHHHHHhcCceeeCCCEEEEeCCCcc-cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence            4444444 45689999999999999995 999999999999999999765             24577899999999999


Q ss_pred             cCCCCcCCCCc---cCCCeEEEEeeccC
Q 022295          218 AGQAMMIKGSW---IKPGAAVIDVGTNA  242 (299)
Q Consensus       218 ~g~p~~i~~~~---vk~gavVIDvg~~~  242 (299)
                      ||..+.++.++   +|+|+++.++|...
T Consensus        86 TG~~~vi~~e~~~~mkdgail~n~Gh~d  113 (162)
T PF00670_consen   86 TGNKDVITGEHFRQMKDGAILANAGHFD  113 (162)
T ss_dssp             SSSSSSB-HHHHHHS-TTEEEEESSSST
T ss_pred             CCCccccCHHHHHHhcCCeEEeccCcCc
Confidence            99999998776   48999999999754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=99.00  E-value=8.2e-10  Score=108.04  Aligned_cols=121  Identities=21%  Similarity=0.276  Sum_probs=98.7

Q ss_pred             HHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCC-C
Q 022295          114 EKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKAD-A  192 (299)
Q Consensus       114 ~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~g-a  192 (299)
                      .-..++|+-.|-|-.-|..|.|.+-           -+.+++++.++...+|++|+++|||+|++ |..+|..|.++| .
T Consensus       136 ~lFqkAi~~gKrvRseT~I~~~~VS-----------i~saAv~lA~~~~~~L~~~~vlvIGAGem-~~lva~~L~~~g~~  203 (414)
T COG0373         136 RLFQKAISVGKRVRSETGIGKGAVS-----------ISSAAVELAKRIFGSLKDKKVLVIGAGEM-GELVAKHLAEKGVK  203 (414)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCccc-----------hHHHHHHHHHHHhcccccCeEEEEcccHH-HHHHHHHHHhCCCC
Confidence            3455677777777666666655443           26899999999999999999999999997 999999999999 5


Q ss_pred             eEEEEcCCC-----------------CChhhhccCCcEEEEecCCCCc-CCCCccCCC------eEEEEeeccCCCCC
Q 022295          193 TVTIVHSHT-----------------TDPESIVREADIVIAAAGQAMM-IKGSWIKPG------AAVIDVGTNAVDDS  246 (299)
Q Consensus       193 tVtv~~~~t-----------------~~l~~~~~~ADIVIsa~g~p~~-i~~~~vk~g------avVIDvg~~~~~~~  246 (299)
                      .|+|+||+-                 .++.+++.+||+|||+||.|++ |+.+++...      .++||++.+|+-++
T Consensus       204 ~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~  281 (414)
T COG0373         204 KITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEP  281 (414)
T ss_pred             EEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence            899999872                 4677899999999999999997 688887443      58999999987554

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.91  E-value=4.8e-09  Score=103.26  Aligned_cols=96  Identities=17%  Similarity=0.260  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC------------------CChhhhccC
Q 022295          150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT------------------TDPESIVRE  210 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t------------------~~l~~~~~~  210 (299)
                      .+.+.+++.++.-.++.||+|+|||+|++ |+.++..|..+|+ .+++++|+.                  .++.+.+.+
T Consensus       164 v~~~Av~la~~~~~~l~~kkvlviGaG~~-a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~  242 (414)
T PRK13940        164 VAFSAITLAKRQLDNISSKNVLIIGAGQT-GELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKK  242 (414)
T ss_pred             HHHHHHHHHHHHhcCccCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhcc
Confidence            35678899988877899999999999997 9999999999995 799999762                  124567899


Q ss_pred             CcEEEEecCCCCc-CCCCccCC-CeEEEEeeccCCCCC
Q 022295          211 ADIVIAAAGQAMM-IKGSWIKP-GAAVIDVGTNAVDDS  246 (299)
Q Consensus       211 ADIVIsa~g~p~~-i~~~~vk~-gavVIDvg~~~~~~~  246 (299)
                      ||+||+||++|++ |+.++++. ..++||++.++.-++
T Consensus       243 aDiVI~aT~a~~~vi~~~~~~~~~~~~iDLavPRdidp  280 (414)
T PRK13940        243 ADIIIAAVNVLEYIVTCKYVGDKPRVFIDISIPQALDP  280 (414)
T ss_pred             CCEEEECcCCCCeeECHHHhCCCCeEEEEeCCCCCCCc
Confidence            9999999999997 68888753 478999999987664

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.90  E-value=4.2e-09  Score=95.70  Aligned_cols=94  Identities=28%  Similarity=0.404  Sum_probs=79.7

Q ss_pred             CCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe---EEEEcCC----CC-------------------
Q 022295          149 CTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT---VTIVHSH----TT-------------------  202 (299)
Q Consensus       149 cT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat---Vtv~~~~----t~-------------------  202 (299)
                      .+-.|++..++..+.++++++++|+|+|++ |+.++.+|...|++   +++++|+    ..                   
T Consensus         7 v~lAG~~~al~~~g~~l~~~rvlvlGAGgA-g~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~   85 (226)
T cd05311           7 VTLAGLLNALKLVGKKIEEVKIVINGAGAA-GIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE   85 (226)
T ss_pred             HHHHHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC
Confidence            456789999999999999999999999997 99999999999975   9999987    11                   


Q ss_pred             ----ChhhhccCCcEEEEecCCCCcCCCCccC---CCeEEEEeeccCCCC
Q 022295          203 ----DPESIVREADIVIAAAGQAMMIKGSWIK---PGAAVIDVGTNAVDD  245 (299)
Q Consensus       203 ----~l~~~~~~ADIVIsa~g~p~~i~~~~vk---~gavVIDvg~~~~~~  245 (299)
                          ++.+.++++|+||++++ ++++++++++   ++.+|+|+. ||.++
T Consensus        86 ~~~~~l~~~l~~~dvlIgaT~-~G~~~~~~l~~m~~~~ivf~ls-nP~~e  133 (226)
T cd05311          86 KTGGTLKEALKGADVFIGVSR-PGVVKKEMIKKMAKDPIVFALA-NPVPE  133 (226)
T ss_pred             cccCCHHHHHhcCCEEEeCCC-CCCCCHHHHHhhCCCCEEEEeC-CCCCc
Confidence                23356677999999999 8889888887   899999988 87654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.78  E-value=3.8e-08  Score=94.51  Aligned_cols=94  Identities=24%  Similarity=0.231  Sum_probs=76.3

Q ss_pred             HHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhC-C-CeEEEEcCCCC---------------ChhhhccCCcEEE
Q 022295          153 GCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA-D-ATVTIVHSHTT---------------DPESIVREADIVI  215 (299)
Q Consensus       153 av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~-g-atVtv~~~~t~---------------~l~~~~~~ADIVI  215 (299)
                      ++..-.+..+.+++||+|+|+|++|.+|+.+++.|..+ | ..+++++++..               ++.+.+.++|+||
T Consensus       141 ~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv  220 (340)
T PRK14982        141 QVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVV  220 (340)
T ss_pred             HHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEE
Confidence            45555556778999999999999888899999999864 5 48999987521               2336788999999


Q ss_pred             EecCCCCc--CCCCccCCCeEEEEeeccCCCCC
Q 022295          216 AAAGQAMM--IKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       216 sa~g~p~~--i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      ++++.|+.  +++++++++.++||++.++.-++
T Consensus       221 ~~ts~~~~~~I~~~~l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        221 WVASMPKGVEIDPETLKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             ECCcCCcCCcCCHHHhCCCeEEEEecCCCCCCc
Confidence            99998764  79999999999999999987543

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.78  E-value=7e-08  Score=84.90  Aligned_cols=92  Identities=29%  Similarity=0.343  Sum_probs=69.7

Q ss_pred             HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------------Chhhh
Q 022295          154 CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------------DPESI  207 (299)
Q Consensus       154 v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------------~l~~~  207 (299)
                      +.+.|++++.++++++++|+|.++.+|+.++..|.+.|+.|+++.++..                          ++.+.
T Consensus        15 ~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   94 (194)
T cd01078          15 AGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAA   94 (194)
T ss_pred             HHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHH
Confidence            3444555678999999999997556799999999999999999876521                          12356


Q ss_pred             ccCCcEEEEecCCCC--cCCCC-ccCCCeEEEEeeccCCCC
Q 022295          208 VREADIVIAAAGQAM--MIKGS-WIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       208 ~~~ADIVIsa~g~p~--~i~~~-~vk~gavVIDvg~~~~~~  245 (299)
                      ++++|+||++++.+.  ....+ ..+++.+|+|+.+++..+
T Consensus        95 ~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~  135 (194)
T cd01078          95 IKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVG  135 (194)
T ss_pred             HhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCC
Confidence            788999999998766  33333 445689999999998644

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.70  E-value=3.4e-08  Score=97.46  Aligned_cols=94  Identities=27%  Similarity=0.338  Sum_probs=79.5

Q ss_pred             cCCHHHHHHHHHhh-CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcE
Q 022295          148 PCTPKGCLELLKRS-GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADI  213 (299)
Q Consensus       148 PcT~~av~~ll~~~-~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADI  213 (299)
                      -+|..+++.-+++. ++.+.|++|+|+|.|.+ |+.++..|...|++|+++++..             .++.+.++.||+
T Consensus       192 ~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~I-G~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDV  270 (425)
T PRK05476        192 YGTGESLLDGIKRATNVLIAGKVVVVAGYGDV-GKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDI  270 (425)
T ss_pred             HHHHhhhHHHHHHhccCCCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCE
Confidence            35788888877766 88899999999999885 9999999999999999997542             246677889999


Q ss_pred             EEEecCCCCcCCCCc---cCCCeEEEEeeccC
Q 022295          214 VIAAAGQAMMIKGSW---IKPGAAVIDVGTNA  242 (299)
Q Consensus       214 VIsa~g~p~~i~~~~---vk~gavVIDvg~~~  242 (299)
                      ||+++|.++.++.++   +|+|++++++|...
T Consensus       271 VI~aTG~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        271 FVTATGNKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence            999999999887544   59999999999754

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.65  E-value=9.3e-08  Score=91.70  Aligned_cols=94  Identities=15%  Similarity=0.119  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-----CChh----hhccCCcEEEEe---
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-----TDPE----SIVREADIVIAA---  217 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-----~~l~----~~~~~ADIVIsa---  217 (299)
                      +.++.++++.. -+++||+|+|||+|++ |+.++..|.++|+ .|++|+|+.     .++.    ++..++||||++   
T Consensus       159 ~s~av~~~~~~-~~l~~k~vLvIGaGem-~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~  236 (338)
T PRK00676        159 ESVVQQELRRR-QKSKKASLLFIGYSEI-NRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSE  236 (338)
T ss_pred             HHHHHHHHHHh-CCccCCEEEEEcccHH-HHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCc
Confidence            45567777665 5799999999999997 9999999999995 699999872     1222    456799999997   


Q ss_pred             cCCCCc-CCCCccCC--CeEEEEeeccCCCCC
Q 022295          218 AGQAMM-IKGSWIKP--GAAVIDVGTNAVDDS  246 (299)
Q Consensus       218 ~g~p~~-i~~~~vk~--gavVIDvg~~~~~~~  246 (299)
                      |++|+. ++.+++++  ..++||++.++.-++
T Consensus       237 Tas~~p~i~~~~~~~~~~r~~iDLAvPRdId~  268 (338)
T PRK00676        237 SAYAFPHLSWESLADIPDRIVFDFNVPRTFPW  268 (338)
T ss_pred             CCCCCceeeHHHHhhccCcEEEEecCCCCCcc
Confidence            678886 57667643  248999999987553

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.56  E-value=1.9e-07  Score=91.67  Aligned_cols=93  Identities=26%  Similarity=0.349  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHh-hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEE
Q 022295          149 CTPKGCLELLKR-SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIV  214 (299)
Q Consensus       149 cT~~av~~ll~~-~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIV  214 (299)
                      +|..++++-+.+ .++.+.||+|+|+|.|.+ |+.+++.|...|+.|+++++..             .++.+.++.+|+|
T Consensus       176 g~g~s~~~~i~r~t~~~l~Gk~VvViG~G~I-G~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVV  254 (406)
T TIGR00936       176 GTGQSTIDGILRATNLLIAGKTVVVAGYGWC-GKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIF  254 (406)
T ss_pred             ccchhHHHHHHHhcCCCCCcCEEEEECCCHH-HHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEE
Confidence            455666665544 588899999999999995 9999999999999999996442             2356778899999


Q ss_pred             EEecCCCCcCCC---CccCCCeEEEEeeccC
Q 022295          215 IAAAGQAMMIKG---SWIKPGAAVIDVGTNA  242 (299)
Q Consensus       215 Isa~g~p~~i~~---~~vk~gavVIDvg~~~  242 (299)
                      |+++|.+++++.   ..+|+|++++.+|...
T Consensus       255 ItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       255 ITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             EECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence            999999998876   4569999999999754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN00203 glutamyl-tRNA reductase

Probab=98.52  E-value=2.6e-07  Score=93.43  Aligned_cols=96  Identities=14%  Similarity=0.195  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHhhCC--CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC--------------------CChhh
Q 022295          150 TPKGCLELLKRSGV--TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT--------------------TDPES  206 (299)
Q Consensus       150 T~~av~~ll~~~~~--~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t--------------------~~l~~  206 (299)
                      .+.+.+++.+..--  ++.+++|+|||+|++ |+.++..|...|+ .|++++++.                    .++.+
T Consensus       247 v~s~Av~la~~~~~~~~l~~kkVlVIGAG~m-G~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~  325 (519)
T PLN00203        247 VSSAAVELALMKLPESSHASARVLVIGAGKM-GKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA  325 (519)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCEEEEEeCHHH-HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH
Confidence            35677788876643  499999999999886 9999999999997 699998751                    13446


Q ss_pred             hccCCcEEEEecCCCCc-CCCCccCC----------CeEEEEeeccCCCCC
Q 022295          207 IVREADIVIAAAGQAMM-IKGSWIKP----------GAAVIDVGTNAVDDS  246 (299)
Q Consensus       207 ~~~~ADIVIsa~g~p~~-i~~~~vk~----------gavVIDvg~~~~~~~  246 (299)
                      .+.+||+||++|++++. ++++|+++          ..++||++.++.-++
T Consensus       326 al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp  376 (519)
T PLN00203        326 CAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGA  376 (519)
T ss_pred             HHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcc
Confidence            78899999999998875 78888743          259999999986554

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.50  E-value=6.3e-07  Score=87.08  Aligned_cols=123  Identities=26%  Similarity=0.350  Sum_probs=85.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------------CChhhhccCCcEEEEecC---C
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------------TDPESIVREADIVIAAAG---Q  220 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g---~  220 (299)
                      +.+++|+|+|+|.+ |+.++..|...|+.|++++++.                     .++.+++++||+||++++   .
T Consensus       165 l~~~~VlViGaG~v-G~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       165 VEPGDVTIIGGGVV-GTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCceEEEEcCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            57789999999875 9999999999999999997641                     134567889999999984   3


Q ss_pred             --CCcCCCCcc---CCCeEEEEeeccCCCCCccCCCceeeccCCchhhhh---hhceeccCCCCccHHHHHHHHHHHHHH
Q 022295          221 --AMMIKGSWI---KPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK---VAGCVTPVPGGVGPMTVAMLLRNTLDG  292 (299)
Q Consensus       221 --p~~i~~~~v---k~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~---~a~~iTPVPGGVGp~T~a~L~~n~v~a  292 (299)
                        |.+++.+++   +++.++||+++.+-  ++.. ..+ .+..|++.+..   ..-.+.=.||-+ |.|.+.++.|.+..
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva~d~G--G~~e-~~~-~t~~d~p~~~~~Gv~~~~v~nlP~~~-p~~aS~~~~~~l~~  318 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVAIDQG--GCVE-TSR-PTTHDQPTYAVHDVVHYCVANMPGAV-PKTSTYALTNATMP  318 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEecCCC--CCcc-CCc-CCCCCCCEEEECCeEEEEeCCccccc-HHHHHHHHHHHHHH
Confidence              556777665   78999999998752  1100 001 22223222211   112344578888 99999888887754


Q ss_pred             H
Q 022295          293 A  293 (299)
Q Consensus       293 ~  293 (299)
                      +
T Consensus       319 ~  319 (370)
T TIGR00518       319 Y  319 (370)
T ss_pred             H
Confidence            4

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.48  E-value=3.2e-07  Score=90.54  Aligned_cols=95  Identities=21%  Similarity=0.308  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCC-----------------ChhhhccCCc
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTT-----------------DPESIVREAD  212 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~-----------------~l~~~~~~AD  212 (299)
                      +...+++.+....++.|++|+|+|+|.+ |+.++..|...|+ .|++++++..                 ++.+.+..+|
T Consensus       166 ~~~Av~~a~~~~~~~~~~~vlViGaG~i-G~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aD  244 (423)
T PRK00045        166 ASAAVELAKQIFGDLSGKKVLVIGAGEM-GELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEAD  244 (423)
T ss_pred             HHHHHHHHHHhhCCccCCEEEEECchHH-HHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCC
Confidence            3445566654434789999999999886 9999999999997 7999987521                 2335678899


Q ss_pred             EEEEecCCCCc-CCCCccCC--------CeEEEEeeccCCCCC
Q 022295          213 IVIAAAGQAMM-IKGSWIKP--------GAAVIDVGTNAVDDS  246 (299)
Q Consensus       213 IVIsa~g~p~~-i~~~~vk~--------gavVIDvg~~~~~~~  246 (299)
                      +||++||.|+. ++.+|+++        +.++||++.++.-++
T Consensus       245 vVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~  287 (423)
T PRK00045        245 IVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEP  287 (423)
T ss_pred             EEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence            99999998874 78888854        479999998775443

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.47  E-value=2.9e-07  Score=90.74  Aligned_cols=94  Identities=27%  Similarity=0.372  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCC-----------------ChhhhccCCc
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTT-----------------DPESIVREAD  212 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~-----------------~l~~~~~~AD  212 (299)
                      +.+.+++.++...++.|++|+|+|.|.+ |+.++..|...| ..|++++++..                 ++.+.+..+|
T Consensus       164 ~~~Av~la~~~~~~l~~~~VlViGaG~i-G~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aD  242 (417)
T TIGR01035       164 SSAAVELAERIFGSLKGKKALLIGAGEM-GELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEAD  242 (417)
T ss_pred             HHHHHHHHHHHhCCccCCEEEEECChHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCC
Confidence            4555666666655799999999999886 999999999999 68999987521                 2446678999


Q ss_pred             EEEEecCCCCc-CCCCccCC-------CeEEEEeeccCCCC
Q 022295          213 IVIAAAGQAMM-IKGSWIKP-------GAAVIDVGTNAVDD  245 (299)
Q Consensus       213 IVIsa~g~p~~-i~~~~vk~-------gavVIDvg~~~~~~  245 (299)
                      +||++||.|+. ++++|+++       ..+++|++.++.-+
T Consensus       243 vVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       243 IVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             EEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            99999998875 78888854       35999999877544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.45  E-value=4.2e-07  Score=87.05  Aligned_cols=86  Identities=26%  Similarity=0.378  Sum_probs=73.6

Q ss_pred             HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCC
Q 022295          154 CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       154 v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      +=-+++..++-+.||++||.|.|. |||.+|+.|...||.|.|.....             ..+.+..+.+||+||+||.
T Consensus       196 ~DgI~RaTn~liaGK~vVV~GYG~-vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TGn  274 (420)
T COG0499         196 LDGILRATNVLLAGKNVVVAGYGW-VGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATGN  274 (420)
T ss_pred             HHHHHhhhceeecCceEEEecccc-cchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccCC
Confidence            334445578999999999999999 59999999999999999987542             2356889999999999999


Q ss_pred             CCcCCCCcc---CCCeEEEEeec
Q 022295          221 AMMIKGSWI---KPGAAVIDVGT  240 (299)
Q Consensus       221 p~~i~~~~v---k~gavVIDvg~  240 (299)
                      -+.|+.+++   |+|+++.+.|.
T Consensus       275 kdVi~~eh~~~MkDgaIl~N~GH  297 (420)
T COG0499         275 KDVIRKEHFEKMKDGAILANAGH  297 (420)
T ss_pred             cCccCHHHHHhccCCeEEecccc
Confidence            999998885   88999999995

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.45  E-value=5e-07  Score=88.95  Aligned_cols=95  Identities=27%  Similarity=0.382  Sum_probs=76.0

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcE
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADI  213 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADI  213 (299)
                      +-|--..+-.+++..++.+.|++|+|+|.|.+ |+.+++.+...||+|+++....             .++.+.++.+|+
T Consensus       182 ~g~g~s~~~~i~r~t~~~l~GktVvViG~G~I-G~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDV  260 (413)
T cd00401         182 YGCRESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDI  260 (413)
T ss_pred             chhchhhHHHHHHhcCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCE
Confidence            44433345555666789999999999999985 9999999999999999986542             245577889999


Q ss_pred             EEEecCCCCcCCC---CccCCCeEEEEeeccC
Q 022295          214 VIAAAGQAMMIKG---SWIKPGAAVIDVGTNA  242 (299)
Q Consensus       214 VIsa~g~p~~i~~---~~vk~gavVIDvg~~~  242 (299)
                      ||.++|.++.+..   +.+++|++++.+|...
T Consensus       261 VI~atG~~~~i~~~~l~~mk~GgilvnvG~~~  292 (413)
T cd00401         261 FVTTTGNKDIITGEHFEQMKDGAIVCNIGHFD  292 (413)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            9999999987754   4579999999999653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=98.43  E-value=8.3e-07  Score=82.24  Aligned_cols=149  Identities=19%  Similarity=0.282  Sum_probs=96.9

Q ss_pred             CceEEEEeCCCCC-CC------CHHHHHccCCcccc----CCCCCccc--ccccccC---C-CC------CccccCCHHH
Q 022295           97 DVHGILVQLPLPK-HI------NEEKVLGEISLEKD----VDGFHPLN--IGKLAMK---G-RD------PLFLPCTPKG  153 (299)
Q Consensus        97 ~v~GIlvq~Plp~-~i------~~~~i~~~i~p~KD----VDg~~~~n--~g~l~~g---~-~~------~~~~PcT~~a  153 (299)
                      -+.|+++..||-+ .+      -.++++++..-.+|    |-|+.-..  .|++-.+   . .+      ...-.-|+.+
T Consensus        70 vieg~l~~~pllpe~~~s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVgn~~~n~q~~~~e~t~~~~ttgns~Taya  149 (351)
T COG5322          70 VIEGYLVESPLLPEMLRSRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVGNLGQNVQVRNVELTFTRFTTGNSHTAYA  149 (351)
T ss_pred             EEEEEEEccccCHHHHhhCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhhccccccccccceEEEEEecccCCccchHH
Confidence            4789999999832 21      23556666655443    33332111  2222110   0 00      0011235554


Q ss_pred             ----HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------Chh-hhc
Q 022295          154 ----CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------DPE-SIV  208 (299)
Q Consensus       154 ----v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~l~-~~~  208 (299)
                          +++-+++.|++++-.+|.|+|+.+.+|..+++.|..++....+.++...                    ++. +++
T Consensus       150 a~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~  229 (351)
T COG5322         150 ACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALP  229 (351)
T ss_pred             HHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeecccccc
Confidence                4555667899999999999999999999999999999988888875420                    122 344


Q ss_pred             cCCcEEEEecCCCCc-CCCCccCCCeEEEEeeccCCCC
Q 022295          209 READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       209 ~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~~~~~  245 (299)
                      ..+++|.+|+-.++. |.+.++|||++++|-|++..-+
T Consensus       230 ~e~i~v~vAs~~~g~~I~pq~lkpg~~ivD~g~P~dvd  267 (351)
T COG5322         230 QEDILVWVASMPKGVEIFPQHLKPGCLIVDGGYPKDVD  267 (351)
T ss_pred             ccceEEEEeecCCCceechhhccCCeEEEcCCcCcccc
Confidence            444555588777764 8999999999999999986533

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.41  E-value=2.7e-07  Score=87.00  Aligned_cols=77  Identities=27%  Similarity=0.485  Sum_probs=64.6

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------------------CCChhhhccCCcEEEEecC----
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------------------TTDPESIVREADIVIAAAG----  219 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------------------t~~l~~~~~~ADIVIsa~g----  219 (299)
                      ....+|+||| |++||.-.|++....||+||+.+.+                     ..++++.++.||+||.|+=    
T Consensus       166 V~~~kv~iiG-GGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         166 VLPAKVVVLG-GGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCccEEEEC-CccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            3557899999 5667999999999999999999754                     2367799999999998873    


Q ss_pred             -CCCcCCCCcc---CCCeEEEEeeccC
Q 022295          220 -QAMMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       220 -~p~~i~~~~v---k~gavVIDvg~~~  242 (299)
                       .|.+++.+|+   |||+++|||.++.
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVAiDq  271 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVAIDQ  271 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEEEcC
Confidence             4678998875   8999999999974

>PLN02494 adenosylhomocysteinase

Probab=98.38  E-value=7.8e-07  Score=88.62  Aligned_cols=91  Identities=26%  Similarity=0.331  Sum_probs=74.2

Q ss_pred             CCHHHHHHHHH-hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEE
Q 022295          149 CTPKGCLELLK-RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIV  214 (299)
Q Consensus       149 cT~~av~~ll~-~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIV  214 (299)
                      .|-+++++-+. ..++.+.||+|+|+|.|.+ |+.+|+.|...|+.|+++++..             .++.+.++.||+|
T Consensus       235 GtgqS~~d~i~r~t~i~LaGKtVvViGyG~I-Gr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVV  313 (477)
T PLN02494        235 GCRHSLPDGLMRATDVMIAGKVAVICGYGDV-GKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIF  313 (477)
T ss_pred             cccccHHHHHHHhcCCccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEE
Confidence            34555555554 4578899999999999985 9999999999999999986542             1356778999999


Q ss_pred             EEecCCCCcCCC---CccCCCeEEEEeec
Q 022295          215 IAAAGQAMMIKG---SWIKPGAAVIDVGT  240 (299)
Q Consensus       215 Isa~g~p~~i~~---~~vk~gavVIDvg~  240 (299)
                      |+++|.++++..   +.+|+|++++.+|.
T Consensus       314 I~tTGt~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        314 VTTTGNKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             EECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence            999999988744   45799999999998

>PLN02928 oxidoreductase family protein

Probab=98.34  E-value=5.3e-06  Score=80.03  Aligned_cols=134  Identities=24%  Similarity=0.305  Sum_probs=89.4

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------------CChhhhccCCcEEEE
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------------TDPESIVREADIVIA  216 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------------~~l~~~~~~ADIVIs  216 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.                         .++.+.+++||+|+.
T Consensus       154 ~~~l~gktvGIiG~G~I-G~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl  232 (347)
T PLN02928        154 GDTLFGKTVFILGYGAI-GIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVL  232 (347)
T ss_pred             ccCCCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEE
Confidence            35799999999999996 9999999999999999987541                         256788999999999


Q ss_pred             ecCC----CCcCCCCc---cCCCeEEEEeeccCCCCCc-----cCCCceeec---cCCchh--------hhhhhceeccC
Q 022295          217 AAGQ----AMMIKGSW---IKPGAAVIDVGTNAVDDST-----KKSGYRLVG---DVDFHE--------ACKVAGCVTPV  273 (299)
Q Consensus       217 a~g~----p~~i~~~~---vk~gavVIDvg~~~~~~~~-----~~~g~kl~G---Dvdf~~--------~~~~a~~iTPV  273 (299)
                      +++.    .++|+.+.   +|+|+++|++|.-.+-+..     -.+| ++.|   ||-..+        .....-.+||=
T Consensus       233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g-~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPH  311 (347)
T PLN02928        233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG-HLGGLAIDVAWSEPFDPDDPILKHPNVIITPH  311 (347)
T ss_pred             CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC-CeeEEEEccCCCCCCCCCChhhcCCCEEECCc
Confidence            8873    34787755   4899999999975442210     0012 4433   662111        11123367887


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHh
Q 022295          274 PGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       274 PGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      -||.-.-+..-+...+++..++|.
T Consensus       312 ia~~t~~~~~~~~~~~~~nl~~~~  335 (347)
T PLN02928        312 VAGVTEYSYRSMGKIVGDAALQLH  335 (347)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHH
Confidence            777655544444444444444443

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.31  E-value=1.1e-06  Score=76.80  Aligned_cols=83  Identities=23%  Similarity=0.357  Sum_probs=66.1

Q ss_pred             hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecC-CC---C
Q 022295          160 RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAG-QA---M  222 (299)
Q Consensus       160 ~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g-~p---~  222 (299)
                      ..+.++.||+|.|||.|.+ |+.+|.+|..-|++|..++++.             .++.+.+++||+|+...+ .|   +
T Consensus        29 ~~~~~l~g~tvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~  107 (178)
T PF02826_consen   29 FPGRELRGKTVGIIGYGRI-GRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRG  107 (178)
T ss_dssp             TTBS-STTSEEEEESTSHH-HHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTT
T ss_pred             CCccccCCCEEEEEEEcCC-cCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccce
Confidence            3467899999999999996 9999999999999999998763             367789999999998887 33   5


Q ss_pred             cCCCCc---cCCCeEEEEeeccCC
Q 022295          223 MIKGSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       223 ~i~~~~---vk~gavVIDvg~~~~  243 (299)
                      +|+.+.   +|+|+++|++|.-.+
T Consensus       108 li~~~~l~~mk~ga~lvN~aRG~~  131 (178)
T PF02826_consen  108 LINAEFLAKMKPGAVLVNVARGEL  131 (178)
T ss_dssp             SBSHHHHHTSTTTEEEEESSSGGG
T ss_pred             eeeeeeeeccccceEEEeccchhh
Confidence            787766   489999999997543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.26  E-value=2.7e-06  Score=80.65  Aligned_cols=94  Identities=20%  Similarity=0.305  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCC-----------------ChhhhccCCc
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTT-----------------DPESIVREAD  212 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~-----------------~l~~~~~~AD  212 (299)
                      +...+++.+..--++.|++|+|+|.|.+ |+.++..|...|+ .|++++++..                 ++.+.+.++|
T Consensus       162 ~~~Av~~a~~~~~~l~~~~V~ViGaG~i-G~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aD  240 (311)
T cd05213         162 SSAAVELAEKIFGNLKGKKVLVIGAGEM-GELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEAD  240 (311)
T ss_pred             HHHHHHHHHHHhCCccCCEEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCC
Confidence            4445666666545589999999999886 9999999988774 7999987521                 2446678899


Q ss_pred             EEEEecCCCCc---CCC---CccCCCeEEEEeeccCCCC
Q 022295          213 IVIAAAGQAMM---IKG---SWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       213 IVIsa~g~p~~---i~~---~~vk~gavVIDvg~~~~~~  245 (299)
                      +||++||.|+.   +..   .+-..+.++||++.++.-+
T Consensus       241 vVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         241 VVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             EEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence            99999998876   211   1223578999999876533

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.22  E-value=9.2e-06  Score=81.98  Aligned_cols=91  Identities=21%  Similarity=0.329  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhhCCC----------cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------C--
Q 022295          151 PKGCLELLKRSGVT----------IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------D--  203 (299)
Q Consensus       151 ~~av~~ll~~~~~~----------l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~--  203 (299)
                      .+|+++....++..          +.+.+|+|+|.|.+ |...+..+...|+.|+++..+..               +  
T Consensus       138 y~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~i-Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~  216 (511)
T TIGR00561       138 YRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFK  216 (511)
T ss_pred             HHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEecccc
Confidence            46677777766542          34689999998775 99999999999999999875410               0  


Q ss_pred             ------------------------hhhhccCCcEEEEec---C--CCCcCCCCcc---CCCeEEEEeeccC
Q 022295          204 ------------------------PESIVREADIVIAAA---G--QAMMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       204 ------------------------l~~~~~~ADIVIsa~---g--~p~~i~~~~v---k~gavVIDvg~~~  242 (299)
                                              +.+.++.+||||+++   |  .|.+++.+|+   |+|++++|+++.+
T Consensus       217 e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~  287 (511)
T TIGR00561       217 EEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ  287 (511)
T ss_pred             ccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence                                    345678999999999   5  4667898885   8999999999864

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.17  E-value=3e-05  Score=75.78  Aligned_cols=142  Identities=23%  Similarity=0.255  Sum_probs=93.6

Q ss_pred             HHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------CChhhhccCCcEEEEecCC-C---
Q 022295          155 LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------TDPESIVREADIVIAAAGQ-A---  221 (299)
Q Consensus       155 ~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------~~l~~~~~~ADIVIsa~g~-p---  221 (299)
                      +.+.++.+.++.||++.|||.|.+ |+.++..|...|++|..++...         .++.+.+++||+|+..++- +   
T Consensus       104 L~l~r~~g~~l~gktvGIIG~G~I-G~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~  182 (381)
T PRK00257        104 LTLAEREGVDLAERTYGVVGAGHV-GGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGE  182 (381)
T ss_pred             HHHhcccCCCcCcCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCcc
Confidence            344456788999999999999985 9999999999999999987421         2577889999999988872 3   


Q ss_pred             ----CcCCCCc---cCCCeEEEEeeccCCCCCcc-----CCC--ceeeccCCc------hhhhhhhceeccCCCCccHHH
Q 022295          222 ----MMIKGSW---IKPGAAVIDVGTNAVDDSTK-----KSG--YRLVGDVDF------HEACKVAGCVTPVPGGVGPMT  281 (299)
Q Consensus       222 ----~~i~~~~---vk~gavVIDvg~~~~~~~~~-----~~g--~kl~GDvdf------~~~~~~a~~iTPVPGGVGp~T  281 (299)
                          ++++.+.   +|+|+++|+++.-.+-+...     .+|  ...+=||=.      .......-.+||=-+|...=+
T Consensus       183 ~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~  262 (381)
T PRK00257        183 HPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDG  262 (381)
T ss_pred             ccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHH
Confidence                4676644   59999999999765533100     001  023446621      112223456888777765544


Q ss_pred             HHHHHHHHHHHHHHHh
Q 022295          282 VAMLLRNTLDGAKRVI  297 (299)
Q Consensus       282 ~a~L~~n~v~a~~~~~  297 (299)
                      ..-....++++..+++
T Consensus       263 ~~r~~~~~~~nl~~~~  278 (381)
T PRK00257        263 KARGTAQIYQALCRFF  278 (381)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444443

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.14  E-value=3.6e-05  Score=75.14  Aligned_cols=89  Identities=24%  Similarity=0.340  Sum_probs=70.8

Q ss_pred             HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------CCChhhhccCCcEEEEecC-CC--
Q 022295          154 CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------TTDPESIVREADIVIAAAG-QA--  221 (299)
Q Consensus       154 v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------t~~l~~~~~~ADIVIsa~g-~p--  221 (299)
                      ++.+.++.+.++.||++.|||.|.+ |+.+|..|...|++|..++..         ..++.+.+++||||+..++ .+  
T Consensus       103 lL~l~r~~g~~L~gktvGIIG~G~I-G~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g  181 (378)
T PRK15438        103 LLMLAERDGFSLHDRTVGIVGVGNV-GRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDG  181 (378)
T ss_pred             HHHHhccCCCCcCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCc
Confidence            3444456788999999999999986 999999999999999999742         1257889999999997766 12  


Q ss_pred             -----CcCCCCc---cCCCeEEEEeeccCC
Q 022295          222 -----MMIKGSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       222 -----~~i~~~~---vk~gavVIDvg~~~~  243 (299)
                           ++++.+.   +|+|+++|++|.-.+
T Consensus       182 ~~~T~~li~~~~l~~mk~gailIN~aRG~v  211 (378)
T PRK15438        182 PYKTLHLADEKLIRSLKPGAILINACRGAV  211 (378)
T ss_pred             ccccccccCHHHHhcCCCCcEEEECCCchh
Confidence                 3566544   589999999997654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.11  E-value=9.1e-06  Score=72.49  Aligned_cols=95  Identities=23%  Similarity=0.290  Sum_probs=68.1

Q ss_pred             cCCHHHHHHHHHhh------CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh--------------hhh
Q 022295          148 PCTPKGCLELLKRS------GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP--------------ESI  207 (299)
Q Consensus       148 PcT~~av~~ll~~~------~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l--------------~~~  207 (299)
                      |.|++|+...+++.      +.+++||+++|+|.|+ +|+.+++.|.+.|++|++++++...+              .+.
T Consensus         3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~-vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l   81 (200)
T cd01075           3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGK-VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEI   81 (200)
T ss_pred             ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhh
Confidence            67888886665543      7899999999999987 59999999999999999987653211              122


Q ss_pred             c-cCCcEEEEecCCCCcCCCCccCC--CeEEEEeeccCCC
Q 022295          208 V-READIVIAAAGQAMMIKGSWIKP--GAAVIDVGTNAVD  244 (299)
Q Consensus       208 ~-~~ADIVIsa~g~p~~i~~~~vk~--gavVIDvg~~~~~  244 (299)
                      . .++|+++.++.. +.++.+.++.  ..+|++-+-++..
T Consensus        82 ~~~~~Dv~vp~A~~-~~I~~~~~~~l~~~~v~~~AN~~~~  120 (200)
T cd01075          82 YSVDADVFAPCALG-GVINDDTIPQLKAKAIAGAANNQLA  120 (200)
T ss_pred             ccccCCEEEecccc-cccCHHHHHHcCCCEEEECCcCccC
Confidence            2 379999955442 3566555432  4577887766553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.05  E-value=2.2e-05  Score=74.99  Aligned_cols=75  Identities=20%  Similarity=0.388  Sum_probs=62.3

Q ss_pred             CCcEEEEEcCCccchHHHHHHHh-hCC-CeEEEEcCCC---------------------CChhhhccCCcEEEEecCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLL-KAD-ATVTIVHSHT---------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~-~~g-atVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      ..++++|||.|+. |+..+..|. .++ .+|++++++.                     .++++.+++|||||++|+.+.
T Consensus       128 ~~~~v~iiGaG~q-A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~  206 (326)
T TIGR02992       128 DSSVVAIFGAGMQ-ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET  206 (326)
T ss_pred             CCcEEEEECCCHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC
Confidence            5689999999997 999998886 466 4799998751                     345677899999999999765


Q ss_pred             -cCCCCccCCCeEEEEeecc
Q 022295          223 -MIKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       223 -~i~~~~vk~gavVIDvg~~  241 (299)
                       +++.+|+++|+.|..+|.+
T Consensus       207 p~i~~~~l~~g~~i~~vg~~  226 (326)
T TIGR02992       207 PILHAEWLEPGQHVTAMGSD  226 (326)
T ss_pred             cEecHHHcCCCcEEEeeCCC
Confidence             5799999999999999965

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.03  E-value=1.2e-05  Score=77.06  Aligned_cols=81  Identities=22%  Similarity=0.292  Sum_probs=66.6

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCC-C---CcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQ-A---MMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~-p---~~i~  225 (299)
                      +.+|.||++.|||.|.+ |+.+|..|...|++|..+++..            .++.+.+++||+|+.+++. +   +++.
T Consensus       145 g~~L~gktvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~  223 (333)
T PRK13243        145 GYDVYGKTIGIIGFGRI-GQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMIN  223 (333)
T ss_pred             ccCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccC
Confidence            35789999999999886 9999999999999999887542            2567889999999999884 2   3676


Q ss_pred             C---CccCCCeEEEEeeccCC
Q 022295          226 G---SWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       226 ~---~~vk~gavVIDvg~~~~  243 (299)
                      .   +.+|+|+++||++.-..
T Consensus       224 ~~~~~~mk~ga~lIN~aRg~~  244 (333)
T PRK13243        224 EERLKLMKPTAILVNTARGKV  244 (333)
T ss_pred             HHHHhcCCCCeEEEECcCchh
Confidence            5   44689999999997654

>PRK06436 glycerate dehydrogenase; Provisional

Probab=97.97  E-value=1.9e-05  Score=74.92  Aligned_cols=80  Identities=24%  Similarity=0.342  Sum_probs=66.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------CCChhhhccCCcEEEEecCC-C---CcCCCC--
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------TTDPESIVREADIVIAAAGQ-A---MMIKGS--  227 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------t~~l~~~~~~ADIVIsa~g~-p---~~i~~~--  227 (299)
                      ..|.||++.|||.|.+ |+++|.+|...|++|..++++         ..++.+.+++||+|+...+. |   +++..+  
T Consensus       118 ~~L~gktvgIiG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l  196 (303)
T PRK06436        118 KLLYNKSLGILGYGGI-GRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKML  196 (303)
T ss_pred             CCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHH
Confidence            4789999999999986 999999999889999998864         13678889999999998883 2   366653  


Q ss_pred             -ccCCCeEEEEeeccCC
Q 022295          228 -WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       228 -~vk~gavVIDvg~~~~  243 (299)
                       .+|+|+++|++|.-..
T Consensus       197 ~~mk~ga~lIN~sRG~~  213 (303)
T PRK06436        197 SLFRKGLAIINVARADV  213 (303)
T ss_pred             hcCCCCeEEEECCCccc
Confidence             4689999999998654

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.96  E-value=1.6e-05  Score=75.67  Aligned_cols=80  Identities=24%  Similarity=0.345  Sum_probs=65.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------CChhhhccCCcEEEEecC-CC---CcCCCCc--
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------TDPESIVREADIVIAAAG-QA---MMIKGSW--  228 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------~~l~~~~~~ADIVIsa~g-~p---~~i~~~~--  228 (299)
                      .++.||++.|||.|.+ |+.+|.+|..-|++|...++..        .++.+.+++||+|+...+ .|   ++|+.+.  
T Consensus       143 ~~l~gktvgIiG~G~I-G~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~  221 (314)
T PRK06932        143 TDVRGSTLGVFGKGCL-GTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLA  221 (314)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH
Confidence            4689999999999996 9999999999999998776431        257899999999998887 33   4787755  


Q ss_pred             -cCCCeEEEEeeccCC
Q 022295          229 -IKPGAAVIDVGTNAV  243 (299)
Q Consensus       229 -vk~gavVIDvg~~~~  243 (299)
                       +|||+++|++|.-.+
T Consensus       222 ~mk~ga~lIN~aRG~~  237 (314)
T PRK06932        222 LMKPTAFLINTGRGPL  237 (314)
T ss_pred             hCCCCeEEEECCCccc
Confidence             599999999997654

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=97.94  E-value=1.9e-05  Score=74.54  Aligned_cols=98  Identities=28%  Similarity=0.341  Sum_probs=77.0

Q ss_pred             CccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccC
Q 022295          144 PLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVRE  210 (299)
Q Consensus       144 ~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~  210 (299)
                      +.++-|--.-+--+-+...+-+.||.+||.|.|. |||..|..|...|+.|+|.....             ..+.+.+++
T Consensus       191 DnLygcreSl~DgikraTDvM~aGKv~Vv~GYGd-VGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e  269 (434)
T KOG1370|consen  191 DNLYGCRESLLDGIKRATDVMIAGKVAVVCGYGD-VGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIRE  269 (434)
T ss_pred             cccccchhhhhhhhhhhhhheecccEEEEeccCc-cchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhc
Confidence            3455554222222233456778999999999999 59999999999999999987542             246799999


Q ss_pred             CcEEEEecCCCCcCCCCcc---CCCeEEEEeeccC
Q 022295          211 ADIVIAAAGQAMMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       211 ADIVIsa~g~p~~i~~~~v---k~gavVIDvg~~~  242 (299)
                      +||+||+||.-+.|..+++   |.+++|.++|+.-
T Consensus       270 ~difVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd  304 (434)
T KOG1370|consen  270 VDIFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFD  304 (434)
T ss_pred             CCEEEEccCCcchhhHHHHHhCcCCcEEecccccc
Confidence            9999999999999988775   7799999999753

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.93  E-value=2.1e-05  Score=74.97  Aligned_cols=80  Identities=20%  Similarity=0.271  Sum_probs=66.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------CChhhhccCCcEEEEecCC----CCcCCCCc---
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------TDPESIVREADIVIAAAGQ----AMMIKGSW---  228 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------~~l~~~~~~ADIVIsa~g~----p~~i~~~~---  228 (299)
                      .++.||++.|||.|.+ |+.+|.+|..-|+.|...++..       .++.+.+++||+|+...+.    -++|+.+.   
T Consensus       144 ~~l~gktvgIiG~G~I-G~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~  222 (317)
T PRK06487        144 VELEGKTLGLLGHGEL-GGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELAL  222 (317)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhc
Confidence            3689999999999996 9999999999999998776431       2578999999999988873    34787755   


Q ss_pred             cCCCeEEEEeeccCC
Q 022295          229 IKPGAAVIDVGTNAV  243 (299)
Q Consensus       229 vk~gavVIDvg~~~~  243 (299)
                      +|+|+++|++|.-.+
T Consensus       223 mk~ga~lIN~aRG~v  237 (317)
T PRK06487        223 MKPGALLINTARGGL  237 (317)
T ss_pred             CCCCeEEEECCCccc
Confidence            599999999997654

>PRK07574 formate dehydrogenase; Provisional

Probab=97.92  E-value=2.1e-05  Score=77.00  Aligned_cols=133  Identities=21%  Similarity=0.244  Sum_probs=87.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCC-C---CcC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQ-A---MMI  224 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~-p---~~i  224 (299)
                      .++.||+|.|||.|.+ |+.+|..|...|++|..++++.              .++.+.+++||+|+...+. |   +++
T Consensus       188 ~~L~gktVGIvG~G~I-G~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li  266 (385)
T PRK07574        188 YDLEGMTVGIVGAGRI-GLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF  266 (385)
T ss_pred             eecCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh
Confidence            4689999999999996 9999999999999999887642              3567889999999998883 3   357


Q ss_pred             CCCc---cCCCeEEEEeeccCCCCCc-----cCCC--ceeeccCCchh--------hhhhhceeccCCCCccHHHHHHHH
Q 022295          225 KGSW---IKPGAAVIDVGTNAVDDST-----KKSG--YRLVGDVDFHE--------ACKVAGCVTPVPGGVGPMTVAMLL  286 (299)
Q Consensus       225 ~~~~---vk~gavVIDvg~~~~~~~~-----~~~g--~kl~GDvdf~~--------~~~~a~~iTPVPGGVGp~T~a~L~  286 (299)
                      +.+.   +|+|+++|+++.-..-+..     -.+|  .....||=+.+        ..--.-.+||=-+|.-.=+..-+.
T Consensus       267 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~  346 (385)
T PRK07574        267 DADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYA  346 (385)
T ss_pred             CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHH
Confidence            6644   5999999999976542210     0001  02456873321        111133678877776544444444


Q ss_pred             HHHHHHHHHH
Q 022295          287 RNTLDGAKRV  296 (299)
Q Consensus       287 ~n~v~a~~~~  296 (299)
                      ..+++..+++
T Consensus       347 ~~~~~ni~~~  356 (385)
T PRK07574        347 AGTREILECF  356 (385)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.92  E-value=2.7e-05  Score=74.06  Aligned_cols=80  Identities=26%  Similarity=0.351  Sum_probs=66.8

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------CChhhhccCCcEEEEecC-CC---CcCCCCc-
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------TDPESIVREADIVIAAAG-QA---MMIKGSW-  228 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------~~l~~~~~~ADIVIsa~g-~p---~~i~~~~-  228 (299)
                      .+|.||++.|||.|.+ |+.+|.+|..-|++|..+++..         .++.+.+++||+|+..++ .|   ++|+.+. 
T Consensus       141 ~~L~gktvGIiG~G~I-G~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~  219 (311)
T PRK08410        141 GEIKGKKWGIIGLGTI-GKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKEL  219 (311)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHH
Confidence            4689999999999996 9999999999999999887532         257889999999998887 33   4787755 


Q ss_pred             --cCCCeEEEEeeccCC
Q 022295          229 --IKPGAAVIDVGTNAV  243 (299)
Q Consensus       229 --vk~gavVIDvg~~~~  243 (299)
                        +|||+++|++|.-.+
T Consensus       220 ~~Mk~~a~lIN~aRG~v  236 (311)
T PRK08410        220 KLLKDGAILINVGRGGI  236 (311)
T ss_pred             HhCCCCeEEEECCCccc
Confidence              599999999997655

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.91  E-value=2.1e-05  Score=75.45  Aligned_cols=80  Identities=19%  Similarity=0.326  Sum_probs=65.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------CChhhhccCCcEEEEecCCC----CcCCCC-
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------TDPESIVREADIVIAAAGQA----MMIKGS-  227 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------~~l~~~~~~ADIVIsa~g~p----~~i~~~-  227 (299)
                      ..|.|+++.|||.|.+ |+++|..|...|++|+.++++.          .++.+.+++||+|+.+++..    +++..+ 
T Consensus       142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~  220 (330)
T PRK12480        142 KPVKNMTVAIIGTGRI-GAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAM  220 (330)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHH
Confidence            4689999999999886 9999999999999999987542          36788999999999999853    345443 


Q ss_pred             --ccCCCeEEEEeeccCC
Q 022295          228 --WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       228 --~vk~gavVIDvg~~~~  243 (299)
                        .+++|+++|++|.-.+
T Consensus       221 l~~mk~gavlIN~aRG~~  238 (330)
T PRK12480        221 FDHVKKGAILVNAARGAV  238 (330)
T ss_pred             HhcCCCCcEEEEcCCccc
Confidence              3589999999997654

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.91  E-value=1.9e-05  Score=70.64  Aligned_cols=112  Identities=25%  Similarity=0.303  Sum_probs=73.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-CCh-----------------hhhccCCcEEEEecCCCCc-
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-TDP-----------------ESIVREADIVIAAAGQAMM-  223 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-~~l-----------------~~~~~~ADIVIsa~g~p~~-  223 (299)
                      ++++||+|+|||.|. ||.-.+..|+..|+.|+++...- +.+                 .+.+..+|+||+||+.+.+ 
T Consensus         6 l~l~~k~vLVIGgG~-va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN   84 (202)
T PRK06718          6 IDLSNKRVVIVGGGK-VAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN   84 (202)
T ss_pred             EEcCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH
Confidence            578999999999877 59999999999999999996432 111                 2457889999999998864 


Q ss_pred             --CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhh---hceeccCCCCccHHHHHHHHHHHH
Q 022295          224 --IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV---AGCVTPVPGGVGPMTVAMLLRNTL  290 (299)
Q Consensus       224 --i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~---a~~iTPVPGGVGp~T~a~L~~n~v  290 (299)
                        |.... +.+.. +.+.-++.          . ||+-|.++-+.   .-+||  -||-+|..+..|=+++-
T Consensus        85 ~~i~~~a-~~~~l-vn~~d~~~----------~-~~f~~Pa~~~~g~l~iaIs--T~G~sP~la~~lr~~ie  141 (202)
T PRK06718         85 EQVKEDL-PENAL-FNVITDAE----------S-GNVVFPSALHRGKLTISVS--TDGASPKLAKKIRDELE  141 (202)
T ss_pred             HHHHHHH-HhCCc-EEECCCCc----------c-CeEEEeeEEEcCCeEEEEE--CCCCChHHHHHHHHHHH
Confidence              43333 44543 34432321          2 34445543332   22333  47889988776655444

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.90  E-value=2.5e-05  Score=74.40  Aligned_cols=80  Identities=10%  Similarity=0.120  Sum_probs=65.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCC-C---CcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQ-A---MMIKG  226 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~-p---~~i~~  226 (299)
                      ..+.||++.|||.|.+ |+.+|..|...|+.|+.++++.            .++.+.+++||+|+...+. |   +++..
T Consensus       132 ~~l~g~tvgIvG~G~I-G~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~  210 (312)
T PRK15469        132 YHREDFTIGILGAGVL-GSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQ  210 (312)
T ss_pred             CCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHH
Confidence            4689999999999986 9999999999999998876432            2467889999999998883 3   25655


Q ss_pred             C---ccCCCeEEEEeeccCC
Q 022295          227 S---WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       227 ~---~vk~gavVIDvg~~~~  243 (299)
                      +   .+|+|+++|++|--.+
T Consensus       211 ~~l~~mk~ga~lIN~aRG~v  230 (312)
T PRK15469        211 QLLEQLPDGAYLLNLARGVH  230 (312)
T ss_pred             HHHhcCCCCcEEEECCCccc
Confidence            3   4689999999997654

>PRK12862 malic enzyme; Reviewed

Probab=97.90  E-value=5.7e-05  Score=79.70  Aligned_cols=172  Identities=19%  Similarity=0.222  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHcC-CceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcc
Q 022295           54 QSYVSMKRKACAEVG-IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPL  132 (299)
Q Consensus        54 ~~Y~~~k~k~~~~~G-i~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~  132 (299)
                      .-=...|.-.++.+| |++..+++... +.+|+.+.++.+-  |++-||++.-=  +.-+--++++.....-|+.-||. 
T Consensus        94 ~pv~egK~~l~~~~~gi~~~~i~~~~~-d~d~~v~~v~~~~--p~f~~i~~ED~--~~~~~f~i~~~~~~~~~ip~f~D-  167 (763)
T PRK12862         94 KPVMEGKAVLFKKFAGIDVFDIELDES-DPDKLVEIVAALE--PTFGGINLEDI--KAPECFYIERELRERMKIPVFHD-  167 (763)
T ss_pred             cchHHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCcceeeeecc--cCchHHHHHHHHHhcCCCceEec-
Confidence            344556777777764 88777777643 7789999999987  77888776321  11122445555554445665553 


Q ss_pred             cccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCC---------
Q 022295          133 NIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSH---------  200 (299)
Q Consensus       133 n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~---------  200 (299)
                               +..+---.+..|++..++-.|.+++..++++.|+|.+ |..++.+|...|.   .+++|+++         
T Consensus       168 ---------D~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~  237 (763)
T PRK12862        168 ---------DQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA-ALACLDLLVSLGVKRENIWVTDIKGVVYEGRTE  237 (763)
T ss_pred             ---------CcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH-HHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCc
Confidence                     2344445567889999999999999999999999998 9999999999997   68999854         


Q ss_pred             --------------CCChhhhccCCcEEEEecCCCCcCCCCccCC---CeEEEEeeccCC
Q 022295          201 --------------TTDPESIVREADIVIAAAGQAMMIKGSWIKP---GAAVIDVGTNAV  243 (299)
Q Consensus       201 --------------t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~---gavVIDvg~~~~  243 (299)
                                    ..+|.+.++.+|++|...+ |+.++++|++.   .-+|+=++ ||.
T Consensus       238 ~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~  295 (763)
T PRK12862        238 LMDPWKARYAQKTDARTLAEVIEGADVFLGLSA-AGVLKPEMVKKMAPRPLIFALA-NPT  295 (763)
T ss_pred             cccHHHHHHhhhcccCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEeCC-CCc
Confidence                          1357899999999998887 89999999854   67777766 443

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.88  E-value=3.9e-05  Score=73.52  Aligned_cols=81  Identities=22%  Similarity=0.335  Sum_probs=64.7

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHH-hhCCCeEEEEcCCC-----------CChhhhccCCcEEEEecCCC----CcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLL-LKADATVTIVHSHT-----------TDPESIVREADIVIAAAGQA----MMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL-~~~gatVtv~~~~t-----------~~l~~~~~~ADIVIsa~g~p----~~i~  225 (299)
                      +.+|.|++|.|||.|.+ |+.+|..| ...|++|+..+++.           .++.+.+++||+|+.+++..    +++.
T Consensus       141 ~~~l~g~~VgIIG~G~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~  219 (332)
T PRK08605        141 SRSIKDLKVAVIGTGRI-GLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFN  219 (332)
T ss_pred             cceeCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcC
Confidence            34689999999999886 99999999 55688998887532           36888999999999998743    3555


Q ss_pred             C---CccCCCeEEEEeeccCC
Q 022295          226 G---SWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       226 ~---~~vk~gavVIDvg~~~~  243 (299)
                      .   +++++|+++||++.-..
T Consensus       220 ~~~l~~mk~gailIN~sRG~~  240 (332)
T PRK08605        220 ADLFKHFKKGAVFVNCARGSL  240 (332)
T ss_pred             HHHHhcCCCCcEEEECCCCcc
Confidence            4   45799999999997544

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.88  E-value=1.1e-05  Score=69.81  Aligned_cols=77  Identities=21%  Similarity=0.373  Sum_probs=56.9

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------C------------------------CCh
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------T------------------------TDP  204 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------t------------------------~~l  204 (299)
                      +...+|+|+|.|. ||+.++.+|...|+.|++.+..                +                        ..+
T Consensus        18 ~~p~~vvv~G~G~-vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   96 (168)
T PF01262_consen   18 VPPAKVVVTGAGR-VGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF   96 (168)
T ss_dssp             E-T-EEEEESTSH-HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred             CCCeEEEEECCCH-HHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence            4568999999776 5999999999999999999743                1                        135


Q ss_pred             hhhccCCcEEEEecC-----CCCcCCCCcc---CCCeEEEEeeccC
Q 022295          205 ESIVREADIVIAAAG-----QAMMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       205 ~~~~~~ADIVIsa~g-----~p~~i~~~~v---k~gavVIDvg~~~  242 (299)
                      .+.++.+|+||++.-     .|.+|+.+++   ++|++|+|+.++.
T Consensus        97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~  142 (168)
T PF01262_consen   97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ  142 (168)
T ss_dssp             HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred             HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence            578899999996542     4678988885   7899999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=97.85  E-value=7e-05  Score=78.76  Aligned_cols=173  Identities=19%  Similarity=0.243  Sum_probs=127.2

Q ss_pred             cHHHHHHHHHHHHHcC-CceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCc
Q 022295           53 SQSYVSMKRKACAEVG-IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHP  131 (299)
Q Consensus        53 s~~Y~~~k~k~~~~~G-i~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~  131 (299)
                      +.-=...|.-.++.+| |++..+.+... +.+|+.+.++.+-  |++-||++.-=  +.-+--++++.+..+-|+.-||.
T Consensus        85 ~~pv~egK~~l~~~~~gid~~~i~~~~~-d~de~v~~v~~~~--p~~g~i~~ED~--~~p~~f~i~~~~~~~~~ip~f~D  159 (752)
T PRK07232         85 SKPVMEGKGVLFKKFAGIDVFDIEVDEE-DPDKFIEAVAALE--PTFGGINLEDI--KAPECFYIEEKLRERMDIPVFHD  159 (752)
T ss_pred             CccHHHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCccEEeeeec--CCchHHHHHHHHHHhcCCCeecc
Confidence            3444567777777765 88777777533 6789999998887  77888886421  11122445555544446666653


Q ss_pred             ccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCC--------
Q 022295          132 LNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSH--------  200 (299)
Q Consensus       132 ~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~--------  200 (299)
                                +..+---.+..|++..|+-.+.+++..++++.|+|.+ |-.++.+|...|.   .+++|+++        
T Consensus       160 ----------D~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~  228 (752)
T PRK07232        160 ----------DQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAA-AIACLNLLVALGAKKENIIVCDSKGVIYKGRT  228 (752)
T ss_pred             ----------ccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHH-HHHHHHHHHHcCCCcccEEEEcCCCeecCCCc
Confidence                      2333344567889999999999999999999999998 9999999999997   68999754        


Q ss_pred             ---------------CCChhhhccCCcEEEEecCCCCcCCCCccCC---CeEEEEeeccCC
Q 022295          201 ---------------TTDPESIVREADIVIAAAGQAMMIKGSWIKP---GAAVIDVGTNAV  243 (299)
Q Consensus       201 ---------------t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~---gavVIDvg~~~~  243 (299)
                                     ..+|.+.++.+|++|...+ |+.++++|++.   ..+|+=+. ||.
T Consensus       229 ~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~  287 (752)
T PRK07232        229 EGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSA-AGVLTPEMVKSMADNPIIFALA-NPD  287 (752)
T ss_pred             ccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEecC-CCC
Confidence                           1357899999999998777 89999999854   67777776 444

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.83  E-value=9.2e-05  Score=70.65  Aligned_cols=74  Identities=18%  Similarity=0.250  Sum_probs=59.9

Q ss_pred             CCcEEEEEcCCccchHHHHHHHh-hCCC-eEEEEcCCC---------------------CChhhhccCCcEEEEecCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLL-KADA-TVTIVHSHT---------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~-~~ga-tVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      ..++++|||.|+. |+..+..++ .+++ +|++++++.                     .++++.+++||+||++|++++
T Consensus       126 ~~~~v~iiGaG~~-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~  204 (325)
T PRK08618        126 DAKTLCLIGTGGQ-AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT  204 (325)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC
Confidence            5789999999997 988776664 4554 788887641                     345678899999999999877


Q ss_pred             c-CCCCccCCCeEEEEeecc
Q 022295          223 M-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       223 ~-i~~~~vk~gavVIDvg~~  241 (299)
                      . ++ +|+++|+.|+-+|.+
T Consensus       205 p~i~-~~l~~G~hV~~iGs~  223 (325)
T PRK08618        205 PVFS-EKLKKGVHINAVGSF  223 (325)
T ss_pred             cchH-HhcCCCcEEEecCCC
Confidence            5 78 999999999999975

>PLN02306 hydroxypyruvate reductase

Probab=97.81  E-value=4.2e-05  Score=74.88  Aligned_cols=81  Identities=20%  Similarity=0.312  Sum_probs=64.9

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHh-hCCCeEEEEcCC----------------------------CCChhhhccCCc
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLL-KADATVTIVHSH----------------------------TTDPESIVREAD  212 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~-~~gatVtv~~~~----------------------------t~~l~~~~~~AD  212 (299)
                      +.++.||++.|||.|.+ |+.+|.+|. .-|++|...+++                            ..++.+.+++||
T Consensus       160 g~~L~gktvGIiG~G~I-G~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sD  238 (386)
T PLN02306        160 GNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREAD  238 (386)
T ss_pred             CcCCCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCC
Confidence            35689999999999996 999999985 789999877532                            136788999999


Q ss_pred             EEEEecCC----CCcCCCCc---cCCCeEEEEeeccCC
Q 022295          213 IVIAAAGQ----AMMIKGSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       213 IVIsa~g~----p~~i~~~~---vk~gavVIDvg~~~~  243 (299)
                      +|+..++.    .++|+.+.   +|+|+++|++|.-.+
T Consensus       239 iV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~l  276 (386)
T PLN02306        239 VISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPV  276 (386)
T ss_pred             EEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccc
Confidence            99987762    34787755   599999999997544

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.81  E-value=4.8e-05  Score=72.74  Aligned_cols=81  Identities=19%  Similarity=0.290  Sum_probs=65.9

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHh-hCCCeEEEEcCCC------------CChhhhccCCcEEEEecC-CC---CcC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLL-KADATVTIVHSHT------------TDPESIVREADIVIAAAG-QA---MMI  224 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~-~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g-~p---~~i  224 (299)
                      +.+|.||++.|||.|.+ |+.+|..|. .-|++|...++..            .++.+.+++||+|+..++ .|   ++|
T Consensus       140 g~~L~gktvGIiG~G~I-G~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li  218 (323)
T PRK15409        140 GTDVHHKTLGIVGMGRI-GMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLF  218 (323)
T ss_pred             cCCCCCCEEEEEcccHH-HHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhcc
Confidence            45799999999999996 999999997 7899988776442            256789999999998887 33   478


Q ss_pred             CCCc---cCCCeEEEEeeccCC
Q 022295          225 KGSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       225 ~~~~---vk~gavVIDvg~~~~  243 (299)
                      ..+.   +|||+++|+++.-.+
T Consensus       219 ~~~~l~~mk~ga~lIN~aRG~v  240 (323)
T PRK15409        219 GAEQFAKMKSSAIFINAGRGPV  240 (323)
T ss_pred             CHHHHhcCCCCeEEEECCCccc
Confidence            7655   589999999997654

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.80  E-value=0.00011  Score=70.40  Aligned_cols=88  Identities=20%  Similarity=0.329  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhh-CC-CeEEEEcCC---------------------CCChhhh
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK-AD-ATVTIVHSH---------------------TTDPESI  207 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~-~g-atVtv~~~~---------------------t~~l~~~  207 (299)
                      +.+++......  ....++++|||+|+. |+..+..|.. ++ ..|++++++                     ..++++.
T Consensus       118 a~~~~a~~~la--~~~~~~v~IiGaG~~-a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~a  194 (330)
T PRK08291        118 AAGAVAARHLA--REDASRAAVIGAGEQ-ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEA  194 (330)
T ss_pred             HHHHHHHHHhC--CCCCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHH
Confidence            45565555321  335689999999997 9988777764 55 479999865                     1355678


Q ss_pred             ccCCcEEEEecCCCC-cCCCCccCCCeEEEEeecc
Q 022295          208 VREADIVIAAAGQAM-MIKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       208 ~~~ADIVIsa~g~p~-~i~~~~vk~gavVIDvg~~  241 (299)
                      +++|||||+||+... +++.+|+++|+.|..+|.+
T Consensus       195 l~~aDiVi~aT~s~~p~i~~~~l~~g~~v~~vg~d  229 (330)
T PRK08291        195 VAGADIIVTTTPSEEPILKAEWLHPGLHVTAMGSD  229 (330)
T ss_pred             HccCCEEEEeeCCCCcEecHHHcCCCceEEeeCCC
Confidence            899999999999765 5899999999999999875

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.80  E-value=4.5e-05  Score=73.03  Aligned_cols=82  Identities=24%  Similarity=0.330  Sum_probs=68.8

Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCC-C---Cc
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQ-A---MM  223 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~-p---~~  223 (299)
                      .+.+|.||++-|||.|.+ |+.+|..|..-|+.|..+++.+             .+|.+.+++||+|+.-++. |   ++
T Consensus       136 ~g~el~gkTvGIiG~G~I-G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~  214 (324)
T COG0111         136 RGTELAGKTVGIIGLGRI-GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGL  214 (324)
T ss_pred             ccccccCCEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence            356889999999999996 9999999999999999998732             3588999999999988883 3   47


Q ss_pred             CCCCc---cCCCeEEEEeeccCC
Q 022295          224 IKGSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       224 i~~~~---vk~gavVIDvg~~~~  243 (299)
                      |+.+.   +|+|+++|+++.-.+
T Consensus       215 i~~~~~a~MK~gailIN~aRG~v  237 (324)
T COG0111         215 INAEELAKMKPGAILINAARGGV  237 (324)
T ss_pred             cCHHHHhhCCCCeEEEECCCcce
Confidence            87755   489999999987654

>PLN03139 formate dehydrogenase; Provisional

Probab=97.78  E-value=5e-05  Score=74.35  Aligned_cols=132  Identities=19%  Similarity=0.221  Sum_probs=87.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCC----CcC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQA----MMI  224 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p----~~i  224 (299)
                      .+|.||+|.|||.|.+ |+.+|..|...|+.|..+++..              .++.+.+++||+|+..++..    ++|
T Consensus       195 ~~L~gktVGIVG~G~I-G~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li  273 (386)
T PLN03139        195 YDLEGKTVGTVGAGRI-GRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF  273 (386)
T ss_pred             cCCCCCEEEEEeecHH-HHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh
Confidence            4799999999999996 9999999999999998887541              26788999999999988742    357


Q ss_pred             CCCc---cCCCeEEEEeeccCCCCCc-----cCCCce---eeccCCchhh--------hhhhceeccCCCCccHHHHHHH
Q 022295          225 KGSW---IKPGAAVIDVGTNAVDDST-----KKSGYR---LVGDVDFHEA--------CKVAGCVTPVPGGVGPMTVAML  285 (299)
Q Consensus       225 ~~~~---vk~gavVIDvg~~~~~~~~-----~~~g~k---l~GDvdf~~~--------~~~a~~iTPVPGGVGp~T~a~L  285 (299)
                      +.+.   +|+|+++|++|.-.+-|..     -.+| +   ...||=+.+=        .--.-.+||=-+|.-.-+..-+
T Consensus       274 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG-~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~  352 (386)
T PLN03139        274 NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG-HIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRY  352 (386)
T ss_pred             CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC-CceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHH
Confidence            6644   5899999999976543210     0011 3   3568843221        1113367886666544444333


Q ss_pred             HHHHHHHHHHH
Q 022295          286 LRNTLDGAKRV  296 (299)
Q Consensus       286 ~~n~v~a~~~~  296 (299)
                      ...+++..++|
T Consensus       353 ~~~~~~nl~~~  363 (386)
T PLN03139        353 AAGVKDMLDRY  363 (386)
T ss_pred             HHHHHHHHHHH
Confidence            34344444444

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.74  E-value=0.00014  Score=69.20  Aligned_cols=77  Identities=29%  Similarity=0.413  Sum_probs=59.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhh-CC-CeEEEEcCCC--------------------CChhhhccCCcEEEEecCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLK-AD-ATVTIVHSHT--------------------TDPESIVREADIVIAAAGQA  221 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~-~g-atVtv~~~~t--------------------~~l~~~~~~ADIVIsa~g~p  221 (299)
                      ....+++.|||.|.. |++.+..+.. ++ .+|++++++.                    .++.+.+++|||||++|+.+
T Consensus       122 ~~~~~~v~iiG~G~~-a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        122 RKDASRLLVVGTGRL-ASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST  200 (314)
T ss_pred             CCCCceEEEECCcHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence            346799999999886 9999875543 44 6899998751                    23557889999999999977


Q ss_pred             Cc-CCCCccCCCeEEEEeecc
Q 022295          222 MM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       222 ~~-i~~~~vk~gavVIDvg~~  241 (299)
                      .. ++.+|++||++|.=+|.+
T Consensus       201 ~pvl~~~~l~~g~~i~~ig~~  221 (314)
T PRK06141        201 EPLVRGEWLKPGTHLDLVGNF  221 (314)
T ss_pred             CCEecHHHcCCCCEEEeeCCC
Confidence            64 788999999955445544

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.72  E-value=0.00012  Score=74.18  Aligned_cols=91  Identities=20%  Similarity=0.300  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhhCC----------CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------
Q 022295          151 PKGCLELLKRSGV----------TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------  201 (299)
Q Consensus       151 ~~av~~ll~~~~~----------~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------  201 (299)
                      .+|+++...+++.          ...|.+|+|+|+|.+ |...+..+...||.|++++.+.                   
T Consensus       139 y~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~i-GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~  217 (509)
T PRK09424        139 YRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFE  217 (509)
T ss_pred             HHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccc
Confidence            4677777777654          346899999998875 9999999999999988886441                   


Q ss_pred             --------------CC--------hhhhccCCcEEEEecCCCC-----cCCCCc---cCCCeEEEEeeccC
Q 022295          202 --------------TD--------PESIVREADIVIAAAGQAM-----MIKGSW---IKPGAAVIDVGTNA  242 (299)
Q Consensus       202 --------------~~--------l~~~~~~ADIVIsa~g~p~-----~i~~~~---vk~gavVIDvg~~~  242 (299)
                                    .+        +.+.++.+|+||+++|.|+     +++.++   +|+|.+|+|+|.+.
T Consensus       218 e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~  288 (509)
T PRK09424        218 EEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAEN  288 (509)
T ss_pred             cccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCC
Confidence                          01        0122367999999999754     666655   58999999999863

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.72  E-value=4.8e-05  Score=65.27  Aligned_cols=74  Identities=24%  Similarity=0.353  Sum_probs=55.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----c-CC---
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----M-IK---  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~-i~---  225 (299)
                      ++|-+||-|.+ |.++|..|.+.|.+|++++++.              .++.+.++++|+||+++..+.    . ..   
T Consensus         2 ~~Ig~IGlG~m-G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i   80 (163)
T PF03446_consen    2 MKIGFIGLGNM-GSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI   80 (163)
T ss_dssp             BEEEEE--SHH-HHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred             CEEEEEchHHH-HHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence            57999999886 9999999999999999999762              467788999999999998644    2 23   


Q ss_pred             CCccCCCeEEEEeeccC
Q 022295          226 GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       226 ~~~vk~gavVIDvg~~~  242 (299)
                      ...+++|.++||.+...
T Consensus        81 ~~~l~~g~iiid~sT~~   97 (163)
T PF03446_consen   81 LAGLRPGKIIIDMSTIS   97 (163)
T ss_dssp             GGGS-TTEEEEE-SS--
T ss_pred             hhccccceEEEecCCcc
Confidence            34568899999998653

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=97.71  E-value=0.00012  Score=71.67  Aligned_cols=171  Identities=19%  Similarity=0.252  Sum_probs=124.5

Q ss_pred             ccHHHHHHHHHHHHHc-CCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCC
Q 022295           52 DSQSYVSMKRKACAEV-GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH  130 (299)
Q Consensus        52 ~s~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~  130 (299)
                      ++.--...|.-.++++ ||++.-+++.. -+.+|+.+.++.+.  |.+-||+++-==-++-  ..+...+..+.|+.-||
T Consensus        98 ag~pVmeGKa~Lfk~faGid~~pI~ld~-~~~~ei~~~Vkal~--p~FgginLedi~ap~c--f~ie~~lr~~~~IPvFh  172 (432)
T COG0281          98 AGKPVMEGKAVLFKAFAGIDVLPIELDV-GTNNEIIEFVKALE--PTFGGINLEDIDAPRC--FAIEERLRYRMNIPVFH  172 (432)
T ss_pred             cCcchhhhHHHHHHHhcCCCceeeEeeC-CChHHHHHHHHHhh--hcCCCcceeecccchh--hHHHHHHhhcCCCCccc
Confidence            4444456677777665 68888888864 35678999999997  5799999874211111  24555556677888877


Q ss_pred             cccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCCC------
Q 022295          131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSHT------  201 (299)
Q Consensus       131 ~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~t------  201 (299)
                      .-          +.+----|..|++..|+-.|.+|+..++++.|+|-+ |-.++.+|...|.   .|++|+|+-      
T Consensus       173 DD----------qqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAA-giaia~~l~~~g~~~~~i~~~D~~G~l~~~r  241 (432)
T COG0281         173 DD----------QQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAA-GIAIADLLVAAGVKEENIFVVDRKGLLYDGR  241 (432)
T ss_pred             cc----------ccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHH-HHHHHHHHHHhCCCcccEEEEecCCcccCCC
Confidence            43          233223356889999999999999999999999988 9999999999997   599998751      


Q ss_pred             CCh-------------------hhhccCCcEEEEecCCCCcCCCCccCC---CeEEEEee
Q 022295          202 TDP-------------------ESIVREADIVIAAAGQAMMIKGSWIKP---GAAVIDVG  239 (299)
Q Consensus       202 ~~l-------------------~~~~~~ADIVIsa~g~p~~i~~~~vk~---gavVIDvg  239 (299)
                      .++                   .+.+..||++|..+|. +.+++|||+.   ..+|+=++
T Consensus       242 ~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfala  300 (432)
T COG0281         242 EDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSGV-GAFTEEMVKEMAKHPIIFALA  300 (432)
T ss_pred             cccccchHHHHHHHhhhccccccccccCCCEEEEcCCC-CCcCHHHHHHhccCCEEeecC
Confidence            010                   2356789999988887 8999999854   56666655

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.71  E-value=0.00022  Score=67.56  Aligned_cols=77  Identities=16%  Similarity=0.134  Sum_probs=62.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhh-CCC-eEEEEcCCC-------------------CChhhhccCCcEEEEecCCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLK-ADA-TVTIVHSHT-------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~-~ga-tVtv~~~~t-------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      +...++++|||.|.. |+..+..+.. ++. +|.+++++.                   .++++.+.+|||||++|++++
T Consensus       122 ~~~~~~v~IiGaG~q-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~  200 (304)
T PRK07340        122 PAPPGDLLLIGTGVQ-ARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT  200 (304)
T ss_pred             CCCCCEEEEECCcHH-HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence            456799999999886 9999988864 453 688887651                   246678899999999999877


Q ss_pred             c-CCCCccCCCeEEEEeeccC
Q 022295          223 M-IKGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       223 ~-i~~~~vk~gavVIDvg~~~  242 (299)
                      . ++. |+|||+.|.=+|.+.
T Consensus       201 Pl~~~-~~~~g~hi~~iGs~~  220 (304)
T PRK07340        201 PVYPE-AARAGRLVVAVGAFT  220 (304)
T ss_pred             ceeCc-cCCCCCEEEecCCCC
Confidence            5 565 899999999999753

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.71  E-value=7.3e-05  Score=73.73  Aligned_cols=80  Identities=24%  Similarity=0.357  Sum_probs=66.3

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------CChhhhccCCcEEEEecCC-C---CcCCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------TDPESIVREADIVIAAAGQ-A---MMIKGS  227 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------~~l~~~~~~ADIVIsa~g~-p---~~i~~~  227 (299)
                      +.+|.||++.|||.|.+ |+.+|..|...|++|..++++.          .++.+.+++||+|+..++. +   ++++.+
T Consensus       146 ~~~L~gktvGIiG~G~I-G~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~  224 (409)
T PRK11790        146 SFEVRGKTLGIVGYGHI-GTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAE  224 (409)
T ss_pred             cccCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHH
Confidence            35799999999999996 9999999999999999887532          2688999999999988873 2   477765


Q ss_pred             c---cCCCeEEEEeeccC
Q 022295          228 W---IKPGAAVIDVGTNA  242 (299)
Q Consensus       228 ~---vk~gavVIDvg~~~  242 (299)
                      .   +|+|+++|+++.-.
T Consensus       225 ~l~~mk~ga~lIN~aRG~  242 (409)
T PRK11790        225 ELALMKPGAILINASRGT  242 (409)
T ss_pred             HHhcCCCCeEEEECCCCc
Confidence            4   58999999999543

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.70  E-value=8.9e-05  Score=75.30  Aligned_cols=81  Identities=19%  Similarity=0.261  Sum_probs=66.7

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcEEEEecCCC----CcC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADIVIAAAGQA----MMI  224 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADIVIsa~g~p----~~i  224 (299)
                      +.+|.||++.|||.|.+ |+.+|..|...|++|..++++             ..++.+.+++||+|+..++..    +++
T Consensus       133 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li  211 (525)
T TIGR01327       133 GTELYGKTLGVIGLGRI-GSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI  211 (525)
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc
Confidence            45799999999999996 999999999999999988753             136889999999999988832    356


Q ss_pred             CCC---ccCCCeEEEEeeccCC
Q 022295          225 KGS---WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       225 ~~~---~vk~gavVIDvg~~~~  243 (299)
                      ..+   .+|+|+++||++.-.+
T Consensus       212 ~~~~l~~mk~ga~lIN~aRG~~  233 (525)
T TIGR01327       212 GAEELAKMKKGVIIVNCARGGI  233 (525)
T ss_pred             CHHHHhcCCCCeEEEEcCCCce
Confidence            554   3589999999997654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.66  E-value=0.0001  Score=74.82  Aligned_cols=81  Identities=20%  Similarity=0.298  Sum_probs=66.5

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCCC----CcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQA----MMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~p----~~i~  225 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|..++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       135 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~  213 (526)
T PRK13581        135 GVELYGKTLGIIGLGRI-GSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIG  213 (526)
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcC
Confidence            35689999999999986 9999999999999999887531            15678899999999988843    4676


Q ss_pred             CC---ccCCCeEEEEeeccCC
Q 022295          226 GS---WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       226 ~~---~vk~gavVIDvg~~~~  243 (299)
                      ++   .+|+|+++|+++.-..
T Consensus       214 ~~~l~~mk~ga~lIN~aRG~~  234 (526)
T PRK13581        214 AEELAKMKPGVRIINCARGGI  234 (526)
T ss_pred             HHHHhcCCCCeEEEECCCCce
Confidence            54   4589999999997654

>PRK12861 malic enzyme; Reviewed

Probab=97.63  E-value=0.00016  Score=76.22  Aligned_cols=172  Identities=17%  Similarity=0.219  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHcC-CceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcc
Q 022295           54 QSYVSMKRKACAEVG-IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPL  132 (299)
Q Consensus        54 ~~Y~~~k~k~~~~~G-i~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~  132 (299)
                      .-=...|.-.++.+| |++..+.+.. -+.+|+++.++.+.  |.+-||++.  --+.-+--++++....+=|+.-||.-
T Consensus        90 ~pvmeGK~~L~~~~agid~~di~~~~-~dpd~~v~~v~a~~--~~fg~i~lE--D~~~p~~f~il~~~~~~~~ipvf~DD  164 (764)
T PRK12861         90 KPVMEGKAVLFKKFAGIDVFDIEINE-TDPDKLVDIIAGLE--PTFGGINLE--DIKAPECFTVERKLRERMKIPVFHDD  164 (764)
T ss_pred             cchHHHHHHHHhhccCCCccccccCC-CCHHHHHHHHHHHH--hhcCCceee--eccCchHHHHHHHHHhcCCCCeeccc
Confidence            344456777777765 8877777753 56789999998887  467775542  11111223344444333356555532


Q ss_pred             cccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCC---------
Q 022295          133 NIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSH---------  200 (299)
Q Consensus       133 n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~---------  200 (299)
                                ..+---.|..|++..|+-.+.+++..++++.|+|.+ |..++.+|...|.   .+++|+++         
T Consensus       165 ----------~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaA-g~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~  233 (764)
T PRK12861        165 ----------QHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAA-ALACLDLLVDLGLPVENIWVTDIEGVVYRGRTT  233 (764)
T ss_pred             ----------cchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHH-HHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcc
Confidence                      333334457789999999999999999999999998 9999999999998   58999854         


Q ss_pred             --------------CCChhhhccCCcEEEEecCCCCcCCCCccCC---CeEEEEeeccCC
Q 022295          201 --------------TTDPESIVREADIVIAAAGQAMMIKGSWIKP---GAAVIDVGTNAV  243 (299)
Q Consensus       201 --------------t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~---gavVIDvg~~~~  243 (299)
                                    ..+|.+.++.+|++|...+ |+.+++||++.   ..+|+=++ ||.
T Consensus       234 ~l~~~k~~~a~~~~~~~L~eai~~advliG~S~-~g~ft~e~v~~Ma~~PIIFaLs-NPt  291 (764)
T PRK12861        234 LMDPDKERFAQETDARTLAEVIGGADVFLGLSA-GGVLKAEMLKAMAARPLILALA-NPT  291 (764)
T ss_pred             cCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCC-CCCCCHHHHHHhccCCEEEECC-CCC
Confidence                          1357899999999998776 89999999854   67777776 554

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.59  E-value=7.9e-05  Score=59.38  Aligned_cols=60  Identities=35%  Similarity=0.482  Sum_probs=45.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-----------CChhhhccCCcEEEEecCCCCc
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-----------TDPESIVREADIVIAAAGQAMM  223 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-----------~~l~~~~~~ADIVIsa~g~p~~  223 (299)
                      ++++|++|+|||.|. +|..-+..|++.||+||++....           ..+++.+..+|+||.|++.+.+
T Consensus         3 l~l~~~~vlVvGgG~-va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~   73 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGP-VAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPEL   73 (103)
T ss_dssp             E--TT-EEEEEEESH-HHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HHH
T ss_pred             EEcCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHHH
Confidence            478999999999877 59999999999999999997652           3445678899999999988753

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.50  E-value=0.00026  Score=66.68  Aligned_cols=72  Identities=32%  Similarity=0.470  Sum_probs=59.0

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------CChhhhccCCcEEEEecCCCC-----cCCC--
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------TDPESIVREADIVIAAAGQAM-----MIKG--  226 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~-----~i~~--  226 (299)
                      +|..||-|.+ |.|+|..|.+.|..|++.+++.               .+..+..+.||+||+.++.+.     ++.+  
T Consensus         2 kIafIGLG~M-G~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           2 KIAFIGLGIM-GSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             eEEEEcCchh-hHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            6899999987 9999999999999999999863               244578999999999999654     2332  


Q ss_pred             --CccCCCeEEEEeecc
Q 022295          227 --SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 --~~vk~gavVIDvg~~  241 (299)
                        +..+||.++||..+.
T Consensus        81 ~~~~~~~G~i~IDmSTi   97 (286)
T COG2084          81 LLEGLKPGAIVIDMSTI   97 (286)
T ss_pred             hhhcCCCCCEEEECCCC
Confidence              335789999999875

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=97.47  E-value=7e-05  Score=57.62  Aligned_cols=60  Identities=22%  Similarity=0.346  Sum_probs=46.1

Q ss_pred             HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc
Q 022295           58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL  122 (299)
Q Consensus        58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p  122 (299)
                      .++++.++++|++..|..++  +.++++.+.++.+.. +++.|++|++|+++.+  ..+++.+++
T Consensus        13 ~~hn~~f~~~g~~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~~VT~P~K~~~--~~~~D~~~~   72 (83)
T PF08501_consen   13 LIHNAAFEALGLDAVYIPFE--VEPEDLEDFLDALRA-PNFRGLNVTMPHKEAA--IPYLDELSP   72 (83)
T ss_dssp             HHHHHHHHHTTSSEEEEEEE--TSTTCHHHHHHHHHH-TTESEEEE-TTSTTHH--GGGSSEE-H
T ss_pred             HHHHHHHHHcCCCcEEEEee--cCHHHHHHHHHHHhc-CCCCeeeecchHHHHH--HHHhccCCH
Confidence            47899999999999999886  667788888888887 7899999999999543  334444444

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.44  E-value=0.00029  Score=67.56  Aligned_cols=81  Identities=22%  Similarity=0.379  Sum_probs=66.7

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecC-CC---CcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAG-QA---MMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g-~p---~~i~  225 (299)
                      +.++.||++-|||.|.+ |+.+|+.|..-|+.|...+++.            -++.+.+++||+|+...+ .|   |+|.
T Consensus       141 ~~~l~gktvGIiG~GrI-G~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin  219 (324)
T COG1052         141 GFDLRGKTLGIIGLGRI-GQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLIN  219 (324)
T ss_pred             ccCCCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcC
Confidence            35789999999999997 9999999998889998887653            137789999999998877 33   4787


Q ss_pred             CCc---cCCCeEEEEeeccCC
Q 022295          226 GSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       226 ~~~---vk~gavVIDvg~~~~  243 (299)
                      .+.   +|+|+++|++|.-.+
T Consensus       220 ~~~l~~mk~ga~lVNtaRG~~  240 (324)
T COG1052         220 AEELAKMKPGAILVNTARGGL  240 (324)
T ss_pred             HHHHHhCCCCeEEEECCCccc
Confidence            755   589999999997654

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.43  E-value=0.00021  Score=61.44  Aligned_cols=115  Identities=14%  Similarity=0.160  Sum_probs=71.2

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-CCCh--------------hhhccCCcEEEEecCCCCc--C
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-TTDP--------------ESIVREADIVIAAAGQAMM--I  224 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-t~~l--------------~~~~~~ADIVIsa~g~p~~--i  224 (299)
                      .++++|++|+|||.|. ||.-.+..|+..|+.|+++... ++++              ++.+.+||+||.||+.+..  .
T Consensus         8 ~l~l~~~~vlVvGGG~-va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~   86 (157)
T PRK06719          8 MFNLHNKVVVIIGGGK-IAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMM   86 (157)
T ss_pred             EEEcCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHH
Confidence            3578999999999777 5999999999999999998532 1111              1347889999999997753  1


Q ss_pred             CCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhh---hceeccCCCCccHHHHHHHHHHHHH
Q 022295          225 KGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV---AGCVTPVPGGVGPMTVAMLLRNTLD  291 (299)
Q Consensus       225 ~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~---a~~iTPVPGGVGp~T~a~L~~n~v~  291 (299)
                      -...-+.+. .+.+.-++.          . ||+-|.+.-+.   .-++|  -||-+|.-...|=+++-.
T Consensus        87 i~~~a~~~~-~vn~~d~~~----------~-~~f~~pa~v~~~~l~iais--T~G~sP~la~~lr~~ie~  142 (157)
T PRK06719         87 VKQAAHDFQ-WVNVVSDGT----------E-SSFHTPGVIRNDEYVVTIS--TSGKDPSFTKRLKQELTS  142 (157)
T ss_pred             HHHHHHHCC-cEEECCCCC----------c-CcEEeeeEEEECCeEEEEE--CCCcChHHHHHHHHHHHH
Confidence            122223333 333332221          1 33334443222   22333  478888888777665543

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.42  E-value=0.0003  Score=68.51  Aligned_cols=73  Identities=19%  Similarity=0.332  Sum_probs=58.1

Q ss_pred             CcEEEEEc-CCccchHHHHHHHhhCCCeEEEEcCCC-CChhhhccCCcEEEEecCCCC---cCC--CCccCCCeEEEEee
Q 022295          167 GKRAVVVG-RSNIVGLPVSLLLLKADATVTIVHSHT-TDPESIVREADIVIAAAGQAM---MIK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       167 gk~vvViG-~s~~vG~pla~lL~~~gatVtv~~~~t-~~l~~~~~~ADIVIsa~g~p~---~i~--~~~vk~gavVIDvg  239 (299)
                      .++|+||| .|. +|..++..|.+.|..|+++++.. .+..+.+++||+||.|++...   ++.  .. +++|++|+|+|
T Consensus        98 ~~~I~IiGG~Gl-mG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~  175 (374)
T PRK11199         98 LRPVVIVGGKGQ-LGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLT  175 (374)
T ss_pred             cceEEEEcCCCh-hhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECC
Confidence            47899999 555 59999999999999999998754 356677899999999998433   221  12 78999999998


Q ss_pred             cc
Q 022295          240 TN  241 (299)
Q Consensus       240 ~~  241 (299)
                      ..
T Consensus       176 Sv  177 (374)
T PRK11199        176 SV  177 (374)
T ss_pred             Cc
Confidence            73

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.37  E-value=0.00039  Score=65.62  Aligned_cols=73  Identities=12%  Similarity=0.221  Sum_probs=59.0

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-CCChhhhccCCcEEEEecCCCCc---C---CCCccCCCeEEEEe
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-TTDPESIVREADIVIAAAGQAMM---I---KGSWIKPGAAVIDV  238 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-t~~l~~~~~~ADIVIsa~g~p~~---i---~~~~vk~gavVIDv  238 (299)
                      .+++|.|||.|.+ |.++|..|.+.|.+|++.+++ +.++.+.+++||+||.+++...+   +   .+..+++++++||.
T Consensus         3 ~~m~I~iiG~G~~-G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~   81 (308)
T PRK14619          3 QPKTIAILGAGAW-GSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA   81 (308)
T ss_pred             CCCEEEEECccHH-HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence            4678999998875 999999999999999999875 35788889999999999986532   2   22236788999997


Q ss_pred             e
Q 022295          239 G  239 (299)
Q Consensus       239 g  239 (299)
                      .
T Consensus        82 s   82 (308)
T PRK14619         82 T   82 (308)
T ss_pred             C
Confidence            5

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.32  E-value=0.00057  Score=65.33  Aligned_cols=75  Identities=17%  Similarity=0.348  Sum_probs=57.3

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhh--CCCeEEEEcCCC--------------------CChhhhccCCcEEEEecCCCC-
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLK--ADATVTIVHSHT--------------------TDPESIVREADIVIAAAGQAM-  222 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~--~gatVtv~~~~t--------------------~~l~~~~~~ADIVIsa~g~p~-  222 (299)
                      .-+++.|||.|.. |+..++.|..  ...+|.+++++.                    .+.++.+++|||||++|++.. 
T Consensus       127 ~~~~lgiiG~G~q-A~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P  205 (325)
T TIGR02371       127 DSSVLGIIGAGRQ-AWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKP  205 (325)
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCc
Confidence            3578999998875 8875555433  235788886541                    356688999999999998655 


Q ss_pred             cCCCCccCCCeEEEEeecc
Q 022295          223 MIKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       223 ~i~~~~vk~gavVIDvg~~  241 (299)
                      ++..+|+|||+.|.-+|.+
T Consensus       206 ~~~~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       206 VVKADWVSEGTHINAIGAD  224 (325)
T ss_pred             EecHHHcCCCCEEEecCCC
Confidence            5799999999999999965

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.29  E-value=0.00066  Score=64.58  Aligned_cols=40  Identities=30%  Similarity=0.659  Sum_probs=27.3

Q ss_pred             ChhhhccCCcEEEEecCCCC---cCCCCccCCCeEEEEeeccC
Q 022295          203 DPESIVREADIVIAAAGQAM---MIKGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       203 ~l~~~~~~ADIVIsa~g~p~---~i~~~~vk~gavVIDvg~~~  242 (299)
                      +.++.+++|||||++|++..   +++.+|++||+.|.-+|.+.
T Consensus       185 ~~~~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi~~iGs~~  227 (313)
T PF02423_consen  185 SAEEAVRGADIIVTATPSTTPAPVFDAEWLKPGTHINAIGSYT  227 (313)
T ss_dssp             SHHHHHTTSSEEEE----SSEEESB-GGGS-TT-EEEE-S-SS
T ss_pred             chhhhcccCCEEEEccCCCCCCccccHHHcCCCcEEEEecCCC
Confidence            57899999999999999655   68999999999999999763

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=97.29  E-value=0.0063  Score=58.05  Aligned_cols=188  Identities=14%  Similarity=0.109  Sum_probs=116.0

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCC-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCC-CCHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYG-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-VSEA   83 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~   83 (299)
                      .+|+-+.+.++=.+.|-+...++++...     .+-+....++= .|+...-. +=..++.++|-++.++.-.+. +..+
T Consensus         8 ~ll~~~dls~~ei~~ll~~A~~~k~~~~~~~~~L~gk~l~~lF~-epSTRTR~-SFe~A~~~LGg~~i~l~~~~~~~~~~   85 (311)
T PRK14804          8 HLISWEDWSDSEILDLLDFAVHVKKNRVNYAGHMSGRSLAMLFQ-KTSTRTRV-SFEVAMTEMGGHGIYLDWMASNFQLS   85 (311)
T ss_pred             CcCchhhCCHHHHHHHHHHHHHHHhhhhccCcCCCCCEEEEEEc-CCchhHHH-HHHHHHHHcCCeEEEeCCCccccccc
Confidence            3566566654433444444444543210     11222222332 35444444 457899999999888865322 2223


Q ss_pred             HHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhC
Q 022295           84 ELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSG  162 (299)
Q Consensus        84 el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~  162 (299)
                      .+.+..+-|+.  -+|+|.+-.|-.  -....+.+.    -   .+-.+|.|       .....||=+.+ ++.+.++.|
T Consensus        86 ~~~dt~~vls~--~~D~iv~R~~~~--~~~~~~a~~----~---~vPVINag-------~~~~HPtQaL~Dl~Ti~e~~g  147 (311)
T PRK14804         86 DIDLEARYLSR--NVSVIMARLKKH--EDLLVMKNG----S---QVPVINGC-------DNMFHPCQSLADIMTIALDSP  147 (311)
T ss_pred             cHHHHHHHHHh--cCCEEEEeCCCh--HHHHHHHHH----C---CCCEEECC-------CCCCChHHHHHHHHHHHHHhC
Confidence            34344666665  589999987633  222222221    1   23445643       22468998888 555556666


Q ss_pred             C-CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------CCChhhhccCCcEEEEe
Q 022295          163 V-TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       163 ~-~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------t~~l~~~~~~ADIVIsa  217 (299)
                      . +++|++|+++|.++-|.+.++.++...|+.|++++-.                      +.++.+.++.||+|.+-
T Consensus       148 ~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        148 EIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             CCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence            4 7999999999997788999999999999999999742                      24567888999999873

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.24  E-value=0.0007  Score=64.59  Aligned_cols=39  Identities=18%  Similarity=0.492  Sum_probs=34.3

Q ss_pred             ChhhhccCCcEEEEecCCCC-cCCCCccCCCeEEEEeecc
Q 022295          203 DPESIVREADIVIAAAGQAM-MIKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       203 ~l~~~~~~ADIVIsa~g~p~-~i~~~~vk~gavVIDvg~~  241 (299)
                      +.++.+++||||+++|++.. +++.+|++||+.|.=+|.+
T Consensus       185 ~~~~av~~ADIV~taT~s~~P~~~~~~l~~G~hi~~iGs~  224 (315)
T PRK06823        185 DAAEVAHAANLIVTTTPSREPLLQAEDIQPGTHITAVGAD  224 (315)
T ss_pred             CHHHHhcCCCEEEEecCCCCceeCHHHcCCCcEEEecCCC
Confidence            56788999999999999655 5899999999999999965

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.23  E-value=0.0012  Score=65.95  Aligned_cols=129  Identities=22%  Similarity=0.230  Sum_probs=75.7

Q ss_pred             HHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----ChhhhccCCcEEEEecCC-CCcCCCCccCCC
Q 022295          158 LKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----DPESIVREADIVIAAAGQ-AMMIKGSWIKPG  232 (299)
Q Consensus       158 l~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----~l~~~~~~ADIVIsa~g~-p~~i~~~~vk~g  232 (299)
                      |.+.+.++++++|+|+|.|.+ |..+|..|.++|++|++++....    .+.+.+++..+-+.. |. +.    ......
T Consensus         7 ~~~~~~~~~~~~v~viG~G~~-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~-~~~~~----~~~~~D   80 (480)
T PRK01438          7 LTSWHSDWQGLRVVVAGLGVS-GFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL-GPGPT----LPEDTD   80 (480)
T ss_pred             hhhcccCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE-CCCcc----ccCCCC
Confidence            566778889999999998886 99999999999999999985532    122333333332211 11 11    111233


Q ss_pred             eEEEEeeccCCCCC---ccCCCceeeccCCch-hhhh---hhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          233 AAVIDVGTNAVDDS---TKKSGYRLVGDVDFH-EACK---VAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       233 avVIDvg~~~~~~~---~~~~g~kl~GDvdf~-~~~~---~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      .+|+-.|+++....   -...|-.+.|+.++- ...+   +...| -|-|-.|.=|+.-|+.++++..
T Consensus        81 ~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I-~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         81 LVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWL-AVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEE-EEeCCCcHHHHHHHHHHHHHHc
Confidence            44555555442110   001122466666652 2211   11112 3568889999999999988754

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.20  E-value=0.0006  Score=58.20  Aligned_cols=69  Identities=29%  Similarity=0.442  Sum_probs=51.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------CCChhhhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      +|+|+|+|.. |.++|..|..+|.+|++..++                            |.|+++.+++||+||.++++
T Consensus         1 KI~ViGaG~~-G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs   79 (157)
T PF01210_consen    1 KIAVIGAGNW-GTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS   79 (157)
T ss_dssp             EEEEESSSHH-HHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH
Confidence            6899998886 999999999999999999754                            35788999999999999986


Q ss_pred             CCc---C--CCCccCCCeEEEEe
Q 022295          221 AMM---I--KGSWIKPGAAVIDV  238 (299)
Q Consensus       221 p~~---i--~~~~vk~gavVIDv  238 (299)
                      ..+   +  =..+++++..+|-+
T Consensus        80 ~~~~~~~~~l~~~l~~~~~ii~~  102 (157)
T PF01210_consen   80 QAHREVLEQLAPYLKKGQIIISA  102 (157)
T ss_dssp             GGHHHHHHHHTTTSHTT-EEEET
T ss_pred             HHHHHHHHHHhhccCCCCEEEEe
Confidence            442   2  12445778777754

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.16  E-value=0.00081  Score=63.11  Aligned_cols=93  Identities=16%  Similarity=0.328  Sum_probs=75.8

Q ss_pred             CCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhC----CC-------eEEEEcCC-----------------
Q 022295          149 CTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA----DA-------TVTIVHSH-----------------  200 (299)
Q Consensus       149 cT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~----ga-------tVtv~~~~-----------------  200 (299)
                      ++-.|++..++-.+.+|+..+++++|+|.+ |..++.+|...    |.       .+++|+++                 
T Consensus         7 V~lAgllnAlk~~g~~l~d~~iv~~GAGsA-g~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~   85 (279)
T cd05312           7 VALAGLLAALRITGKPLSDQRILFLGAGSA-GIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPF   85 (279)
T ss_pred             HHHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHH
Confidence            456789999999999999999999999987 99999888765    76       68899764                 


Q ss_pred             ---C-----CChhhhcc--CCcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295          201 ---T-----TDPESIVR--EADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV  243 (299)
Q Consensus       201 ---t-----~~l~~~~~--~ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~  243 (299)
                         +     .+|.+.++  ++|++|..++.|+.+++++|+      +.-+|+=++ ||.
T Consensus        86 a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  143 (279)
T cd05312          86 ARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS-NPT  143 (279)
T ss_pred             HhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence               1     25778888  899999999999999999885      466777666 443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.13  E-value=0.00088  Score=60.06  Aligned_cols=59  Identities=31%  Similarity=0.450  Sum_probs=47.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-Ch-----------------hhhccCCcEEEEecCCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-DP-----------------ESIVREADIVIAAAGQAM  222 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-~l-----------------~~~~~~ADIVIsa~g~p~  222 (299)
                      ++++||+|+|||.|. ||..-+..|++.||.||++..... .+                 .+.+..+|+||.|||.+.
T Consensus         5 l~l~gk~vlVvGgG~-va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~   81 (205)
T TIGR01470         5 ANLEGRAVLVVGGGD-VALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE   81 (205)
T ss_pred             EEcCCCeEEEECcCH-HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH
Confidence            468999999999776 599999999999999999965421 11                 234778999999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.12  E-value=0.0008  Score=60.60  Aligned_cols=72  Identities=29%  Similarity=0.320  Sum_probs=57.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------ChhhhccCCcEEEEecCCCCcC---C--
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------DPESIVREADIVIAAAGQAMMI---K--  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------~l~~~~~~ADIVIsa~g~p~~i---~--  225 (299)
                      +++.|+|+|++ |..++..|...|.+|++-+|+.+                 ...+..+.|||||.|++.....   .  
T Consensus         2 ~~~~i~GtGni-G~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l   80 (211)
T COG2085           2 MIIAIIGTGNI-GSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL   80 (211)
T ss_pred             cEEEEeccChH-HHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence            46899999996 99999999999999999987643                 2447889999999999965542   1  


Q ss_pred             CCccCCCeEEEEeeccC
Q 022295          226 GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       226 ~~~vk~gavVIDvg~~~  242 (299)
                      .+++. |.+|||.. ||
T Consensus        81 ~~~~~-~KIvID~t-np   95 (211)
T COG2085          81 RDALG-GKIVIDAT-NP   95 (211)
T ss_pred             HHHhC-CeEEEecC-CC
Confidence            23344 89999987 44

>PLN02712 arogenate dehydrogenase

Probab=97.12  E-value=0.00088  Score=70.01  Aligned_cols=80  Identities=14%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------Chhhhcc-CCcEEEEecCCCC---c
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------DPESIVR-EADIVIAAAGQAM---M  223 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------~l~~~~~-~ADIVIsa~g~p~---~  223 (299)
                      .+.++++++|.|||.|.+ |..++..|.+.|.+|+++++...             ++.+.+. .+|+||.+++...   +
T Consensus       363 ~~~~~~~~kIgIIGlG~m-G~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v  441 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNF-GQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV  441 (667)
T ss_pred             ccCCCCCCEEEEEecCHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence            356779999999998885 99999999999999998876532             3334454 5899999988432   2


Q ss_pred             C---CCCccCCCeEEEEeecc
Q 022295          224 I---KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       224 i---~~~~vk~gavVIDvg~~  241 (299)
                      +   ....+++|++|+|++..
T Consensus       442 i~~l~~~~lk~g~ivvDv~Sv  462 (667)
T PLN02712        442 LKSLPFQRLKRSTLFVDVLSV  462 (667)
T ss_pred             HHHHHHhcCCCCcEEEECCCc
Confidence            2   22357899999999864

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=97.10  E-value=0.00076  Score=62.50  Aligned_cols=93  Identities=17%  Similarity=0.242  Sum_probs=75.3

Q ss_pred             CCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-----------eEEEEcCC-----------------
Q 022295          149 CTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-----------TVTIVHSH-----------------  200 (299)
Q Consensus       149 cT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-----------tVtv~~~~-----------------  200 (299)
                      +|-.|++..++-.+.+|+..+++++|+|-+ |..++.+|...+.           .+++|+++                 
T Consensus         7 V~lAgllnAlk~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~   85 (254)
T cd00762           7 VAVAGLLAALKVTKKKISEHKVLFNGAGAA-ALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHL   85 (254)
T ss_pred             HHHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHH
Confidence            356789999999999999999999999987 9999998876543           58888764                 


Q ss_pred             ---------CCChhhhcc--CCcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295          201 ---------TTDPESIVR--EADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV  243 (299)
Q Consensus       201 ---------t~~l~~~~~--~ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~  243 (299)
                               ..+|.+.++  ++|++|..++.|+.+++|+|+      +.-+|+=++ ||.
T Consensus        86 ~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  144 (254)
T cd00762          86 ARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS-NPT  144 (254)
T ss_pred             HHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC-CcC
Confidence                     125778888  999999999999999999985      356776666 443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.10  E-value=0.0008  Score=64.65  Aligned_cols=80  Identities=18%  Similarity=0.327  Sum_probs=62.0

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------ChhhhccCCcEEEEecC-CC---CcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------DPESIVREADIVIAAAG-QA---MMIK  225 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------~l~~~~~~ADIVIsa~g-~p---~~i~  225 (299)
                      .++.||+|.|+|.|.+ |+.+|..|..-|+.+.-+.++..             ++.+.++++|+||.+.+ .+   |++.
T Consensus       158 ~~~~gK~vgilG~G~I-G~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liN  236 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRI-GKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLIN  236 (336)
T ss_pred             ccccCCEEEEecCcHH-HHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhh
Confidence            5789999999999997 99999999988854444443322             67788999999998887 33   3676


Q ss_pred             C---CccCCCeEEEEeeccCC
Q 022295          226 G---SWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       226 ~---~~vk~gavVIDvg~~~~  243 (299)
                      +   ++.|+|+++|+++.-..
T Consensus       237 k~~~~~mk~g~vlVN~aRG~i  257 (336)
T KOG0069|consen  237 KKFIEKMKDGAVLVNTARGAI  257 (336)
T ss_pred             HHHHHhcCCCeEEEecccccc
Confidence            5   45699999999986543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.10  E-value=0.00088  Score=62.51  Aligned_cols=72  Identities=18%  Similarity=0.338  Sum_probs=56.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----c-CCC---
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----M-IKG---  226 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~-i~~---  226 (299)
                      +|.|||.|.+ |.+++..|++.|..|++++++.              .+..+.+++||+||.+++.+.    . ...   
T Consensus         1 ~IgvIG~G~m-G~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~   79 (291)
T TIGR01505         1 KVGFIGLGIM-GSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGI   79 (291)
T ss_pred             CEEEEEecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchH
Confidence            4789998885 9999999999999999998652              356678899999999998542    1 121   


Q ss_pred             -CccCCCeEEEEeecc
Q 022295          227 -SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 -~~vk~gavVIDvg~~  241 (299)
                       ..+++|+++||.+..
T Consensus        80 ~~~~~~g~iivd~st~   95 (291)
T TIGR01505        80 IEGAKPGKTLVDMSSI   95 (291)
T ss_pred             hhcCCCCCEEEECCCC
Confidence             245789999998653

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.06  E-value=0.0013  Score=63.66  Aligned_cols=74  Identities=14%  Similarity=0.269  Sum_probs=50.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhh-CC-CeEEEEcCC--------------------CCChhhhccCCcEEEEecCCC---C
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLK-AD-ATVTIVHSH--------------------TTDPESIVREADIVIAAAGQA---M  222 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~-~g-atVtv~~~~--------------------t~~l~~~~~~ADIVIsa~g~p---~  222 (299)
                      +++.|||.|.- ++.-++.+.. +. -+|++.+++                    ..+.++.+++||||+++|+++   .
T Consensus       130 ~~l~iiGaG~Q-A~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~P  208 (346)
T PRK07589        130 RTMALIGNGAQ-SEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNAT  208 (346)
T ss_pred             cEEEEECCcHH-HHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCCc
Confidence            56677776553 5544433322 22 256665543                    135778999999999999854   4


Q ss_pred             cCCCCccCCCeEEEEeeccC
Q 022295          223 MIKGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       223 ~i~~~~vk~gavVIDvg~~~  242 (299)
                      +++.+|++||+.|.=+|.+.
T Consensus       209 vl~~~~lkpG~hV~aIGs~~  228 (346)
T PRK07589        209 ILTDDMVEPGMHINAVGGDC  228 (346)
T ss_pred             eecHHHcCCCcEEEecCCCC
Confidence            68999999999999999643

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.06  E-value=0.0012  Score=62.62  Aligned_cols=76  Identities=11%  Similarity=0.155  Sum_probs=57.1

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhC-C-CeEEEEcCCC---------------------CChhhhccCCcEEEEecCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKA-D-ATVTIVHSHT---------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~-g-atVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      .-+++.|||.|.- |+.-+..+..- + -+|.+.+++.                     .+.++.+++||||+++|++..
T Consensus       116 da~~l~iiGaG~Q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~  194 (301)
T PRK06407        116 NVENFTIIGSGFQ-AETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT  194 (301)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence            4578888887765 77666655532 3 3677765441                     356788999999999999765


Q ss_pred             -cCCCCccCCCeEEEEeeccC
Q 022295          223 -MIKGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       223 -~i~~~~vk~gavVIDvg~~~  242 (299)
                       +++.+|++||+.|.=+|.+.
T Consensus       195 P~~~~~~l~pg~hV~aiGs~~  215 (301)
T PRK06407        195 PIFNRKYLGDEYHVNLAGSNY  215 (301)
T ss_pred             cEecHHHcCCCceEEecCCCC
Confidence             58999999999999999753

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=97.06  E-value=0.001  Score=63.81  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=56.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCCCC---cCCC-
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQAM---MIKG-  226 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~p~---~i~~-  226 (299)
                      .|+||+|.|||.|.+ |+++|..|...|..|++.++..             .++.+.+++||+|+..++.+.   ++.. 
T Consensus        13 ~LkgKtVGIIG~GsI-G~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~e   91 (335)
T PRK13403         13 LLQGKTVAVIGYGSQ-GHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAE   91 (335)
T ss_pred             hhCcCEEEEEeEcHH-HHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence            478999999999886 9999999999999999986532             157788999999999887533   3432 


Q ss_pred             --CccCCCeEE
Q 022295          227 --SWIKPGAAV  235 (299)
Q Consensus       227 --~~vk~gavV  235 (299)
                        ..+++|+++
T Consensus        92 il~~MK~GaiL  102 (335)
T PRK13403         92 VEENLREGQML  102 (335)
T ss_pred             HHhcCCCCCEE
Confidence              446888755

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.05  E-value=0.0013  Score=61.42  Aligned_cols=74  Identities=23%  Similarity=0.362  Sum_probs=57.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----cC-C---
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----MI-K---  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~i-~---  225 (299)
                      ++|.|||.|.+ |.+++..|.+.|..|++++++.              .+..+.++++|+||.+++.+.    .+ .   
T Consensus         3 ~~IgviG~G~m-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~   81 (296)
T PRK11559          3 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG   81 (296)
T ss_pred             ceEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence            47999998875 9999999999999999987652              356677899999999998433    22 1   


Q ss_pred             -CCccCCCeEEEEeeccC
Q 022295          226 -GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       226 -~~~vk~gavVIDvg~~~  242 (299)
                       ...+++|++++|++...
T Consensus        82 ~~~~~~~g~iiid~st~~   99 (296)
T PRK11559         82 IIEGAKPGTVVIDMSSIA   99 (296)
T ss_pred             HhhcCCCCcEEEECCCCC
Confidence             13468899999997653

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.04  E-value=0.00095  Score=62.77  Aligned_cols=74  Identities=20%  Similarity=0.290  Sum_probs=58.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCcEEEEecCCCC----cCC-C--
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREADIVIAAAGQAM----MIK-G--  226 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~ADIVIsa~g~p~----~i~-~--  226 (299)
                      ++|.|||.|.+ |.+++..|++.|..|++++++              +.+..+.++++|+||.+++.+.    .+. .  
T Consensus         2 ~~Ig~IGlG~m-G~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~   80 (296)
T PRK15461          2 AAIAFIGLGQM-GSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG   80 (296)
T ss_pred             CeEEEEeeCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence            37999998886 999999999999999999865              2355677899999999998653    222 1  


Q ss_pred             --CccCCCeEEEEeeccC
Q 022295          227 --SWIKPGAAVIDVGTNA  242 (299)
Q Consensus       227 --~~vk~gavVIDvg~~~  242 (299)
                        ..+++|.++||.+...
T Consensus        81 i~~~l~~g~lvid~sT~~   98 (296)
T PRK15461         81 VCEGLSRDALVIDMSTIH   98 (296)
T ss_pred             HhhcCCCCCEEEECCCCC
Confidence              1357899999998754

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.04  E-value=0.0014  Score=61.64  Aligned_cols=73  Identities=27%  Similarity=0.335  Sum_probs=57.4

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------------CCh-hhhccCCcEEEEecCCCC---cC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------TDP-ESIVREADIVIAAAGQAM---MI  224 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------~~l-~~~~~~ADIVIsa~g~p~---~i  224 (299)
                      -++|+|+|.|.+ |+.++..|..+|..|.++.+..                  .+. .+....||+||.|++...   ++
T Consensus         3 ~~~v~IvG~Gli-G~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLM-GGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL   81 (279)
T ss_pred             CcEEEEECCchH-HHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHH
Confidence            368999998886 9999999999999888886542                  122 566778999999998543   22


Q ss_pred             ---CCCccCCCeEEEEeecc
Q 022295          225 ---KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       225 ---~~~~vk~gavVIDvg~~  241 (299)
                         .+ .+++|++|.|+|..
T Consensus        82 ~~l~~-~l~~g~iv~Dv~S~  100 (279)
T COG0287          82 KELAP-HLKKGAIVTDVGSV  100 (279)
T ss_pred             HHhcc-cCCCCCEEEecccc
Confidence               23 78999999999974

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=97.01  E-value=0.01  Score=57.20  Aligned_cols=148  Identities=14%  Similarity=0.056  Sum_probs=100.4

Q ss_pred             CcccHHHHHHHHHHHHHcCCceeeecCCCCC---CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccC
Q 022295           50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQV---SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDV  126 (299)
Q Consensus        50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDV  126 (299)
                      .|+...-. +=..++.++|.++.++.-. ++   ..|.+.+.++-|+.-  +|+|.+-.|-  |-...++.+..    . 
T Consensus        54 epSTRTR~-SFe~A~~~LGg~~i~l~~~-~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~--~~~~~~~a~~~----~-  122 (336)
T PRK03515         54 KDSTRTRC-SFEVAAYDQGARVTYLGPS-GSQIGHKESIKDTARVLGRM--YDGIQYRGYG--QEIVETLAEYA----G-  122 (336)
T ss_pred             CCChhHHH-HHHHHHHHcCCcEEEeCCc-cccCCCCCCHHHHHHHHHHh--CcEEEEEeCC--hHHHHHHHHhC----C-
Confidence            34444443 4577889999998886421 11   125677777777764  8899998763  22223332222    2 


Q ss_pred             CCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCC-CcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC---
Q 022295          127 DGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGV-TIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH---  200 (299)
Q Consensus       127 Dg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~-~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~---  200 (299)
                        +-.+|.+       .+...||=+.+ ++.+.++.|. +++|++++.+|-. ..|.+.++.++...|+++++|+-.   
T Consensus       123 --vPVINa~-------~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~  193 (336)
T PRK03515        123 --VPVWNGL-------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACW  193 (336)
T ss_pred             --CCEEECC-------CCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhc
Confidence              3445632       23568998888 5666666653 7999999999974 347999999999999999999632   


Q ss_pred             ----------------------CCChhhhccCCcEEEEe
Q 022295          201 ----------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       201 ----------------------t~~l~~~~~~ADIVIsa  217 (299)
                                            +.++.+.+++||+|.+-
T Consensus       194 ~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        194 PEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence                                  24667889999999974

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=97.00  E-value=0.016  Score=55.89  Aligned_cols=149  Identities=16%  Similarity=0.118  Sum_probs=100.3

Q ss_pred             CcccHHHHHHHHHHHHHcCCceeeecCCCC--CCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCC
Q 022295           50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQ--VSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD  127 (299)
Q Consensus        50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVD  127 (299)
                      .|+...-. +=..++.++|.++..+.-...  ...|.+.+.++-|+.-  +|+|.+-.|-.  -....+.+..    +  
T Consensus        55 epSTRTR~-SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y--~D~iv~R~~~~--~~~~~~a~~~----~--  123 (334)
T PRK01713         55 KTSTRTRC-AFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRM--YDAIEYRGFKQ--SIVNELAEYA----G--  123 (334)
T ss_pred             CCCchHHH-HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHh--CCEEEEEcCch--HHHHHHHHhC----C--
Confidence            34444444 447788999999877632110  1125677777777763  88999986632  2112222222    2  


Q ss_pred             CCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-----
Q 022295          128 GFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-----  200 (299)
Q Consensus       128 g~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-----  200 (299)
                       +-.+|.+       .+...||=+.+ ++.+.++.|.+++|+++++||-+ ..|.+.++.++...|++|++|.-.     
T Consensus       124 -vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~  195 (334)
T PRK01713        124 -VPVFNGL-------TDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPE  195 (334)
T ss_pred             -CCEEECC-------CCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCC
Confidence             3445642       23468998888 56666666667999999999985 447999999999999999999632     


Q ss_pred             --------------------CCChhhhccCCcEEEEe
Q 022295          201 --------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       201 --------------------t~~l~~~~~~ADIVIsa  217 (299)
                                          +.++.+.+++||+|.+-
T Consensus       196 ~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        196 ASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence                                24667889999999973

>PLN02256 arogenate dehydrogenase

Probab=96.98  E-value=0.0026  Score=60.39  Aligned_cols=76  Identities=18%  Similarity=0.279  Sum_probs=57.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhc-cCCcEEEEecCCCC---cCC-
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIV-READIVIAAAGQAM---MIK-  225 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~-~~ADIVIsa~g~p~---~i~-  225 (299)
                      +-+++++.|||.|.+ |..++..|.+.|.+|+++++..             .++.+.+ .++|+||.+++...   ++. 
T Consensus        33 ~~~~~kI~IIG~G~m-G~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~  111 (304)
T PLN02256         33 KSRKLKIGIVGFGNF-GQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRS  111 (304)
T ss_pred             cCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHh
Confidence            447789999998875 9999999999888888887553             1333444 46999999998432   222 


Q ss_pred             --CCccCCCeEEEEeec
Q 022295          226 --GSWIKPGAAVIDVGT  240 (299)
Q Consensus       226 --~~~vk~gavVIDvg~  240 (299)
                        ...++++++|+|++.
T Consensus       112 l~~~~l~~~~iviDv~S  128 (304)
T PLN02256        112 LPLQRLKRSTLFVDVLS  128 (304)
T ss_pred             hhhhccCCCCEEEecCC
Confidence              234688999999997

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.97  E-value=0.049  Score=52.51  Aligned_cols=186  Identities=13%  Similarity=0.088  Sum_probs=116.1

Q ss_pred             eeccHHHHHHHHHHHHHHHHHHHhcC--CC-----C-cEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCC--
Q 022295           11 IIDGKAVAQTIRSEIAEEVRLLSEKY--GK-----V-PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV--   80 (299)
Q Consensus        11 il~gk~~a~~i~~~~~~~v~~l~~~~--~~-----~-P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--   80 (299)
                      +|+-..+.++=.+.|-+....+++..  +.     . -.++.+ +- .|+...-. +=..++.++|.++.++.- .+.  
T Consensus         9 ~l~~~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~l~~l-F~-epSTRTR~-SFE~A~~~LGg~~i~l~~-~~s~~   84 (334)
T PRK12562          9 FLKLLDFTPAELNSLLQLAAKLKADKKNGKEVARLTGKNIALI-FE-KDSTRTRC-SFEVAAYDQGARVTYLGP-SGSQI   84 (334)
T ss_pred             cCchHhCCHHHHHHHHHHHHHHHhhhhcCCccccCCCCEEEEE-EC-CCCchhHH-HHHHHHHHcCCeEEEeCC-ccccC
Confidence            45555555544444444444454321  11     1 133333 32 34444333 457889999999987752 221  


Q ss_pred             -CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHH
Q 022295           81 -SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELL  158 (299)
Q Consensus        81 -~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll  158 (299)
                       ..|-+.+.++-|+.-  +|+|.+-.|-..-  ...+.+..    +   +-.+|.+       .+...||=+.+ ++.+.
T Consensus        85 ~kgEsl~Dtarvls~y--~D~iviR~~~~~~--~~~~a~~~----~---vPVINa~-------~~~~HPtQaLaDl~Ti~  146 (334)
T PRK12562         85 GHKESIKDTARVLGRM--YDGIQYRGHGQEV--VETLAEYA----G---VPVWNGL-------TNEFHPTQLLADLLTMQ  146 (334)
T ss_pred             CCCcCHHHHHHHHHHh--CCEEEEECCchHH--HHHHHHhC----C---CCEEECC-------CCCCChHHHHHHHHHHH
Confidence             125677777777764  8899998763321  12332222    2   3455653       23468998888 55555


Q ss_pred             HhhCC-CcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCC
Q 022295          159 KRSGV-TIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREA  211 (299)
Q Consensus       159 ~~~~~-~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~A  211 (299)
                      ++.|. .++|++++++|-. ..|.+.++.++...|+.|++|+-.                         +.++.+.++.|
T Consensus       147 e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~a  226 (334)
T PRK12562        147 EHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGA  226 (334)
T ss_pred             HHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            66654 6999999999974 347999999999999999999732                         24667889999


Q ss_pred             cEEEEec
Q 022295          212 DIVIAAA  218 (299)
Q Consensus       212 DIVIsa~  218 (299)
                      |+|.+-.
T Consensus       227 Dvvyt~~  233 (334)
T PRK12562        227 DFIYTDV  233 (334)
T ss_pred             CEEEEcC
Confidence            9999753

>PRK06046 alanine dehydrogenase; Validated

Probab=96.96  E-value=0.0037  Score=59.73  Aligned_cols=74  Identities=23%  Similarity=0.389  Sum_probs=57.3

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhh-CCC-eEEEEcCCC---------------------CChhhhccCCcEEEEecCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLK-ADA-TVTIVHSHT---------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~-~ga-tVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      .-+++.|||.|.. |+..+..|.. .+. .|.+++++.                     .++++.+. +|+|+++|+...
T Consensus       128 ~~~~vgiiG~G~q-a~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~  205 (326)
T PRK06046        128 DSKVVGIIGAGNQ-ARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK  205 (326)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence            3579999999886 9888877763 344 688887542                     24556665 999999999644


Q ss_pred             -cCCCCccCCCeEEEEeecc
Q 022295          223 -MIKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       223 -~i~~~~vk~gavVIDvg~~  241 (299)
                       +++.+|++||+.|.-+|.+
T Consensus       206 P~~~~~~l~~g~hV~~iGs~  225 (326)
T PRK06046        206 PVVKAEWIKEGTHINAIGAD  225 (326)
T ss_pred             cEecHHHcCCCCEEEecCCC
Confidence             6899999999999999965

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.96  E-value=0.001  Score=61.75  Aligned_cols=92  Identities=21%  Similarity=0.328  Sum_probs=71.1

Q ss_pred             CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhC----CC-------eEEEEcCC------------------
Q 022295          150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA----DA-------TVTIVHSH------------------  200 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~----ga-------tVtv~~~~------------------  200 (299)
                      |-.|++..++-.+.+|+..+++++|+|.+ |-.++.+|...    |.       .+++++++                  
T Consensus         8 ~lAgll~Al~~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a   86 (255)
T PF03949_consen    8 VLAGLLNALRVTGKKLSDQRIVFFGAGSA-GIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFA   86 (255)
T ss_dssp             HHHHHHHHHHHHTS-GGG-EEEEEB-SHH-HHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEeCCChh-HHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhh
Confidence            45789999999999999999999999987 99998887765    76       38999865                  


Q ss_pred             --------CCChhhhccCC--cEEEEecCCCCcCCCCccCC------CeEEEEeeccCC
Q 022295          201 --------TTDPESIVREA--DIVIAAAGQAMMIKGSWIKP------GAAVIDVGTNAV  243 (299)
Q Consensus       201 --------t~~l~~~~~~A--DIVIsa~g~p~~i~~~~vk~------gavVIDvg~~~~  243 (299)
                              ..+|.+.++.+  |++|..+|.|+.+++|+|+.      .-+|+=++ ||.
T Consensus        87 ~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS-NPt  144 (255)
T PF03949_consen   87 RKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS-NPT  144 (255)
T ss_dssp             BSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S-SSC
T ss_pred             ccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC-CCC
Confidence                    12788999999  99999999999999999853      45676665 443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.96  E-value=0.02  Score=54.45  Aligned_cols=151  Identities=17%  Similarity=0.258  Sum_probs=99.0

Q ss_pred             CcccHHHHHHHHHHHHHcCCceeeecCCCC-C-CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCC
Q 022295           50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-V-SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD  127 (299)
Q Consensus        50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~-~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVD  127 (299)
                      .|+...-. +=..++.++|.++..+.-.+. . ..|-+.+.++-|+.= ++|+|.+-.|-.  -.-.++.+.       -
T Consensus        54 ~pSTRTR~-SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y-~~D~iv~R~~~~--~~~~~~a~~-------~  122 (305)
T PRK00856         54 EPSTRTRL-SFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAM-GADAIVIRHPQS--GAARLLAES-------S  122 (305)
T ss_pred             cCCcchHH-HHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhc-CCCEEEEeCCCh--HHHHHHHHH-------C
Confidence            34444443 557889999999876643210 1 123455555555541 378899886633  211222222       1


Q ss_pred             CCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcCC----
Q 022295          128 GFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHSH----  200 (299)
Q Consensus       128 g~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~~----  200 (299)
                      .+-.+|.|-      .+...||=+.+ ++.+.++.| +++|++|+++|-+  +.|.+.++.++...|+++++|+-.    
T Consensus       123 ~vPVINa~~------g~~~HPtQ~LaDl~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~  195 (305)
T PRK00856        123 DVPVINAGD------GSHQHPTQALLDLLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLP  195 (305)
T ss_pred             CCCEEECCC------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCc
Confidence            234556431      13568998888 666666665 6999999999975  456999999999999999999732    


Q ss_pred             --------CCChhhhccCCcEEEEec
Q 022295          201 --------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       201 --------t~~l~~~~~~ADIVIsa~  218 (299)
                              +.++.++++.||+|.+-.
T Consensus       196 ~~~~~~~~~~d~~ea~~~aDvvyt~~  221 (305)
T PRK00856        196 EGMPEYGVHTDLDEVIEDADVVMMLR  221 (305)
T ss_pred             ccccceEEECCHHHHhCCCCEEEECC
Confidence                    356778999999999854

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.95  E-value=0.00061  Score=52.71  Aligned_cols=70  Identities=27%  Similarity=0.409  Sum_probs=51.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC---CeEEEE-cCCC---------------C-ChhhhccCCcEEEEecCCCCc--CCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD---ATVTIV-HSHT---------------T-DPESIVREADIVIAAAGQAMM--IKG  226 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g---atVtv~-~~~t---------------~-~l~~~~~~ADIVIsa~g~p~~--i~~  226 (299)
                      ++.+||.|++ |..++.-|.+.|   ..|+++ +++.               . +..+.+++||+||.++.-..+  +-.
T Consensus         1 kI~iIG~G~m-g~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~   79 (96)
T PF03807_consen    1 KIGIIGAGNM-GSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS   79 (96)
T ss_dssp             EEEEESTSHH-HHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred             CEEEECCCHH-HHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence            5789999886 999999999999   899965 6541               2 566888899999999875543  211


Q ss_pred             --CccCCCeEEEEee
Q 022295          227 --SWIKPGAAVIDVG  239 (299)
Q Consensus       227 --~~vk~gavVIDvg  239 (299)
                        ....++.++||+.
T Consensus        80 ~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   80 EIPHLLKGKLVISIA   94 (96)
T ss_dssp             HHHHHHTTSEEEEES
T ss_pred             HHhhccCCCEEEEeC
Confidence              3467788999874

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.90  E-value=0.089  Score=50.82  Aligned_cols=186  Identities=17%  Similarity=0.170  Sum_probs=118.2

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcC--C-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC-
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKY--G-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS-   81 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~--~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~-   81 (299)
                      .+|+-+.+.++=.+.|-+....+++..  +     .+.+....++= .|+...-. +=..++.++|-++.++.- .+.+ 
T Consensus         5 ~ll~i~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~-epSTRTR~-SFe~A~~~LGg~~i~l~~-~~ss~   81 (338)
T PRK02255          5 DFIDTNDFTKEEILDIIELGLKLKEAIKNGYYPQLLKNKTLGMIFE-QSSTRTRV-SFETAMTQLGGHAQYLAP-GQIQL   81 (338)
T ss_pred             CCcchhhCCHHHHHHHHHHHHHHHHHhhcCCccccCCCCEEEEEeC-CCCcchHH-HHHHHHHHcCCeEEEeCc-ccccC
Confidence            355655665554445544444554311  1     11233333333 45555444 457889999999887753 2221 


Q ss_pred             --HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHH
Q 022295           82 --EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELL  158 (299)
Q Consensus        82 --~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll  158 (299)
                        .|.+.+.++-|+.-  +|+|.+-.|  .|-....+.+.       -.+-.+|.+       .+...||=+.+ ++.+.
T Consensus        82 ~kgEsl~Dtarvls~y--~D~iviR~~--~~~~~~~~a~~-------~~vPVINa~-------~~~~HPtQaLaDl~Ti~  143 (338)
T PRK02255         82 GGHESLEDTARVLSRL--VDIIMARVD--RHQTVVELAKY-------ATVPVINGM-------SDYNHPTQELGDLFTMI  143 (338)
T ss_pred             CCCcCHHHHHHHHHHh--CcEEEEecC--ChHHHHHHHHh-------CCCCEEECC-------CCCCChHHHHHHHHHHH
Confidence              25577777777764  789988765  33222222222       123455632       23468998888 55555


Q ss_pred             HhhC--CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCC
Q 022295          159 KRSG--VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREA  211 (299)
Q Consensus       159 ~~~~--~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~A  211 (299)
                      ++.|  -+++|++|+++|-...|.+.++.+|...|++|++|+-.                         +.++.+.++.|
T Consensus       144 e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~a  223 (338)
T PRK02255        144 EHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDA  223 (338)
T ss_pred             HHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCC
Confidence            6664  36999999999997778999999999999999999632                         24667899999


Q ss_pred             cEEEE
Q 022295          212 DIVIA  216 (299)
Q Consensus       212 DIVIs  216 (299)
                      |+|.+
T Consensus       224 Dvvy~  228 (338)
T PRK02255        224 DFVYT  228 (338)
T ss_pred             CEEEE
Confidence            99998

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.86  E-value=0.0023  Score=57.80  Aligned_cols=114  Identities=26%  Similarity=0.349  Sum_probs=70.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-C-----------------ChhhhccCCcEEEEecCCCCc-
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-T-----------------DPESIVREADIVIAAAGQAMM-  223 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-~-----------------~l~~~~~~ADIVIsa~g~p~~-  223 (299)
                      ++++||+|+|||.|. ||.-=+.+|++.||+|++..-.. +                 -..+.+..+++||.||+.+.+ 
T Consensus         8 ~~l~~k~VlvvGgG~-va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln   86 (210)
T COG1648           8 LDLEGKKVLVVGGGS-VALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELN   86 (210)
T ss_pred             EEcCCCEEEEECCCH-HHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHH
Confidence            478999999999766 59888999999999999885332 1                 112456669999999998653 


Q ss_pred             --CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhh---ceeccCCCCccHHHHHHHHHHHHH
Q 022295          224 --IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVA---GCVTPVPGGVGPMTVAMLLRNTLD  291 (299)
Q Consensus       224 --i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a---~~iTPVPGGVGp~T~a~L~~n~v~  291 (299)
                        |-... ++-.+.+++.-.+          .+ +|+-|.+.-++.   -+|+  -||-+|+.+.+|.+.+-.
T Consensus        87 ~~i~~~a-~~~~i~vNv~D~p----------~~-~~f~~Pa~~~r~~l~iaIs--T~G~sP~la~~ir~~Ie~  145 (210)
T COG1648          87 ERIAKAA-RERRILVNVVDDP----------EL-CDFIFPAIVDRGPLQIAIS--TGGKSPVLARLLREKIEA  145 (210)
T ss_pred             HHHHHHH-HHhCCceeccCCc----------cc-CceecceeeccCCeEEEEE--CCCCChHHHHHHHHHHHH
Confidence              21111 1112333333222          11 445455533332   2233  378888888888776543

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.84  E-value=0.014  Score=56.16  Aligned_cols=185  Identities=13%  Similarity=-0.005  Sum_probs=115.0

Q ss_pred             eeccHHHHHHHHHHHHHHHHHHHhcC--C-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC--
Q 022295           11 IIDGKAVAQTIRSEIAEEVRLLSEKY--G-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS--   81 (299)
Q Consensus        11 il~gk~~a~~i~~~~~~~v~~l~~~~--~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~--   81 (299)
                      +|+-+.+.++=.+.|-+....+++..  +     -+.+....++= .|+..... +=..++.++|.++.++.  ...+  
T Consensus         9 ~ls~~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~l~~lF~-epSTRTR~-SFe~A~~~LGg~~i~l~--~~~ss~   84 (332)
T PRK04284          9 FLTLLDFTPKEIEYLLDLSEDLKRAKYAGIEVQKLKGKNIALIFE-KDSTRTRC-AFEVAAYDQGAHVTYLG--PTGSQM   84 (332)
T ss_pred             ccchHhCCHHHHHHHHHHHHHHHHHhhcCCcccCCCCCEEEEEec-CCChhHHH-HHHHHHHHcCCeEEEcC--CccccC
Confidence            56655565543344444444444321  1     11123333343 34455544 45788999999988653  2222  


Q ss_pred             --HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHH
Q 022295           82 --EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLK  159 (299)
Q Consensus        82 --~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~  159 (299)
                        -|.+.+.++-|+.-  +|+|.+-.|-.  -....+.+..    .   +-.+|.|       .+...||=+.+=+--+.
T Consensus        85 ~kgEsl~DTarvls~y--~D~iviR~~~~--~~~~~~a~~s----~---vPVINa~-------~~~~HPtQaL~Dl~Ti~  146 (332)
T PRK04284         85 GKKESTKDTARVLGGM--YDGIEYRGFSQ--RTVETLAEYS----G---VPVWNGL-------TDEDHPTQVLADFLTAK  146 (332)
T ss_pred             CCCcCHHHHHHHHHHh--CCEEEEecCch--HHHHHHHHhC----C---CCEEECC-------CCCCChHHHHHHHHHHH
Confidence              25677777777764  88999986632  2223332222    2   3455632       23468998888444444


Q ss_pred             hh-CCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCc
Q 022295          160 RS-GVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREAD  212 (299)
Q Consensus       160 ~~-~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~AD  212 (299)
                      ++ ..+++|++|+++|-+ ..|.+.++.+|...|++|++|+-.                         +.++.+.+++||
T Consensus       147 e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aD  226 (332)
T PRK04284        147 EHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSD  226 (332)
T ss_pred             HHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCC
Confidence            44 347999999999974 347999999999999999999733                         246678899999


Q ss_pred             EEEEe
Q 022295          213 IVIAA  217 (299)
Q Consensus       213 IVIsa  217 (299)
                      +|.+-
T Consensus       227 vvy~~  231 (332)
T PRK04284        227 VIYTD  231 (332)
T ss_pred             EEEEC
Confidence            99975

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=96.84  E-value=0.13  Score=49.00  Aligned_cols=147  Identities=16%  Similarity=0.182  Sum_probs=99.6

Q ss_pred             CcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccC
Q 022295           50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDV  126 (299)
Q Consensus        50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDV  126 (299)
                      .|+..... +=..++.++|.++.++. +.+.+   -|.+.+.++-|+.-  +|+|.+-.|-.  -....+.+.    -+ 
T Consensus        47 epSTRTR~-SFE~A~~~LGg~~i~l~-~~~ss~~kgEsl~Dt~~vls~y--~D~iviR~~~~--~~~~~~a~~----~~-  115 (302)
T PRK14805         47 KPSLRTRV-SFDIGINKLGGHCLYLD-QQNGALGKRESVADFAANLSCW--ADAIVARVFSH--STIEQLAEH----GS-  115 (302)
T ss_pred             CCCchHHH-HHHHHHHHcCCcEEECC-CCcCcCCCCcCHHHHHHHHHHh--CCEEEEeCCCh--hHHHHHHHh----CC-
Confidence            45555555 45789999999988765 22221   25577777777664  88999987633  222333222    22 


Q ss_pred             CCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-----
Q 022295          127 DGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-----  200 (299)
Q Consensus       127 Dg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-----  200 (299)
                        +-.+|.|       .+...||=+.+ ++.+.++.| +++|++|+++|-+..|.+.++.+|...|++|++|+-.     
T Consensus       116 --vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g-~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~  185 (302)
T PRK14805        116 --VPVINAL-------CDLYHPCQALADFLTLAEQFG-DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPD  185 (302)
T ss_pred             --CCEEECC-------CCCCChHHHHHHHHHHHHHhC-CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCC
Confidence              3556653       23468998888 444444554 7999999999998888999999999999999999732     


Q ss_pred             --------------------CCChhhhccCCcEEEEec
Q 022295          201 --------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       201 --------------------t~~l~~~~~~ADIVIsa~  218 (299)
                                          +.++ +.++.||+|.+-+
T Consensus       186 ~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~  222 (302)
T PRK14805        186 GQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT  222 (302)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence                                1232 4688899988733

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.83  E-value=0.026  Score=54.38  Aligned_cols=187  Identities=16%  Similarity=0.102  Sum_probs=116.5

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcC--C-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCC--
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKY--G-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV--   80 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~--~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--   80 (299)
                      .+|+-..+.++=.+.|-+...++++..  +     ..-+....++= .|+...-. +=..++.++|.++.+..- .+.  
T Consensus         9 ~~l~~~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~-epSTRTR~-SFe~A~~~LGg~~i~l~~-~~ss~   85 (331)
T PRK02102          9 SFLKLLDFTPEEIEYLIDLSIELKAAKKAGIEHQYLEGKNIALIFE-KTSTRTRC-AFEVAAIDLGAHVTYLGP-NDSQL   85 (331)
T ss_pred             CccchHHCCHHHHHHHHHHHHHHHHHhhcCCCcccCCCCEEEEEeC-CCChhHHH-HHHHHHHHcCCCEEEcCc-ccccC
Confidence            356666666655555555555554321  1     11233333333 33333333 457889999999885532 221  


Q ss_pred             -CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHH
Q 022295           81 -SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLK  159 (299)
Q Consensus        81 -~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~  159 (299)
                       ..|.+.+.++-|..-  +|+|.+-.|-..-+  +.+.+.    -+|   -.+|.|       .+...||=+.+=+-.++
T Consensus        86 ~kgEsl~Dt~rvls~y--~D~iviR~~~~~~~--~~~a~~----~~v---PVINa~-------~~~~HPtQaLaDl~Ti~  147 (331)
T PRK02102         86 GKKESIEDTARVLGRM--YDGIEYRGFKQEIV--EELAKY----SGV---PVWNGL-------TDEWHPTQMLADFMTMK  147 (331)
T ss_pred             CCCcCHHHHHHHHhhc--CCEEEEECCchHHH--HHHHHh----CCC---CEEECC-------CCCCChHHHHHHHHHHH
Confidence             125677777777764  88999987633211  233222    222   345643       23468998888444444


Q ss_pred             hhCCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCcE
Q 022295          160 RSGVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREADI  213 (299)
Q Consensus       160 ~~~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~ADI  213 (299)
                      ++-..++|+++++||-+ ..|.+.++.++...|++|++|+-.                         +.++.+.++.||+
T Consensus       148 e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDv  227 (331)
T PRK02102        148 EHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADV  227 (331)
T ss_pred             HHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCE
Confidence            44457999999999985 347999999999999999999632                         2456788999999


Q ss_pred             EEEe
Q 022295          214 VIAA  217 (299)
Q Consensus       214 VIsa  217 (299)
                      |.+-
T Consensus       228 vyt~  231 (331)
T PRK02102        228 IYTD  231 (331)
T ss_pred             EEEc
Confidence            9974

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.80  E-value=0.0088  Score=59.68  Aligned_cols=53  Identities=26%  Similarity=0.315  Sum_probs=44.2

Q ss_pred             ccccCCHHHHHHHH----HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEE-Ec
Q 022295          145 LFLPCTPKGCLELL----KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTI-VH  198 (299)
Q Consensus       145 ~~~PcT~~av~~ll----~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv-~~  198 (299)
                      +-.+.|++|++..+    ++.|.+|+||+|+|.|.|+ ||..+|..|.+.||+|+. ++
T Consensus       202 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGN-VG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        202 IRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGN-VAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             CCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEC
Confidence            34578999977655    4568999999999999877 699999999999999886 44

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.80  E-value=0.002  Score=60.69  Aligned_cols=73  Identities=25%  Similarity=0.371  Sum_probs=55.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC----------------CChhhhccCCcEEEEecCCCC---cCC-
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT----------------TDPESIVREADIVIAAAGQAM---MIK-  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~---~i~-  225 (299)
                      ++|.|||.|.+ |..++..|...|.  .|++++++.                .+..+.+++||+||.+++...   ++. 
T Consensus         7 ~~I~IIG~G~m-G~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~   85 (307)
T PRK07502          7 DRVALIGIGLI-GSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAE   85 (307)
T ss_pred             cEEEEEeeCHH-HHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence            68999998875 9999999998884  788887642                245567889999999998543   121 


Q ss_pred             -CCccCCCeEEEEeecc
Q 022295          226 -GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       226 -~~~vk~gavVIDvg~~  241 (299)
                       ..+++++.+|+|+|..
T Consensus        86 l~~~l~~~~iv~dvgs~  102 (307)
T PRK07502         86 IAPHLKPGAIVTDVGSV  102 (307)
T ss_pred             HHhhCCCCCEEEeCccc
Confidence             2467899999999863

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.80  E-value=0.0021  Score=62.68  Aligned_cols=76  Identities=20%  Similarity=0.223  Sum_probs=58.3

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCC---CCChhhhccCCcEEEEecCCCC---cCC---C--CccCCCe
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSH---TTDPESIVREADIVIAAAGQAM---MIK---G--SWIKPGA  233 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~---t~~l~~~~~~ADIVIsa~g~p~---~i~---~--~~vk~ga  233 (299)
                      .-.+|+|||-+|.+|..++..|.+. +.+|+.+++.   +.++.+.+++||+||.|++...   ++.   +  .++++|+
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~   82 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQ   82 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCe
Confidence            3468999998455699999999875 6788888653   3456778999999999998543   222   1  2379999


Q ss_pred             EEEEeecc
Q 022295          234 AVIDVGTN  241 (299)
Q Consensus       234 vVIDvg~~  241 (299)
                      +|.|+|..
T Consensus        83 iVtDVgSv   90 (370)
T PRK08818         83 LWLDVTSI   90 (370)
T ss_pred             EEEECCCC
Confidence            99999974

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.79  E-value=0.028  Score=53.42  Aligned_cols=149  Identities=14%  Similarity=0.173  Sum_probs=100.1

Q ss_pred             CcccHHHHHHHHHHHHHcCCceeeecCCCCC---CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccC
Q 022295           50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQV---SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDV  126 (299)
Q Consensus        50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDV  126 (299)
                      .|+-..-. +=..++.++|.++..+.-+.+.   ..|-+.+..+-|+.=  +|+|.+-.|  .|-...++.+..      
T Consensus        48 ~pSTRTR~-SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y--~D~iviR~~--~~~~~~~~a~~s------  116 (301)
T TIGR00670        48 EPSTRTRL-SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGY--SDAIVIRHP--LEGAARLAAEVS------  116 (301)
T ss_pred             cCCchhHh-HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHh--CCEEEEECC--chhHHHHHHhhC------
Confidence            44444333 4578999999988876542222   124566666666653  789999876  333333333332      


Q ss_pred             CCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcCC---
Q 022295          127 DGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHSH---  200 (299)
Q Consensus       127 Dg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~~---  200 (299)
                       .+-.+|.|-      .....||=+.+ ++.+.++.| +++|++|+++|-+  +-|.+.++.++...|++|++|+-.   
T Consensus       117 -~vPVINa~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~  188 (301)
T TIGR00670       117 -EVPVINAGD------GSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELR  188 (301)
T ss_pred             -CCCEEeCCC------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCcccc
Confidence             234556431      13468999988 555555555 7999999999986  457999999999999999999733   


Q ss_pred             ------------------CCChhhhccCCcEEEEe
Q 022295          201 ------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       201 ------------------t~~l~~~~~~ADIVIsa  217 (299)
                                        +.++.+.++.||+|.+-
T Consensus       189 ~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~  223 (301)
T TIGR00670       189 MPKEILEELKAKGIKVRETESLEEVIDEADVLYVT  223 (301)
T ss_pred             CCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence                              24567889999998874

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK13529 malate dehydrogenase; Provisional

Probab=96.77  E-value=0.0078  Score=61.45  Aligned_cols=139  Identities=18%  Similarity=0.259  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhC
Q 022295           83 AELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSG  162 (299)
Q Consensus        83 ~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~  162 (299)
                      +|+.++++++-  |++   ++|.==-+.-+--++++..  .+++-.||          ++..+---+|-.|++..++-.+
T Consensus       228 defv~av~~~~--P~~---~I~~EDf~~~~af~iL~ry--r~~i~~Fn----------DDiQGTaaV~LAgll~A~r~~g  290 (563)
T PRK13529        228 DEFVQAVKRRF--PNA---LLQFEDFAQKNARRILERY--RDEICTFN----------DDIQGTGAVTLAGLLAALKITG  290 (563)
T ss_pred             HHHHHHHHHhC--CCe---EEehhhcCCchHHHHHHHh--ccCCCeec----------cccchHHHHHHHHHHHHHHHhC
Confidence            67888887776  553   5554322222334444443  22333333          2244555667788999999999


Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhh----CCC-------eEEEEcCC--------------------C----------
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLK----ADA-------TVTIVHSH--------------------T----------  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~----~ga-------tVtv~~~~--------------------t----------  201 (299)
                      .+|+..+++++|+|.+ |..+|.+|..    +|.       .+++|+++                    +          
T Consensus       291 ~~l~d~riv~~GAGsA-giGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~  369 (563)
T PRK13529        291 EPLSDQRIVFLGAGSA-GCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEG  369 (563)
T ss_pred             CChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccccccc
Confidence            9999999999999998 9999998876    576       68888754                    0          


Q ss_pred             --CChhhhccCC--cEEEEecCCCCcCCCCccCC------CeEEEEee
Q 022295          202 --TDPESIVREA--DIVIAAAGQAMMIKGSWIKP------GAAVIDVG  239 (299)
Q Consensus       202 --~~l~~~~~~A--DIVIsa~g~p~~i~~~~vk~------gavVIDvg  239 (299)
                        .+|.+.++.+  |++|..++.|+.+++++|+.      .-+|+=++
T Consensus       370 ~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS  417 (563)
T PRK13529        370 DVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLS  417 (563)
T ss_pred             CCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence              2577889998  99999999999999988853      55666665

>PLN02342 ornithine carbamoyltransferase

Probab=96.75  E-value=0.021  Score=55.33  Aligned_cols=187  Identities=14%  Similarity=0.136  Sum_probs=118.2

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcC--CC------CcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCC-C
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKY--GK------VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-V   80 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~--~~------~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~   80 (299)
                      .+|+-..+.++=.+.|-+....+++..  +.      .-+....++- .|....-. +=..++.++|.++.++.-... +
T Consensus        47 ~~lsi~dls~~ei~~ll~~A~~lk~~~~~~~~~~~~L~gk~va~lF~-epSTRTR~-SFE~A~~~LGg~~i~l~~~~ss~  124 (348)
T PLN02342         47 HFLHIDDFDKEEILGLLDRAKEVKALLKSGDRSFQPFKGKSMAMIFT-KPSMRTRV-SFETGFFLLGGHALYLGPDDIQL  124 (348)
T ss_pred             CccchhhCCHHHHHHHHHHHHHHHhhhhcCccccccCCCCEEEEEec-CCCcchHH-HHHHHHHHcCCcEEEeCcccccC
Confidence            356666666554455555555555421  11      1122222332 34444443 457889999999988743211 0


Q ss_pred             -CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHH
Q 022295           81 -SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELL  158 (299)
Q Consensus        81 -~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll  158 (299)
                       ..|.+.+.++-|..-  +|+|.+-.|-...+  ..+.+..       .+-.+|.|       .+...||=+.+ ++.+.
T Consensus       125 ~kGESl~DTarvLs~y--~D~IviR~~~~~~~--~~la~~~-------~vPVINA~-------~~~~HPtQaLaDl~Ti~  186 (348)
T PLN02342        125 GKREETRDIARVLSRY--NDIIMARVFAHQDV--LDLAEYS-------SVPVINGL-------TDYNHPCQIMADALTII  186 (348)
T ss_pred             CCCcCHHHHHHHHHHh--CCEEEEeCCChHHH--HHHHHhC-------CCCEEECC-------CCCCChHHHHHHHHHHH
Confidence             124566777766653  78999987633211  2222221       24456642       23468998888 55555


Q ss_pred             HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------CCChhhhccCCcEEEE
Q 022295          159 KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------TTDPESIVREADIVIA  216 (299)
Q Consensus       159 ~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------t~~l~~~~~~ADIVIs  216 (299)
                      ++.| +++|++|+++|-...|.+.++.+|...|++|++|+-.                      +.++.+.++.||+|.+
T Consensus       187 e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~  265 (348)
T PLN02342        187 EHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYT  265 (348)
T ss_pred             HHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEE
Confidence            5555 7999999999998888999999999999999999622                      2466788999999997


Q ss_pred             e
Q 022295          217 A  217 (299)
Q Consensus       217 a  217 (299)
                      -
T Consensus       266 ~  266 (348)
T PLN02342        266 D  266 (348)
T ss_pred             C
Confidence            6

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.74  E-value=0.043  Score=52.41  Aligned_cols=150  Identities=13%  Similarity=0.128  Sum_probs=97.0

Q ss_pred             CcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccC
Q 022295           50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDV  126 (299)
Q Consensus        50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDV  126 (299)
                      .|+..... +=..++.++|..+..+. +.+++   .|-+.+.++-|+.- .+|+|.+-.|-.  -.-..+.+.++     
T Consensus        54 epSTRTR~-SFe~A~~~LGg~~~~~~-~~~s~~~kgEsl~Dtarvls~y-~~D~iv~R~~~~--~~~~~~a~~~~-----  123 (310)
T PRK13814         54 EPSTRTRN-SFEIAAKRLGAMVLNPN-LKISAISKGETLFDTIKTLEAM-GVYFFIVRHSEN--ETPEQIAKQLS-----  123 (310)
T ss_pred             cCcchhHH-HHHHHHHHhCCeEEECC-CccccCCCCCCHHHHHHHHHHh-CCCEEEEeCCch--hHHHHHHHhCC-----
Confidence            44455544 44778889999877653 22211   14456666655542 357888876532  22233323221     


Q ss_pred             CCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCC--ccchHHHHHHHhhCCC-eEEEEcCC---
Q 022295          127 DGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRS--NIVGLPVSLLLLKADA-TVTIVHSH---  200 (299)
Q Consensus       127 Dg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s--~~vG~pla~lL~~~ga-tVtv~~~~---  200 (299)
                       .+-++|.|.      .+...||=+.+=+--++++-.+++|++++++|-+  +-|.+.++.++...|+ .|++|+-.   
T Consensus       124 -~vPvINag~------g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~  196 (310)
T PRK13814        124 -SGVVINAGD------GNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLL  196 (310)
T ss_pred             -CCCeEECCc------CCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence             235566532      3567899888844444443347999999999985  4569999999999998 89999632   


Q ss_pred             -----------CCChhhhccCCcEEEE
Q 022295          201 -----------TTDPESIVREADIVIA  216 (299)
Q Consensus       201 -----------t~~l~~~~~~ADIVIs  216 (299)
                                 +.++.+.++.||+|.+
T Consensus       197 p~~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        197 PDKVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             cCccccceEEEEcCHHHHhCCCCEEEE
Confidence                       3567789999999986

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.72  E-value=0.0013  Score=61.33  Aligned_cols=72  Identities=28%  Similarity=0.307  Sum_probs=54.3

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------ChhhhccCCcEEEEecCCCCc---CC--CCc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------DPESIVREADIVIAAAGQAMM---IK--GSW  228 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~l~~~~~~ADIVIsa~g~p~~---i~--~~~  228 (299)
                      +|.|||.|.+ |..++..|.+.|..|++++++..               +..+.+++||+||.|++....   +.  ...
T Consensus         2 ~I~IIG~G~m-G~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~   80 (279)
T PRK07417          2 KIGIVGLGLI-GGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA   80 (279)
T ss_pred             eEEEEeecHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence            6899998875 99999999999999999986521               112457899999999984332   21  134


Q ss_pred             cCCCeEEEEeecc
Q 022295          229 IKPGAAVIDVGTN  241 (299)
Q Consensus       229 vk~gavVIDvg~~  241 (299)
                      ++++++|.|+|.-
T Consensus        81 l~~~~ii~d~~Sv   93 (279)
T PRK07417         81 LPPEAIVTDVGSV   93 (279)
T ss_pred             CCCCcEEEeCcch
Confidence            6789999999864

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.71  E-value=0.0024  Score=59.69  Aligned_cols=69  Identities=26%  Similarity=0.325  Sum_probs=54.2

Q ss_pred             EEcCCccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCcEEEEecCCCCc----CC-----CCc
Q 022295          172 VVGRSNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREADIVIAAAGQAMM----IK-----GSW  228 (299)
Q Consensus       172 ViG~s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~ADIVIsa~g~p~~----i~-----~~~  228 (299)
                      +||.|.+ |.+++..|.+.|..|++++++              +.+..+.++++|+||++++.+..    +.     ...
T Consensus         1 ~IGlG~m-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~   79 (288)
T TIGR01692         1 FIGLGNM-GGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK   79 (288)
T ss_pred             CCcccHh-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence            4788775 999999999999999999865              24566789999999999987542    21     134


Q ss_pred             cCCCeEEEEeecc
Q 022295          229 IKPGAAVIDVGTN  241 (299)
Q Consensus       229 vk~gavVIDvg~~  241 (299)
                      +++|.++||.+..
T Consensus        80 ~~~g~~vid~st~   92 (288)
T TIGR01692        80 VAKGSLLIDCSTI   92 (288)
T ss_pred             CCCCCEEEECCCC
Confidence            6789999999854

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.71  E-value=0.0026  Score=61.50  Aligned_cols=73  Identities=27%  Similarity=0.407  Sum_probs=55.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------------CChhhhccCCcEEEEecCCCC---cC--
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------TDPESIVREADIVIAAAGQAM---MI--  224 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------~~l~~~~~~ADIVIsa~g~p~---~i--  224 (299)
                      ++|.|||.|.+ |..++..|.+.|..|.+..+..                  .++.+.+++||+||.|++...   ++  
T Consensus         1 ~~I~iIG~Gli-G~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~   79 (359)
T PRK06545          1 RTVLIVGLGLI-GGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAE   79 (359)
T ss_pred             CeEEEEEeCHH-HHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence            47999998876 9999999999998777775431                  234566789999999998543   22  


Q ss_pred             -CCCccCCCeEEEEeecc
Q 022295          225 -KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       225 -~~~~vk~gavVIDvg~~  241 (299)
                       .+..++++++|.|+|..
T Consensus        80 l~~~~l~~~~ivtDv~Sv   97 (359)
T PRK06545         80 LADLELKPGVIVTDVGSV   97 (359)
T ss_pred             HhhcCCCCCcEEEeCccc
Confidence             22247889999999975

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.70  E-value=0.027  Score=53.56  Aligned_cols=147  Identities=21%  Similarity=0.290  Sum_probs=100.0

Q ss_pred             cccHHHHHHHHHHHHHcCCceeeecCCCCC--CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCC
Q 022295           51 KDSQSYVSMKRKACAEVGIKSFDIDLPEQV--SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG  128 (299)
Q Consensus        51 ~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg  128 (299)
                      |+...-. +=..++.++|.++.++.-....  ..|-+.+.+.-|+.-  +|+|.+-.|-..-+  ..+.+..       .
T Consensus        49 pSTRTR~-SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y--~D~iv~R~~~~~~~--~~~a~~~-------~  116 (304)
T TIGR00658        49 PSTRTRV-SFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRY--VDGIMARVYKHEDV--EELAKYA-------S  116 (304)
T ss_pred             CCcchHH-HHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHh--CCEEEEECCChHHH--HHHHHhC-------C
Confidence            4444433 4578899999998877532111  125577777777764  78999987633222  3333322       2


Q ss_pred             CCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------
Q 022295          129 FHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------  200 (299)
Q Consensus       129 ~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------  200 (299)
                      +-.+|.|       .....||=+.+ ++.+.++.| .++|.+|+++|-..-|.+.++.+|...|+.|++|+-.       
T Consensus       117 vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~  188 (304)
T TIGR00658       117 VPVINGL-------TDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDAD  188 (304)
T ss_pred             CCEEECC-------CCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHH
Confidence            3456653       13468998888 445555555 5999999999986668999999999999999999722       


Q ss_pred             ------------------CCChhhhccCCcEEEEe
Q 022295          201 ------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       201 ------------------t~~l~~~~~~ADIVIsa  217 (299)
                                        +.++.+.+++||+|.+-
T Consensus       189 ~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  223 (304)
T TIGR00658       189 IVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD  223 (304)
T ss_pred             HHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence                              24667899999999974

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=96.69  E-value=0.026  Score=56.19  Aligned_cols=190  Identities=13%  Similarity=0.075  Sum_probs=116.1

Q ss_pred             eeccHHHHHHHHHHHHHHHHHHHhcC--C-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC--
Q 022295           11 IIDGKAVAQTIRSEIAEEVRLLSEKY--G-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS--   81 (299)
Q Consensus        11 il~gk~~a~~i~~~~~~~v~~l~~~~--~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~--   81 (299)
                      +|+-..+.++=.+.|-+....++...  +     ..-+....++ ..|+...-. +=..++.++|..+.++.=+.+++  
T Consensus        90 lLsi~Dls~~ei~~Ll~~A~~lK~~~~~~~~~~~L~GK~v~~lF-~epSTRTR~-SFE~A~~~LGg~~i~l~~~~~ss~~  167 (429)
T PRK11891         90 LLSVDQFSRDSVEALFRVADVMQPIARRQKISRVLEGAVLGNLF-FEASTRTRV-SFGAAFCRLGGSVCDTTGFTFSSMA  167 (429)
T ss_pred             ccchhhCCHHHHHHHHHHHHHHHHhhhcCccccccCCcEEEEEe-ccCCchhHH-HHHHHHHHcCCeEEEeCCccccCCC
Confidence            66666666554555555555554321  1     1112222222 244444444 45788899999988774221211  


Q ss_pred             -HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHH
Q 022295           82 -EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLK  159 (299)
Q Consensus        82 -~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~  159 (299)
                       .|-+.+...-|+.=  +|+|.+-.|-  +-...++.+..       .+-.+|.|-      .+.+.||=+.+ ++.+.+
T Consensus       168 kGESi~DTarvLs~y--~D~IviR~~~--~~~~~e~A~~s-------~vPVINAgd------g~~~HPtQaLaDl~Ti~E  230 (429)
T PRK11891        168 KGESIYDTSRVMSGY--VDALVIRHPE--QGSVAEFARAT-------NLPVINGGD------GPGEHPSQALLDLYTIQR  230 (429)
T ss_pred             CCCCHHHHHHHHHHh--CCEEEEeCCc--hhHHHHHHHhC-------CCCEEECCC------CCCCCcHHHHHHHHHHHH
Confidence             23455666555553  7888888653  32223333322       234556431      24578998888 666666


Q ss_pred             hhCC---CcCCcEEEEEcCC--ccchHHHHHHHhhC-CCeEEEEcCC---------------------CCChhhhccCCc
Q 022295          160 RSGV---TIKGKRAVVVGRS--NIVGLPVSLLLLKA-DATVTIVHSH---------------------TTDPESIVREAD  212 (299)
Q Consensus       160 ~~~~---~l~gk~vvViG~s--~~vG~pla~lL~~~-gatVtv~~~~---------------------t~~l~~~~~~AD  212 (299)
                      +.|.   .++|++|+++|-.  +-|.+.++.+|... |++|++|+-.                     +.++.+.++.||
T Consensus       231 ~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~AD  310 (429)
T PRK11891        231 EFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGAD  310 (429)
T ss_pred             HhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCC
Confidence            6652   4999999999985  44688888887775 9999999632                     356778999999


Q ss_pred             EEEEecC
Q 022295          213 IVIAAAG  219 (299)
Q Consensus       213 IVIsa~g  219 (299)
                      +|.+..+
T Consensus       311 VVYt~~~  317 (429)
T PRK11891        311 VVYATRI  317 (429)
T ss_pred             EEEEcCc
Confidence            9998554

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.66  E-value=0.0037  Score=58.85  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=55.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccC---CcEEEEecCCCCc----CC--
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVRE---ADIVIAAAGQAMM----IK--  225 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~---ADIVIsa~g~p~~----i~--  225 (299)
                      ++.+||.|.+ |.+++..|.+.|.+|++++++.              .+.++..++   +|+||++++.+..    +.  
T Consensus         2 ~Ig~IGlG~m-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i   80 (299)
T PRK12490          2 KLGLIGLGKM-GGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL   80 (299)
T ss_pred             EEEEEcccHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence            5899999886 9999999999999999998752              345565555   6999999987621    21  


Q ss_pred             CCccCCCeEEEEeecc
Q 022295          226 GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       226 ~~~vk~gavVIDvg~~  241 (299)
                      ...+++|.++||++..
T Consensus        81 ~~~l~~g~ivid~st~   96 (299)
T PRK12490         81 YPLLSPGDIVVDGGNS   96 (299)
T ss_pred             hccCCCCCEEEECCCC
Confidence            1346789999999754

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.65  E-value=0.0028  Score=62.64  Aligned_cols=74  Identities=22%  Similarity=0.288  Sum_probs=55.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------Chhhh---------------ccCCcEEEEe
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------DPESI---------------VREADIVIAA  217 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~l~~~---------------~~~ADIVIsa  217 (299)
                      ++|.|||.|. +|.|+|..|++.|.+|+.++++..               .+.+.               ..+||+||.+
T Consensus         4 ~kI~VIGlG~-~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGY-IGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcch-hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            6899999887 599999999999999999986532               22222               2379999999


Q ss_pred             cCCC---------CcCC------CCccCCCeEEEEeeccC
Q 022295          218 AGQA---------MMIK------GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       218 ~g~p---------~~i~------~~~vk~gavVIDvg~~~  242 (299)
                      ++.|         ..+.      ...+++|++||+.++.+
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~  122 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP  122 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence            9987         1121      23468899999877643

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.63  E-value=0.0061  Score=57.37  Aligned_cols=72  Identities=13%  Similarity=0.265  Sum_probs=55.5

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCCCC----cC-CC----
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQAM----MI-KG----  226 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~p~----~i-~~----  226 (299)
                      +|.+||.|.+ |.+++..|.+.|..|++++++.             .+..+..++||+||+++..+.    .+ ..    
T Consensus         2 ~Ig~IGlG~M-G~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          2 KLGFIGLGIM-GTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             eEEEEccCHH-HHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            5899998886 9999999999999999887542             244567889999999998653    12 22    


Q ss_pred             CccCCCeEEEEeecc
Q 022295          227 SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 ~~vk~gavVIDvg~~  241 (299)
                      ..+++|.++||++..
T Consensus        81 ~~~~~g~ivvd~sT~   95 (292)
T PRK15059         81 KASLKGKTIVDMSSI   95 (292)
T ss_pred             ccCCCCCEEEECCCC
Confidence            235789999999854

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.62  E-value=0.0041  Score=52.40  Aligned_cols=54  Identities=22%  Similarity=0.449  Sum_probs=43.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC------------------------CChhhhccCCcEEEEecCCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT------------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t------------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      +|+|||+++.||..++.+|...+.  ++.+++.+.                        .+..+.+++|||||.+.|.|.
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~   81 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPR   81 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccccc
Confidence            799999967789999999998873  688887651                        244588999999999999763

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.61  E-value=0.17  Score=48.22  Aligned_cols=187  Identities=16%  Similarity=0.185  Sum_probs=114.9

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCC-------CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCC-C-
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYG-------KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-V-   80 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~-------~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~-   80 (299)
                      .+|+-+.+.++=.+.|-+....++....       -.-+....++= .|+...- -+=..++.++|.++.++.-... + 
T Consensus         6 ~ll~i~dls~~~l~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~-e~STRTR-~SFe~A~~~LGg~~i~l~~~~ss~~   83 (304)
T PRK00779          6 HFLSLDDLSPEELEELLDLAAELKKKRKAGEPHPPLKGKTLAMIFE-KPSTRTR-VSFEVGMAQLGGHAIFLSPRDTQLG   83 (304)
T ss_pred             cEeehhhCCHHHHHHHHHHHHHHHhHhhcCCccccCCCCEEEEEec-CCCchHH-HHHHHHHHHcCCcEEEECcccccCC
Confidence            4666666655544444444444433211       11222333332 2333333 3558899999999887753211 0 


Q ss_pred             CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHH
Q 022295           81 SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLK  159 (299)
Q Consensus        81 ~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~  159 (299)
                      ..|.+.+.++-|+.-  +|+|.+-.|-..-+  ..+.+.       -.+-.+|.|.       ....||=+.+ ++.+.+
T Consensus        84 kgEsl~Dt~~~l~~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINag~-------~~~HPtQaL~Dl~Ti~e  145 (304)
T PRK00779         84 RGEPIEDTARVLSRY--VDAIMIRTFEHETL--EELAEY-------STVPVINGLT-------DLSHPCQILADLLTIYE  145 (304)
T ss_pred             CCcCHHHHHHHHHHh--CCEEEEcCCChhHH--HHHHHh-------CCCCEEeCCC-------CCCChHHHHHHHHHHHH
Confidence            124577777777663  78888876633211  222222       1245667641       2357988888 444445


Q ss_pred             hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------CCChhhhccCCcEEEEe
Q 022295          160 RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       160 ~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------t~~l~~~~~~ADIVIsa  217 (299)
                      +.| .++|++++++|-..-|.+.++.+|...|++|++|+-.                      +.++.+.+++||+|.+-
T Consensus       146 ~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  224 (304)
T PRK00779        146 HRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD  224 (304)
T ss_pred             HhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            555 6999999999986668999999999999999999632                      24667889999999975

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.58  E-value=0.0019  Score=63.27  Aligned_cols=110  Identities=26%  Similarity=0.341  Sum_probs=75.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC------------------------CChhhhccCCcEEEEecCCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT------------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t------------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      ++|+|||+|+ ||+++|+.|++.+ ..|++..++-                        +.+.+.+++.|+||++.+.+.
T Consensus         2 ~~ilviGaG~-Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~   80 (389)
T COG1748           2 MKILVIGAGG-VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV   80 (389)
T ss_pred             CcEEEECCch-hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence            6899999988 5999999999998 7999998651                        135588999999999987554


Q ss_pred             c--CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCC-CccHHHHHHHHHHHHH
Q 022295          223 M--IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPG-GVGPMTVAMLLRNTLD  291 (299)
Q Consensus       223 ~--i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPG-GVGp~T~a~L~~n~v~  291 (299)
                      -  +=...++-|.-++|+.+.....            -+++..+++++ +|-+|| |+-|=-+..+....++
T Consensus        81 ~~~i~ka~i~~gv~yvDts~~~~~~------------~~~~~~a~~Ag-it~v~~~G~dPGi~nv~a~~a~~  139 (389)
T COG1748          81 DLTILKACIKTGVDYVDTSYYEEPP------------WKLDEEAKKAG-ITAVLGCGFDPGITNVLAAYAAK  139 (389)
T ss_pred             hHHHHHHHHHhCCCEEEcccCCchh------------hhhhHHHHHcC-eEEEcccCcCcchHHHHHHHHHH
Confidence            2  3345678899999998865321            12445666666 344443 4445444455554443

>PLN02527 aspartate carbamoyltransferase

Probab=96.55  E-value=0.16  Score=48.34  Aligned_cols=150  Identities=14%  Similarity=0.176  Sum_probs=99.6

Q ss_pred             CcccHHHHHHHHHHHHHcCCceeeecCCC-CCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCcccc
Q 022295           50 RKDSQSYVSMKRKACAEVGIKSFDIDLPE-QVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKD  125 (299)
Q Consensus        50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~-~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KD  125 (299)
                      .|+-..-. +=..++.++|.++.++.-.. +.+   .|-+.+.++-|+.=  +|+|.+-.|-...  ..++.+..    .
T Consensus        48 epStRTR~-SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y--~D~iviR~~~~~~--~~~~a~~~----~  118 (306)
T PLN02527         48 EPSTRTRL-SFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGY--SDIIVLRHFESGA--ARRAAATA----E  118 (306)
T ss_pred             CCCchhHH-HHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHh--CcEEEEECCChhH--HHHHHHhC----C
Confidence            45444444 45789999999988876531 211   35566777766653  7899998763322  23333222    1


Q ss_pred             CCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC-c-cchHHHHHHHhhC-CCeEEEEcCC-
Q 022295          126 VDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS-N-IVGLPVSLLLLKA-DATVTIVHSH-  200 (299)
Q Consensus       126 VDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s-~-~vG~pla~lL~~~-gatVtv~~~~-  200 (299)
                         +-.+|.|-      .+...||=+.+ ++.+.++.| +++|++|+++|-+ . -|.+.++.+|... |++|++|.-. 
T Consensus       119 ---vPVINa~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~  188 (306)
T PLN02527        119 ---IPVINAGD------GPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDV  188 (306)
T ss_pred             ---CCEEECCC------CCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCc
Confidence               34456431      23468998888 444445555 6999999999975 2 2688888888776 8999998632 


Q ss_pred             --------------------CCChhhhccCCcEEEEec
Q 022295          201 --------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       201 --------------------t~~l~~~~~~ADIVIsa~  218 (299)
                                          +.++.+.++.||+|.+-.
T Consensus       189 ~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~  226 (306)
T PLN02527        189 VKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR  226 (306)
T ss_pred             cCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC
Confidence                                346789999999999843

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=96.53  E-value=0.0052  Score=62.87  Aligned_cols=99  Identities=14%  Similarity=0.204  Sum_probs=80.0

Q ss_pred             CCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhh-----CCC-------eEEEEcCC----------
Q 022295          143 DPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK-----ADA-------TVTIVHSH----------  200 (299)
Q Consensus       143 ~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~-----~ga-------tVtv~~~~----------  200 (299)
                      ..+---+|-.|++..++-.+.+|+..+++++|+|.+ |..+|.+|..     .|.       .+++|+++          
T Consensus       297 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsA-gigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~  375 (581)
T PLN03129        297 IQGTAAVALAGLLAALRATGGDLADQRILFAGAGEA-GTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDS  375 (581)
T ss_pred             cchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHH-HHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCcc
Confidence            344456677889999999999999999999999998 9999988876     355       68888754          


Q ss_pred             --------------CCChhhhccC--CcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295          201 --------------TTDPESIVRE--ADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV  243 (299)
Q Consensus       201 --------------t~~l~~~~~~--ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~  243 (299)
                                    ..+|.+.++.  +|++|.+++.|+.+++++|+      +.-+|+=++ ||.
T Consensus       376 l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS-NPt  439 (581)
T PLN03129        376 LQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS-NPT  439 (581)
T ss_pred             ChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                          1367788888  99999999999999999986      566777766 443

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.51  E-value=0.0049  Score=53.55  Aligned_cols=70  Identities=24%  Similarity=0.353  Sum_probs=48.7

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCC---CCcCC--
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQ---AMMIK--  225 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~---p~~i~--  225 (299)
                      |+||+|.|||.|.- |+.-|+-|.+.|.+|+++.+..              .+..|.++.||+|+..++.   +.+..  
T Consensus         2 l~~k~IAViGyGsQ-G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~   80 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQ-GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEE   80 (165)
T ss_dssp             HCTSEEEEES-SHH-HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHH
T ss_pred             cCCCEEEEECCChH-HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHH
Confidence            58999999999986 9999999999999999998663              3567999999999998873   22221  


Q ss_pred             -CCccCCCeEE
Q 022295          226 -GSWIKPGAAV  235 (299)
Q Consensus       226 -~~~vk~gavV  235 (299)
                       ...+++|+++
T Consensus        81 I~p~l~~G~~L   91 (165)
T PF07991_consen   81 IAPNLKPGATL   91 (165)
T ss_dssp             HHHHS-TT-EE
T ss_pred             HHhhCCCCCEE
Confidence             1247888654

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=96.51  E-value=0.018  Score=58.73  Aligned_cols=140  Identities=18%  Similarity=0.180  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhh
Q 022295           82 EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRS  161 (299)
Q Consensus        82 ~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~  161 (299)
                      -+|+.++++++-  |+   .++|.==...-+.-++++...  +++-.||          ++..+---++-.|++..++-.
T Consensus       229 ~defv~av~~~~--P~---~~Iq~EDf~~~naf~iL~kyr--~~i~~Fn----------DDiQGTaaV~lAgll~Alr~~  291 (559)
T PTZ00317        229 LDEFMEAVSSRW--PN---AVVQFEDFSNNHCFDLLERYQ--NKYRCFN----------DDIQGTGAVIAAGFLNALKLS  291 (559)
T ss_pred             HHHHHHHHHHhC--CC---eEEehhhcCCccHHHHHHHhc--cCCCEec----------ccchhHHHHHHHHHHHHHHHh
Confidence            367777777765  44   355553222223334444432  1222222          224455567788999999999


Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhh----CCC-------eEEEEcCC-----------------------------C
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLK----ADA-------TVTIVHSH-----------------------------T  201 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~----~ga-------tVtv~~~~-----------------------------t  201 (299)
                      +.+|+..++++.|+|.+ |..+|.+|..    +|.       .+++|+++                             .
T Consensus       292 g~~l~d~riv~~GAGsA-giGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~  370 (559)
T PTZ00317        292 GVPPEEQRIVFFGAGSA-AIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSL  370 (559)
T ss_pred             CCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccC
Confidence            99999999999999998 9999998873    666       68888753                             1


Q ss_pred             CChhhhccCC--cEEEEecCCCCcCCCCccC------CCeEEEEee
Q 022295          202 TDPESIVREA--DIVIAAAGQAMMIKGSWIK------PGAAVIDVG  239 (299)
Q Consensus       202 ~~l~~~~~~A--DIVIsa~g~p~~i~~~~vk------~gavVIDvg  239 (299)
                      .+|.+.++.+  |++|.+.+.|+.+++++|+      +.-+|+=++
T Consensus       371 ~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLS  416 (559)
T PTZ00317        371 KTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLS  416 (559)
T ss_pred             CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence            2577888888  9999999999999998885      355666665

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.50  E-value=0.051  Score=52.89  Aligned_cols=157  Identities=17%  Similarity=0.176  Sum_probs=99.2

Q ss_pred             CcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCC---CCCCHHHHHccCC-c
Q 022295           50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLP---KHINEEKVLGEIS-L  122 (299)
Q Consensus        50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp---~~i~~~~i~~~i~-p  122 (299)
                      .|+...-. +=..++.++|.++.++.- .+++   -|-+.+.++-|+.=  +|+|.+-.|-.   .+-.-+.+.+... .
T Consensus        51 epSTRTR~-SFE~A~~~LGg~~i~l~~-~~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~  126 (357)
T TIGR03316        51 DNSTRTRF-SFASAMNLLGLHAQDLDE-GKSQIGHGETVRETAEMISFF--ADGIGIRDDMYIGVGNAYMREVAKYVQEG  126 (357)
T ss_pred             CCCcchHH-HHHHHHHHcCCcEEEeCC-ccccCCCCCCHHHHHHHHHHh--CcEEEEeCCCccccccHHHHHHHHhhhhc
Confidence            44444444 457789999999988863 3322   24566666666653  78999987742   1111122323311 1


Q ss_pred             ccc-C--CCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCC--CcCCcEEEEEcC-------CccchHHHHHHHhh
Q 022295          123 EKD-V--DGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGV--TIKGKRAVVVGR-------SNIVGLPVSLLLLK  189 (299)
Q Consensus       123 ~KD-V--Dg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~--~l~gk~vvViG~-------s~~vG~pla~lL~~  189 (299)
                      -|| |  -.+-.+|.|       .+.+.||=+.+ ++.+.++.|.  .++|++|+++|.       ...|.+.++.++..
T Consensus       127 ~~~~~~~s~vPVINa~-------~~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~  199 (357)
T TIGR03316       127 YKDGVLEQRPPLVNLQ-------CDIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTR  199 (357)
T ss_pred             cccccccCCCCEEECC-------CCCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHH
Confidence            122 0  013345643       23478998888 5555566664  489999999963       33567888888999


Q ss_pred             CCCeEEEEcCC-------------------------CCChhhhccCCcEEEEe
Q 022295          190 ADATVTIVHSH-------------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       190 ~gatVtv~~~~-------------------------t~~l~~~~~~ADIVIsa  217 (299)
                      .|++|++|+-.                         +.++.+.+++||+|.+-
T Consensus       200 ~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  252 (357)
T TIGR03316       200 FGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPK  252 (357)
T ss_pred             cCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            99999999733                         24556888999998865

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.50  E-value=0.0022  Score=52.31  Aligned_cols=75  Identities=24%  Similarity=0.311  Sum_probs=51.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC-Ce-EEEEcCCC---CCh-------------------hhhccCCcEEEEecCCC--C
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD-AT-VTIVHSHT---TDP-------------------ESIVREADIVIAAAGQA--M  222 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g-at-Vtv~~~~t---~~l-------------------~~~~~~ADIVIsa~g~p--~  222 (299)
                      ||.|||++|.+|+-+..+|.++- .+ +.++.++.   +.+                   .+.+.++|+||.|++.-  .
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            68999999999999999999853 34 44443332   111                   13468999999998742  1


Q ss_pred             cCCCCccCCCeEEEEeeccCC
Q 022295          223 MIKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       223 ~i~~~~vk~gavVIDvg~~~~  243 (299)
                      -+-+..+++|..|||.+....
T Consensus        81 ~~~~~~~~~g~~ViD~s~~~R  101 (121)
T PF01118_consen   81 ELAPKLLKAGIKVIDLSGDFR  101 (121)
T ss_dssp             HHHHHHHHTTSEEEESSSTTT
T ss_pred             HHHHHHhhCCcEEEeCCHHHh
Confidence            133344788999999987653

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.48  E-value=0.0048  Score=61.44  Aligned_cols=72  Identities=22%  Similarity=0.349  Sum_probs=54.9

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------CChhhhccCCcEEEEecCCCC---cCC--CCc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------TDPESIVREADIVIAAAGQAM---MIK--GSW  228 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~---~i~--~~~  228 (299)
                      ++.|||..|.+|..++..|.+.|..|+++.++.               .+..+.+.+||+||.+++...   ++.  ..+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~   81 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPH   81 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhh
Confidence            689998434459999999999999999987642               244566889999999998533   221  245


Q ss_pred             cCCCeEEEEeec
Q 022295          229 IKPGAAVIDVGT  240 (299)
Q Consensus       229 vk~gavVIDvg~  240 (299)
                      ++++++|+|++.
T Consensus        82 l~~~~iViDvsS   93 (437)
T PRK08655         82 VKEGSLLMDVTS   93 (437)
T ss_pred             CCCCCEEEEccc
Confidence            789999999996

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.46  E-value=0.0047  Score=57.65  Aligned_cols=71  Identities=17%  Similarity=0.282  Sum_probs=52.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC----eEEEEcCCC---------------CChhhhccCCcEEEEecCCCCcC----
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA----TVTIVHSHT---------------TDPESIVREADIVIAAAGQAMMI----  224 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga----tVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~~i----  224 (299)
                      .++.+||.|.+ |.+++..|.+.|.    +|++++++.               .+..+.+++||+||.++. |..+    
T Consensus         3 ~~IgfIG~G~M-G~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl   80 (272)
T PRK12491          3 KQIGFIGCGNM-GIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI   80 (272)
T ss_pred             CeEEEECccHH-HHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH
Confidence            47999998886 9999999998773    688887541               234456789999999998 4422    


Q ss_pred             C--CCccCCCeEEEEeec
Q 022295          225 K--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       225 ~--~~~vk~gavVIDvg~  240 (299)
                      .  ...++++.+|||+.-
T Consensus        81 ~~l~~~~~~~~lvISi~A   98 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAA   98 (272)
T ss_pred             HHHHHhhcCCcEEEEeCC
Confidence            1  134677889999864

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.44  E-value=0.01  Score=55.15  Aligned_cols=56  Identities=27%  Similarity=0.307  Sum_probs=45.9

Q ss_pred             CccccCCHHHHHHHHH----hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEcCC
Q 022295          144 PLFLPCTPKGCLELLK----RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVHSH  200 (299)
Q Consensus       144 ~~~~PcT~~av~~ll~----~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~~~  200 (299)
                      .+--+.|++|++..++    +.+.+++|++|+|-|.|+ ||..++.+|...|++|+ |++++
T Consensus        11 ~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~e~GakvvaVsD~~   71 (254)
T cd05313          11 LIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGN-VAQYAAEKLLELGAKVVTLSDSK   71 (254)
T ss_pred             CCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCC
Confidence            3446789988776655    568899999999999888 59999999999999877 77643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.43  E-value=0.006  Score=56.72  Aligned_cols=72  Identities=15%  Similarity=0.261  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCC----CeEEEEcCCC----------------CChhhhccCCcEEEEecCCCCc--
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKAD----ATVTIVHSHT----------------TDPESIVREADIVIAAAGQAMM--  223 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~g----atVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~~--  223 (299)
                      ++.++.+||.|.+ |.+++..|.+.|    ..|++++++.                .+..+.+++||+||.++....+  
T Consensus         2 ~~mkI~~IG~G~m-G~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSI-AEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAE   80 (279)
T ss_pred             CCCEEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHH
Confidence            3468999998886 999999999887    5788887642                1334567899999999885432  


Q ss_pred             -CC--CCccCCCeEEEEe
Q 022295          224 -IK--GSWIKPGAAVIDV  238 (299)
Q Consensus       224 -i~--~~~vk~gavVIDv  238 (299)
                       +.  .+.++++.+|||+
T Consensus        81 vl~~l~~~~~~~~liIs~   98 (279)
T PRK07679         81 ALIPFKEYIHNNQLIISL   98 (279)
T ss_pred             HHHHHHhhcCCCCEEEEE
Confidence             21  1346788999997

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=96.38  E-value=0.052  Score=52.41  Aligned_cols=189  Identities=15%  Similarity=0.070  Sum_probs=113.2

Q ss_pred             eeccHHHHHHHHHHHHHHHHHHHhcC--C-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC--
Q 022295           11 IIDGKAVAQTIRSEIAEEVRLLSEKY--G-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS--   81 (299)
Q Consensus        11 il~gk~~a~~i~~~~~~~v~~l~~~~--~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~--   81 (299)
                      +|+-..+.++=.+.|-+...++++..  .     -.-+....++ ..|+-.... +=..++.++|..+.++.=+++++  
T Consensus         8 ~L~~~dls~~el~~ll~~A~~lk~~~~~~~~~~~L~gk~v~~lF-~epSTRTR~-SFe~A~~~LGg~~i~~~~~~~s~~~   85 (338)
T PRK08192          8 ILSVNQLDRDAIQRIFNVADRMEPYALREKRTRVLEGAILGNLF-FEPSTRTRV-SFGCAFNLLGGHVRETTGMASSSLS   85 (338)
T ss_pred             CCchHhCCHHHHHHHHHHHHHHHhhhcccccccccCCCEEEEEE-cCCCcchHH-HHHHHHHHcCCcEEeecCcccccCC
Confidence            56666665544455555555555311  1     1112222223 245555555 44788999999987642222221  


Q ss_pred             -HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHH
Q 022295           82 -EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLK  159 (299)
Q Consensus        82 -~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~  159 (299)
                       .|-+.+.++-|+.=  +|+|.+-.|-...  ..++.+..    .   +-.+|.|-   |   +...||=+.+ ++.+.+
T Consensus        86 kgEsl~Dtarvls~y--~D~IviR~~~~~~--~~~~a~~~----~---vPVINa~~---g---~~~HPtQaLaDl~Ti~e  148 (338)
T PRK08192         86 KGESLYDTARVLSTY--SDVIAMRHPDAGS--VKEFAEGS----R---VPVINGGD---G---SNEHPTQALLDLFTIQK  148 (338)
T ss_pred             CCCCHHHHHHHHHHc--CCEEEEeCCchhH--HHHHHHhC----C---CCEEECCC---C---CCCCcHHHHHHHHHHHH
Confidence             24566666666653  7899998763322  23332221    2   33556431   1   3568998888 555555


Q ss_pred             hh---CCCcCCcEEEEEcCC--ccchHHHHHHHhhC-CCeEEEEcCC---------------------CCChhhhccCCc
Q 022295          160 RS---GVTIKGKRAVVVGRS--NIVGLPVSLLLLKA-DATVTIVHSH---------------------TTDPESIVREAD  212 (299)
Q Consensus       160 ~~---~~~l~gk~vvViG~s--~~vG~pla~lL~~~-gatVtv~~~~---------------------t~~l~~~~~~AD  212 (299)
                      +.   |.+++|++|+++|-+  +-+...++.+|... |+.|++++-.                     +.++.+.+++||
T Consensus       149 ~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aD  228 (338)
T PRK08192        149 ELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKAD  228 (338)
T ss_pred             HhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCC
Confidence            44   357999999999985  34577777766644 8899888632                     246778999999


Q ss_pred             EEEEec
Q 022295          213 IVIAAA  218 (299)
Q Consensus       213 IVIsa~  218 (299)
                      +|.+-.
T Consensus       229 vvyt~~  234 (338)
T PRK08192        229 ILYLTR  234 (338)
T ss_pred             EEEEcC
Confidence            999853

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.37  E-value=0.0062  Score=61.29  Aligned_cols=111  Identities=19%  Similarity=0.229  Sum_probs=66.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChh----------------hhccCCcEEEEecCCCCcCCCCc
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPE----------------SIVREADIVIAAAGQAMMIKGSW  228 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~----------------~~~~~ADIVIsa~g~p~~i~~~~  228 (299)
                      +.|++|+|+|.|.. |++++.+|..+|++|++++.....+.                +.++++|+||.+.|.|.-  ...
T Consensus        10 ~~~~~v~V~G~G~s-G~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~--~p~   86 (488)
T PRK03369         10 LPGAPVLVAGAGVT-GRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPT--APV   86 (488)
T ss_pred             cCCCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCC--CHH
Confidence            36899999999997 99999999999999999985532222                112334444444443310  000


Q ss_pred             cCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhh------hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          229 IKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV------AGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       229 vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~------a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      ++.               -...|-.+.|++++-.....      ...+--|-|-.|.=|+.-|+.++++.+
T Consensus        87 ~~~---------------a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~  142 (488)
T PRK03369         87 LAA---------------AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA  142 (488)
T ss_pred             HHH---------------HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            000               00012257777776311100      001223568899999999999998764

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.36  E-value=0.008  Score=55.72  Aligned_cols=70  Identities=19%  Similarity=0.301  Sum_probs=51.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC---------------CChhhhccCCcEEEEecCCCCc---CC--C
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT---------------TDPESIVREADIVIAAAGQAMM---IK--G  226 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~~---i~--~  226 (299)
                      ++.|||.|.+ |.+++..|.+.|.  +|+.++++.               .+..+. .+||+||.+++....   +.  .
T Consensus         2 ~I~iIG~G~m-G~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aD~Vilavp~~~~~~~~~~l~   79 (275)
T PRK08507          2 KIGIIGLGLM-GGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEEL-KKCDVIFLAIPVDAIIEILPKLL   79 (275)
T ss_pred             EEEEEccCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHH-hcCCEEEEeCcHHHHHHHHHHHh
Confidence            6899998875 9999999998885  688776531               233443 459999999985432   21  1


Q ss_pred             CccCCCeEEEEeecc
Q 022295          227 SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 ~~vk~gavVIDvg~~  241 (299)
                      . ++++++|+|+|..
T Consensus        80 ~-l~~~~iv~d~gs~   93 (275)
T PRK08507         80 D-IKENTTIIDLGST   93 (275)
T ss_pred             c-cCCCCEEEECccc
Confidence            2 7889999999874

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.35  E-value=0.0078  Score=56.62  Aligned_cols=72  Identities=21%  Similarity=0.312  Sum_probs=54.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccC---CcEEEEecCCCCc----CC--
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVRE---ADIVIAAAGQAMM----IK--  225 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~---ADIVIsa~g~p~~----i~--  225 (299)
                      +|.+||.|.+ |.+++..|++.|..|++++++.              .+..+..+.   +|+||+++..+..    +.  
T Consensus         2 ~Ig~IGlG~M-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l   80 (301)
T PRK09599          2 QLGMIGLGRM-GGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL   80 (301)
T ss_pred             EEEEEcccHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence            6899999886 9999999999999999998752              234455554   6999999886532    21  


Q ss_pred             CCccCCCeEEEEeecc
Q 022295          226 GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       226 ~~~vk~gavVIDvg~~  241 (299)
                      .+.+++|.++||.+..
T Consensus        81 ~~~l~~g~ivid~st~   96 (301)
T PRK09599         81 APLLSPGDIVIDGGNS   96 (301)
T ss_pred             HhhCCCCCEEEeCCCC
Confidence            2446788999998754

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.35  E-value=0.0065  Score=59.83  Aligned_cols=122  Identities=19%  Similarity=0.284  Sum_probs=68.6

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh---hhhccCCcEEEEecC-CCCcCCCCccC--CCeEEEEe
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP---ESIVREADIVIAAAG-QAMMIKGSWIK--PGAAVIDV  238 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l---~~~~~~ADIVIsa~g-~p~~i~~~~vk--~gavVIDv  238 (299)
                      ++||+++|+|.|+ .|+++|..|+++|++|+++.++....   .+.+....+-+. .| .+.    +.+.  ...+|.--
T Consensus         3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~-~~~~~~----~~~~~~~d~vV~s~   76 (447)
T PRK02472          3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVI-CGSHPL----ELLDEDFDLMVKNP   76 (447)
T ss_pred             cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEE-eCCCCH----HHhcCcCCEEEECC
Confidence            6799999999999 59999999999999999997653211   122222222111 11 110    1111  23344444


Q ss_pred             eccCCCC---CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          239 GTNAVDD---STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       239 g~~~~~~---~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      |+++...   .-...|-++.++.++....... .+.-|-|-.|.=|+..|+.++++.+
T Consensus        77 gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~-~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         77 GIPYTNPMVEKALEKGIPIITEVELAYLISEA-PIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             CCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCC-CEEEEeCCCchHHHHHHHHHHHHHC
Confidence            4443210   0000122567776653221111 1223668899999999999998754

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.33  E-value=0.0075  Score=59.46  Aligned_cols=37  Identities=32%  Similarity=0.516  Sum_probs=33.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ++++|+|+|+|.|. .|+++|..|+++|+.|+++++..
T Consensus         2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence            46899999999999 69999999999999999998763

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.31  E-value=0.012  Score=56.59  Aligned_cols=74  Identities=22%  Similarity=0.413  Sum_probs=55.5

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhC-C-CeEEEEcCC---------------------CCChhhhccCCcEEEEecCCC-C
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKA-D-ATVTIVHSH---------------------TTDPESIVREADIVIAAAGQA-M  222 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~-g-atVtv~~~~---------------------t~~l~~~~~~ADIVIsa~g~p-~  222 (299)
                      -+...|||.|.- ++.-++.+... + -+|.|..++                     ..+.++.++.|||||++|.+. .
T Consensus       130 a~~laiIGaG~q-A~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~P  208 (330)
T COG2423         130 ASTLAIIGAGAQ-ARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEP  208 (330)
T ss_pred             CcEEEEECCcHH-HHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCC
Confidence            467888887664 77666655543 2 366666543                     246678999999999999954 4


Q ss_pred             cCCCCccCCCeEEEEeecc
Q 022295          223 MIKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       223 ~i~~~~vk~gavVIDvg~~  241 (299)
                      +++.+|++||+.|.=+|.+
T Consensus       209 il~~~~l~~G~hI~aiGad  227 (330)
T COG2423         209 VLKAEWLKPGTHINAIGAD  227 (330)
T ss_pred             eecHhhcCCCcEEEecCCC
Confidence            7899999999999999965

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.29  E-value=0.037  Score=55.34  Aligned_cols=51  Identities=25%  Similarity=0.250  Sum_probs=43.2

Q ss_pred             cccCCHHHHHHHHH----hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE
Q 022295          146 FLPCTPKGCLELLK----RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       146 ~~PcT~~av~~ll~----~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~  197 (299)
                      -.+.|++|+...++    +.+.+++|++|+|.|.|+ ||..+|.+|.+.|++|+.+
T Consensus       207 r~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGn-VG~~~A~~L~~~GakVVav  261 (445)
T PRK09414        207 RTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGN-VAIYAIEKAQQLGAKVVTC  261 (445)
T ss_pred             CCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence            45789988766655    458899999999999988 5999999999999987766

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.28  E-value=0.008  Score=56.08  Aligned_cols=72  Identities=21%  Similarity=0.329  Sum_probs=53.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------------------------------CCChhhhcc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------------------------------TTDPESIVR  209 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------------------------------t~~l~~~~~  209 (299)
                      ++|.|||.|.+ |.++|..|++.|..|++++++                                      +.++.+.++
T Consensus         2 ~~V~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          2 EKLVVVGAGVM-GRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             cEEEEECccHH-HHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            57999998775 999999999999999999753                                      234557789


Q ss_pred             CCcEEEEecCCCCc-----CC--CCccCCCeEE-EEeec
Q 022295          210 EADIVIAAAGQAMM-----IK--GSWIKPGAAV-IDVGT  240 (299)
Q Consensus       210 ~ADIVIsa~g~p~~-----i~--~~~vk~gavV-IDvg~  240 (299)
                      +||+||.+++...-     +.  .+.+++++++ +|.+.
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt  119 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST  119 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence            99999999885431     11  2345777755 56554

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.27  E-value=0.0071  Score=57.45  Aligned_cols=72  Identities=17%  Similarity=0.253  Sum_probs=55.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------CChhhhccCCcEEEEecC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------TDPESIVREADIVIAAAG  219 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------~~l~~~~~~ADIVIsa~g  219 (299)
                      .+|.|||.|.+ |.+++..|++.|..|++.+++.                            .++.+.++++|+||.++.
T Consensus         5 m~I~iIG~G~m-G~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          5 MRVAVLGAGAW-GTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            47999998875 9999999999999999997641                            134466788999999998


Q ss_pred             CCCcCC-CCccCCCeEEEEeec
Q 022295          220 QAMMIK-GSWIKPGAAVIDVGT  240 (299)
Q Consensus       220 ~p~~i~-~~~vk~gavVIDvg~  240 (299)
                      ...+-. -+.++++.++|++..
T Consensus        84 ~~~~~~v~~~l~~~~~vi~~~~  105 (328)
T PRK14618         84 SKALRETLAGLPRALGYVSCAK  105 (328)
T ss_pred             hHHHHHHHHhcCcCCEEEEEee
Confidence            764311 134678899999864

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=96.25  E-value=0.12  Score=50.96  Aligned_cols=196  Identities=15%  Similarity=0.173  Sum_probs=117.4

Q ss_pred             eeccHHHHHHHHHHHHHHHHHHHhcC--CC-----CcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC--
Q 022295           11 IIDGKAVAQTIRSEIAEEVRLLSEKY--GK-----VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS--   81 (299)
Q Consensus        11 il~gk~~a~~i~~~~~~~v~~l~~~~--~~-----~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~--   81 (299)
                      +|+-..+.++=.+.|-+...++++..  +.     ..++++.++= .|+...-. +=..++.++|.++.++.-. +.+  
T Consensus        23 lL~~~dls~~ei~~Ll~~A~~~k~~~~~~~~~~~L~~~~~~~lF~-epSTRTR~-SFE~A~~~LGg~~i~l~~~-~ss~~   99 (395)
T PRK07200         23 FLLTWEKTPDELKAVLDVADALRALREENISTKVFNSGLGISVFR-DNSTRTRF-SYASACNLLGLEVQDLDEG-KSQIA   99 (395)
T ss_pred             cCchhhCCHHHHHHHHHHHHHHHhhhhcCCccccccCCeEEEEEc-CCCchhHH-HHHHHHHHcCCCEEEcCCc-cccCC
Confidence            55655565544444444444444321  11     1233433333 34444444 4578899999998877532 111  


Q ss_pred             -HHHHHHHHHHhcCCCCceEEEEeCCC---CCCCCHHHHHccCCc--cccC-CCCC-cccccccccCCCCCccccCCHHH
Q 022295           82 -EAELISKVHELNVMPDVHGILVQLPL---PKHINEEKVLGEISL--EKDV-DGFH-PLNIGKLAMKGRDPLFLPCTPKG  153 (299)
Q Consensus        82 -~~el~~~i~~ln~d~~v~GIlvq~Pl---p~~i~~~~i~~~i~p--~KDV-Dg~~-~~n~g~l~~g~~~~~~~PcT~~a  153 (299)
                       -|-+.+.++-|+.=  +|+|.+-.|-   ..+-..+++.+...-  .++| -..- .+|.+       .+...||=+.+
T Consensus       100 kGEsl~DTarvLs~y--~D~IviR~~~~~g~~~~~~~ela~~~~~~~~~~~~~~~pPVINa~-------~~~~HPtQaLa  170 (395)
T PRK07200        100 HGETVRETANMISFM--ADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQGVLPQRPTLVNLQ-------CDIDHPTQSMA  170 (395)
T ss_pred             CCCCHHHHHHHHHHh--CCEEEEecCcccccccHHHHHHHHHhhhhcccccccCCCeEEECC-------CCCCCcHHHHH
Confidence             14566677766663  8899999774   222212222222110  1111 1222 35642       23568998888


Q ss_pred             -HHHHHHhhCC--CcCCcEEEEEc-------CCccchHHHHHHHhhCCCeEEEEcCC-----------------------
Q 022295          154 -CLELLKRSGV--TIKGKRAVVVG-------RSNIVGLPVSLLLLKADATVTIVHSH-----------------------  200 (299)
Q Consensus       154 -v~~ll~~~~~--~l~gk~vvViG-------~s~~vG~pla~lL~~~gatVtv~~~~-----------------------  200 (299)
                       ++.+.++.|-  .++|++|+++|       ++..|.+.++.+|...|++|++|+-.                       
T Consensus       171 Dl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i  250 (395)
T PRK07200        171 DLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSF  250 (395)
T ss_pred             HHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeE
Confidence             5666666664  38999999985       45567899999999999999999632                       


Q ss_pred             --CCChhhhccCCcEEEEec
Q 022295          201 --TTDPESIVREADIVIAAA  218 (299)
Q Consensus       201 --t~~l~~~~~~ADIVIsa~  218 (299)
                        +.|+.+.++.||+|.+-+
T Consensus       251 ~~~~d~~eav~~aDvVYtd~  270 (395)
T PRK07200        251 RQVNSMEEAFKDADIVYPKS  270 (395)
T ss_pred             EEEcCHHHHhCCCCEEEEcC
Confidence              246778999999999753

>PLN02688 pyrroline-5-carboxylate reductase

Probab=96.25  E-value=0.0089  Score=54.82  Aligned_cols=68  Identities=13%  Similarity=0.322  Sum_probs=49.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC----eEEEE-cCCC--------------CChhhhccCCcEEEEecCCCCcC----C
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA----TVTIV-HSHT--------------TDPESIVREADIVIAAAGQAMMI----K  225 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga----tVtv~-~~~t--------------~~l~~~~~~ADIVIsa~g~p~~i----~  225 (299)
                      +|.+||.|.+ |.+++..|.+.|.    +|+++ +++.              .+..+.++++|+||.++ .|..+    .
T Consensus         2 kI~~IG~G~m-G~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v-~~~~~~~vl~   79 (266)
T PLN02688          2 RVGFIGAGKM-AEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAV-KPQVVKDVLT   79 (266)
T ss_pred             eEEEECCcHH-HHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEE-CcHHHHHHHH
Confidence            5899998886 9999999999887    88888 6531              24456788999999999 45421    1


Q ss_pred             --CCccCCCeEEEEe
Q 022295          226 --GSWIKPGAAVIDV  238 (299)
Q Consensus       226 --~~~vk~gavVIDv  238 (299)
                        ...++++.+||.+
T Consensus        80 ~l~~~~~~~~~iIs~   94 (266)
T PLN02688         80 ELRPLLSKDKLLVSV   94 (266)
T ss_pred             HHHhhcCCCCEEEEe
Confidence              1345677777765

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.23  E-value=0.011  Score=58.18  Aligned_cols=71  Identities=31%  Similarity=0.477  Sum_probs=54.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------------CChhhhccCCcEE
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------------TDPESIVREADIV  214 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------------~~l~~~~~~ADIV  214 (299)
                      +|.|||.|. +|.++|..|++.|.+|++++++.                                  .+..+.+++||+|
T Consensus         2 kI~vIGlG~-~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         2 KIAVIGLGY-VGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             EEEEECCCc-hhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            689999887 59999999999999999997542                                  1233567889999


Q ss_pred             EEecCCCCc---------CC------CCccCCCeEEEEeec
Q 022295          215 IAAAGQAMM---------IK------GSWIKPGAAVIDVGT  240 (299)
Q Consensus       215 Isa~g~p~~---------i~------~~~vk~gavVIDvg~  240 (299)
                      |.+++.|.-         +.      ...+++|.+|||.+.
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST  121 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST  121 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence            999997731         11      123578999998874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.23  E-value=0.0078  Score=56.47  Aligned_cols=70  Identities=20%  Similarity=0.383  Sum_probs=53.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------CChhhhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      +|.|||.|.+ |.+++..|++.|..|+++++..                            .+..+.++++|+||.++..
T Consensus         3 kI~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          3 KIAVLGAGSW-GTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             EEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            6999998775 9999999999999999997541                            1344567899999999986


Q ss_pred             CCc---CC--CCccCCCeEEEEee
Q 022295          221 AMM---IK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       221 p~~---i~--~~~vk~gavVIDvg  239 (299)
                      ..+   +.  ..+++++++||++.
T Consensus        82 ~~~~~v~~~l~~~~~~~~~vi~~~  105 (325)
T PRK00094         82 QALREVLKQLKPLLPPDAPIVWAT  105 (325)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEEe
Confidence            432   11  13567899999993

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.22  E-value=0.0095  Score=49.63  Aligned_cols=71  Identities=27%  Similarity=0.375  Sum_probs=48.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------CChhhhccCCcEEEEecCCCC-------cC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------TDPESIVREADIVIAAAGQAM-------MI  224 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~-------~i  224 (299)
                      -+|.|||+|. ||..|+.+|.+.|..|.-+.+++                .++.+.+++||++|-+++.-.       +-
T Consensus        11 l~I~iIGaGr-VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~La   89 (127)
T PF10727_consen   11 LKIGIIGAGR-VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQLA   89 (127)
T ss_dssp             -EEEEECTSC-CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred             cEEEEECCCH-HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHHH
Confidence            5899999988 59999999999999988887653                245678999999999998532       22


Q ss_pred             CCCccCCCeEEEEee
Q 022295          225 KGSWIKPGAAVIDVG  239 (299)
Q Consensus       225 ~~~~vk~gavVIDvg  239 (299)
                      ..-.+++|.+|+=..
T Consensus        90 ~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   90 QYGAWRPGQIVVHTS  104 (127)
T ss_dssp             CC--S-TT-EEEES-
T ss_pred             HhccCCCCcEEEECC
Confidence            223467888887654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.20  E-value=0.016  Score=52.74  Aligned_cols=53  Identities=26%  Similarity=0.357  Sum_probs=44.6

Q ss_pred             cccCCHHHHHHHHH----hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEcC
Q 022295          146 FLPCTPKGCLELLK----RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVHS  199 (299)
Q Consensus       146 ~~PcT~~av~~ll~----~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~~  199 (299)
                      ..|.|+.|+...++    +.+.+++|++|+|.|.|. ||+.++.+|.+.|++|+ ++++
T Consensus         6 ~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~-VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076           6 REEATGRGVAYATREALKKLGIGLAGARVAIQGFGN-VGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECC
Confidence            45788888777665    457789999999999877 59999999999999877 8776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.19  E-value=0.035  Score=55.48  Aligned_cols=50  Identities=26%  Similarity=0.296  Sum_probs=42.2

Q ss_pred             cccCCHHHHHHHH----HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEE
Q 022295          146 FLPCTPKGCLELL----KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTI  196 (299)
Q Consensus       146 ~~PcT~~av~~ll----~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv  196 (299)
                      --+.|++|++..+    ++.|.+++|++|+|=|.|+ ||..+|..|.+.||+|+.
T Consensus       203 r~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGn-VG~~aA~~L~e~GakvVa  256 (445)
T PRK14030        203 RPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGN-VAWGAATKATELGAKVVT  256 (445)
T ss_pred             CCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEE
Confidence            3467999876554    5568899999999999877 599999999999998776

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.17  E-value=0.0063  Score=57.27  Aligned_cols=72  Identities=14%  Similarity=0.219  Sum_probs=54.0

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CCh---hhhccCCcEEEEecCCCC---cCC--C
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDP---ESIVREADIVIAAAGQAM---MIK--G  226 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l---~~~~~~ADIVIsa~g~p~---~i~--~  226 (299)
                      +|.|||.|.+ |.+++..|.+.|.+|++.+++.              .++   .+.+.++|+||.+++...   ++.  .
T Consensus         2 ~Ig~IGlG~m-G~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~   80 (298)
T TIGR00872         2 QLGLIGLGRM-GANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA   80 (298)
T ss_pred             EEEEEcchHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence            6899999886 9999999999999999988752              122   234567899999988642   121  1


Q ss_pred             CccCCCeEEEEeecc
Q 022295          227 SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 ~~vk~gavVIDvg~~  241 (299)
                      ..+++|.+|||.+..
T Consensus        81 ~~l~~g~ivid~st~   95 (298)
T TIGR00872        81 PTLEKGDIVIDGGNS   95 (298)
T ss_pred             hhCCCCCEEEECCCC
Confidence            346889999998765

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.17  E-value=0.017  Score=57.40  Aligned_cols=122  Identities=20%  Similarity=0.222  Sum_probs=73.5

Q ss_pred             cCCcEEEEEcCCccchHH-HHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCcc-CCCeEEEEeeccC
Q 022295          165 IKGKRAVVVGRSNIVGLP-VSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWI-KPGAAVIDVGTNA  242 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~p-la~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~v-k~gavVIDvg~~~  242 (299)
                      .++|++.|+|.|+. |+. +|++|.++|++|++++.+.....+.+++..+.+.. |.+    ++.+ ....+|+--|+++
T Consensus         5 ~~~~~v~viG~G~s-G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~-~~~----~~~~~~~d~vv~spgi~~   78 (461)
T PRK00421          5 RRIKRIHFVGIGGI-GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFI-GHD----AENIKDADVVVYSSAIPD   78 (461)
T ss_pred             CCCCEEEEEEEchh-hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeC-CCC----HHHCCCCCEEEECCCCCC
Confidence            46789999999997 999 79999999999999987543222224333433322 221    1112 1244555555554


Q ss_pred             CCCC---ccCCCceeeccCCchh-hhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          243 VDDS---TKKSGYRLVGDVDFHE-ACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       243 ~~~~---~~~~g~kl~GDvdf~~-~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      ....   -...|-++.++.++.. ..+... +--|-|=-|.=|+..|+.++++.+
T Consensus        79 ~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~-~I~ITGTnGKTTTt~ll~~iL~~~  132 (461)
T PRK00421         79 DNPELVAARELGIPVVRRAEMLAELMRFRT-SIAVAGTHGKTTTTSLLAHVLAEA  132 (461)
T ss_pred             CCHHHHHHHHCCCcEEeHHHHHHHHHccCc-EEEEECCCCHHHHHHHHHHHHHhc
Confidence            2110   0001225788888742 221111 223558889999999999998765

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.17  E-value=0.01  Score=57.17  Aligned_cols=70  Identities=21%  Similarity=0.309  Sum_probs=53.6

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC---cCCC-
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM---MIKG-  226 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~---~i~~-  226 (299)
                      ++||+|.|||.|.+ |.++|..|...|..|.+..+..              .+..+.+++||+|+.+++...   ++.. 
T Consensus        15 L~gktIgIIG~Gsm-G~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~   93 (330)
T PRK05479         15 IKGKKVAIIGYGSQ-GHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEE   93 (330)
T ss_pred             hCCCEEEEEeeHHH-HHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHH
Confidence            68999999999886 9999999999999988875431              256678999999999998432   2211 


Q ss_pred             --CccCCCeEE
Q 022295          227 --SWIKPGAAV  235 (299)
Q Consensus       227 --~~vk~gavV  235 (299)
                        ..+++|++|
T Consensus        94 I~~~Lk~g~iL  104 (330)
T PRK05479         94 IEPNLKEGAAL  104 (330)
T ss_pred             HHhcCCCCCEE
Confidence              346778766

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.16  E-value=0.012  Score=55.73  Aligned_cols=54  Identities=22%  Similarity=0.430  Sum_probs=42.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCCC------------------------ChhhhccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHTT------------------------DPESIVREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t~------------------------~l~~~~~~ADIVIsa~g~p  221 (299)
                      ++|.|||.|+ ||..++..|+.+|  .++++++++..                        .-.+.+++||+||.++|.|
T Consensus         1 ~kI~IIGaG~-vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGH-VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence            4799999977 5999999999998  37999976421                        1124578999999999976


Q ss_pred             C
Q 022295          222 M  222 (299)
Q Consensus       222 ~  222 (299)
                      .
T Consensus        80 ~   80 (306)
T cd05291          80 Q   80 (306)
T ss_pred             C
Confidence            3

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.11  E-value=0.0095  Score=54.31  Aligned_cols=60  Identities=10%  Similarity=0.277  Sum_probs=44.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-CCCh-----------------hhhccCCcEEEEecCCCCc
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-TTDP-----------------ESIVREADIVIAAAGQAMM  223 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-t~~l-----------------~~~~~~ADIVIsa~g~p~~  223 (299)
                      ++++|++|+|||.|. |+.-=+..|++.||.|||+... ++++                 .+.+..+++||.||+.+.+
T Consensus        21 l~~~~~~VLVVGGG~-VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~v   98 (223)
T PRK05562         21 LLSNKIKVLIIGGGK-AAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKL   98 (223)
T ss_pred             EECCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHH
Confidence            456799999999777 4766677888899999999533 1111                 1347789999999987653

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=96.07  E-value=0.027  Score=55.57  Aligned_cols=94  Identities=23%  Similarity=0.299  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHhhC--CCcCCcEEEEEcC----------------CccchHHHHHHHhhCCCeEEEEcCCCC--------
Q 022295          149 CTPKGCLELLKRSG--VTIKGKRAVVVGR----------------SNIVGLPVSLLLLKADATVTIVHSHTT--------  202 (299)
Q Consensus       149 cT~~av~~ll~~~~--~~l~gk~vvViG~----------------s~~vG~pla~lL~~~gatVtv~~~~t~--------  202 (299)
                      ..|.-++..+++.-  -+++||+|+|-|+                ||..|+.+|..|..+||+|+++++...        
T Consensus       168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~  247 (399)
T PRK05579        168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVK  247 (399)
T ss_pred             CCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcE
Confidence            34666666665432  4689999999998                776799999999999999999875421        


Q ss_pred             --------Ch----hhhccCCcEEEEecCCCCcCCC----CccCCC--eEEEEeeccC
Q 022295          203 --------DP----ESIVREADIVIAAAGQAMMIKG----SWIKPG--AAVIDVGTNA  242 (299)
Q Consensus       203 --------~l----~~~~~~ADIVIsa~g~p~~i~~----~~vk~g--avVIDvg~~~  242 (299)
                              ++    .+...+.|++|.++|...+-..    .=+|.+  ...+.+--||
T Consensus       248 ~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~~~~~~~Kikk~~~~~~l~L~~~p  305 (399)
T PRK05579        248 RIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGEGELTLELVPNP  305 (399)
T ss_pred             EEccCCHHHHHHHHHHhcCCCCEEEEcccccccccccccccCccCCCCCceEEEEeCc
Confidence                    11    1334578999988886544221    223432  2455655554

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.07  E-value=0.0077  Score=53.08  Aligned_cols=53  Identities=30%  Similarity=0.428  Sum_probs=35.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------------CCChhhhccCCcE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------------TTDPESIVREADI  213 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------------t~~l~~~~~~ADI  213 (299)
                      .+|+|+|.|- ||-|+|..|++.|.+|+-++.+                                  +.+..+.+++||+
T Consensus         1 M~I~ViGlGy-vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv   79 (185)
T PF03721_consen    1 MKIAVIGLGY-VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV   79 (185)
T ss_dssp             -EEEEE--ST-THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred             CEEEEECCCc-chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence            4799999877 5999999999999999999743                                  2345566888898


Q ss_pred             EEEecCCC
Q 022295          214 VIAAAGQA  221 (299)
Q Consensus       214 VIsa~g~p  221 (299)
                      +|.+++.|
T Consensus        80 ~~I~VpTP   87 (185)
T PF03721_consen   80 VFICVPTP   87 (185)
T ss_dssp             EEE----E
T ss_pred             EEEecCCC
Confidence            88888766

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.01  E-value=0.02  Score=55.45  Aligned_cols=112  Identities=26%  Similarity=0.314  Sum_probs=68.7

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhh-CCCe---EEEEcCCC----------C-------ChhhhccCCcEEEEecCCCC--
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLK-ADAT---VTIVHSHT----------T-------DPESIVREADIVIAAAGQAM--  222 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~-~gat---Vtv~~~~t----------~-------~l~~~~~~ADIVIsa~g~p~--  222 (299)
                      ++.+|.|||+++.||+-+..+|.+ .+..   +..+.|..          .       +. +..++.|++|.|+|.--  
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~-~~~~~~Divf~a~~~~~s~   82 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKI-NSFEGVDIAFFSAGGEVSR   82 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCH-HHhcCCCEEEECCChHHHH
Confidence            346899999999999999999994 5555   54454331          0       11 23478999999986421  


Q ss_pred             cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHH
Q 022295          223 MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAML  285 (299)
Q Consensus       223 ~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L  285 (299)
                      -+-+...+.|+.|||.+..+.-++.-+   -.+-.|+-+...+..+ +-..||   -.|++++
T Consensus        83 ~~~~~~~~~G~~VID~Ss~fR~~~~vp---lvvPEvN~e~i~~~~~-iIanPn---C~tt~~~  138 (347)
T PRK06728         83 QFVNQAVSSGAIVIDNTSEYRMAHDVP---LVVPEVNAHTLKEHKG-IIAVPN---CSALQMV  138 (347)
T ss_pred             HHHHHHHHCCCEEEECchhhcCCCCCC---eEeCCcCHHHHhccCC-EEECCC---CHHHHHH
Confidence            122233467999999998765333211   2344455444444223 334664   5566666

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.98  E-value=0.015  Score=57.06  Aligned_cols=76  Identities=21%  Similarity=0.310  Sum_probs=55.5

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCCC---------------C------Chh-hhccCCcEEEEecCCC-
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSHT---------------T------DPE-SIVREADIVIAAAGQA-  221 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~t---------------~------~l~-~~~~~ADIVIsa~g~p-  221 (299)
                      ..++|.|+|++|.+|+-+..+|.++ +.+++...++.               .      ++. +.++++|+||.|+|.- 
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~  116 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT  116 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH
Confidence            4579999999999999999999988 67777765431               0      111 1247799999999852 


Q ss_pred             --CcCCCCccCCCeEEEEeeccCC
Q 022295          222 --MMIKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       222 --~~i~~~~vk~gavVIDvg~~~~  243 (299)
                        ++++. + +.|..|||++..+.
T Consensus       117 s~~i~~~-~-~~g~~VIDlSs~fR  138 (381)
T PLN02968        117 TQEIIKA-L-PKDLKIVDLSADFR  138 (381)
T ss_pred             HHHHHHH-H-hCCCEEEEcCchhc
Confidence              23443 3 57899999997754

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.94  E-value=0.012  Score=52.84  Aligned_cols=69  Identities=25%  Similarity=0.311  Sum_probs=49.4

Q ss_pred             EEEEEc-CCccchHHHHHHHhhCCCeEEEEcCCC-------------------------CChhhhccCCcEEEEecCCCC
Q 022295          169 RAVVVG-RSNIVGLPVSLLLLKADATVTIVHSHT-------------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       169 ~vvViG-~s~~vG~pla~lL~~~gatVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      ++.||| .|. +|..++..|.+.|..|++.+++.                         .+..+.+.++|+||.++....
T Consensus         2 kI~IIGG~G~-mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         2 KIAVLGGTGD-QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             EEEEEcCCCH-HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            689998 555 59999999999999998886542                         123456789999999998654


Q ss_pred             c---CC--CCccCCCeEEEEee
Q 022295          223 M---IK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       223 ~---i~--~~~vk~gavVIDvg  239 (299)
                      +   +.  ...++ +.+|||+.
T Consensus        81 ~~~~l~~l~~~l~-~~vvI~~~  101 (219)
T TIGR01915        81 VLKTLESLRDELS-GKLVISPV  101 (219)
T ss_pred             HHHHHHHHHHhcc-CCEEEEec
Confidence            3   11  12233 47899984

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=95.93  E-value=0.033  Score=52.78  Aligned_cols=139  Identities=24%  Similarity=0.261  Sum_probs=93.4

Q ss_pred             HHHHHHHHcCCceeeecCC-----CCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCccc
Q 022295           59 MKRKACAEVGIKSFDIDLP-----EQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLN  133 (299)
Q Consensus        59 ~k~k~~~~~Gi~~~~~~l~-----~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n  133 (299)
                      +=.-++..+|-+..++.=.     ..-+-+|-...+.++     +|||++--.  +|-    .++.+.-.-.|   -..|
T Consensus        61 SFeva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~-----~D~I~~R~~--~~~----~ve~lA~~s~V---PViN  126 (310)
T COG0078          61 SFEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRM-----VDAIMIRGF--SHE----TLEELAKYSGV---PVIN  126 (310)
T ss_pred             hHHHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhh-----hheEEEecc--cHH----HHHHHHHhCCC---ceEc
Confidence            3466788999998776421     111223444444444     889998654  222    22222111122   2223


Q ss_pred             ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------
Q 022295          134 IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------  200 (299)
Q Consensus       134 ~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------  200 (299)
                            | .++.+.||-..|=+-.++++.-.++|++++=+|-|+.|+..+....+..|..|+++.-.             
T Consensus       127 ------g-LtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~  199 (310)
T COG0078         127 ------G-LTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAK  199 (310)
T ss_pred             ------c-cccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHH
Confidence                  3 36778999999955555555555999999999999999999998888899999998632             


Q ss_pred             ------------CCChhhhccCCcEEEEec
Q 022295          201 ------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       201 ------------t~~l~~~~~~ADIVIsa~  218 (299)
                                  |.|..+.++.||+|.|-+
T Consensus       200 ~~a~~~g~~i~~t~d~~eAv~gADvvyTDv  229 (310)
T COG0078         200 ENAKESGGKITLTEDPEEAVKGADVVYTDV  229 (310)
T ss_pred             HHHHhcCCeEEEecCHHHHhCCCCEEEecC
Confidence                        457889999999999655

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.92  E-value=0.015  Score=49.55  Aligned_cols=52  Identities=29%  Similarity=0.414  Sum_probs=43.5

Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------ChhhhccCCcEEEEecCCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------DPESIVREADIVIAAAGQA  221 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------~l~~~~~~ADIVIsa~g~p  221 (299)
                      |+|+|+++.+|+.++..|+++|.+|+..-|+..                   .+.+.++.+|.||.+.|.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~   71 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP   71 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence            689999999999999999999999999876532                   2447788999999998843

...

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.90  E-value=0.026  Score=54.20  Aligned_cols=94  Identities=19%  Similarity=0.232  Sum_probs=63.7

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---------------------hh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---------------------PE  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---------------------l~  205 (299)
                      ++|.....+..+.+.+..-.|++|+|.|.|. ||..+++++...|++|+++......                     +.
T Consensus       164 l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~  242 (360)
T PLN02586        164 LLCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMK  242 (360)
T ss_pred             hhcchHHHHHHHHHhcccCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHH
Confidence            4555555566666555445799999999865 6999999999999987765432211                     11


Q ss_pred             hhccCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295          206 SIVREADIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 ~~~~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~  241 (299)
                      +.+..+|+||-++|.+..+  --+.+++|..++.+|..
T Consensus       243 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~  280 (360)
T PLN02586        243 AAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLP  280 (360)
T ss_pred             hhcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCC
Confidence            2222479999999876533  23557888888888864

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.89  E-value=0.014  Score=57.06  Aligned_cols=76  Identities=22%  Similarity=0.364  Sum_probs=52.8

Q ss_pred             CcEEEEEcCCccchHHHHHHHhh-C-C-CeEEEEcCCC-----------------------CChhhhccCCcEEEEecCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLK-A-D-ATVTIVHSHT-----------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~-~-g-atVtv~~~~t-----------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      -+++.|||.|.- ++.-+.++.. + + -+|.+.+++.                       .+.++.+++||||+++|+.
T Consensus       155 a~~l~iiG~G~Q-A~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s  233 (379)
T PRK06199        155 SKVVGLLGPGVM-GKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG  233 (379)
T ss_pred             CCEEEEECCcHH-HHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence            367777776664 7666665554 2 2 3666665431                       2466889999999999974


Q ss_pred             C-------CcCCCCccCCCeEEEEeeccCC
Q 022295          221 A-------MMIKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       221 p-------~~i~~~~vk~gavVIDvg~~~~  243 (299)
                      .       .++..+|++||+.|+=+|....
T Consensus       234 ~~~~~s~~Pv~~~~~lkpG~hv~~ig~~el  263 (379)
T PRK06199        234 ETGDPSTYPYVKREWVKPGAFLLMPAACRI  263 (379)
T ss_pred             CCCCCCcCcEecHHHcCCCcEEecCCcccC
Confidence            2       4689999999999987776543

>PRK06949 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.013  Score=52.46  Aligned_cols=38  Identities=29%  Similarity=0.449  Sum_probs=34.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~   42 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRR   42 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45889999999998889999999999999999988764

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.85  E-value=0.047  Score=54.34  Aligned_cols=122  Identities=19%  Similarity=0.196  Sum_probs=65.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-C---hhhhccCCcEEEEecCCCCcCCCCccC-CCeEEEEee
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-D---PESIVREADIVIAAAGQAMMIKGSWIK-PGAAVIDVG  239 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-~---l~~~~~~ADIVIsa~g~p~~i~~~~vk-~gavVIDvg  239 (299)
                      +.+|+|.|+|.|.. |+++|.+|.+.|++|++++.+.. .   ..+.++...+.+..-..+    +++++ ...+|+--|
T Consensus        12 ~~~~~i~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~----~~~~~~~dlVV~Spg   86 (458)
T PRK01710         12 IKNKKVAVVGIGVS-NIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY----LDKLDGFDVIFKTPS   86 (458)
T ss_pred             hcCCeEEEEcccHH-HHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC----hHHhccCCEEEECCC
Confidence            46899999999997 99999999999999999986531 1   111122223222211000    11111 123333333


Q ss_pred             ccCCCCC---ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHH
Q 022295          240 TNAVDDS---TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDG  292 (299)
Q Consensus       240 ~~~~~~~---~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a  292 (299)
                      +++....   -...|-.+.++.++..-.... .+--|-|-.|.=||.-|+.+++..
T Consensus        87 i~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~-~vIaITGTnGKTTT~~ll~~iL~~  141 (458)
T PRK01710         87 MRIDSPELVKAKEEGAYITSEMEEFIKYCPA-KVFGVTGSDGKTTTTTLIYEMLKE  141 (458)
T ss_pred             CCCCchHHHHHHHcCCcEEechHHhhhhcCC-CEEEEECCCCHHHHHHHHHHHHHh
Confidence            3321000   000112455555532110011 122356889999999999998865

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.84  E-value=0.02  Score=51.81  Aligned_cols=48  Identities=19%  Similarity=0.284  Sum_probs=39.2

Q ss_pred             HHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC
Q 022295          153 GCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT  201 (299)
Q Consensus       153 av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t  201 (299)
                      ++.+.+++.+.+++|++|+|.|.|+ ||+.++..|.++|+ .|.+++++.
T Consensus         9 ~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211           9 AMKAAMKHLGDSLEGLTVAVQGLGN-VGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             HHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEEcCCC
Confidence            3445556678899999999999888 59999999999987 677787654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.83  E-value=0.51  Score=45.58  Aligned_cols=191  Identities=16%  Similarity=0.170  Sum_probs=114.2

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCC----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCC-----
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYG----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV-----   80 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~-----   80 (299)
                      .+|+-+.+.++=.+.|-+....++....    ..-.++.+-.  .|+...-. +=..++.++|-++.++.-....     
T Consensus         5 ~ll~i~dl~~~ei~~ll~~A~~~k~~~~~~~L~gk~l~~lF~--epSTRTR~-SFe~A~~~LGg~~i~l~~~~ss~~~e~   81 (335)
T PRK04523          5 HFLNTQDWSRAELDALLTQAAAFKRNKLGSALKGKSIALVFF--NPSLRTRT-SFELGAFQLGGHAVVLQPGKDAWPIEF   81 (335)
T ss_pred             CcCchhhCCHHHHHHHHHHHHHHHhcccCccCCCCEEEEEEc--CCCchhHH-HHHHHHHHcCCeEEEeCcccccchhhc
Confidence            3556666666555556555566654211    1113444332  44444443 4578899999998877543210     


Q ss_pred             ---------CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCC-----HHHHHccCCccccCCCCCcccccccccCCCCCcc
Q 022295           81 ---------SEAELISKVHELNVMPDVHGILVQLPLPKHIN-----EEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLF  146 (299)
Q Consensus        81 ---------~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~-----~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~  146 (299)
                               ..|.+.+.++-|+.-  +|+|.+-.|-. +.+     +...++.+...-+   +-.+|.     +  .. +
T Consensus        82 ~~g~~~~~~kgEsl~Dtarvls~~--~D~iv~R~~~~-g~~~~~~~~~~~~~~~a~~s~---vPVINa-----~--~~-~  147 (335)
T PRK04523         82 ELGAVMDGETEEHIREVARVLSRY--VDLIGVRAFPK-FVDWSKDRQDQVLNSFAKYST---VPVINM-----E--TI-T  147 (335)
T ss_pred             ccccccCCCCCcCHHHHHHHHHHh--CcEEEEeCCcc-ccccccchhHHHHHHHHHhCC---CCEEEC-----C--CC-C
Confidence                     125566676666653  78999887632 110     1122233322222   344564     2  23 7


Q ss_pred             ccCCHHHHHHHH-HhhCCCc-CCcEEEEEcCC------ccchHHHHHHHhhCCCeEEEEcC-C-----------------
Q 022295          147 LPCTPKGCLELL-KRSGVTI-KGKRAVVVGRS------NIVGLPVSLLLLKADATVTIVHS-H-----------------  200 (299)
Q Consensus       147 ~PcT~~av~~ll-~~~~~~l-~gk~vvViG~s------~~vG~pla~lL~~~gatVtv~~~-~-----------------  200 (299)
                      .||=+.+=+-.+ ++.| ++ +|++++|++.|      ..|.+.++.+|...|++|++|+- .                 
T Consensus       148 HPtQaLaDl~Ti~e~~g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~  226 (335)
T PRK04523        148 HPCQELAHALALQEHFG-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAA  226 (335)
T ss_pred             ChHHHHHHHHHHHHHhC-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHH
Confidence            899888844444 4554 57 89999887532      24688889999999999999975 2                 


Q ss_pred             --------CCChhhhccCCcEEEEec
Q 022295          201 --------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       201 --------t~~l~~~~~~ADIVIsa~  218 (299)
                              +.++.+.+++||+|.+-.
T Consensus       227 ~~g~~~~~~~d~~ea~~~aDvvy~~~  252 (335)
T PRK04523        227 ESGGSLTVSHDIDSAYAGADVVYAKS  252 (335)
T ss_pred             HcCCeEEEEcCHHHHhCCCCEEEece
Confidence                    245568899999998643

>PLN02712 arogenate dehydrogenase

Probab=95.81  E-value=0.018  Score=60.40  Aligned_cols=75  Identities=19%  Similarity=0.288  Sum_probs=55.6

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhc-cCCcEEEEecCCCC---cCC--
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIV-READIVIAAAGQAM---MIK--  225 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~-~~ADIVIsa~g~p~---~i~--  225 (299)
                      -+.+++.|||.|.+ |..++..|.+.|.+|++++++.             .++.+.+ .+||+||.+++...   ++.  
T Consensus        50 ~~~~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l  128 (667)
T PLN02712         50 TTQLKIAIIGFGNY-GQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSL  128 (667)
T ss_pred             CCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhh
Confidence            34578999998875 9999999999998998887642             1333434 46999999998422   222  


Q ss_pred             -CCccCCCeEEEEeec
Q 022295          226 -GSWIKPGAAVIDVGT  240 (299)
Q Consensus       226 -~~~vk~gavVIDvg~  240 (299)
                       ...+++|++|+|++.
T Consensus       129 ~~~~l~~g~iVvDv~S  144 (667)
T PLN02712        129 PLQRLKRNTLFVDVLS  144 (667)
T ss_pred             hhhcCCCCeEEEECCC
Confidence             245789999999984

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.80  E-value=0.02  Score=53.42  Aligned_cols=72  Identities=22%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------------------------------------CCChhhhc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------------------------------------TTDPESIV  208 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------------------------------------t~~l~~~~  208 (299)
                      ++|.|||.|.+ |..+|..|++.|..|+++..+                                       +.++.+.+
T Consensus         4 ~kIaViGaG~m-G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVL-GSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            57999998765 999999999999999999643                                       23555678


Q ss_pred             cCCcEEEEecCCCC-----cCC--CCccCCCeEEEEeec
Q 022295          209 READIVIAAAGQAM-----MIK--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       209 ~~ADIVIsa~g~p~-----~i~--~~~vk~gavVIDvg~  240 (299)
                      ++||+||.|++..-     ++.  ...+++++++.+...
T Consensus        83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntS  121 (287)
T PRK08293         83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSS  121 (287)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcc
Confidence            99999999987431     111  134577777766443

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=95.79  E-value=0.019  Score=54.83  Aligned_cols=55  Identities=20%  Similarity=0.309  Sum_probs=44.1

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      |+||++.|||.|.+ |.+++..|.+.|..|++..+..              .+..+.+++||+||.++.-
T Consensus         1 l~~kkIgiIG~G~m-G~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp   69 (314)
T TIGR00465         1 LKGKTVAIIGYGSQ-GHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPD   69 (314)
T ss_pred             CCcCEEEEEeEcHH-HHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCc
Confidence            57999999999886 9999999999998777653221              1345678999999999984

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.78  E-value=0.015  Score=58.79  Aligned_cols=73  Identities=22%  Similarity=0.393  Sum_probs=56.0

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccC---CcEEEEecCCCCcC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVRE---ADIVIAAAGQAMMI  224 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~---ADIVIsa~g~p~~i  224 (299)
                      +|-+||-|.+ |.++|.-|+++|.+|+++|++..                     ++.+.+..   +|+||+.+..+..+
T Consensus         8 ~IG~IGLG~M-G~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          8 RIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CEEEEeeHHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            6899999886 99999999999999999997521                     23344444   99999988866522


Q ss_pred             C------CCccCCCeEEEEeeccC
Q 022295          225 K------GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       225 ~------~~~vk~gavVIDvg~~~  242 (299)
                      +      ...+++|.++||.|...
T Consensus        87 ~~Vi~gl~~~l~~G~iiID~sT~~  110 (493)
T PLN02350         87 DQTIKALSEYMEPGDCIIDGGNEW  110 (493)
T ss_pred             HHHHHHHHhhcCCCCEEEECCCCC
Confidence            1      13468899999999763

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.75  E-value=0.042  Score=55.00  Aligned_cols=125  Identities=22%  Similarity=0.283  Sum_probs=72.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChh--hhccCCcEEEEecCCCCcCCCCccCC-CeEEEEeecc
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPE--SIVREADIVIAAAGQAMMIKGSWIKP-GAAVIDVGTN  241 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~--~~~~~ADIVIsa~g~p~~i~~~~vk~-gavVIDvg~~  241 (299)
                      +.+|+|+|+|-|.. |++++..|.++|+.|++++.+.....  ......+-|=...|.- ..  +|... ..+|..=|++
T Consensus         5 ~~~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~-~~--~~~~~~d~vV~SPGi~   80 (448)
T COG0771           5 FQGKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH-DD--EDLAEFDLVVKSPGIP   80 (448)
T ss_pred             ccCCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCcc-ch--hccccCCEEEECCCCC
Confidence            45899999999998 99999999999999999986543310  0000011111111211 11  22222 4555555555


Q ss_pred             CCCC---CccCCCceeeccCCchhhh-hhhceeccCCCCccHHHHHHHHHHHHHHHH
Q 022295          242 AVDD---STKKSGYRLVGDVDFHEAC-KVAGCVTPVPGGVGPMTVAMLLRNTLDGAK  294 (299)
Q Consensus       242 ~~~~---~~~~~g~kl~GDvdf~~~~-~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~  294 (299)
                      +...   .-...|.++.||++.---. ..+-++ -|-|==|.-|+..|+.++++++-
T Consensus        81 ~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~v-aITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          81 PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIV-AITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEE-EEECCCchHHHHHHHHHHHHhcC
Confidence            4311   0011234789999742211 122222 24577799999999999998764

>PLN02477 glutamate dehydrogenase

Probab=95.74  E-value=0.024  Score=56.17  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=45.1

Q ss_pred             cccCCHHHHHHHH----HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEcCC
Q 022295          146 FLPCTPKGCLELL----KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVHSH  200 (299)
Q Consensus       146 ~~PcT~~av~~ll----~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~~~  200 (299)
                      -.+.|++|+...+    ++++.+++|++|+|.|.|+ ||+.+|.+|.++|++|+ |++++
T Consensus       181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGn-VG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        181 REAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGN-VGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             CCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEECCC
Confidence            3578998876655    4568899999999999888 59999999999999877 77764

>PLN02858 fructose-bisphosphate aldolase

Probab=95.74  E-value=0.014  Score=65.61  Aligned_cols=75  Identities=15%  Similarity=0.204  Sum_probs=60.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCc----C-CC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMM----I-KG  226 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~----i-~~  226 (299)
                      ++++|-+||-|.+ |.|+|..|++.|.+|++.+++.              .+..+..++||+||+.+..+.-    + ..
T Consensus         3 ~~~~IGfIGLG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~   81 (1378)
T PLN02858          3 SAGVVGFVGLDSL-SFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGD   81 (1378)
T ss_pred             CCCeEEEEchhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhch
Confidence            4678999999997 9999999999999999998752              3566888999999999986652    1 11


Q ss_pred             ----CccCCCeEEEEeecc
Q 022295          227 ----SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 ----~~vk~gavVIDvg~~  241 (299)
                          +.+++|.++||.++.
T Consensus        82 ~g~~~~l~~g~iivd~STi  100 (1378)
T PLN02858         82 EGAAKGLQKGAVILIRSTI  100 (1378)
T ss_pred             hhHHhcCCCcCEEEECCCC
Confidence                235789999999865

>PRK06398 aldose dehydrogenase; Validated

Probab=95.73  E-value=0.027  Score=51.07  Aligned_cols=37  Identities=27%  Similarity=0.257  Sum_probs=33.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~   39 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK   39 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            4789999999999889999999999999999887654

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.69  E-value=0.017  Score=58.05  Aligned_cols=72  Identities=17%  Similarity=0.240  Sum_probs=53.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------CChhhhcc---CCcEEEEecCCCCc--
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------TDPESIVR---EADIVIAAAGQAMM--  223 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------~~l~~~~~---~ADIVIsa~g~p~~--  223 (299)
                      ++.|||.|.+ |.++|..|++.|.+|++++++.                    .++++.+.   ++|+||..+..+..  
T Consensus         3 ~IgvIGLG~M-G~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          3 DIGLIGLAVM-GQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             EEEEEeEhHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            6899999886 9999999999999999998652                    23444454   47988876554432  


Q ss_pred             --CC--CCccCCCeEEEEeecc
Q 022295          224 --IK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       224 --i~--~~~vk~gavVIDvg~~  241 (299)
                        +.  ...+++|.+|||.|..
T Consensus        82 ~vi~~l~~~L~~g~iIID~gn~  103 (470)
T PTZ00142         82 ETIDNLLPLLEKGDIIIDGGNE  103 (470)
T ss_pred             HHHHHHHhhCCCCCEEEECCCC
Confidence              21  1347889999999864

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.68  E-value=0.038  Score=53.44  Aligned_cols=78  Identities=21%  Similarity=0.298  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCC-C--------------CChh-hhccCCcEEEEecCCCC--cC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSH-T--------------TDPE-SIVREADIVIAAAGQAM--MI  224 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~-t--------------~~l~-~~~~~ADIVIsa~g~p~--~i  224 (299)
                      ...+|.|+|+++.+|+-+..+|.+++.   ++....+. +              .++. +.+.++|+||.|+|.--  -+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~   85 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF   85 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence            457899999999999999999998653   34333222 1              0111 34578999999987431  11


Q ss_pred             CCCccCCCeEEEEeeccCC
Q 022295          225 KGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       225 ~~~~vk~gavVIDvg~~~~  243 (299)
                      -+...+.|+.|||.+..+.
T Consensus        86 ~~~~~~~g~~VIDlS~~fR  104 (344)
T PLN02383         86 GPIAVDKGAVVVDNSSAFR  104 (344)
T ss_pred             HHHHHhCCCEEEECCchhh
Confidence            1233467999999997653

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.61  E-value=0.032  Score=53.21  Aligned_cols=56  Identities=23%  Similarity=0.388  Sum_probs=43.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCCC-----------------------ChhhhccCCcEEEEecCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHTT-----------------------DPESIVREADIVIAAAGQ  220 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t~-----------------------~l~~~~~~ADIVIsa~g~  220 (299)
                      ++++|.|||+|. ||..+|..|+..+.  .+.+++.+..                       +-.+.+++|||||.+.|.
T Consensus         5 ~~~ki~iiGaG~-vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~   83 (315)
T PRK00066          5 QHNKVVLVGDGA-VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA   83 (315)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence            578999999966 69999999998885  5787775311                       113568999999999997


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        84 ~~   85 (315)
T PRK00066         84 PQ   85 (315)
T ss_pred             CC
Confidence            53

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.58  E-value=0.036  Score=52.86  Aligned_cols=56  Identities=25%  Similarity=0.490  Sum_probs=43.8

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCC--------------------------CCChhhhccCCcEEEEe
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSH--------------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~--------------------------t~~l~~~~~~ADIVIsa  217 (299)
                      .+.++|+|||+|. ||..++.+|+..| +++.+++.+                          +.++ +.+++||+||.+
T Consensus         3 ~~~~KI~IIGaG~-vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVit   80 (319)
T PTZ00117          3 VKRKKISMIGAGQ-IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVIT   80 (319)
T ss_pred             CCCcEEEEECCCH-HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEEC
Confidence            4678999999866 6999999999888 688888642                          1244 478999999999


Q ss_pred             cCCCC
Q 022295          218 AGQAM  222 (299)
Q Consensus       218 ~g~p~  222 (299)
                      .|.|.
T Consensus        81 ag~~~   85 (319)
T PTZ00117         81 AGVQR   85 (319)
T ss_pred             CCCCC
Confidence            97643

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.58  E-value=0.025  Score=56.50  Aligned_cols=121  Identities=14%  Similarity=0.130  Sum_probs=68.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCcc-CCCeEEEEeeccCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWI-KPGAAVIDVGTNAVD  244 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~v-k~gavVIDvg~~~~~  244 (299)
                      .||+|+|+|.|.. |++++.+|. +|+.|++.+.+.....+.-..-+..+  .|. +  +.+.+ ....+|+--|+++..
T Consensus         5 ~~~~v~v~G~G~s-G~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~d~vV~SPgI~~~~   77 (454)
T PRK01368          5 TKQKIGVFGLGKT-GISVYEELQ-NKYDVIVYDDLKANRDIFEELYSKNA--IAA-L--SDSRWQNLDKIVLSPGIPLTH   77 (454)
T ss_pred             CCCEEEEEeecHH-HHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcCce--ecc-C--ChhHhhCCCEEEECCCCCCCC
Confidence            5899999999997 999999998 59999999855433221100001111  111 0  00111 123455555555421


Q ss_pred             CC---ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          245 DS---TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       245 ~~---~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      ..   -...|-++.+++++-........+--|-|--|.=||.-|+.++++.+
T Consensus        78 p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             HHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            00   00112358888887421111111223668899999999999998764

>PRK07680 late competence protein ComER; Validated

Probab=95.57  E-value=0.02  Score=53.02  Aligned_cols=70  Identities=13%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC----eEEEEcCCC----------------CChhhhccCCcEEEEecCCCCc----C
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA----TVTIVHSHT----------------TDPESIVREADIVIAAAGQAMM----I  224 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga----tVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~~----i  224 (299)
                      ++.|||.|.+ |..++..|.+.|.    .|++++++.                .+..+.+.++|+||.++. |..    +
T Consensus         2 ~I~iIG~G~m-G~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl   79 (273)
T PRK07680          2 NIGFIGTGNM-GTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL   79 (273)
T ss_pred             EEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence            5899998775 9999999998873    688887642                244466789999999984 331    2


Q ss_pred             C--CCccCCCeEEEEeec
Q 022295          225 K--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       225 ~--~~~vk~gavVIDvg~  240 (299)
                      .  ...++++.+||++.-
T Consensus        80 ~~l~~~l~~~~~iis~~a   97 (273)
T PRK07680         80 QKLAPHLTDEHCLVSITS   97 (273)
T ss_pred             HHHHhhcCCCCEEEEECC
Confidence            1  134667889999873

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.54  E-value=0.019  Score=51.92  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++|++++|.|+++.+|+.++..|+++|++|+++.++
T Consensus         2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~   38 (263)
T PRK09072          2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRN   38 (263)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999999989999999999999999998765

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.52  E-value=0.026  Score=49.39  Aligned_cols=49  Identities=35%  Similarity=0.502  Sum_probs=38.0

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------------------------------CCChhhhccC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------------------------------TTDPESIVRE  210 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------------------------------t~~l~~~~~~  210 (299)
                      +|.|||+|.+ |+.+|.+++..|..|++++.+                                      +.++.+.. +
T Consensus         1 ~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTM-GRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHH-HHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHH-HHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            6899998775 999999999999999999754                                      24566666 9


Q ss_pred             CcEEEEecC
Q 022295          211 ADIVIAAAG  219 (299)
Q Consensus       211 ADIVIsa~g  219 (299)
                      ||+||=++.
T Consensus        79 adlViEai~   87 (180)
T PF02737_consen   79 ADLVIEAIP   87 (180)
T ss_dssp             ESEEEE-S-
T ss_pred             hheehhhcc
Confidence            999998875

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.50  E-value=0.027  Score=51.39  Aligned_cols=37  Identities=24%  Similarity=0.282  Sum_probs=32.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||+++|.|+|+-+|+.++..|+++|++|+++.++
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~   47 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHS   47 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999999889999999999999999887654

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.48  E-value=0.031  Score=49.46  Aligned_cols=57  Identities=26%  Similarity=0.320  Sum_probs=43.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------Ch----h---hhccCCcEEEEecCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------DP----E---SIVREADIVIAAAGQ  220 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------~l----~---~~~~~ADIVIsa~g~  220 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++..            |+    .   +.....|+||..+|.
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~   77 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI   77 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence            478999999999999999999999999999988876421            11    1   123456888877774

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.43  E-value=0.014  Score=55.97  Aligned_cols=76  Identities=24%  Similarity=0.263  Sum_probs=51.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCCC---------------CChh-hhccCCcEEEEecCCCC--cCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSHT---------------TDPE-SIVREADIVIAAAGQAM--MIK  225 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~t---------------~~l~-~~~~~ADIVIsa~g~p~--~i~  225 (299)
                      +.+|.|+|+++.+|+-+..+|.+++.   ++....+..               .++. ..+..+|+||.|+|.-.  -+-
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~   80 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA   80 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence            46899999999999999999998764   334443321               0111 22468999999987421  122


Q ss_pred             CCccCCCeEEEEeeccC
Q 022295          226 GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       226 ~~~vk~gavVIDvg~~~  242 (299)
                      +..++.|++|||.+..+
T Consensus        81 ~~~~~~G~~VIDlS~~~   97 (334)
T PRK14874         81 PKAAAAGAVVIDNSSAF   97 (334)
T ss_pred             HHHHhCCCEEEECCchh
Confidence            23456789999998764

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.41  E-value=0.027  Score=52.90  Aligned_cols=53  Identities=19%  Similarity=0.354  Sum_probs=42.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------------------------------CCChhhhccCCcEE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------------------------------TTDPESIVREADIV  214 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------------------------------t~~l~~~~~~ADIV  214 (299)
                      ++|.|||.|.+ |.++|..|++.|..|++++++                                 +.++.+.+++||+|
T Consensus         5 ~~I~vIGaG~m-G~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV   83 (311)
T PRK06130          5 QNLAIIGAGTM-GSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV   83 (311)
T ss_pred             cEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence            68999998775 999999999999999999742                                 22344567899999


Q ss_pred             EEecCCC
Q 022295          215 IAAAGQA  221 (299)
Q Consensus       215 Isa~g~p  221 (299)
                      |.++...
T Consensus        84 i~av~~~   90 (311)
T PRK06130         84 IEAVPEK   90 (311)
T ss_pred             EEeccCc
Confidence            9998743

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.022  Score=50.08  Aligned_cols=38  Identities=18%  Similarity=0.290  Sum_probs=34.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .++||+++|.|+++.+|+.++..|+++|++|.++.++.
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~   41 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA   41 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence            36799999999999999999999999999999887754

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.36  E-value=0.018  Score=51.76  Aligned_cols=39  Identities=15%  Similarity=0.306  Sum_probs=35.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      +++||+++|.|+|.-+|+.++..|+++|++|.++.++..
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            478999999999999999999999999999999876543

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.36  E-value=0.016  Score=52.07  Aligned_cols=37  Identities=30%  Similarity=0.418  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.+.+++
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~   43 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD   43 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence            5789999999999989999999999999999988765

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.35  E-value=0.022  Score=56.96  Aligned_cols=60  Identities=23%  Similarity=0.310  Sum_probs=45.2

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-CCCh-----------------hhhccCCcEEEEecCCCCc
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-TTDP-----------------ESIVREADIVIAAAGQAMM  223 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-t~~l-----------------~~~~~~ADIVIsa~g~p~~  223 (299)
                      ++++||+|+|||.|. |+.-=+..|++.||.|||+... ++++                 .+.+..+++||.||+.+.+
T Consensus         8 ~~l~~~~vlvvGgG~-vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~   85 (457)
T PRK10637          8 CQLRDRDCLLVGGGD-VAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAV   85 (457)
T ss_pred             EEcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHH
Confidence            578999999999777 4766667788899999998432 1111                 2457789999999987653

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.33  E-value=0.026  Score=51.72  Aligned_cols=71  Identities=21%  Similarity=0.368  Sum_probs=49.5

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC---eEEEEcCC----------------CCChhhhccCCcEEEEecCCCC---cCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSH----------------TTDPESIVREADIVIAAAGQAM---MIKG  226 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~----------------t~~l~~~~~~ADIVIsa~g~p~---~i~~  226 (299)
                      ++.|||.|.+ |.+++..|.+.|.   .+.+++++                +.+..+.++++|+||.++....   ++..
T Consensus         2 ~IgiIG~G~m-G~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~   80 (258)
T PRK06476          2 KIGFIGTGAI-TEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA   80 (258)
T ss_pred             eEEEECcCHH-HHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence            5889998885 9999999988774   24666643                1244566789999999998322   2222


Q ss_pred             CccCCCeEEEEeec
Q 022295          227 SWIKPGAAVIDVGT  240 (299)
Q Consensus       227 ~~vk~gavVIDvg~  240 (299)
                      -++++|.+||++.-
T Consensus        81 l~~~~~~~vis~~a   94 (258)
T PRK06476         81 LRFRPGQTVISVIA   94 (258)
T ss_pred             hccCCCCEEEEECC
Confidence            24578888888764

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.32  E-value=0.032  Score=55.88  Aligned_cols=125  Identities=15%  Similarity=0.213  Sum_probs=71.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccC-CCeEEEEeeccC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIK-PGAAVIDVGTNA  242 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk-~gavVIDvg~~~  242 (299)
                      .+.+|+|+|+|.|++ |++++.+|.++|+.|++++++.....+.+.+..+.+..-+.+    .+++. ...+|+--|+++
T Consensus        12 ~~~~~~v~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~----~~~~~~~d~vV~Spgi~~   86 (473)
T PRK00141         12 QELSGRVLVAGAGVS-GRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEA----SDQLDSFSLVVTSPGWRP   86 (473)
T ss_pred             cccCCeEEEEccCHH-HHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCc----hhHhcCCCEEEeCCCCCC
Confidence            467899999999997 999999999999999999865322222222222222111111    11221 234555555543


Q ss_pred             CCCC---ccCCCceeeccCCchhhhh------hhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          243 VDDS---TKKSGYRLVGDVDFHEACK------VAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       243 ~~~~---~~~~g~kl~GDvdf~~~~~------~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      ....   -...|-++.|+.++.....      ....+--|-|-.|.=|+.-|+.++++..
T Consensus        87 ~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         87 DSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             CCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            2110   0011235777777521110      0111223568889999999999988753

>PLN02858 fructose-bisphosphate aldolase

Probab=95.31  E-value=0.023  Score=64.08  Aligned_cols=74  Identities=19%  Similarity=0.318  Sum_probs=58.9

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCc----C-CC-
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMM----I-KG-  226 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~----i-~~-  226 (299)
                      .++|.+||-|.+ |.++|..|++.|.+|++++++.              .+..+.++++|+||++++.|.-    + .. 
T Consensus       324 ~~~IGfIGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        324 VKRIGFIGLGAM-GFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCeEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            378999999886 9999999999999999998652              3556788999999999996652    2 11 


Q ss_pred             ---CccCCCeEEEEeecc
Q 022295          227 ---SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 ---~~vk~gavVIDvg~~  241 (299)
                         +.+++|.++||.++.
T Consensus       403 g~~~~l~~g~ivVd~STv  420 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTV  420 (1378)
T ss_pred             hHHhcCCCCCEEEECCCC
Confidence               235789999998863

>PRK06523 short chain dehydrogenase; Provisional

Probab=95.30  E-value=0.04  Score=49.57  Aligned_cols=38  Identities=32%  Similarity=0.435  Sum_probs=34.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~   42 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARS   42 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999888754

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.29  E-value=0.048  Score=50.24  Aligned_cols=93  Identities=20%  Similarity=0.331  Sum_probs=63.1

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCC-----------------CChh---
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHT-----------------TDPE---  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t-----------------~~l~---  205 (299)
                      ++|....++..+++.+. ..|++|+|+|.|. +|..+++++...|++ |+++.+..                 .+..   
T Consensus       102 l~~~~~ta~~al~~~~~-~~g~~VlV~G~G~-vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~  179 (280)
T TIGR03366       102 AGCATATVMAALEAAGD-LKGRRVLVVGAGM-LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQ  179 (280)
T ss_pred             hhhHHHHHHHHHHhccC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHH
Confidence            44544445555655554 3899999999865 699999999999986 77664321                 1111   


Q ss_pred             -hhc--cCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295          206 -SIV--READIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 -~~~--~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~  241 (299)
                       +.+  +.+|++|-++|.+..+  --++++++..++.+|..
T Consensus       180 ~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       180 GGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             HHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccC
Confidence             111  2489999999977643  23568898899999953

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.28  E-value=0.025  Score=51.34  Aligned_cols=52  Identities=23%  Similarity=0.420  Sum_probs=42.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------------Chhhh-ccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------------DPESI-VREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------------~l~~~-~~~ADIVIsa~g~  220 (299)
                      ++++|+|.|.+ |.++|..|.++|..|++...+..                       -|+++ +.+||++|.+||.
T Consensus         1 m~iiIiG~G~v-G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGAGRV-GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             CEEEEECCcHH-HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence            57999999885 99999999999999999975421                       13444 7889999999986

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=95.28  E-value=0.039  Score=50.86  Aligned_cols=53  Identities=26%  Similarity=0.409  Sum_probs=41.6

Q ss_pred             EEEEcCCccchHHHHHHHhhCC----CeEEEEcCC-------------------------CCChhhhccCCcEEEEecCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKAD----ATVTIVHSH-------------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~g----atVtv~~~~-------------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      ++|||+|+.+|..++..|+..+    .++++.+.+                         +.++.+.+++||+||.++|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            5799996678999999988888    578877632                         23556889999999999887


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        81 ~~   82 (263)
T cd00650          81 GR   82 (263)
T ss_pred             CC
Confidence            54

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.24  E-value=0.019  Score=51.50  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=35.2

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ..++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~   45 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA   45 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            458899999999999999999999999999999987653

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.22  E-value=0.015  Score=52.62  Aligned_cols=34  Identities=29%  Similarity=0.511  Sum_probs=29.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~  198 (299)
                      .|+.++|+|+|.|++ |..++..|...|. ++++++
T Consensus        18 ~L~~~~VlivG~Ggl-Gs~va~~La~~Gvg~i~lvD   52 (228)
T cd00757          18 KLKNARVLVVGAGGL-GSPAAEYLAAAGVGKLGLVD   52 (228)
T ss_pred             HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEc
Confidence            467899999999995 9999999999996 788884

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.18  E-value=0.03  Score=49.90  Aligned_cols=35  Identities=26%  Similarity=0.523  Sum_probs=30.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~  199 (299)
                      .|++++|+|+|.|++ |..++..|...|. ++++++.
T Consensus        18 kl~~~~VlviG~Ggl-Gs~ia~~La~~Gv~~i~lvD~   53 (202)
T TIGR02356        18 RLLNSHVLIIGAGGL-GSPAALYLAGAGVGTIVIVDD   53 (202)
T ss_pred             HhcCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEecC
Confidence            468899999999995 9999999999996 8888863

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=95.18  E-value=0.031  Score=53.65  Aligned_cols=63  Identities=11%  Similarity=0.147  Sum_probs=45.4

Q ss_pred             hHHHHHHHhhCCCeEEEEcCC-------------------CCChhhhccCCcEEEEecCCCCcC----C--CCccCCCeE
Q 022295          180 GLPVSLLLLKADATVTIVHSH-------------------TTDPESIVREADIVIAAAGQAMMI----K--GSWIKPGAA  234 (299)
Q Consensus       180 G~pla~lL~~~gatVtv~~~~-------------------t~~l~~~~~~ADIVIsa~g~p~~i----~--~~~vk~gav  234 (299)
                      |.|+|..|++.|.+|++++++                   ..+..+.+++||+||+.++.+.-+    .  .+.+++|++
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaI  111 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAV  111 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCE
Confidence            667777777777777777542                   124668899999999999976532    2  245789999


Q ss_pred             EEEeeccC
Q 022295          235 VIDVGTNA  242 (299)
Q Consensus       235 VIDvg~~~  242 (299)
                      |||.++..
T Consensus       112 VID~STIs  119 (341)
T TIGR01724       112 ICNTCTVS  119 (341)
T ss_pred             EEECCCCC
Confidence            99998753

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=95.15  E-value=0.042  Score=54.35  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=35.3

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ...++||+++|.|+|+-+|+.++..|.++|++|.++.++.
T Consensus       173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~  212 (406)
T PRK07424        173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS  212 (406)
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3467899999999999999999999999999999887653

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.13  E-value=0.018  Score=57.82  Aligned_cols=72  Identities=17%  Similarity=0.266  Sum_probs=52.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------Chhhh---ccCCcEEEEecCCCC----
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------DPESI---VREADIVIAAAGQAM----  222 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------~l~~~---~~~ADIVIsa~g~p~----  222 (299)
                      ++.+||-|.+ |.++|..|++.|.+|++.+++..                   ++++.   ++++|+||..+..+.    
T Consensus         1 ~IG~IGLG~M-G~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~   79 (467)
T TIGR00873         1 DIGVIGLAVM-GSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA   79 (467)
T ss_pred             CEEEEeeHHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence            3689998886 99999999999999999986521                   22232   346899998876543    


Q ss_pred             cCC--CCccCCCeEEEEeecc
Q 022295          223 MIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       223 ~i~--~~~vk~gavVIDvg~~  241 (299)
                      ++.  ...+++|.+|||.|..
T Consensus        80 Vi~~l~~~L~~g~iIID~gns  100 (467)
T TIGR00873        80 VINQLLPLLEKGDIIIDGGNS  100 (467)
T ss_pred             HHHHHHhhCCCCCEEEECCCc
Confidence            221  1357889999999953

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.12  E-value=0.037  Score=49.38  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~  199 (299)
                      .|+.++|+|+|.|++ |..+|..|+..|. ++++++.
T Consensus        18 ~L~~~~V~IvG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   53 (200)
T TIGR02354        18 KLEQATVAICGLGGL-GSNVAINLARAGIGKLILVDF   53 (200)
T ss_pred             HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEECC
Confidence            467899999999996 9999999999997 7999864

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.10  E-value=0.024  Score=50.98  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~   42 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDIT   42 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence            4789999999999999999999999999999998765

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.021  Score=52.06  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=34.2

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~   41 (263)
T PRK08339          4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRN   41 (263)
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998888999999999999999998764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.08  E-value=0.045  Score=51.94  Aligned_cols=69  Identities=30%  Similarity=0.445  Sum_probs=51.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------------------------CChhhhccCCcEEEEe
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------------------TDPESIVREADIVIAA  217 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------------------~~l~~~~~~ADIVIsa  217 (299)
                      .+|+|||.|.+ |.++|..|.+.|.+|+++.+..                              .+. +.+..+|+||.+
T Consensus         3 mkI~IiG~G~m-G~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSI-GCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHH-HHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            47999998775 9999999999999999987531                              112 346789999999


Q ss_pred             cCCCCc---CC--CCccCCCeEEEEe
Q 022295          218 AGQAMM---IK--GSWIKPGAAVIDV  238 (299)
Q Consensus       218 ~g~p~~---i~--~~~vk~gavVIDv  238 (299)
                      +..+..   +.  ...++++.+|+++
T Consensus        81 vk~~~~~~~~~~l~~~~~~~~iii~~  106 (341)
T PRK08229         81 VKSAATADAAAALAGHARPGAVVVSF  106 (341)
T ss_pred             ecCcchHHHHHHHHhhCCCCCEEEEe
Confidence            976653   11  1245778888887

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.07  E-value=0.039  Score=51.45  Aligned_cols=39  Identities=28%  Similarity=0.378  Sum_probs=34.7

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ...++||+++|.|+++-+|+.++..|+++|+.|.++.++
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~   73 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARR   73 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            456789999999998889999999999999999988765

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=95.07  E-value=0.026  Score=53.14  Aligned_cols=58  Identities=31%  Similarity=0.500  Sum_probs=43.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE----------------cCCC----------CChhhhccCCcEEEEe
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV----------------HSHT----------TDPESIVREADIVIAA  217 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~----------------~~~t----------~~l~~~~~~ADIVIsa  217 (299)
                      .-.+.+|.|+|+++-+|.|++++|. .+-.|+-.                |-+|          ..|++.++.||+||-+
T Consensus        25 ~~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP  103 (345)
T KOG1494|consen   25 SQRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP  103 (345)
T ss_pred             ccCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence            3456799999999999999998765 44333333                2222          3688999999999999


Q ss_pred             cCCCC
Q 022295          218 AGQAM  222 (299)
Q Consensus       218 ~g~p~  222 (299)
                      +|.|.
T Consensus       104 AGVPR  108 (345)
T KOG1494|consen  104 AGVPR  108 (345)
T ss_pred             CCCCC
Confidence            99765

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.07  E-value=0.031  Score=51.32  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=29.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~  198 (299)
                      .|++++|+|+|.|++ |.+++..|+..|. ++++++
T Consensus        21 ~L~~~~VlvvG~Ggl-Gs~va~~La~~Gvg~i~lvD   55 (240)
T TIGR02355        21 ALKASRVLIVGLGGL-GCAASQYLAAAGVGNLTLLD   55 (240)
T ss_pred             HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEEe
Confidence            357899999999996 9999999999995 788886

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=95.05  E-value=0.047  Score=51.02  Aligned_cols=95  Identities=13%  Similarity=-0.017  Sum_probs=61.4

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------CChhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------TDPES  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------~~l~~  206 (299)
                      +||.....+..|.+..---.|.+|+|.|+++.||..+++++...|++|+.+.+..                    .++.+
T Consensus       119 l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~  198 (325)
T TIGR02825       119 VGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEE  198 (325)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHH
Confidence            3444444444454443334789999999877789999999999999877654321                    12222


Q ss_pred             hc-----cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          207 IV-----READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       207 ~~-----~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                      .+     +..|+++.++|.+.+- --++++++..++.+|..
T Consensus       199 ~~~~~~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~  239 (325)
T TIGR02825       199 TLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAI  239 (325)
T ss_pred             HHHHhCCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecch
Confidence            11     2368888888865431 23557888888888853

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.04  E-value=0.074  Score=50.39  Aligned_cols=85  Identities=16%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             HHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-------------------CCChhhhcc---CC
Q 022295          155 LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-------------------TTDPESIVR---EA  211 (299)
Q Consensus       155 ~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-------------------t~~l~~~~~---~A  211 (299)
                      +..+++.+. ..|++|+|.|.| .+|..+++++...|+ .|+++.+.                   ..++.+..+   ..
T Consensus       159 ~~al~~~~~-~~g~~VlV~G~G-~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~  236 (343)
T PRK09880        159 IHAAHQAGD-LQGKRVFVSGVG-PIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYF  236 (343)
T ss_pred             HHHHHhcCC-CCCCEEEEECCC-HHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCC
Confidence            344554443 379999999975 469999999999998 56655432                   112333222   27


Q ss_pred             cEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295          212 DIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       212 DIVIsa~g~p~~i--~~~~vk~gavVIDvg~~  241 (299)
                      |+||.++|.+..+  --+.+++|..++.+|..
T Consensus       237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence            9999999987543  23568899999999964

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.04  E-value=0.027  Score=50.95  Aligned_cols=38  Identities=39%  Similarity=0.566  Sum_probs=34.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~   41 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRD   41 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            46889999999999989999999999999999988765

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.04  E-value=0.033  Score=52.10  Aligned_cols=72  Identities=24%  Similarity=0.316  Sum_probs=51.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC-------------------------------------hhhhccC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD-------------------------------------PESIVRE  210 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~-------------------------------------l~~~~~~  210 (299)
                      ++|.|||.|.+ |.++|..|+..|..|++++++...                                     -.+.+++
T Consensus         5 ~~V~vIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQM-GSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRD   83 (295)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence            68999998876 999999999999999999754211                                     1145788


Q ss_pred             CcEEEEecC-CCCc----CC--CCccCCCeEEE-Eeec
Q 022295          211 ADIVIAAAG-QAMM----IK--GSWIKPGAAVI-DVGT  240 (299)
Q Consensus       211 ADIVIsa~g-~p~~----i~--~~~vk~gavVI-Dvg~  240 (299)
                      ||+||.++. .|..    +.  .+.++++++++ +.+.
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~  121 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSS  121 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence            999999987 3331    11  13467777775 4443

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.04  E-value=0.027  Score=50.10  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=34.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ++++|+++|+|+++-+|+.++..|+++|++|++..++.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~   39 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE   39 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            36889999999999999999999999999999887764

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.03  E-value=0.069  Score=51.11  Aligned_cols=56  Identities=23%  Similarity=0.400  Sum_probs=43.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCC--------------------------CCChhhhccCCcEEEEe
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSH--------------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~--------------------------t~~l~~~~~~ADIVIsa  217 (299)
                      ++.++|+|||+|. ||..+|..|+..| ++|.+.+..                          +.++ +.+++||+||.+
T Consensus         4 ~~~~KI~IIGaG~-vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t   81 (321)
T PTZ00082          4 IKRRKISLIGSGN-IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT   81 (321)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence            3457999999877 5999999998888 477777642                          1344 678999999999


Q ss_pred             cCCCC
Q 022295          218 AGQAM  222 (299)
Q Consensus       218 ~g~p~  222 (299)
                      +|.|.
T Consensus        82 ag~~~   86 (321)
T PTZ00082         82 AGLTK   86 (321)
T ss_pred             CCCCC
Confidence            88754

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.00  E-value=0.047  Score=52.19  Aligned_cols=77  Identities=17%  Similarity=0.210  Sum_probs=51.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-CCC---hhhhccCCcEEEEecCCC--CcCCCCccCCCeEEEEeec
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-TTD---PESIVREADIVIAAAGQA--MMIKGSWIKPGAAVIDVGT  240 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-t~~---l~~~~~~ADIVIsa~g~p--~~i~~~~vk~gavVIDvg~  240 (299)
                      -+|.|+|+++.+|.-+..+|.++.- ++.-..++ ..+   ..+...++|+||.|++.-  .-+-+...+.|..|||.+.
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSa   82 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDAAARRELLNAADVAILCLPDDAAREAVALIDNPATRVIDAST   82 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcccCchhhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence            4799999999999999999988762 33322222 112   223446899999998631  1122233467999999998


Q ss_pred             cCCC
Q 022295          241 NAVD  244 (299)
Q Consensus       241 ~~~~  244 (299)
                      .+.-
T Consensus        83 dfRl   86 (313)
T PRK11863         83 AHRT   86 (313)
T ss_pred             hhhc
Confidence            7643

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=94.97  E-value=0.042  Score=52.98  Aligned_cols=171  Identities=22%  Similarity=0.269  Sum_probs=106.9

Q ss_pred             cHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHcc-CCccccCCCC--
Q 022295           53 SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGE-ISLEKDVDGF--  129 (299)
Q Consensus        53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~-i~p~KDVDg~--  129 (299)
                      ++.|-+.-.+.+++-|++.+.+.   +.+.+|+...+      ++.|+++|.--  .+++ .+++++ -.--|=|...  
T Consensus        12 ~e~~~~~~~~~l~~~g~~v~~~~---~~~~eel~~~i------~~~~aviVrs~--tkvt-advl~aa~~~lkvVgrag~   79 (406)
T KOG0068|consen   12 AESLDQACIEILKDNGYQVEFKK---NLSLEELIEKI------KDCDALIVRSK--TKVT-ADVLEAAAGGLKVVGRAGI   79 (406)
T ss_pred             ecccchHHHHHHHhcCceEEEec---cCCHHHHHHHh------ccCCEEEEEeC--Ceec-HHHHHhhcCCeEEEEeccc
Confidence            34555666778888898876554   34556776666      45889998865  5565 455553 2223333221  


Q ss_pred             --Ccccc------cccccCCCCCccccCCHHHHHHH-------H-------------------HhhCCCcCCcEEEEEcC
Q 022295          130 --HPLNI------GKLAMKGRDPLFLPCTPKGCLEL-------L-------------------KRSGVTIKGKRAVVVGR  175 (299)
Q Consensus       130 --~~~n~------g~l~~g~~~~~~~PcT~~av~~l-------l-------------------~~~~~~l~gk~vvViG~  175 (299)
                        ..+++      |-+..+  .|. .  .+.++-|+       |                   ++.|.++.||+.-|+|.
T Consensus        80 G~dNVDL~AAte~gi~Vvn--~P~-~--Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~  154 (406)
T KOG0068|consen   80 GVDNVDLKAATENGILVVN--TPT-A--NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGL  154 (406)
T ss_pred             CccccChhhHHhCCeEEEe--CCC-C--ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeec
Confidence              11111      111111  111 1  12332222       1                   22367899999999999


Q ss_pred             CccchHHHHHHHhhCCCeEEEEcCCCC------------ChhhhccCCcEEEEecC-CC---CcCCCCc---cCCCeEEE
Q 022295          176 SNIVGLPVSLLLLKADATVTIVHSHTT------------DPESIVREADIVIAAAG-QA---MMIKGSW---IKPGAAVI  236 (299)
Q Consensus       176 s~~vG~pla~lL~~~gatVtv~~~~t~------------~l~~~~~~ADIVIsa~g-~p---~~i~~~~---vk~gavVI  236 (299)
                      |.+ |.-+|..+...|..|.-.+--++            .++|.+..||.|-.-++ .|   +++..+-   .|+|..+|
T Consensus       155 GrI-GseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI  233 (406)
T KOG0068|consen  155 GRI-GSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRII  233 (406)
T ss_pred             ccc-hHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEE
Confidence            996 99999999999988877765432            46799999999886666 33   3566554   48899999


Q ss_pred             Eeecc
Q 022295          237 DVGTN  241 (299)
Q Consensus       237 Dvg~~  241 (299)
                      ++..-
T Consensus       234 N~aRG  238 (406)
T KOG0068|consen  234 NVARG  238 (406)
T ss_pred             EecCC
Confidence            98753

>PRK05717 oxidoreductase; Validated

Probab=94.97  E-value=0.03  Score=50.37  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=34.4

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +..++||+++|.|.++.+|+.++..|+++|++|.++.+
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~   42 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADL   42 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcC
Confidence            46789999999999999999999999999999998854

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=94.97  E-value=0.041  Score=49.07  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=33.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~   38 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS   38 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence            5789999999999889999999999999998887653

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07063 short chain dehydrogenase; Provisional

Probab=94.95  E-value=0.027  Score=50.73  Aligned_cols=37  Identities=22%  Similarity=0.386  Sum_probs=33.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~   40 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLD   40 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999989999999999999999988764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.93  E-value=0.051  Score=51.30  Aligned_cols=53  Identities=17%  Similarity=0.281  Sum_probs=42.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------------------------CChhhhcc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------------------------TDPESIVR  209 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------------------------~~l~~~~~  209 (299)
                      ++|.|||.|- +|.++|..|++.|..|++++++.                                      .++.+.++
T Consensus         3 ~~V~VIG~G~-mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          3 GSVAIIGAGL-IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             cEEEEECccH-HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            4799999766 59999999999999999997542                                      24446778


Q ss_pred             CCcEEEEecCCC
Q 022295          210 EADIVIAAAGQA  221 (299)
Q Consensus       210 ~ADIVIsa~g~p  221 (299)
                      ++|+||.++...
T Consensus        82 ~ad~Vi~avpe~   93 (308)
T PRK06129         82 DADYVQESAPEN   93 (308)
T ss_pred             CCCEEEECCcCC
Confidence            999999998743

>PRK06138 short chain dehydrogenase; Provisional

Probab=94.93  E-value=0.028  Score=50.08  Aligned_cols=37  Identities=22%  Similarity=0.407  Sum_probs=33.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~   38 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRD   38 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCC
Confidence            4789999999999999999999999999998888654

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=94.91  E-value=0.076  Score=48.00  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=33.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~   42 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIH   42 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999887654

>PRK08628 short chain dehydrogenase; Provisional

Probab=94.90  E-value=0.041  Score=49.44  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++++||+++|.|+++.+|+.++..|+++|+.|.++.+.
T Consensus         2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~   40 (258)
T PRK08628          2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRS   40 (258)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCC
Confidence            467899999999999999999999999999998877644

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=94.90  E-value=0.038  Score=53.36  Aligned_cols=76  Identities=28%  Similarity=0.418  Sum_probs=52.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhC-CCeEE-EEcCCC---C--------------------ChhhhccCCcEEEEecCCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA-DATVT-IVHSHT---T--------------------DPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~-gatVt-v~~~~t---~--------------------~l~~~~~~ADIVIsa~g~p~  222 (299)
                      .+|.|+|++|.+|+-++.+|.+. +.++. ++.++.   +                    +..+...++|+||.|++..-
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            37999999999999999999877 56766 545331   1                    11233357999999997432


Q ss_pred             --cCCCCccCCCeEEEEeeccCC
Q 022295          223 --MIKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       223 --~i~~~~vk~gavVIDvg~~~~  243 (299)
                        -+-+...+.|..|||.+..+.
T Consensus        81 s~~~~~~~~~~G~~VIDlS~~fR  103 (346)
T TIGR01850        81 SAELAPELLAAGVKVIDLSADFR  103 (346)
T ss_pred             HHHHHHHHHhCCCEEEeCChhhh
Confidence              123334567999999998754

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK08265 short chain dehydrogenase; Provisional

Probab=94.90  E-value=0.034  Score=50.45  Aligned_cols=37  Identities=35%  Similarity=0.527  Sum_probs=33.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDID   39 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998889999999999999999988765

>PRK05867 short chain dehydrogenase; Provisional

Probab=94.90  E-value=0.028  Score=50.58  Aligned_cols=37  Identities=38%  Similarity=0.581  Sum_probs=33.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARH   42 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            4789999999998888999999999999999988765

>PRK08223 hypothetical protein; Validated

Probab=94.90  E-value=0.052  Score=51.33  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=30.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~  198 (299)
                      .|+.++|+|||.|+. |-+++..|+..|. ++++++
T Consensus        24 kL~~s~VlIvG~GGL-Gs~va~~LA~aGVG~i~lvD   58 (287)
T PRK08223         24 RLRNSRVAIAGLGGV-GGIHLLTLARLGIGKFTIAD   58 (287)
T ss_pred             HHhcCCEEEECCCHH-HHHHHHHHHHhCCCeEEEEe
Confidence            467899999999995 9999999999996 788886

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=94.89  E-value=0.065  Score=51.23  Aligned_cols=94  Identities=19%  Similarity=0.199  Sum_probs=63.0

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---------------------hh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---------------------PE  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---------------------l~  205 (299)
                      +||.....+..+...+....|.+++|.|.|. +|..+++++...|+.|+++.+....                     +.
T Consensus       161 l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~-vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~  239 (357)
T PLN02514        161 LLCAGVTVYSPLSHFGLKQSGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQ  239 (357)
T ss_pred             hhhhHHHHHHHHHHcccCCCCCeEEEEcccH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHH
Confidence            3444444555566556656899999999765 6999999999999987666432111                     11


Q ss_pred             hhccCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          206 SIVREADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 ~~~~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                      +.....|++|-++|.+..+.  -+.++++..++.+|..
T Consensus       240 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T PLN02514        240 EAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVI  277 (357)
T ss_pred             HhcCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCC
Confidence            22334699998888654321  2567888888889864

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=94.89  E-value=0.035  Score=50.25  Aligned_cols=37  Identities=19%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (262)
T TIGR03325         2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS   38 (262)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            3679999999999889999999999999999988764

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=94.88  E-value=0.072  Score=49.40  Aligned_cols=94  Identities=18%  Similarity=0.061  Sum_probs=62.0

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPESI  207 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~~  207 (299)
                      +|+.+...+..|.+....-.|.+++|.|+++.||..+++++...|++|+.+.+.                   +.++.+.
T Consensus       124 ~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~  203 (329)
T cd08294         124 LGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEA  203 (329)
T ss_pred             cccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHH
Confidence            455555566666544444578999999987888999999999999987765432                   1222222


Q ss_pred             c-----cCCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295          208 V-----READIVIAAAGQAMMI-KGSWIKPGAAVIDVGT  240 (299)
Q Consensus       208 ~-----~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~  240 (299)
                      +     +..|+|+.++|.+.+- .-+.++++..++.+|.
T Consensus       204 v~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         204 LKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             HHHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcc
Confidence            1     2368888888764321 2345677777888774

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=94.88  E-value=0.14  Score=50.35  Aligned_cols=76  Identities=24%  Similarity=0.374  Sum_probs=56.1

Q ss_pred             cCCHHHHHHHHHhh---CCCcCCcEEEEEcCC----------------ccchHHHHHHHhhCCCeEEEEcCCC-------
Q 022295          148 PCTPKGCLELLKRS---GVTIKGKRAVVVGRS----------------NIVGLPVSLLLLKADATVTIVHSHT-------  201 (299)
Q Consensus       148 PcT~~av~~ll~~~---~~~l~gk~vvViG~s----------------~~vG~pla~lL~~~gatVtv~~~~t-------  201 (299)
                      ++++.-++..+.+.   +-+++||+|+|-|.+                |-.|..+|..|..+||+|++++...       
T Consensus       163 ~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~  242 (390)
T TIGR00521       163 LAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPG  242 (390)
T ss_pred             CCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCC
Confidence            67788877766643   246999999999862                4469999999999999999987532       


Q ss_pred             ---------CCh-h----hhccCCcEEEEecCCCCc
Q 022295          202 ---------TDP-E----SIVREADIVIAAAGQAMM  223 (299)
Q Consensus       202 ---------~~l-~----~~~~~ADIVIsa~g~p~~  223 (299)
                               .++ .    +...+.|++|.+++...+
T Consensus       243 ~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~  278 (390)
T TIGR00521       243 VKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADF  278 (390)
T ss_pred             cEEEEeccHHHHHHHHHHhhcccCCEEEEccccccc
Confidence                     122 1    223468999998887655

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.88  E-value=0.046  Score=49.28  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=34.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999888654

>PRK06172 short chain dehydrogenase; Provisional

Probab=94.87  E-value=0.029  Score=50.25  Aligned_cols=37  Identities=27%  Similarity=0.415  Sum_probs=33.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~   40 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRD   40 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4789999999999999999999999999999888765

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.86  E-value=0.055  Score=53.11  Aligned_cols=71  Identities=25%  Similarity=0.329  Sum_probs=51.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------------------CChhhhccCCcEEEE
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------------------TDPESIVREADIVIA  216 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------------------~~l~~~~~~ADIVIs  216 (299)
                      +|.|||.|- ||.|+|.+|+. |.+|+.++.+.                                .+..+..++||+||.
T Consensus         2 kI~VIGlGy-vGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          2 KITISGTGY-VGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             EEEEECCCH-HHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            589999776 59999988774 89999997531                                123345689999999


Q ss_pred             ecCCCC----------cCC------CCccCCCeEEEEeeccC
Q 022295          217 AAGQAM----------MIK------GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       217 a~g~p~----------~i~------~~~vk~gavVIDvg~~~  242 (299)
                      +++.|-          .+.      .. +++|.+||+-++-+
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~  120 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP  120 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence            999771          110      12 47899999877654

>PRK06057 short chain dehydrogenase; Provisional

Probab=94.86  E-value=0.03  Score=50.38  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=33.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+++|+|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~   40 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDID   40 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            789999999999999999999999999999988765

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.83  E-value=0.035  Score=53.02  Aligned_cols=75  Identities=16%  Similarity=0.249  Sum_probs=52.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC----CChhhhccCCcEEEEecCCC---CcCCCCccCCCeEEEEee
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT----TDPESIVREADIVIAAAGQA---MMIKGSWIKPGAAVIDVG  239 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t----~~l~~~~~~ADIVIsa~g~p---~~i~~~~vk~gavVIDvg  239 (299)
                      -+|.|+|++|..|.-+.++|.++. .++.-..++.    .+..+.+.++|++|.|++.-   .++ +...+.|..|||.+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~-~~~~~~g~~VIDlS   80 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAV-SLVDNPNTCIIDAS   80 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHH-HHHHhCCCEEEECC
Confidence            379999999999999999999875 4444333322    23445568899999998632   122 22345689999999


Q ss_pred             ccCC
Q 022295          240 TNAV  243 (299)
Q Consensus       240 ~~~~  243 (299)
                      ..+.
T Consensus        81 adfR   84 (310)
T TIGR01851        81 TAYR   84 (310)
T ss_pred             hHHh
Confidence            7754

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.79  E-value=0.066  Score=50.22  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=50.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------------------------------CCChhhhcc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------------------------------TTDPESIVR  209 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------------------------------t~~l~~~~~  209 (299)
                      ++|.|||+|.+ |.++|..|+..|..|++.+..                                      +.++ +.++
T Consensus         6 ~~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~   83 (286)
T PRK07819          6 QRVGVVGAGQM-GAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA   83 (286)
T ss_pred             cEEEEEcccHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence            48999998775 999999999999999999744                                      1233 4578


Q ss_pred             CCcEEEEecCC-CC----cC-C-CCcc-CCCeEEEEeec
Q 022295          210 EADIVIAAAGQ-AM----MI-K-GSWI-KPGAAVIDVGT  240 (299)
Q Consensus       210 ~ADIVIsa~g~-p~----~i-~-~~~v-k~gavVIDvg~  240 (299)
                      +||+||-++.- ..    ++ . ..+. +|++++..-..
T Consensus        84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS  122 (286)
T PRK07819         84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS  122 (286)
T ss_pred             CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence            99999988762 21    11 1 1334 67887766443

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.79  E-value=0.025  Score=53.87  Aligned_cols=91  Identities=20%  Similarity=0.289  Sum_probs=65.6

Q ss_pred             HHHHHHHHHh----------hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------------
Q 022295          151 PKGCLELLKR----------SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------------  200 (299)
Q Consensus       151 ~~av~~ll~~----------~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------------  200 (299)
                      ..+++..+-.          .+...++.+++++|.|-+ |-.++..-...|+-||-..-+                    
T Consensus       138 y~aVi~Aa~a~~rffpm~~TAagtv~pA~vlv~G~Gva-gl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~e  216 (356)
T COG3288         138 YIAVIGAALAYGRFFPMQITAAGTVSPAKVLVIGAGVA-GLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDE  216 (356)
T ss_pred             HHHHHHHHHHhhhcccchhhhcccccchhhhhhhHHHH-HHHHHHHHhhcceEEehhhhhhHHhhhhhhccccccccccc
Confidence            4567777766          345678889999998765 877776666667777655321                    


Q ss_pred             ----------C--------CChhhhccCCcEEEEecC-----CCCcCCCCcc---CCCeEEEEeeccC
Q 022295          201 ----------T--------TDPESIVREADIVIAAAG-----QAMMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       201 ----------t--------~~l~~~~~~ADIVIsa~g-----~p~~i~~~~v---k~gavVIDvg~~~  242 (299)
                                +        .-+.++.++.|||||..=     .|.+++.+|+   |||++++|+....
T Consensus       217 e~~gGYAk~ms~~~~~~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~  284 (356)
T COG3288         217 ESAGGYAKEMSEEFIAKQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAET  284 (356)
T ss_pred             ccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhc
Confidence                      0        113488999999998763     3558999996   9999999998753

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.77  E-value=0.073  Score=51.06  Aligned_cols=51  Identities=22%  Similarity=0.180  Sum_probs=42.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------------CCChhhhccCCcE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------------TTDPESIVREADI  213 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------------t~~l~~~~~~ADI  213 (299)
                      ++|.|||+|-+ |..+|..++..|..|++.+..                                  +.++.+.+.+||+
T Consensus         8 ~~VaVIGaG~M-G~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVI-GSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            68999998765 999999999999999998642                                  2356678899999


Q ss_pred             EEEecC
Q 022295          214 VIAAAG  219 (299)
Q Consensus       214 VIsa~g  219 (299)
                      ||-++.
T Consensus        87 ViEavp   92 (321)
T PRK07066         87 IQESAP   92 (321)
T ss_pred             EEECCc
Confidence            998876

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.77  E-value=0.051  Score=48.92  Aligned_cols=37  Identities=24%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS   40 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999999999999999999998877543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.75  E-value=0.042  Score=51.29  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|.|||.|.+ |.++|..|++.|..|++++.+
T Consensus         4 ~~I~ViGaG~m-G~~iA~~la~~G~~V~l~d~~   35 (291)
T PRK06035          4 KVIGVVGSGVM-GQGIAQVFARTGYDVTIVDVS   35 (291)
T ss_pred             cEEEEECccHH-HHHHHHHHHhcCCeEEEEeCC
Confidence            68999998875 999999999999999999754

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.75  E-value=0.047  Score=52.62  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=30.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~  199 (299)
                      .|++++|+|||.|+. |.++|..|+..|. ++++++.
T Consensus        21 ~L~~~~VlIiG~Ggl-Gs~va~~La~aGvg~i~lvD~   56 (338)
T PRK12475         21 KIREKHVLIVGAGAL-GAANAEALVRAGIGKLTIADR   56 (338)
T ss_pred             hhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC
Confidence            468899999999885 9999999999996 8888864

>PRK07890 short chain dehydrogenase; Provisional

Probab=94.71  E-value=0.032  Score=50.00  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=32.7

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++|+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~   38 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAART   38 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            578999999999999999999999999999888654

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.68  E-value=0.052  Score=48.39  Aligned_cols=52  Identities=19%  Similarity=0.218  Sum_probs=42.6

Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-----------------------CChhhhccCCcEEEEecCCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-----------------------TDPESIVREADIVIAAAGQA  221 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-----------------------~~l~~~~~~ADIVIsa~g~p  221 (299)
                      |+|+|++|.+|++++..|++.+.+|+++.|..                       ..+.+.++.+|.||..++..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            68999988899999999999999999987753                       13456788889988888843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.66  E-value=0.051  Score=49.95  Aligned_cols=34  Identities=35%  Similarity=0.512  Sum_probs=30.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~  198 (299)
                      .|+.++|+|||.|++ |.+++..|+..|. ++++++
T Consensus        29 ~L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD   63 (245)
T PRK05690         29 KLKAARVLVVGLGGL-GCAASQYLAAAGVGTLTLVD   63 (245)
T ss_pred             HhcCCeEEEECCCHH-HHHHHHHHHHcCCCEEEEEc
Confidence            468899999999885 9999999999996 788885

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.66  E-value=0.081  Score=53.01  Aligned_cols=123  Identities=15%  Similarity=0.174  Sum_probs=73.7

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-Chhh--hccCCcEEEEecCC-CCcCCCCccCCCeEEEEeec
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-DPES--IVREADIVIAAAGQ-AMMIKGSWIKPGAAVIDVGT  240 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-~l~~--~~~~ADIVIsa~g~-p~~i~~~~vk~gavVIDvg~  240 (299)
                      +.||+|+|+|.|.. |++++.+|.++|+.|++.+.+.. +..+  .+++ ++...-.+. +..+.    ....+|+--|+
T Consensus         6 ~~~~~v~v~G~G~s-G~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~----~~d~vV~SpgI   79 (468)
T PRK04690          6 LEGRRVALWGWGRE-GRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEASAQRLA----AFDVVVKSPGI   79 (468)
T ss_pred             cCCCEEEEEccchh-hHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHcc----CCCEEEECCCC
Confidence            46899999999987 99999999999999999985532 2221  2333 322222221 11121    23456666666


Q ss_pred             cCCCCC---ccCCCceeeccCCc-hhh-hh-h--hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          241 NAVDDS---TKKSGYRLVGDVDF-HEA-CK-V--AGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       241 ~~~~~~---~~~~g~kl~GDvdf-~~~-~~-~--a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      ++....   -...|-.+.+++++ -.. .+ .  ...+--|-|-.|.=|+.-|+.++++..
T Consensus        80 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         80 SPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             CCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            653110   00112257888886 211 11 0  011234669999999999999998764

>PRK12829 short chain dehydrogenase; Provisional

Probab=94.65  E-value=0.049  Score=48.87  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=33.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++|+++|.|+++.+|+.++..|+++|++|+++.+.
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~   44 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVS   44 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999888764

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=94.62  E-value=0.039  Score=49.67  Aligned_cols=38  Identities=32%  Similarity=0.409  Sum_probs=34.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++.+|..++..|+++|++|+++.+.
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~   45 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARK   45 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999999999999999999999999988764

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=94.61  E-value=0.042  Score=44.46  Aligned_cols=75  Identities=24%  Similarity=0.255  Sum_probs=47.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhC-CCeEEEE-cCCC---CC---------------hh-hhc--cCCcEEEEecCCCCc--
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKA-DATVTIV-HSHT---TD---------------PE-SIV--READIVIAAAGQAMM--  223 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~-gatVtv~-~~~t---~~---------------l~-~~~--~~ADIVIsa~g~p~~--  223 (299)
                      ++.|+|.++.+|+-++..|... +.+++.+ .++.   +.               .. +.+  .++|+||.+++....  
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            4678887777788888877774 6665554 2210   00               00 112  479999999985432  


Q ss_pred             -CC--CCccCCCeEEEEeeccCC
Q 022295          224 -IK--GSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       224 -i~--~~~vk~gavVIDvg~~~~  243 (299)
                       +.  ...+++|.+|||++....
T Consensus        81 ~~~~~~~~~~~g~~viD~s~~~~  103 (122)
T smart00859       81 IAPLLPKAAEAGVKVIDLSSAFR  103 (122)
T ss_pred             HHHHHHhhhcCCCEEEECCcccc
Confidence             11  223578999999997653

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK09186 flagellin modification protein A; Provisional

Probab=94.61  E-value=0.042  Score=49.14  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=32.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~   37 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADID   37 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence            578999999999889999999999999999888654

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=94.61  E-value=0.085  Score=52.85  Aligned_cols=53  Identities=28%  Similarity=0.305  Sum_probs=44.4

Q ss_pred             ccCCHHHHHHHH----HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEcCC
Q 022295          147 LPCTPKGCLELL----KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVHSH  200 (299)
Q Consensus       147 ~PcT~~av~~ll----~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~~~  200 (299)
                      -++|.+|++..+    ++.+.+++||+|+|=|.|+ ||..+|..|.+.||+|. +++++
T Consensus       213 ~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~Gn-Vg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        213 PEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGN-VAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             CcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEcCC
Confidence            457998876554    5568899999999999877 69999999999999877 88765

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.60  E-value=0.092  Score=49.40  Aligned_cols=94  Identities=17%  Similarity=0.082  Sum_probs=61.3

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------------CChh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------------TDPE  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------------~~l~  205 (299)
                      +||.....+..|.+..---.|.+|+|.|+++.||..+++++...|++|+.+.+..                     .++.
T Consensus       132 l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  211 (338)
T cd08295         132 LGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLD  211 (338)
T ss_pred             cccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHH
Confidence            4555555666665544445799999999978889999999999999876644321                     1222


Q ss_pred             hhc-----cCCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295          206 SIV-----READIVIAAAGQAMMI-KGSWIKPGAAVIDVGT  240 (299)
Q Consensus       206 ~~~-----~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~  240 (299)
                      +.+     ..+|+++.++|...+- .-++++++..++.+|.
T Consensus       212 ~~i~~~~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         212 AALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             HHHHHhCCCCcEEEEECCCHHHHHHHHHHhccCcEEEEecc
Confidence            211     2467888777753221 2355777777778774

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.59  E-value=0.092  Score=49.83  Aligned_cols=53  Identities=23%  Similarity=0.364  Sum_probs=41.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      ++|.|||.|. ||..+|..|+.+|. .|++++..                          +.++.+ +++||+||.++|.
T Consensus         2 ~KV~VIGaG~-vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGAGF-VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECcCH-HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence            4799999866 69999999998874 78888642                          234434 8999999999996


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        80 p~   81 (305)
T TIGR01763        80 PR   81 (305)
T ss_pred             CC
Confidence            64

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK05872 short chain dehydrogenase; Provisional

Probab=94.59  E-value=0.034  Score=51.71  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=34.2

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLE   42 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999989999999999999999988764

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.58  E-value=0.03  Score=54.06  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=54.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhC---CCeEEEEcCCC---------------CChhhh-ccCCcEEEEecCCCC--cC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKA---DATVTIVHSHT---------------TDPESI-VREADIVIAAAGQAM--MI  224 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~---gatVtv~~~~t---------------~~l~~~-~~~ADIVIsa~g~p~--~i  224 (299)
                      ++.+|.|||++|.||+-+..+|.++   ..++....|..               .++.+. ..++|++|.|+|.--  -+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~   82 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY   82 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence            4578999999999999999999984   35666665431               122222 267899999986421  12


Q ss_pred             CCCccCCCeEEEEeeccCC
Q 022295          225 KGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       225 ~~~~vk~gavVIDvg~~~~  243 (299)
                      -++..+.|+.|||.+..+.
T Consensus        83 ~~~~~~~g~~VIDlS~~fR  101 (336)
T PRK08040         83 AEEATNAGCLVIDSSGLFA  101 (336)
T ss_pred             HHHHHHCCCEEEECChHhc
Confidence            3334567999999997654

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=94.56  E-value=0.14  Score=47.34  Aligned_cols=94  Identities=17%  Similarity=0.197  Sum_probs=62.4

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChh--
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPE--  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~--  205 (299)
                      +|+.+..++..++... --.|.+++|.|.++.+|..+++++...|++|+++.+..                   .++.  
T Consensus       121 ~~~~~~ta~~~~~~~~-~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  199 (324)
T cd08292         121 LIAMPLSALMLLDFLG-VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDK  199 (324)
T ss_pred             ccccHHHHHHHHHhhC-CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHH
Confidence            4455555555554432 33689999999988899999999999999876664321                   1111  


Q ss_pred             --hhc--cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          206 --SIV--READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 --~~~--~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                        +.+  +..|+|+.++|.+..- --..++++..++++|..
T Consensus       200 i~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~  240 (324)
T cd08292         200 VREAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGSM  240 (324)
T ss_pred             HHHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEecC
Confidence              122  2489999888875321 12456788888998853

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=94.54  E-value=0.097  Score=50.70  Aligned_cols=94  Identities=20%  Similarity=0.229  Sum_probs=63.4

Q ss_pred             ccCCHHHHHHHHHhhCCC-cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---------------------h
Q 022295          147 LPCTPKGCLELLKRSGVT-IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---------------------P  204 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~-l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---------------------l  204 (299)
                      ++|.....+..+.+.+.. -.|..|+|.|.|. +|..+++++...|++|+++.+....                     +
T Consensus       158 l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v  236 (375)
T PLN02178        158 LLCAGITVYSPMKYYGMTKESGKRLGVNGLGG-LGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKM  236 (375)
T ss_pred             hhccchHHHHHHHHhCCCCCCCCEEEEEcccH-HHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHH
Confidence            455555556666655543 3689999999765 6999999999999987766432111                     1


Q ss_pred             hhhccCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295          205 ESIVREADIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       205 ~~~~~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~  241 (299)
                      .+.+..+|+||.++|.+..+  --+.++++..++.+|..
T Consensus       237 ~~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~  275 (375)
T PLN02178        237 KEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLP  275 (375)
T ss_pred             HHhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccC
Confidence            11223479999998876432  23557888888888864

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=94.54  E-value=0.05  Score=49.26  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=33.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      .+++||+++|.|++.-+|+.++..|+++|++|+++.+
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~   40 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN   40 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            3578999999999999999999999999999988754

>PRK08703 short chain dehydrogenase; Provisional

Probab=94.53  E-value=0.046  Score=48.63  Aligned_cols=38  Identities=34%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++||+++|.|.++.+|+.++..|+++|++|+++.++.
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~   40 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ   40 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            47899999999999999999999999999999887654

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=94.50  E-value=0.071  Score=50.41  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCC--CeEEEEcC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHS  199 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~g--atVtv~~~  199 (299)
                      ++||+++|.|+++.+|+.++..|+++|  ++|+++.+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r   38 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSR   38 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            578999999999999999999999886  68887754

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK07060 short chain dehydrogenase; Provisional

Probab=94.49  E-value=0.049  Score=48.26  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=34.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++|++++|.|+++.+|+.++..|+++|++|.++.++
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~   42 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARN   42 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998888999999999999999988765

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.48  E-value=0.1  Score=49.07  Aligned_cols=53  Identities=26%  Similarity=0.398  Sum_probs=41.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      ++|.|||+|. ||..+|..|+..|. +|.+.+..                          +.+. +.+++||+||.++|.
T Consensus         3 ~KI~VIGaG~-vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~   80 (307)
T PRK06223          3 KKISIIGAGN-VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV   80 (307)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence            5899999855 69999999998764 88888743                          1233 568999999999987


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        81 p~   82 (307)
T PRK06223         81 PR   82 (307)
T ss_pred             CC
Confidence            64

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.48  E-value=0.08  Score=52.58  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+|.|+|.|+. |+++|.+|.++|++|++++..
T Consensus         7 ~~~~~i~viG~G~~-G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390          7 FAGKTVAVFGLGGS-GLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEECCC
Confidence            67899999999997 999999999999999999865

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=94.47  E-value=0.09  Score=50.55  Aligned_cols=71  Identities=18%  Similarity=0.311  Sum_probs=54.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------CCChhhhccCCcEEEEecC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------TTDPESIVREADIVIAAAG  219 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------t~~l~~~~~~ADIVIsa~g  219 (299)
                      ++|.|+|+|.- |.++|..|.+.|..|++--++                            |.|+.+.++.||+|+.+++
T Consensus         2 ~kI~ViGaGsw-GTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSW-GTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChH-HHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence            57999998775 999999999999888877532                            4578899999999999998


Q ss_pred             CCCc---CC--CCccCCCeEEEEee
Q 022295          220 QAMM---IK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       220 ~p~~---i~--~~~vk~gavVIDvg  239 (299)
                      +-.+   ++  +..+++++.++-+.
T Consensus        81 s~~~r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          81 SQALREVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             hHHHHHHHHHHhhhccCCCeEEEEe
Confidence            6432   11  25567777776653

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.46  E-value=0.055  Score=50.48  Aligned_cols=67  Identities=24%  Similarity=0.311  Sum_probs=49.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------------------------CChhhhcc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------------------------TDPESIVR  209 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------------------------~~l~~~~~  209 (299)
                      ++|.|||.|.+ |.++|..|+..|.+|++.+++.                                      .++ +.+.
T Consensus         5 ~kI~vIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~   82 (292)
T PRK07530          5 KKVGVIGAGQM-GNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-EDLA   82 (292)
T ss_pred             CEEEEECCcHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HHhc
Confidence            68999998775 9999999999999999987542                                      122 3467


Q ss_pred             CCcEEEEecCCC-C----cCC--CCccCCCeEEE
Q 022295          210 EADIVIAAAGQA-M----MIK--GSWIKPGAAVI  236 (299)
Q Consensus       210 ~ADIVIsa~g~p-~----~i~--~~~vk~gavVI  236 (299)
                      +||+||.+++.. .    ++.  ...++++++++
T Consensus        83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~  116 (292)
T PRK07530         83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA  116 (292)
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence            899999999743 2    121  13467788776

>cd00704 MDH Malate dehydrogenase

Probab=94.45  E-value=0.096  Score=50.20  Aligned_cols=54  Identities=17%  Similarity=0.388  Sum_probs=40.9

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC-C------eEEEEcCCC--------------------------CChhhhccCCcEEE
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD-A------TVTIVHSHT--------------------------TDPESIVREADIVI  215 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g-a------tVtv~~~~t--------------------------~~l~~~~~~ADIVI  215 (299)
                      +|+|+|++|.||..++..|...+ +      .+.+.+.+.                          .+..+.+++||+||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            79999996778999999998765 2      266665432                          23447899999999


Q ss_pred             EecCCCC
Q 022295          216 AAAGQAM  222 (299)
Q Consensus       216 sa~g~p~  222 (299)
                      .+.|.|.
T Consensus        82 itAG~~~   88 (323)
T cd00704          82 LVGAFPR   88 (323)
T ss_pred             EeCCCCC
Confidence            9999764

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06841 short chain dehydrogenase; Provisional

Probab=94.44  E-value=0.064  Score=47.99  Aligned_cols=38  Identities=26%  Similarity=0.418  Sum_probs=34.0

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|..++..|+++|++|.++.+.
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~   48 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS   48 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999989999999999999999888764

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.42  E-value=0.083  Score=53.38  Aligned_cols=53  Identities=21%  Similarity=0.234  Sum_probs=43.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------------CCChhhhccCCcE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------------TTDPESIVREADI  213 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------------t~~l~~~~~~ADI  213 (299)
                      ++|.|||.|.+ |.++|..|++.|..|++++.+                                  +.++.+.+++||+
T Consensus         5 ~kIavIG~G~M-G~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~   83 (495)
T PRK07531          5 MKAACIGGGVI-GGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW   83 (495)
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence            57999998775 999999999999999998743                                  1245567899999


Q ss_pred             EEEecCCC
Q 022295          214 VIAAAGQA  221 (299)
Q Consensus       214 VIsa~g~p  221 (299)
                      ||.++.-.
T Consensus        84 Vieavpe~   91 (495)
T PRK07531         84 IQESVPER   91 (495)
T ss_pred             EEEcCcCC
Confidence            99988743

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=94.41  E-value=0.098  Score=46.64  Aligned_cols=38  Identities=26%  Similarity=0.370  Sum_probs=33.7

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++++|+++|.|+++-+|+.++..|+++|+.|+++.++
T Consensus         4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~   41 (252)
T PRK08220          4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA   41 (252)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            35789999999999989999999999999999888654

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.41  E-value=0.1  Score=52.46  Aligned_cols=123  Identities=16%  Similarity=0.295  Sum_probs=69.9

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-ChhhhccCC--cEEEEecC--CCCcCCCCccCCCeEEEEee
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-DPESIVREA--DIVIAAAG--QAMMIKGSWIKPGAAVIDVG  239 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-~l~~~~~~A--DIVIsa~g--~p~~i~~~~vk~gavVIDvg  239 (299)
                      +.+|+|.|+|-|+. |+++|++|.++|+.|+.++++.. ...+.++..  .+-+. .|  .|..++    ....+|+.-|
T Consensus         5 ~~~~~i~v~G~G~s-G~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~-~g~~~~~~~~----~~d~vv~sp~   78 (498)
T PRK02006          5 LQGPMVLVLGLGES-GLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFV-GGPFDPALLD----GVDLVALSPG   78 (498)
T ss_pred             cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEE-eCCCchhHhc----CCCEEEECCC
Confidence            56899999999997 99999999999999999986532 111223222  11111 11  111121    1245566666


Q ss_pred             ccCCCC---C----ccCCCceeeccCCchh-hhhh------hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          240 TNAVDD---S----TKKSGYRLVGDVDFHE-ACKV------AGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       240 ~~~~~~---~----~~~~g~kl~GDvdf~~-~~~~------a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      +++...   +    -...|-++.++.++-. ..+.      ...+--|-|=-|.=|+..|+.++++.+
T Consensus        79 I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~  146 (498)
T PRK02006         79 LSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERA  146 (498)
T ss_pred             CCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            654210   0    0001225667766522 1110      001123568889999999999998764

>PRK06125 short chain dehydrogenase; Provisional

Probab=94.40  E-value=0.045  Score=49.39  Aligned_cols=37  Identities=19%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|.++-+|+.++..|+++|++|.++.++
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~   40 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARD   40 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4789999999998888999999999999999988754

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.40  E-value=0.08  Score=47.10  Aligned_cols=34  Identities=35%  Similarity=0.498  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~   34 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLG   34 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999998765

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK08264 short chain dehydrogenase; Validated

Probab=94.39  E-value=0.059  Score=47.72  Aligned_cols=38  Identities=29%  Similarity=0.312  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t  201 (299)
                      .+.+++++|+|+++-+|+.++..|+++|+ .|+++.+..
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~   41 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP   41 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence            36789999999999999999999999999 999888653

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.39  E-value=0.04  Score=51.83  Aligned_cols=37  Identities=38%  Similarity=0.468  Sum_probs=33.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|++.-+|+.++..|+++|++|+++.++
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~   47 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRN   47 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999989999999999999999988664

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=94.39  E-value=0.12  Score=48.40  Aligned_cols=35  Identities=29%  Similarity=0.193  Sum_probs=31.0

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ..||+|+|.|+++.+|+.++..|+++|.+|+.+.+
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r   37 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVR   37 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence            46899999999999999999999999999886543

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=94.38  E-value=0.07  Score=47.21  Aligned_cols=78  Identities=22%  Similarity=0.348  Sum_probs=46.7

Q ss_pred             cCCcEEEEEc----------------CCccchHHHHHHHhhCCCeEEEEcCCCC--------------------Chhhhc
Q 022295          165 IKGKRAVVVG----------------RSNIVGLPVSLLLLKADATVTIVHSHTT--------------------DPESIV  208 (299)
Q Consensus       165 l~gk~vvViG----------------~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~l~~~~  208 (299)
                      |+||+|+|-+                .||-.|..+|..+..+||.|++.|..+.                    .+.+.+
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~   80 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELL   80 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhcccc
Confidence            4678888775                3556799999999999999999987631                    133667


Q ss_pred             cCCcEEEEecCCCCcCC----CCccCC---CeEEEEeeccC
Q 022295          209 READIVIAAAGQAMMIK----GSWIKP---GAAVIDVGTNA  242 (299)
Q Consensus       209 ~~ADIVIsa~g~p~~i~----~~~vk~---gavVIDvg~~~  242 (299)
                      +++|++|.|+-...|-.    ..-+++   ....+.+--+|
T Consensus        81 ~~~Di~I~aAAVsDf~p~~~~~~KIkK~~~~~l~l~L~~~p  121 (185)
T PF04127_consen   81 PSADIIIMAAAVSDFRPEEPAEGKIKKSSGDELTLELKPTP  121 (185)
T ss_dssp             GGGSEEEE-SB--SEEESCHHSS-G---TT-CEEEEEEE-G
T ss_pred             CcceeEEEecchhheeehhccccccccccCcceEEEEEeCh
Confidence            88999998877665522    233552   35666666554

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=94.38  E-value=0.048  Score=49.41  Aligned_cols=39  Identities=28%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..+++||+++|.|.++.+|+.++..|+.+|++|.+..+.
T Consensus         5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~   43 (265)
T PRK07097          5 LFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDIN   43 (265)
T ss_pred             ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            346899999999999999999999999999999888654

>PRK09242 tropinone reductase; Provisional

Probab=94.38  E-value=0.042  Score=49.45  Aligned_cols=38  Identities=29%  Similarity=0.427  Sum_probs=33.8

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..++||+++|.|+++-+|+.++..|.++|++|+++.++
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~   42 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARD   42 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999998889999999999999999888654

>PRK06196 oxidoreductase; Provisional

Probab=94.37  E-value=0.046  Score=51.22  Aligned_cols=39  Identities=31%  Similarity=0.417  Sum_probs=35.3

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..+++||+++|.|+++-+|+.++..|+.+|++|+++.++
T Consensus        21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~   59 (315)
T PRK06196         21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR   59 (315)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            567899999999999889999999999999999988765

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.35  E-value=0.15  Score=50.02  Aligned_cols=75  Identities=24%  Similarity=0.306  Sum_probs=55.6

Q ss_pred             CCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCCC-----------CChhhhccCCcEEEEecCCCC
Q 022295          163 VTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSHT-----------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       163 ~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~t-----------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      .+++|++|.|+|-+         +.-...++..|.++|++|.+.+-..           .++.+.++.||.||.+|..+.
T Consensus       309 ~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~  388 (411)
T TIGR03026       309 GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE  388 (411)
T ss_pred             hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH
Confidence            46899999999932         2236788999999999999986431           356688999999999999988


Q ss_pred             cCCCC--ccCC---CeEEEE
Q 022295          223 MIKGS--WIKP---GAAVID  237 (299)
Q Consensus       223 ~i~~~--~vk~---gavVID  237 (299)
                      |-..+  .+++   ..+|+|
T Consensus       389 ~~~~~~~~~~~~~~~~~v~D  408 (411)
T TIGR03026       389 FKDLDLEKIKDLMKGKVVVD  408 (411)
T ss_pred             HhccCHHHHHHhcCCCEEEe
Confidence            74333  3322   347888

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=94.30  E-value=0.092  Score=51.27  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=61.3

Q ss_pred             cEEEEEcCCccchHHHHHHHh-hCCC---eEEEEcCC-C--------------CChh--hhccCCcEEEEecCCC--CcC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLL-KADA---TVTIVHSH-T--------------TDPE--SIVREADIVIAAAGQA--MMI  224 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~-~~ga---tVtv~~~~-t--------------~~l~--~~~~~ADIVIsa~g~p--~~i  224 (299)
                      ++|.|||+.|.||+-+..+|. +++.   ++....+. +              .++.  +..++.|+++.++|.-  .-+
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~   80 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI   80 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence            579999999999999999888 5553   33333321 0              1222  2467899999998742  223


Q ss_pred             CCCccCCC--eEEEEeeccCCCCCccCCCceeeccCCchhhhh
Q 022295          225 KGSWIKPG--AAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK  265 (299)
Q Consensus       225 ~~~~vk~g--avVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~  265 (299)
                      -+...+.|  ++|||-.....-+++-+   -++-.|+.+.+..
T Consensus        81 ~p~~~~aG~~~~VIDnSSa~Rmd~dVP---LVVPeVN~~~i~~  120 (366)
T TIGR01745        81 YPKLRESGWQGYWIDAASSLRMKDDAV---IILDPVNQDVITD  120 (366)
T ss_pred             HHHHHhCCCCeEEEECChhhhcCCCCC---EEeCCcCHHHHHh
Confidence            44456779  89999987755443222   3566666555443

>PRK05876 short chain dehydrogenase; Provisional

Probab=94.29  E-value=0.044  Score=50.45  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~   39 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVD   39 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            689999999999999999999999999999988654

>PRK07774 short chain dehydrogenase; Provisional

Probab=94.28  E-value=0.06  Score=47.97  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=33.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.+..+.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~   39 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADIN   39 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4688999999998889999999999999999988765

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=94.27  E-value=0.054  Score=48.54  Aligned_cols=37  Identities=35%  Similarity=0.519  Sum_probs=33.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.+.
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~   40 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLN   40 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence            3679999999999999999999999999999888654

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.27  E-value=0.078  Score=49.78  Aligned_cols=51  Identities=14%  Similarity=0.181  Sum_probs=41.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccCCcEEEEecC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVREADIVIAAAG  219 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g  219 (299)
                      +|+|.|++|.+|+.++..|+++|.+|++..|+..                     .+.+.++.+|+||.+++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            6999999999999999999999999988865421                     23456778888887765

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=94.25  E-value=0.052  Score=50.63  Aligned_cols=40  Identities=38%  Similarity=0.459  Sum_probs=36.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      ..+.||.++|-|++.-+|+++|.+|++.||+|++|.++..
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~   43 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEE   43 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4589999999999998999999999999999999987643

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.25  E-value=0.2  Score=44.45  Aligned_cols=95  Identities=29%  Similarity=0.415  Sum_probs=64.9

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPESI  207 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~~  207 (299)
                      +|+.....+..+.....-..|.+++|.|.+. +|..+++++...|++|+.+.+..                   .+..+.
T Consensus       115 ~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  193 (271)
T cd05188         115 LPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEE  193 (271)
T ss_pred             hcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHH
Confidence            4454555566666655546899999999999 89999999999999888775431                   111111


Q ss_pred             -----ccCCcEEEEecCCCCcC--CCCccCCCeEEEEeeccC
Q 022295          208 -----VREADIVIAAAGQAMMI--KGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       208 -----~~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~~  242 (299)
                           -...|++|.++|.+..+  ..+.++++..++++|...
T Consensus       194 ~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         194 LRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             HHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCC
Confidence                 24579999888863322  234567788888888654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK07478 short chain dehydrogenase; Provisional

Probab=94.24  E-value=0.051  Score=48.81  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~   39 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARR   39 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            3678999999999889999999999999999888654

>PRK06194 hypothetical protein; Provisional

Probab=94.22  E-value=0.055  Score=49.49  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=32.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~   39 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQ   39 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999889999999999999999988754

>PRK07035 short chain dehydrogenase; Provisional

Probab=94.22  E-value=0.048  Score=48.81  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++++|+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~   41 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK   41 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999888765

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=94.21  E-value=0.048  Score=49.27  Aligned_cols=36  Identities=19%  Similarity=0.368  Sum_probs=32.9

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERS   39 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            679999999999889999999999999999988764

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=94.21  E-value=0.06  Score=56.72  Aligned_cols=73  Identities=27%  Similarity=0.336  Sum_probs=54.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCC----------------CChhhhccCCcEEEEecCCCCc---CC-
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHT----------------TDPESIVREADIVIAAAGQAMM---IK-  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~~---i~-  225 (299)
                      ++|.|||.|.+ |..++..|.+.|  ..|++++++.                .++.+.+.++|+||.+++...+   +. 
T Consensus         4 ~~I~IIG~G~m-G~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~   82 (735)
T PRK14806          4 GRVVVIGLGLI-GGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLAD   82 (735)
T ss_pred             cEEEEEeeCHH-HHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence            68999998885 999999999888  4788887542                2355668899999999984321   21 


Q ss_pred             -CCccCCCeEEEEeecc
Q 022295          226 -GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       226 -~~~vk~gavVIDvg~~  241 (299)
                       ...++++.+|+|++..
T Consensus        83 l~~~~~~~~ii~d~~sv   99 (735)
T PRK14806         83 LKPLLSEHAIVTDVGST   99 (735)
T ss_pred             HHHhcCCCcEEEEcCCC
Confidence             1345788999999864

>cd08293 PTGR2 Prostaglandin reductase

Probab=94.20  E-value=0.11  Score=48.72  Aligned_cols=90  Identities=14%  Similarity=0.120  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhhC-CCc-CCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC--------------------CChhhh
Q 022295          151 PKGCLELLKRSG-VTI-KGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT--------------------TDPESI  207 (299)
Q Consensus       151 ~~av~~ll~~~~-~~l-~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t--------------------~~l~~~  207 (299)
                      ....+..|.+.. +.. .|.+|+|.|+++.+|..+++++...|+ .|+.+.+..                    .++.+.
T Consensus       137 ~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~  216 (345)
T cd08293         137 GLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAER  216 (345)
T ss_pred             HHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHH
Confidence            334444454332 322 248999999977789999999999998 677664321                    122222


Q ss_pred             c-----cCCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295          208 V-----READIVIAAAGQAMMI-KGSWIKPGAAVIDVGT  240 (299)
Q Consensus       208 ~-----~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~  240 (299)
                      +     +..|+++.++|.+.+- .-+.++++..++.+|.
T Consensus       217 i~~~~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         217 LRELCPEGVDVYFDNVGGEISDTVISQMNENSHIILCGQ  255 (345)
T ss_pred             HHHHCCCCceEEEECCCcHHHHHHHHHhccCCEEEEEee
Confidence            2     2478888888865431 1245788888888884

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.20  E-value=0.064  Score=48.44  Aligned_cols=37  Identities=27%  Similarity=0.338  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|+|+++-+|+.++..|+++|+.|.++.++
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~   40 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS   40 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999998887653

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.19  E-value=0.056  Score=47.90  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=32.7

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +.+|+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~   39 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC   39 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999999999999999999999888665

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.18  E-value=0.078  Score=47.70  Aligned_cols=35  Identities=14%  Similarity=0.366  Sum_probs=30.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~  199 (299)
                      .|+.++|+|||.|++ |..++..|...|. ++++++.
T Consensus        25 ~L~~~~V~ViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   60 (212)
T PRK08644         25 KLKKAKVGIAGAGGL-GSNIAVALARSGVGNLKLVDF   60 (212)
T ss_pred             HHhCCCEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            467899999999996 9999999999996 6888863

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=94.18  E-value=0.26  Score=47.74  Aligned_cols=79  Identities=24%  Similarity=0.306  Sum_probs=56.5

Q ss_pred             ccccCCHHHHHHHHHhhC------CCcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCC-----------------
Q 022295          145 LFLPCTPKGCLELLKRSG------VTIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSH-----------------  200 (299)
Q Consensus       145 ~~~PcT~~av~~ll~~~~------~~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~-----------------  200 (299)
                      ..+|+++.-.++.|-+..      -.-+|+.|+|+|+|+.||..+.+++...| +.|+.+-|.                 
T Consensus       130 a~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy  209 (347)
T KOG1198|consen  130 AALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDY  209 (347)
T ss_pred             hcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecC
Confidence            346776666666666665      45689999999999999999999999999 555554332                 


Q ss_pred             -CCChhhhccC-----CcEEEEecCCCCc
Q 022295          201 -TTDPESIVRE-----ADIVIAAAGQAMM  223 (299)
Q Consensus       201 -t~~l~~~~~~-----ADIVIsa~g~p~~  223 (299)
                       +.+..+.++.     -|+|+-++|.+.+
T Consensus       210 ~~~~~~e~~kk~~~~~~DvVlD~vg~~~~  238 (347)
T KOG1198|consen  210 KDENVVELIKKYTGKGVDVVLDCVGGSTL  238 (347)
T ss_pred             CCHHHHHHHHhhcCCCccEEEECCCCCcc
Confidence             2344455555     7999988887543

>PRK07576 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.059  Score=49.03  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=33.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+.+|++|+++.++
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~   42 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRS   42 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999998764

>PRK07825 short chain dehydrogenase; Provisional

Probab=94.13  E-value=0.051  Score=49.40  Aligned_cols=37  Identities=24%  Similarity=0.341  Sum_probs=33.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++|++++|.|+|+-+|+.++..|+++|+.|.++.++
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~   38 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLD   38 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999999999999999999999999888654

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.12  E-value=0.076  Score=47.93  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=33.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +++||.++|.|++.-+|+.++..|+++|++|.++.+
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~   40 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGV   40 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence            578999999999999999999999999999988765

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=94.12  E-value=0.052  Score=49.49  Aligned_cols=38  Identities=32%  Similarity=0.506  Sum_probs=34.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~   43 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRN   43 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998888999999999999999988764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.12  E-value=0.11  Score=49.18  Aligned_cols=53  Identities=25%  Similarity=0.377  Sum_probs=41.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCCC-------Ch----------------hhhccCCcEEEEecCCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHTT-------DP----------------ESIVREADIVIAAAGQAM  222 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t~-------~l----------------~~~~~~ADIVIsa~g~p~  222 (299)
                      +|.|||.|. ||.++|..|+.+|  ..|.+++++..       ++                .+.+++||+||.++|.|.
T Consensus         2 kI~IIGaG~-VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~   79 (308)
T cd05292           2 KVAIVGAGF-VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQ   79 (308)
T ss_pred             EEEEECCCH-HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCC
Confidence            699999865 6999999999998  47888875421       01                255889999999999753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06179 short chain dehydrogenase; Provisional

Probab=94.11  E-value=0.12  Score=46.90  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++++++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~   37 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRN   37 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999999999999999999999988764

>PLN02427 UDP-apiose/xylose synthase

Probab=94.11  E-value=0.12  Score=49.81  Aligned_cols=58  Identities=21%  Similarity=0.307  Sum_probs=44.6

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCCCC----------------------------ChhhhccCCc
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSHTT----------------------------DPESIVREAD  212 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~t~----------------------------~l~~~~~~AD  212 (299)
                      |-+++.++|+|.|++|.+|+.++..|+++ |..|..+.+...                            .+.+.++.+|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            55677789999999999999999999998 588887764311                            1335567899


Q ss_pred             EEEEecC
Q 022295          213 IVIAAAG  219 (299)
Q Consensus       213 IVIsa~g  219 (299)
                      +||..++
T Consensus        89 ~ViHlAa   95 (386)
T PLN02427         89 LTINLAA   95 (386)
T ss_pred             EEEEccc
Confidence            9997665

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.10  E-value=0.091  Score=49.97  Aligned_cols=59  Identities=24%  Similarity=0.228  Sum_probs=45.2

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------C------hhhhccCCcEEE
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------D------PESIVREADIVI  215 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~------l~~~~~~ADIVI  215 (299)
                      +.+-.+++|+|.|+++.+|+.++..|+++|++|+++.+...                    |      +.+.++..|.||
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            44567899999999999999999999999999987654311                    1      224456789999


Q ss_pred             EecCC
Q 022295          216 AAAGQ  220 (299)
Q Consensus       216 sa~g~  220 (299)
                      ..++.
T Consensus        85 h~A~~   89 (353)
T PLN02896         85 HVAAS   89 (353)
T ss_pred             ECCcc
Confidence            77764

>PRK09291 short chain dehydrogenase; Provisional

Probab=94.09  E-value=0.083  Score=47.25  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~   35 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQI   35 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999887653

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.09  E-value=0.14  Score=50.71  Aligned_cols=124  Identities=19%  Similarity=0.262  Sum_probs=67.1

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC-hhhhccC--CcEEEEecCCCCcCCCCcc-CCCeEEEEeec
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD-PESIVRE--ADIVIAAAGQAMMIKGSWI-KPGAAVIDVGT  240 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~-l~~~~~~--ADIVIsa~g~p~~i~~~~v-k~gavVIDvg~  240 (299)
                      +.+|+++|+|.|+. |+.+|.+|+++|+.|++.+..... ..+.++.  .-+-+. .|.   .+...+ ....+|+--|+
T Consensus         3 ~~~~~~~v~G~g~~-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~-~g~---~~~~~~~~~d~vv~spgi   77 (445)
T PRK04308          3 FQNKKILVAGLGGT-GISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFY-TGR---LKDALDNGFDILALSPGI   77 (445)
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEE-eCC---CCHHHHhCCCEEEECCCC
Confidence            57899999999986 999999999999999998754321 1111211  011110 011   000001 12345555555


Q ss_pred             cCCCCC---ccCCCceeeccCCchh-hhhh-hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          241 NAVDDS---TKKSGYRLVGDVDFHE-ACKV-AGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       241 ~~~~~~---~~~~g~kl~GDvdf~~-~~~~-a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      ++....   -...|..+.++.++-. ..+. ...+--|-|--|.=|+..|+.++++..
T Consensus        78 ~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~  135 (445)
T PRK04308         78 SERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC  135 (445)
T ss_pred             CCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            432100   0001224667766532 2110 011122558889999999999988754

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=94.07  E-value=0.06  Score=48.03  Aligned_cols=36  Identities=39%  Similarity=0.563  Sum_probs=32.7

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+++|.|.++.+|+.++..|+++|++|.++.++
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~   37 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLN   37 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            578999999999999999999999999999888765

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.05  E-value=0.12  Score=46.58  Aligned_cols=55  Identities=22%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCC---Ce-EEEEcCC----------------CCChhhhccCCcEEEEecCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKAD---AT-VTIVHSH----------------TTDPESIVREADIVIAAAGQA  221 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~g---at-Vtv~~~~----------------t~~l~~~~~~ADIVIsa~g~p  221 (299)
                      +..++.|||.|.+ |..++..|.+.+   .+ +++++++                +.+..+.+.++|+||.+++..
T Consensus         3 ~~~kI~iIG~G~m-g~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~   77 (245)
T PRK07634          3 KKHRILFIGAGRM-AEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS   77 (245)
T ss_pred             CCCeEEEECcCHH-HHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH
Confidence            4578999998885 999999988775   23 6666542                134556788999999998853

>PRK07856 short chain dehydrogenase; Provisional

Probab=94.03  E-value=0.092  Score=47.14  Aligned_cols=37  Identities=24%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~   39 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR   39 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999887654

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=94.03  E-value=0.12  Score=45.98  Aligned_cols=54  Identities=24%  Similarity=0.265  Sum_probs=43.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------ChhhhccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------DPESIVREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------~l~~~~~~ADIVIsa~g~p  221 (299)
                      .++.|||+|+-+|.-++.-+.++|.+||-.-|+..                   .+.+.+..-|+||+|.|.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            37899999999999999999999999998865521                   1235677889999998854

>PRK08589 short chain dehydrogenase; Validated

Probab=94.02  E-value=0.063  Score=49.08  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3689999999998889999999999999999988764

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.02  E-value=0.07  Score=47.44  Aligned_cols=35  Identities=17%  Similarity=0.413  Sum_probs=30.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~  199 (299)
                      .|+.++|+|+|.|+ +|-.++..|...|. ++++++.
T Consensus        18 ~L~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~   53 (197)
T cd01492          18 RLRSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDD   53 (197)
T ss_pred             HHHhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEEC
Confidence            36789999999999 59999999999996 7999963

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.01  E-value=0.14  Score=47.58  Aligned_cols=34  Identities=29%  Similarity=0.290  Sum_probs=30.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +||+++|.|+++.+|+.++..|+++|.+|+++.+
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r   36 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVR   36 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEc
Confidence            4789999999999999999999999999887654

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=94.01  E-value=0.061  Score=48.38  Aligned_cols=36  Identities=28%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +.+|+++|.|.++.+|+.++..|+++|++|.++.++
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~   39 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIK   39 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence            678999999999999999999999999999888754

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.98  E-value=0.087  Score=52.36  Aligned_cols=74  Identities=18%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------------------ChhhhccCCcEEEEec
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------------------DPESIVREADIVIAAA  218 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------------------~l~~~~~~ADIVIsa~  218 (299)
                      -+|.|||-|- ||.|+|..|+. +.+|+.++.+..                             ...+.+++||++|+++
T Consensus         7 mkI~vIGlGy-vGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V   84 (425)
T PRK15182          7 VKIAIIGLGY-VGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV   84 (425)
T ss_pred             CeEEEECcCc-chHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence            5799999877 59999999876 689999875421                             1124578999999999


Q ss_pred             CCCC---------cCC------CCccCCCeEEEEeeccCC
Q 022295          219 GQAM---------MIK------GSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       219 g~p~---------~i~------~~~vk~gavVIDvg~~~~  243 (299)
                      +.|.         .+-      ...+++|++|||-.+-+.
T Consensus        85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~p  124 (425)
T PRK15182         85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYP  124 (425)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            9872         111      134588999999876543

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.96  E-value=0.097  Score=48.76  Aligned_cols=69  Identities=13%  Similarity=0.268  Sum_probs=46.9

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC----CeEEEEcCCC-----------------CChhhhccCCcEEEEecCCCCc---C
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD----ATVTIVHSHT-----------------TDPESIVREADIVIAAAGQAMM---I  224 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g----atVtv~~~~t-----------------~~l~~~~~~ADIVIsa~g~p~~---i  224 (299)
                      ++.|||.|.+ |..++..|.+.|    .+|+++.++.                 .+..+.++++|+||.++....+   +
T Consensus         3 ~I~iIG~G~m-G~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl   81 (277)
T PRK06928          3 KIGFIGYGSM-ADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL   81 (277)
T ss_pred             EEEEECccHH-HHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence            6899998875 999999998887    5677776431                 2344567889999999874322   1


Q ss_pred             C--CCccCCCeEEEEe
Q 022295          225 K--GSWIKPGAAVIDV  238 (299)
Q Consensus       225 ~--~~~vk~gavVIDv  238 (299)
                      .  ...++++.+||.+
T Consensus        82 ~~l~~~l~~~~~ivS~   97 (277)
T PRK06928         82 KDCAPVLTPDRHVVSI   97 (277)
T ss_pred             HHHHhhcCCCCEEEEE
Confidence            1  1235566666654

>PRK06500 short chain dehydrogenase; Provisional

Probab=93.96  E-value=0.063  Score=47.72  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=32.3

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+++|.|+++.+|+.++..|+++|++|.+..++
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~   39 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            578999999999999999999999999998877654

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.96  E-value=0.1  Score=49.62  Aligned_cols=77  Identities=27%  Similarity=0.365  Sum_probs=54.6

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---C------------------CChh--hhccCCcEEEEecCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---T------------------TDPE--SIVREADIVIAAAGQA  221 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---t------------------~~l~--~~~~~ADIVIsa~g~p  221 (299)
                      ..|++|+|+|.|. +|..+++++...|+.|+++.++   .                  .++.  .....+|+||.++|.+
T Consensus       171 ~~g~~vlI~G~G~-vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  249 (355)
T cd08230         171 WNPRRALVLGAGP-IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP  249 (355)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence            4799999999755 6999999999999988887652   1                  1111  1123479999999987


Q ss_pred             CcCC--CCccCCCeEEEEeeccC
Q 022295          222 MMIK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       222 ~~i~--~~~vk~gavVIDvg~~~  242 (299)
                      ..+.  -+.++++..++-+|...
T Consensus       250 ~~~~~~~~~l~~~G~~v~~G~~~  272 (355)
T cd08230         250 PLAFEALPALAPNGVVILFGVPG  272 (355)
T ss_pred             HHHHHHHHHccCCcEEEEEecCC
Confidence            5432  25578887888888643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.95  E-value=0.057  Score=44.57  Aligned_cols=32  Identities=25%  Similarity=0.514  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS  199 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~  199 (299)
                      .++|+|+|.|++ |..++..|+..|. .+++++.
T Consensus         2 ~~~v~iiG~G~v-Gs~va~~L~~~Gv~~i~lvD~   34 (135)
T PF00899_consen    2 NKRVLIIGAGGV-GSEVAKNLARSGVGKITLVDD   34 (135)
T ss_dssp             T-EEEEESTSHH-HHHHHHHHHHHTTSEEEEEES
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHhCCCceeecCC
Confidence            579999999885 9999999999997 7999963

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07814 short chain dehydrogenase; Provisional

Probab=93.95  E-value=0.059  Score=48.86  Aligned_cols=37  Identities=27%  Similarity=0.365  Sum_probs=33.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|.++-+|+.++..|+.+|++|.++.++
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~   43 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAART   43 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999888764

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=93.95  E-value=0.11  Score=47.49  Aligned_cols=52  Identities=23%  Similarity=0.317  Sum_probs=42.0

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC------hhhhccCC--cEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD------PESIVREA--DIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~------l~~~~~~A--DIVIsa~g~  220 (299)
                      +++|+|+++.+|+.++..|+++|..|+++.+...|      +.+.+..+  |+||..+|.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECCcc
Confidence            48999999999999999999999999988775433      34556655  999987774

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.92  E-value=0.15  Score=48.52  Aligned_cols=38  Identities=21%  Similarity=0.241  Sum_probs=33.5

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ..-+++|+|+|.|++|.+|..++..|+++|.+|+.+.+
T Consensus        10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~   47 (348)
T PRK15181         10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN   47 (348)
T ss_pred             cccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            34578899999999999999999999999999887754

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.90  E-value=0.21  Score=46.91  Aligned_cols=94  Identities=26%  Similarity=0.339  Sum_probs=63.5

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCC-------------------CC--
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHT-------------------TD--  203 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t-------------------~~--  203 (299)
                      .++|.....+..++..++ ..|.+|+|.|.| .+|..+++++...|+. |+++.+..                   .+  
T Consensus       144 ~l~~~~~ta~~~l~~~~~-~~g~~vlV~G~G-~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~  221 (339)
T cd08239         144 LLLCGIGTAYHALRRVGV-SGRDTVLVVGAG-PVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQ  221 (339)
T ss_pred             hhcchHHHHHHHHHhcCC-CCCCEEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHH
Confidence            345555555666665554 359999999975 5799999999999998 87765421                   11  


Q ss_pred             -hhhhcc--CCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          204 -PESIVR--EADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       204 -l~~~~~--~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                       +.+.+.  .+|+||.++|.+..+.  -+.++++..++-+|..
T Consensus       222 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         222 EIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCC
Confidence             112222  4799999998765432  3567888788888864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.89  E-value=0.14  Score=47.89  Aligned_cols=76  Identities=16%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCCCChh-----------h-hccCCcEEEEecCCCCcCC--CCcc
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHTTDPE-----------S-IVREADIVIAAAGQAMMIK--GSWI  229 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t~~l~-----------~-~~~~ADIVIsa~g~p~~i~--~~~v  229 (299)
                      ..|++++|+|.|. ||..+++++...|++ |.++..+...+.           + .-..+|+||-++|.+..+.  -+.+
T Consensus       143 ~~~~~vlV~G~G~-vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~l  221 (308)
T TIGR01202       143 VKVLPDLIVGHGT-LGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVRRL  221 (308)
T ss_pred             cCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHHHHHHHHhh
Confidence            4688999999876 699999988889997 445543211111           1 1135799999999876543  3678


Q ss_pred             CCCeEEEEeecc
Q 022295          230 KPGAAVIDVGTN  241 (299)
Q Consensus       230 k~gavVIDvg~~  241 (299)
                      +++..++-+|..
T Consensus       222 ~~~G~iv~~G~~  233 (308)
T TIGR01202       222 AKGGEIVLAGFY  233 (308)
T ss_pred             hcCcEEEEEeec
Confidence            888888888864

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=93.89  E-value=0.094  Score=46.12  Aligned_cols=38  Identities=34%  Similarity=0.488  Sum_probs=33.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ++.+|+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~   39 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE   39 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            35678999999999999999999999999998887653

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=93.88  E-value=0.13  Score=49.10  Aligned_cols=95  Identities=25%  Similarity=0.292  Sum_probs=61.9

Q ss_pred             cccCCHHHHHHHHHhh-CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChh
Q 022295          146 FLPCTPKGCLELLKRS-GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPE  205 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~-~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~  205 (299)
                      -+|+++.-.+.+|.++ +... |.+|+|.|+++.||..+.+++...|+++.+.-+++                   .++.
T Consensus       122 al~~~~~TA~~~l~~~~~l~~-g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~  200 (326)
T COG0604         122 ALPLAGLTAWLALFDRAGLKP-GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFV  200 (326)
T ss_pred             HHHHHHHHHHHHHHHhcCCCC-CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHH
Confidence            3566666667777663 3333 99999999999999999999999996533332221                   1233


Q ss_pred             hhcc------CCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          206 SIVR------EADIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 ~~~~------~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                      +.++      ..|+|+-.+|.+.+- .-..++++..++.+|..
T Consensus       201 ~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         201 EQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             HHHHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecC
Confidence            3322      478888888866542 33456666667777754

>PRK06114 short chain dehydrogenase; Provisional

Probab=93.86  E-value=0.1  Score=46.98  Aligned_cols=37  Identities=24%  Similarity=0.388  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|.++-+|+.++..|+++|++|.++.++
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~   41 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLR   41 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999988764

>PRK06444 prephenate dehydrogenase; Provisional

Probab=93.86  E-value=0.12  Score=46.29  Aligned_cols=59  Identities=12%  Similarity=0.253  Sum_probs=43.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCC-CeEEEEeecc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKP-GAAVIDVGTN  241 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~-gavVIDvg~~  241 (299)
                      +++|||.+|-+|+-++..|.+.|..|+            +++||+||.|++....  .+++++ ..+++|+|.-
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------~~~~DlVilavPv~~~--~~~i~~~~~~v~Dv~Sv   61 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------IKKADHAFLSVPIDAA--LNYIESYDNNFVEISSV   61 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE------------ECCCCEEEEeCCHHHH--HHHHHHhCCeEEecccc
Confidence            689999856679999999999998886            4789999999874321  111211 1368899863

>PLN00106 malate dehydrogenase

Probab=93.86  E-value=0.2  Score=48.05  Aligned_cols=57  Identities=25%  Similarity=0.370  Sum_probs=42.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcC-----------------------CCCChhhhccCCcEEEEecCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHS-----------------------HTTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~-----------------------~t~~l~~~~~~ADIVIsa~g~  220 (299)
                      ..++|+|+|+.|.||..++..|+.++.  ++.+++.                       .+.++.+.+++||+||.+.|.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            346999999945579999999986552  5555542                       233457889999999999996


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        97 ~~   98 (323)
T PLN00106         97 PR   98 (323)
T ss_pred             CC
Confidence            54

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=93.85  E-value=0.11  Score=50.31  Aligned_cols=69  Identities=23%  Similarity=0.343  Sum_probs=51.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC--------CeEEEEcC-----C----------------------------CCChhhh
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD--------ATVTIVHS-----H----------------------------TTDPESI  207 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g--------atVtv~~~-----~----------------------------t~~l~~~  207 (299)
                      +|+|||+|.. |.++|..|...|        .+|++..+     .                            |.++.+.
T Consensus         1 kI~VIGaG~w-GtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea   79 (342)
T TIGR03376         1 RVAVVGSGNW-GTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence            4899998775 999999999888        78888754     1                            2467788


Q ss_pred             ccCCcEEEEecCCCCc---CC--CCccCCCeEEEEe
Q 022295          208 VREADIVIAAAGQAMM---IK--GSWIKPGAAVIDV  238 (299)
Q Consensus       208 ~~~ADIVIsa~g~p~~---i~--~~~vk~gavVIDv  238 (299)
                      +++||+||.|++...+   +.  ..++++++.+|-+
T Consensus        80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~  115 (342)
T TIGR03376        80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC  115 (342)
T ss_pred             HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence            9999999999986432   11  2356777777665

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN00198 anthocyanidin reductase; Provisional

Probab=93.84  E-value=0.17  Score=47.69  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      +..+++|+|.|+++.+|+.++..|+++|++|.++.
T Consensus         6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~   40 (338)
T PLN00198          6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV   40 (338)
T ss_pred             CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence            56789999999999999999999999999987653

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.82  E-value=0.081  Score=51.54  Aligned_cols=35  Identities=29%  Similarity=0.510  Sum_probs=30.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~  199 (299)
                      .+++++|+|+|.|++ |..++..|+..|. ++++++.
T Consensus       132 ~l~~~~VlvvG~GG~-Gs~ia~~La~~Gvg~i~lvD~  167 (376)
T PRK08762        132 RLLEARVLLIGAGGL-GSPAALYLAAAGVGTLGIVDH  167 (376)
T ss_pred             HHhcCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            468899999999995 9999999999997 7888864

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.79  E-value=0.074  Score=49.39  Aligned_cols=31  Identities=19%  Similarity=0.283  Sum_probs=27.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ++|.|||.|.+ |.+++..|+..|..|++++.
T Consensus         4 ~kI~VIG~G~m-G~~ia~~la~~g~~V~~~d~   34 (282)
T PRK05808          4 QKIGVIGAGTM-GNGIAQVCAVAGYDVVMVDI   34 (282)
T ss_pred             cEEEEEccCHH-HHHHHHHHHHCCCceEEEeC
Confidence            57999998775 99999999999999999973

>PRK06139 short chain dehydrogenase; Provisional

Probab=93.79  E-value=0.054  Score=51.70  Aligned_cols=37  Identities=16%  Similarity=0.305  Sum_probs=33.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++++|.++|.|+|+-+|+.++..|+++|++|.++.++
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~   40 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARD   40 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4688999999999889999999999999999998765

>PRK12742 oxidoreductase; Provisional

Probab=93.78  E-value=0.098  Score=46.16  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=31.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      .++||+++|.|+++-+|+.++..|+++|++|.+..+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            367999999999888999999999999999877643

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.77  E-value=0.068  Score=47.44  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=33.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ++++.++|.|+++.+|+.++..|+++|++|.+++++.
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~   41 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE   41 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999999999999999999999999999988753

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.74  E-value=0.086  Score=46.59  Aligned_cols=38  Identities=34%  Similarity=0.451  Sum_probs=33.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE-cCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV-HSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~-~~~t  201 (299)
                      ++.+|+++|+|+++-+|+.++..|+++|++|.+. .++.
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~   40 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE   40 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            4678999999999889999999999999999888 6543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.73  E-value=0.082  Score=46.69  Aligned_cols=37  Identities=32%  Similarity=0.515  Sum_probs=33.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|.++.+|..++..|.++|++|++..++
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~   38 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN   38 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3679999999999999999999999999999888664

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.72  E-value=0.074  Score=47.20  Aligned_cols=37  Identities=32%  Similarity=0.413  Sum_probs=32.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++|+++|.|+++.+|+.++..|.++|++|.++.++
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~   40 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGL   40 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence            3678999999998889999999999999998887654

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=93.71  E-value=0.15  Score=49.82  Aligned_cols=111  Identities=16%  Similarity=0.165  Sum_probs=65.1

Q ss_pred             cEEEEEcCCccchHHHHH-HHhhCCCe---EEEEcCC-C--------------CCh--hhhccCCcEEEEecCCC--CcC
Q 022295          168 KRAVVVGRSNIVGLPVSL-LLLKADAT---VTIVHSH-T--------------TDP--ESIVREADIVIAAAGQA--MMI  224 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~-lL~~~gat---Vtv~~~~-t--------------~~l--~~~~~~ADIVIsa~g~p--~~i  224 (299)
                      .+|.|||++|.||+-+.. +|.+.+..   +....+. +              .++  .+..+++|++|.|+|.-  .-+
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~~~   81 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTNEV   81 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHHHH
Confidence            378999999999999997 66666654   5554331 0              011  13457899999998742  113


Q ss_pred             CCCccCCC--eEEEEeeccCCCCCccCCCceeeccCCchhhhhh--hc--eeccCCCCccHHHHHHH
Q 022295          225 KGSWIKPG--AAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV--AG--CVTPVPGGVGPMTVAML  285 (299)
Q Consensus       225 ~~~~vk~g--avVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~--a~--~iTPVPGGVGp~T~a~L  285 (299)
                      -+...+.|  ++|||.+..+.-+++-+   -.+-.|+-+.+...  .+  .+. .||   -.|++|+
T Consensus        82 ~~~~~~aG~~~~VID~Ss~fR~~~dvp---lvvPEvN~e~i~~~~~~g~~iIa-nPn---C~tt~~~  141 (369)
T PRK06598         82 YPKLRAAGWQGYWIDAASTLRMKDDAI---IILDPVNRDVIDDALANGVKTFV-GGN---CTVSLML  141 (369)
T ss_pred             HHHHHhCCCCeEEEECChHHhCCCCCc---EEcCCcCHHHHHhhhhcCCCEEE-cCC---hHHHHHH
Confidence            33445668  78999997754332211   23444554444432  12  122 453   5666666

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.71  E-value=0.12  Score=50.47  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=34.9

Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+...+|++++|+|+++.+|+.++..|+++|..|+.+.+.
T Consensus        54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~   93 (390)
T PLN02657         54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVARE   93 (390)
T ss_pred             cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence            3556788999999999999999999999999998888654

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.66  E-value=0.18  Score=48.33  Aligned_cols=94  Identities=19%  Similarity=0.222  Sum_probs=58.9

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-------------------CCChhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-------------------TTDPES  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-------------------t~~l~~  206 (299)
                      ++|.....+..+.+..---.|.+|+|.|.| .+|..+++++...|+ .|+++.+.                   ..++.+
T Consensus       172 ~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G-~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~  250 (371)
T cd08281         172 FGCAVLTGVGAVVNTAGVRPGQSVAVVGLG-GVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVE  250 (371)
T ss_pred             hcchHHHHHHHHHhccCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHH
Confidence            444433334433222222368999999975 579999999999998 57766432                   112222


Q ss_pred             h----cc-CCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          207 I----VR-EADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       207 ~----~~-~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                      .    +. .+|+||-++|.+..+.  -+.++++..++-+|..
T Consensus       251 ~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~  292 (371)
T cd08281         251 QVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLP  292 (371)
T ss_pred             HHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccC
Confidence            1    11 4799999998765433  2457887778888864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=93.63  E-value=0.22  Score=45.84  Aligned_cols=95  Identities=16%  Similarity=0.142  Sum_probs=65.0

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-----------------C--Ch---
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-----------------T--DP---  204 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-----------------~--~l---  204 (299)
                      +|+.+...+..+...+....|.+++|.|.++.+|..++.++..+|+.|++..+..                 .  +.   
T Consensus       119 ~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  198 (323)
T cd05282         119 LYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQR  198 (323)
T ss_pred             HhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHH
Confidence            3444555555565555556789999999988899999999999999877654321                 1  11   


Q ss_pred             -hhhc--cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          205 -ESIV--READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       205 -~~~~--~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                       .+.+  +..|+++.++|.+... -.++++++..++++|..
T Consensus       199 ~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~  239 (323)
T cd05282         199 VKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLL  239 (323)
T ss_pred             HHHHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccC
Confidence             1122  3579999888865432 23567888889998864

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=93.63  E-value=0.32  Score=44.15  Aligned_cols=95  Identities=20%  Similarity=0.212  Sum_probs=62.9

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CCh---
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDP---  204 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l---  204 (299)
                      ++|....++..+.+...-..|++++|.|.++.+|..++.++...|++|++..+..                   .+.   
T Consensus       125 ~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  204 (325)
T cd08253         125 LGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADR  204 (325)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHH
Confidence            3444455555555544445789999999877789999999999999887764421                   111   


Q ss_pred             -hhhc--cCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          205 -ESIV--READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       205 -~~~~--~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                       .+.+  +..|+++.++|...+ ...++++++..++++|.+
T Consensus       205 ~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~  245 (325)
T cd08253         205 ILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSG  245 (325)
T ss_pred             HHHHcCCCceEEEEECCchHHHHHHHHhhCCCCEEEEEeec
Confidence             1222  247888888776543 223567777788888864

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.62  E-value=0.3  Score=48.15  Aligned_cols=157  Identities=18%  Similarity=0.254  Sum_probs=97.5

Q ss_pred             HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCC---C---CCHHHHHccCCccccCCCCCc
Q 022295           58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK---H---INEEKVLGEISLEKDVDGFHP  131 (299)
Q Consensus        58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~---~---i~~~~i~~~i~p~KDVDg~~~  131 (299)
                      +--...|+++||+              +.+.|+..|.-|.   +++++|=|.   |   +|+-.+ -.-+++..... ..
T Consensus       230 NElali~~~~GId--------------vwevIeaAnt~P~---~~~~~PGpGvGGHCIpvDP~fl-~~ka~~yg~~~-rl  290 (436)
T COG0677         230 NELALICNAMGID--------------VWEVIEAANTKPR---VNIFYPGPGVGGHCIPVDPYFL-TWKAPEYGLPA-RL  290 (436)
T ss_pred             HHHHHHHHHhCCc--------------HHHHHHHhccCCc---eeecCCCCCCCCcccccCchhe-eecccccCCch-HH
Confidence            3345556666664              5577888898876   788888763   2   333222 11222222110 11


Q ss_pred             ccccccccCCCCCccccC-CHHHHHHHHHhhCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCC-
Q 022295          132 LNIGKLAMKGRDPLFLPC-TPKGCLELLKRSGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSH-  200 (299)
Q Consensus       132 ~n~g~l~~g~~~~~~~Pc-T~~av~~ll~~~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~-  200 (299)
                      .-+.+-.+    ++ .|- ...-+.+.|.+.+..++|.+|+|+|-.         +.=...+..+|.+.|+.|.+++-+ 
T Consensus       291 I~tAreIN----~~-mP~~Vv~~~~~al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v  365 (436)
T COG0677         291 IRTAREIN----DS-MPRHVVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYV  365 (436)
T ss_pred             HHHHHHHh----cc-CCHHHHHHHHHHHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCC
Confidence            11222221    11 121 123344555589999999999999921         112567888999999999988643 


Q ss_pred             ------------C-CChhhhccCCcEEEEecCCCCc--CCCCccC-CCeEEEEe
Q 022295          201 ------------T-TDPESIVREADIVIAAAGQAMM--IKGSWIK-PGAAVIDV  238 (299)
Q Consensus       201 ------------t-~~l~~~~~~ADIVIsa~g~p~~--i~~~~vk-~gavVIDv  238 (299)
                                  | ..+++.++.+|+||-+|-...|  ++.+.+. ...+|+|.
T Consensus       366 ~~~~~~~~~~~~~~~~~e~al~~~D~vVi~tDH~~fk~id~~~i~~~~~vivDt  419 (436)
T COG0677         366 KELPTREDGEGVTLAILEEALKDADAVVIATDHSEFKEIDYEAIGKEAKVIVDT  419 (436)
T ss_pred             CcchhhhhccccchhhHHHHhccCCEEEEEeccHHhhcCCHHHhccCCcEEEEC
Confidence                        2 4567889999999999988777  7777774 46788884

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=93.61  E-value=0.1  Score=45.06  Aligned_cols=37  Identities=41%  Similarity=0.566  Sum_probs=31.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++||+|+|||.|.. +--++..|++.|.+|+++.|+.
T Consensus       164 ~~~~k~V~VVG~G~S-A~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  164 DFKGKRVVVVGGGNS-AVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             GCTTSEEEEE--SHH-HHHHHHHHTTTCSEEEEEESS-
T ss_pred             hcCCCcEEEEcChHH-HHHHHHHHHhhCCEEEEEecCC
Confidence            578999999998887 9999999999999999998763

...

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.59  E-value=0.19  Score=47.75  Aligned_cols=54  Identities=33%  Similarity=0.469  Sum_probs=41.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC----------------------------CChhhhccCCcEEEEe
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT----------------------------TDPESIVREADIVIAA  217 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t----------------------------~~l~~~~~~ADIVIsa  217 (299)
                      .+|.|+|+++.||..++..|+..|.  +|+++.++.                            .+ .+.+++||+||.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence            3799999866689999999998874  477776421                            12 2558999999999


Q ss_pred             cCCCC
Q 022295          218 AGQAM  222 (299)
Q Consensus       218 ~g~p~  222 (299)
                      .|.|.
T Consensus        80 ag~p~   84 (309)
T cd05294          80 AGVPR   84 (309)
T ss_pred             cCCCC
Confidence            99765

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.59  E-value=0.2  Score=47.81  Aligned_cols=53  Identities=25%  Similarity=0.431  Sum_probs=40.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-------------------------CChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-------------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      .+|.|||+|. ||..+|..|+..+.  ++.+++.+.                         .+. +.+++|||||.+.|.
T Consensus         4 ~Ki~IiGaG~-VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~~~~~adivvitaG~   81 (312)
T cd05293           4 NKVTVVGVGQ-VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-SVTANSKVVIVTAGA   81 (312)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-HHhCCCCEEEECCCC
Confidence            5899999866 69999999988873  577776431                         233 458999999998996


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        82 ~~   83 (312)
T cd05293          82 RQ   83 (312)
T ss_pred             CC
Confidence            53

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=93.56  E-value=0.18  Score=48.18  Aligned_cols=53  Identities=28%  Similarity=0.463  Sum_probs=40.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC-C-eEEEEcCCC--------------------------CChhhhccCCcEEEEecC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD-A-TVTIVHSHT--------------------------TDPESIVREADIVIAAAG  219 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g-a-tVtv~~~~t--------------------------~~l~~~~~~ADIVIsa~g  219 (299)
                      ++|+|||+|+ ||.++|.+|+.++ + .+.+.+...                          .+ .+.++.||+||-+.|
T Consensus         1 ~KVaviGaG~-VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitAG   78 (313)
T COG0039           1 MKVAVIGAGN-VGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITAG   78 (313)
T ss_pred             CeEEEECCCh-HHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCC-hhhhcCCCEEEEeCC
Confidence            4799999966 6999999998887 3 677775330                          12 477999999998888


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      .|.
T Consensus        79 ~pr   81 (313)
T COG0039          79 VPR   81 (313)
T ss_pred             CCC
Confidence            653

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=93.56  E-value=0.11  Score=50.77  Aligned_cols=34  Identities=26%  Similarity=0.525  Sum_probs=30.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~  198 (299)
                      .|++++|+|+|.|++ |.+++..|+..|. ++++++
T Consensus        38 ~l~~~~VliiG~Ggl-G~~v~~~La~~Gvg~i~ivD   72 (370)
T PRK05600         38 RLHNARVLVIGAGGL-GCPAMQSLASAGVGTITLID   72 (370)
T ss_pred             HhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEe
Confidence            468899999999996 9999999999995 899986

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.56  E-value=0.076  Score=47.12  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=32.3

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|++++|+|.++.+|..++..|.++|++|+++.+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~   38 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLN   38 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            689999999998888999999999999998888754

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=93.54  E-value=0.12  Score=46.52  Aligned_cols=37  Identities=30%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~   41 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS   41 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3689999999999999999999999999999988764

>PRK05875 short chain dehydrogenase; Provisional

Probab=93.54  E-value=0.074  Score=48.34  Aligned_cols=37  Identities=27%  Similarity=0.340  Sum_probs=33.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++++|+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~   40 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN   40 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4789999999998889999999999999999988654

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.54  E-value=0.077  Score=46.84  Aligned_cols=36  Identities=31%  Similarity=0.468  Sum_probs=32.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +.+++++|+|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~   39 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARD   39 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence            468999999999999999999999999999988764

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=93.52  E-value=0.2  Score=47.69  Aligned_cols=77  Identities=26%  Similarity=0.405  Sum_probs=58.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCc-----
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMM-----  223 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~-----  223 (299)
                      ++-+-+++=-||-|.+ |.+++..|.+.|.+||+.+++-              ....|..+.+|+||+.++.|.-     
T Consensus        31 ~~~s~~~iGFIGLG~M-G~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~  109 (327)
T KOG0409|consen   31 ITPSKTRIGFIGLGNM-GSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVL  109 (327)
T ss_pred             CCcccceeeEEeeccc-hHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHh
Confidence            3446788999999987 9999999999999999999762              2345889999999999998762     


Q ss_pred             CCCC----ccCCCeEE-EEeec
Q 022295          224 IKGS----WIKPGAAV-IDVGT  240 (299)
Q Consensus       224 i~~~----~vk~gavV-IDvg~  240 (299)
                      ....    -+++|... ||..+
T Consensus       110 ~g~~Gvl~g~~~g~~~~vDmST  131 (327)
T KOG0409|consen  110 LGKSGVLSGIRPGKKATVDMST  131 (327)
T ss_pred             cCCCcceeeccCCCceEEeccc
Confidence            2221    13466555 78764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.51  E-value=0.13  Score=49.75  Aligned_cols=54  Identities=13%  Similarity=0.145  Sum_probs=42.3

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------C------hhhhccCCcEEEEecC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------D------PESIVREADIVIAAAG  219 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~------l~~~~~~ADIVIsa~g  219 (299)
                      ++|+|+|.|++|.+|+.++..|.++|..|+.+.+...               |      +...++.+|+||..++
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa   94 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA   94 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence            6799999999999999999999999999988764311               1      1234567899997665

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=93.48  E-value=0.13  Score=45.26  Aligned_cols=37  Identities=30%  Similarity=0.371  Sum_probs=32.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++++|+++|.|.++-+|+.++..|+++|++|+++.++
T Consensus         2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~   38 (248)
T PRK05557          2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS   38 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4688999999999999999999999999999777554

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=93.44  E-value=0.085  Score=52.92  Aligned_cols=76  Identities=26%  Similarity=0.354  Sum_probs=53.8

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhhhccCCcEEEEecCCC--Cc
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPESIVREADIVIAAAGQA--MM  223 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~~~~~ADIVIsa~g~p--~~  223 (299)
                      |+||+|+|||.|.. |+.-|.-|...|..|++.-|.                   ..++.+.++.||+|+..++..  +.
T Consensus        34 LkgKtIaIIGyGSq-G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~~  112 (487)
T PRK05225         34 LKGKKIVIVGCGAQ-GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSD  112 (487)
T ss_pred             hCCCEEEEEccCHH-HHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHHHH
Confidence            68999999999886 998888888889888855432                   124678899999999998842  12


Q ss_pred             CCC---CccCCCeE-EEEeecc
Q 022295          224 IKG---SWIKPGAA-VIDVGTN  241 (299)
Q Consensus       224 i~~---~~vk~gav-VIDvg~~  241 (299)
                      +..   ..+|+|++ .+-=|+|
T Consensus       113 v~~~i~p~LK~Ga~L~fsHGFn  134 (487)
T PRK05225        113 VVRAVQPLMKQGAALGYSHGFN  134 (487)
T ss_pred             HHHHHHhhCCCCCEEEecCCce
Confidence            322   34577754 3333444

>PRK06198 short chain dehydrogenase; Provisional

Probab=93.44  E-value=0.097  Score=46.98  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=33.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t  201 (299)
                      .+++|+++|.|+++-+|+.++..|.++|++ |+++.++.
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~   41 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA   41 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence            368899999999999999999999999998 88887653

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.42  E-value=0.53  Score=46.57  Aligned_cols=75  Identities=9%  Similarity=0.148  Sum_probs=55.4

Q ss_pred             CCCcCCcEEEEEcCC---------ccchHHHHHHHhhCC-CeEEEEcCC-------------CCChhhhccCCcEEEEec
Q 022295          162 GVTIKGKRAVVVGRS---------NIVGLPVSLLLLKAD-ATVTIVHSH-------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       162 ~~~l~gk~vvViG~s---------~~vG~pla~lL~~~g-atVtv~~~~-------------t~~l~~~~~~ADIVIsa~  218 (299)
                      +.+++|++|.|+|-+         +.-...++..|.++| +.|.+.+..             ..++.+.++.||.||..|
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            677999999999932         223678999999996 999886532             135678899999999999


Q ss_pred             CCCCcCCCCc--cCCCeEEEE
Q 022295          219 GQAMMIKGSW--IKPGAAVID  237 (299)
Q Consensus       219 g~p~~i~~~~--vk~gavVID  237 (299)
                      ..+.|-..+|  ++. -+|||
T Consensus       395 ~~~~~~~~~~~~~~~-~~v~D  414 (415)
T PRK11064        395 DHSQFKAINGDNVHQ-QWVVD  414 (415)
T ss_pred             CCHHhccCCHHHhCC-CEEEe
Confidence            9988743332  543 36777

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.40  E-value=0.1  Score=52.94  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=28.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|.|||.|.+ |.++|..|+..|..|++.+++
T Consensus         6 ~kV~VIGaG~M-G~gIA~~la~aG~~V~l~d~~   37 (503)
T TIGR02279         6 VTVAVIGAGAM-GAGIAQVAASAGHQVLLYDIR   37 (503)
T ss_pred             cEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence            67999998775 999999999999999999754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.39  E-value=0.51  Score=46.90  Aligned_cols=77  Identities=21%  Similarity=0.268  Sum_probs=55.3

Q ss_pred             hCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCC-CC-------C---hhh-hccCCcEEEEecC
Q 022295          161 SGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSH-TT-------D---PES-IVREADIVIAAAG  219 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~-t~-------~---l~~-~~~~ADIVIsa~g  219 (299)
                      ++.+++|++|.|+|-+         +.-+..++..|..+|+.|.+.+-. ..       .   +.. .+..||.||..|.
T Consensus       308 ~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~  387 (425)
T PRK15182        308 KGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVG  387 (425)
T ss_pred             cCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccC
Confidence            3567899999999932         234789999999999999988754 10       1   112 3578999999999


Q ss_pred             CCCc--CCCCcc----CCCeEEEE
Q 022295          220 QAMM--IKGSWI----KPGAAVID  237 (299)
Q Consensus       220 ~p~~--i~~~~v----k~gavVID  237 (299)
                      .+.|  ++.+++    +...+|||
T Consensus       388 h~~f~~~~~~~~~~~~~~~~~iiD  411 (425)
T PRK15182        388 HQQFKQMGSEDIRGFGKDKHVLYD  411 (425)
T ss_pred             CHHhhcCCHHHHHHhcCCCCEEEE
Confidence            9887  443344    32358999

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.39  E-value=0.12  Score=46.65  Aligned_cols=36  Identities=22%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             cCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||.++|.|+|  .-+|+.+|..|+++|++|.++.++
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            689999999997  345999999999999999988654

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.37  E-value=0.2  Score=47.78  Aligned_cols=94  Identities=27%  Similarity=0.250  Sum_probs=60.1

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCC-------------------CCChh-
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSH-------------------TTDPE-  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~-------------------t~~l~-  205 (299)
                      ++|...+.+..+....---.|.+|+|.|.| .+|..+++++...|++ |+.+.+.                   ..+.. 
T Consensus       157 l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g-~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~  235 (358)
T TIGR03451       157 LGCGVMAGLGAAVNTGGVKRGDSVAVIGCG-GVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVE  235 (358)
T ss_pred             hcccchhhHHHHHhccCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHH
Confidence            444444434333332223468999999975 5799999999999985 7666432                   11221 


Q ss_pred             ---hhc--cCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          206 ---SIV--READIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 ---~~~--~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                         +.+  +.+|+||.++|.+..+.  -+.+++|..++-+|..
T Consensus       236 ~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       236 AIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCC
Confidence               222  24799999999765432  2457888888888864

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.37  E-value=0.12  Score=47.48  Aligned_cols=36  Identities=19%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             cCCcEEEEEcCCc--cchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSN--IVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~--~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||.++|.|+|.  -+|+.+|..|+++|++|.++.++
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~   42 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG   42 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence            6899999999983  35999999999999999988653

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.36  E-value=0.14  Score=45.35  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=32.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ++++|+++|.|.++-+|+.++..|+++|++|.++.+
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~   37 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA   37 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence            467899999999999999999999999999887754

>PLN02214 cinnamoyl-CoA reductase

Probab=93.36  E-value=0.2  Score=47.63  Aligned_cols=35  Identities=23%  Similarity=0.205  Sum_probs=31.1

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +++|+|+|.|+++.+|+.++..|+++|..|+.+.+
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r   42 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR   42 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            57899999999999999999999999998877644

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.35  E-value=0.38  Score=47.46  Aligned_cols=85  Identities=20%  Similarity=0.181  Sum_probs=61.5

Q ss_pred             HHHHHHHHhhCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhc
Q 022295          152 KGCLELLKRSGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIV  208 (299)
Q Consensus       152 ~av~~ll~~~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~  208 (299)
                      .-+.+++..+.- ++||++.|.|-+         +.-..+++..|..+||+|.+.+..              ..++.+.+
T Consensus       296 ~~~~~~i~~~~~-l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~  374 (414)
T COG1004         296 DKLAEKILNHLG-LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEAL  374 (414)
T ss_pred             HHHHHHHHHhcC-CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHH
Confidence            334444443333 999999999922         223678999999999999998632              24677899


Q ss_pred             cCCcEEEEecCCCCcCCCCcc---CCCeEEEE
Q 022295          209 READIVIAAAGQAMMIKGSWI---KPGAAVID  237 (299)
Q Consensus       209 ~~ADIVIsa~g~p~~i~~~~v---k~gavVID  237 (299)
                      +.||++|..|.+..|-..+|-   -++.+|+|
T Consensus       375 ~~aDaivi~tew~ef~~~d~~~~~m~~~~v~D  406 (414)
T COG1004         375 KGADAIVINTEWDEFRDLDFEKLLMKTPVVID  406 (414)
T ss_pred             hhCCEEEEeccHHHHhccChhhhhccCCEEEe
Confidence            999999999999887655543   24567777

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.35  E-value=0.14  Score=46.55  Aligned_cols=38  Identities=18%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             CCcCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+|  .-+|+.+|..|+++|++|.++.++
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~   45 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLN   45 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999987  235999999999999999888654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.33  E-value=0.13  Score=49.92  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=30.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~  198 (299)
                      .|++++|+|+|.|+. |.+++..|+..|. ++++++
T Consensus        25 ~L~~~~VlivG~GGl-Gs~~a~~La~~Gvg~i~lvD   59 (355)
T PRK05597         25 SLFDAKVAVIGAGGL-GSPALLYLAGAGVGHITIID   59 (355)
T ss_pred             HHhCCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEe
Confidence            467899999999996 9999999999995 788886

>PRK05086 malate dehydrogenase; Provisional

Probab=93.32  E-value=0.23  Score=47.30  Aligned_cols=55  Identities=25%  Similarity=0.424  Sum_probs=39.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhh-CC--CeEEEEcCC-----------------------CCChhhhccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLK-AD--ATVTIVHSH-----------------------TTDPESIVREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~-~g--atVtv~~~~-----------------------t~~l~~~~~~ADIVIsa~g~p  221 (299)
                      ++++|||+++.||..++..|.. .+  ..++++.++                       ..++.+.++++|+||.+.|.|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            4799999966689999987744 22  355665421                       124457789999999999975


Q ss_pred             C
Q 022295          222 M  222 (299)
Q Consensus       222 ~  222 (299)
                      +
T Consensus        81 ~   81 (312)
T PRK05086         81 R   81 (312)
T ss_pred             C
Confidence            4

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=93.32  E-value=0.13  Score=45.64  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=32.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+++|.|+++.+|+.++..|+++|++|.+..++
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~   36 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLN   36 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            578999999999999999999999999999887543

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PLN02778 3,5-epimerase/4-reductase

Probab=93.31  E-value=0.24  Score=46.40  Aligned_cols=54  Identities=15%  Similarity=0.167  Sum_probs=40.9

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---hhhhcc--CCcEEEEecCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---PESIVR--EADIVIAAAGQ  220 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---l~~~~~--~ADIVIsa~g~  220 (299)
                      .++|+|.|++|.+|..++..|.++|.+|+.....-.+   +...++  +.|+||.+++.
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~   67 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGV   67 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcc
Confidence            4789999999999999999999999998765433223   223333  68999977663

>PRK06197 short chain dehydrogenase; Provisional

Probab=93.30  E-value=0.074  Score=49.48  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=32.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~   49 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN   49 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998889999999999999998877653

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=93.29  E-value=0.28  Score=47.28  Aligned_cols=96  Identities=22%  Similarity=0.249  Sum_probs=63.4

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCCC----------------CC--h-hhhccCCcEEEEecCC--CC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSHT----------------TD--P-ESIVREADIVIAAAGQ--AM  222 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~t----------------~~--l-~~~~~~ADIVIsa~g~--p~  222 (299)
                      +++|.|+|+.|.||+-+..+|.+++.   .+.+..|..                .+  . ....++.||++++.|.  ..
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~   80 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK   80 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHH
Confidence            36899999999999999999998763   244443321                01  0 1235579999999974  22


Q ss_pred             cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhh
Q 022295          223 MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK  265 (299)
Q Consensus       223 ~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~  265 (299)
                      -+-+...+.|.+|||-.....-+++-+   -++--|+.+...+
T Consensus        81 ~~~p~~~~~G~~VIdnsSa~Rm~~DVP---LVVPeVN~~~l~~  120 (334)
T COG0136          81 EVEPKAAEAGCVVIDNSSAFRMDPDVP---LVVPEVNPEHLID  120 (334)
T ss_pred             HHHHHHHHcCCEEEeCCcccccCCCCC---EecCCcCHHHHHh
Confidence            355566788999999887654333221   3566677655444

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.29  E-value=0.17  Score=49.74  Aligned_cols=53  Identities=34%  Similarity=0.439  Sum_probs=44.6

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------------CCChhhhccCCcEE
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------------TTDPESIVREADIV  214 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------------t~~l~~~~~~ADIV  214 (299)
                      +++|+|.|= ||-..+..|++.|..|+.++..                                  |.|.++..++||++
T Consensus         2 kI~viGtGY-VGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           2 KITVIGTGY-VGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             ceEEECCch-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            689999655 7999999999999999988632                                  45777889999999


Q ss_pred             EEecCCCC
Q 022295          215 IAAAGQAM  222 (299)
Q Consensus       215 Isa~g~p~  222 (299)
                      |-|+|.|.
T Consensus        81 fIavgTP~   88 (414)
T COG1004          81 FIAVGTPP   88 (414)
T ss_pred             EEEcCCCC
Confidence            99999764

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.29  E-value=0.16  Score=46.17  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=31.0

Q ss_pred             CcCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +++||.++|.|++  .-+|+.+|..|+++|++|.++.+
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r   41 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYA   41 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence            5789999999985  33599999999999999998854

>PLN02253 xanthoxin dehydrogenase

Probab=93.28  E-value=0.095  Score=47.80  Aligned_cols=37  Identities=32%  Similarity=0.404  Sum_probs=33.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~   51 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ   51 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4689999999999999999999999999999888643

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.27  E-value=0.21  Score=49.11  Aligned_cols=106  Identities=19%  Similarity=0.256  Sum_probs=66.5

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChh--------------hhccCCcEEEEecCCCCcCCCCc---
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPE--------------SIVREADIVIAAAGQAMMIKGSW---  228 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~--------------~~~~~ADIVIsa~g~p~~i~~~~---  228 (299)
                      ..++|+|+|-|.+ |+.+|++|.++|++|+.++.+...+.              ....++|++|...|.+..  .++   
T Consensus         2 ~~~~i~iiGlG~~-G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~--~~~l~~   78 (418)
T PRK00683          2 GLQRVVVLGLGVT-GKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKE--HPWVQA   78 (418)
T ss_pred             CCCeEEEEEECHH-HHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCC--cHHHHH
Confidence            3478999999997 99999999999999999986533211              113567888877775421  112   


Q ss_pred             -cCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhh-h-hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          229 -IKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK-V-AGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       229 -vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~-~-a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                       .+.|+.                   ++.|.++.-... . ....--|-|-.|.=|+.-|+.++++..
T Consensus        79 A~~~g~~-------------------vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~  127 (418)
T PRK00683         79 AIASHIP-------------------VVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL  127 (418)
T ss_pred             HHHCCCc-------------------EEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence             233432                   333333211100 0 000112558899999999999998764

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.26  E-value=0.18  Score=47.67  Aligned_cols=51  Identities=27%  Similarity=0.464  Sum_probs=40.3

Q ss_pred             EEEEcCCccchHHHHHHHhhCC--CeEEEEcCCC-------------------------CChhhhccCCcEEEEecCCCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHT-------------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      +.|||+|. ||.++|..|+..|  .++++++.+.                         .+ .+.+++||+||.++|.|.
T Consensus         1 i~iiGaG~-VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGAGN-VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR   78 (300)
T ss_pred             CEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence            47999987 6999999999888  4688887431                         12 367899999999999764

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.26  E-value=0.12  Score=52.59  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=28.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|.|||.|.+ |.++|..|+..|..|++.+++
T Consensus         8 ~~V~VIGaG~M-G~gIA~~la~aG~~V~l~D~~   39 (507)
T PRK08268          8 ATVAVIGAGAM-GAGIAQVAAQAGHTVLLYDAR   39 (507)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence            68999998775 999999999999999999754

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=93.24  E-value=0.096  Score=50.73  Aligned_cols=111  Identities=25%  Similarity=0.422  Sum_probs=63.4

Q ss_pred             EEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-------------------------CChhhhccCCcEEEEecCCCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-------------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      |+|+|. |.+|+.++..|++.+-  +|+++.++.                         ..+.+.++++|+||+++|...
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch
Confidence            688998 5579999998888863  788887541                         126678999999999998652


Q ss_pred             -c-CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCC-CCccHHHHHHHHHHHHHHHH
Q 022295          223 -M-IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVP-GGVGPMTVAMLLRNTLDGAK  294 (299)
Q Consensus       223 -~-i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVP-GGVGp~T~a~L~~n~v~a~~  294 (299)
                       . +-...++-|.-.+|.++-.  .       .+   -.+++.++.++. |=++ =|.-|--+.+|...+++.+.
T Consensus        80 ~~~v~~~~i~~g~~yvD~~~~~--~-------~~---~~l~~~a~~~g~-~~l~~~G~~PGl~~~~a~~~~~~~~  141 (386)
T PF03435_consen   80 GEPVARACIEAGVHYVDTSYVT--E-------EM---LALDEEAKEAGV-TALPGCGFDPGLSNLLARYAADELD  141 (386)
T ss_dssp             HHHHHHHHHHHT-EEEESS-HH--H-------HH---HHCHHHHHHTTS-EEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCCeeccchhH--H-------HH---HHHHHHHHhhCC-EEEeCcccccchHHHHHHHHHHHhh
Confidence             1 3334456688888955410  0       00   012333333332 2222 25556666777776665543

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=93.23  E-value=0.11  Score=46.02  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=32.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++++|+++|.|+++.+|+.++..|+++|+.|++..++
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~   39 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTR   39 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            4688999999999999999999999999988776544

>PRK08643 acetoin reductase; Validated

Probab=93.23  E-value=0.1  Score=46.80  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ||.++|+|+++-+|+.++..|+++|++|.++.++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~   35 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYN   35 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            7899999999999999999999999999888654

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.22  E-value=0.14  Score=47.92  Aligned_cols=39  Identities=31%  Similarity=0.331  Sum_probs=35.0

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..+++||.++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~   45 (306)
T PRK07792          7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA   45 (306)
T ss_pred             CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            467899999999999999999999999999999888653

>PRK12827 short chain dehydrogenase; Provisional

Probab=93.18  E-value=0.15  Score=45.03  Aligned_cols=35  Identities=20%  Similarity=0.423  Sum_probs=31.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      ++++++++|.|+++.+|+.++..|+++|++|++..
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~   37 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLD   37 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence            36789999999999999999999999999988754

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.16  E-value=0.44  Score=48.12  Aligned_cols=83  Identities=19%  Similarity=0.177  Sum_probs=0.0

Q ss_pred             HHHHHHhhCCCcCCcEEEEEc----------CCccchHHHHHHHhhCCCeEEEEcCC-----------------------
Q 022295          154 CLELLKRSGVTIKGKRAVVVG----------RSNIVGLPVSLLLLKADATVTIVHSH-----------------------  200 (299)
Q Consensus       154 v~~ll~~~~~~l~gk~vvViG----------~s~~vG~pla~lL~~~gatVtv~~~~-----------------------  200 (299)
                      +-++.+.+.-+++|++|.|+|          |.-. ...++..|.++|++|.+.+-.                       
T Consensus       311 v~~~~~~l~~~~~~~~VavlGlafK~~tdD~R~Sp-a~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~  389 (473)
T PLN02353        311 VNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETP-AIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHL  389 (473)
T ss_pred             HHHHHHHhhcccCCCEEEEEeeeecCCCCccccCh-HHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccc


Q ss_pred             -------------CCChhhhccCCcEEEEecCCCCc--CC----CCccCCCeEEEE
Q 022295          201 -------------TTDPESIVREADIVIAAAGQAMM--IK----GSWIKPGAAVID  237 (299)
Q Consensus       201 -------------t~~l~~~~~~ADIVIsa~g~p~~--i~----~~~vk~gavVID  237 (299)
                                   ..++.+.++.||+||.+|..+.|  ++    .+.+++..+|||
T Consensus       390 ~~~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD  445 (473)
T PLN02353        390 QPMSPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFD  445 (473)
T ss_pred             cccccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEE

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.15  E-value=0.14  Score=52.76  Aligned_cols=36  Identities=25%  Similarity=0.123  Sum_probs=32.0

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn  113 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRS  113 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            478999999998889999999999999999887654

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.09  E-value=0.14  Score=56.10  Aligned_cols=39  Identities=15%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             hhhhccCCcEEEEecC----CCCcCCCC-c---cCCCe----EEEEeeccC
Q 022295          204 PESIVREADIVIAAAG----QAMMIKGS-W---IKPGA----AVIDVGTNA  242 (299)
Q Consensus       204 l~~~~~~ADIVIsa~g----~p~~i~~~-~---vk~ga----vVIDvg~~~  242 (299)
                      ++++++.||++|+++-    .|.+|+.+ |   +|+|.    +|+||.++.
T Consensus       291 ~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs~D~  341 (1042)
T PLN02819        291 HEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCDI  341 (1042)
T ss_pred             HHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEccCC
Confidence            3568899999999884    47789888 4   36787    999999864

>PRK08278 short chain dehydrogenase; Provisional

Probab=93.08  E-value=0.15  Score=46.74  Aligned_cols=37  Identities=24%  Similarity=0.444  Sum_probs=33.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKT   39 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            3688999999999999999999999999999888754

>PRK09135 pteridine reductase; Provisional

Probab=93.08  E-value=0.15  Score=45.08  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=32.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..+++++|.|+++.+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~   39 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            467899999999999999999999999999988754

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=93.07  E-value=0.25  Score=47.56  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .++.|+|-|+||-+|.-++..|+.+|++|.-.-|..
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~   40 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDP   40 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCc
Confidence            679999999999999999999999999988776543

>PRK08226 short chain dehydrogenase; Provisional

Probab=93.04  E-value=0.16  Score=45.79  Aligned_cols=36  Identities=17%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++|+++|.|.++-+|+.++..|+++|++|+++.+.
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~   39 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDIS   39 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            678999999999999999999999999999888764

>PRK06914 short chain dehydrogenase; Provisional

Probab=93.01  E-value=0.14  Score=46.66  Aligned_cols=35  Identities=31%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+|.++|.|+++.+|+.++..|+++|+.|+++.++
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~   36 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRN   36 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence            57899999999999999999999999999887654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.01  E-value=0.24  Score=51.70  Aligned_cols=35  Identities=26%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -.|++|+|||+|.+ |...|..|.+.|+.|+++.+.
T Consensus       325 ~~~~~VaIIGaGpA-GLsaA~~L~~~G~~V~V~E~~  359 (654)
T PRK12769        325 KSDKRVAIIGAGPA-GLACADVLARNGVAVTVYDRH  359 (654)
T ss_pred             cCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEecC
Confidence            36899999998887 999999999999999999753

>PRK07109 short chain dehydrogenase; Provisional

Probab=93.00  E-value=0.093  Score=49.96  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++++|.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~   41 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARG   41 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999999989999999999999999988765

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.98  E-value=0.21  Score=46.93  Aligned_cols=51  Identities=25%  Similarity=0.386  Sum_probs=38.3

Q ss_pred             EEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEecCCCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      |.|||+|. ||..+|..|+..+. +|++++..                          +.+. +.+++||+||.++|.|.
T Consensus         1 I~IIGaG~-vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~   78 (300)
T cd01339           1 ISIIGAGN-VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPR   78 (300)
T ss_pred             CEEECCCH-HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCC
Confidence            57899865 59999998887764 88888643                          1233 56899999999998764

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=92.94  E-value=0.21  Score=43.50  Aligned_cols=30  Identities=17%  Similarity=0.433  Sum_probs=25.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS  199 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~  199 (299)
                      +|+|+|.|++ |-.++..|+..|. ++++++.
T Consensus         1 ~VlViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   31 (174)
T cd01487           1 KVGIAGAGGL-GSNIAVLLARSGVGNLKLVDF   31 (174)
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            4899999885 9999999999997 6888863

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.93  E-value=0.17  Score=45.01  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +++|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~   37 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH   37 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence            57899999999999999999999999999887644

>PRK07806 short chain dehydrogenase; Provisional

Probab=92.93  E-value=0.17  Score=44.98  Aligned_cols=36  Identities=31%  Similarity=0.397  Sum_probs=32.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~   39 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ   39 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            678999999998888999999999999999887654

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=92.93  E-value=0.12  Score=46.56  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=32.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||+++|+|.++-+|+.++..|.++|++|.++.++
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~   44 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            3679999999999999999999999999998877654

>PRK05993 short chain dehydrogenase; Provisional

Probab=92.93  E-value=0.13  Score=47.22  Aligned_cols=35  Identities=14%  Similarity=0.080  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+|.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~   37 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRK   37 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999998888999999999999999998765

>PRK07577 short chain dehydrogenase; Provisional

Probab=92.93  E-value=0.18  Score=44.31  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+|+++|.|.++-+|+.++..|+++|++|+++.++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~   36 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARS   36 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999888764

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=92.92  E-value=0.24  Score=42.46  Aligned_cols=75  Identities=27%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             CCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC---------------------------CCChhhhccCCcEEEEe
Q 022295          166 KGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH---------------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       166 ~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~---------------------------t~~l~~~~~~ADIVIsa  217 (299)
                      +|+++++||-+ +-|.+.++.+|...|++++++.-.                           +.++.+.+++||+|++-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            35566666632 234556666666666555555311                           23677999999999865


Q ss_pred             cCC-C-------------Cc-CCCCcc---CCCeEEEEeec
Q 022295          218 AGQ-A-------------MM-IKGSWI---KPGAAVIDVGT  240 (299)
Q Consensus       218 ~g~-p-------------~~-i~~~~v---k~gavVIDvg~  240 (299)
                      .=. .             ++ |+.+.+   +++++++=.+-
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP  121 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLP  121 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCC
Confidence            432 1             03 565554   57888887764

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.91  E-value=0.29  Score=52.38  Aligned_cols=119  Identities=17%  Similarity=0.178  Sum_probs=71.7

Q ss_pred             cEEEEEcCCccchHHH-HHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccC-CCeEEEEeeccCCCC
Q 022295          168 KRAVVVGRSNIVGLPV-SLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIK-PGAAVIDVGTNAVDD  245 (299)
Q Consensus       168 k~vvViG~s~~vG~pl-a~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk-~gavVIDvg~~~~~~  245 (299)
                      +++.|+|.|+. |+.. |++|.++|++|++++.+.....+.++...+-+.. |.+    .+++. ...+|+--|+++...
T Consensus         5 ~~i~viG~G~s-G~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~-g~~----~~~~~~~d~vV~SpgI~~~~p   78 (809)
T PRK14573          5 LFYHFIGIGGI-GMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFL-GHQ----EEHVPEDAVVVYSSSISKDNV   78 (809)
T ss_pred             ceEEEEEecHH-hHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeC-CCC----HHHcCCCCEEEECCCcCCCCH
Confidence            57999999997 9998 9999999999999986543222334444443322 211    12221 245566556554211


Q ss_pred             C---ccCCCceeeccCCchh-hhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          246 S---TKKSGYRLVGDVDFHE-ACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       246 ~---~~~~g~kl~GDvdf~~-~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      .   -...|-.+.++.++-. ..+... +--|-|--|.=||..|+.++++.+
T Consensus        79 ~~~~a~~~gi~v~~~~el~~~~~~~~~-~IaITGTnGKTTTt~li~~iL~~~  129 (809)
T PRK14573         79 EYLSAKSRGNRLVHRAELLAELMQEQI-SILVSGSHGKTTVSSLITAIFQEA  129 (809)
T ss_pred             HHHHHHHCCCcEEeHHHHHHHHHcCCC-EEEEECCCCHHHHHHHHHHHHHhC
Confidence            0   0011235788887632 212111 223668899999999999998764

>PRK07677 short chain dehydrogenase; Provisional

Probab=92.87  E-value=0.14  Score=45.97  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ||+++|.|.++-+|+.++..|+++|++|.++.++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~   34 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRT   34 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999888754

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.86  E-value=0.2  Score=37.48  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=28.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++|||.|- +|--+|..|.+.|.+||++++..
T Consensus         1 ~vvViGgG~-ig~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGF-IGIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSH-HHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCH-HHHHHHHHHHHhCcEEEEEeccc
Confidence            689999766 59999999999999999998764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02602 lactate dehydrogenase

Probab=92.82  E-value=0.28  Score=47.61  Aligned_cols=52  Identities=29%  Similarity=0.514  Sum_probs=40.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-------------------------CChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-------------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      ++|.|||+|. ||..+|..|+.++.  .+.+++.+.                         .+ .+.+++|||||.+.|.
T Consensus        38 ~KI~IIGaG~-VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~d-y~~~~daDiVVitAG~  115 (350)
T PLN02602         38 TKVSVVGVGN-VGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTD-YAVTAGSDLCIVTAGA  115 (350)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCC-HHHhCCCCEEEECCCC
Confidence            6999999866 69999999988873  577776431                         12 2458999999999997


Q ss_pred             C
Q 022295          221 A  221 (299)
Q Consensus       221 p  221 (299)
                      |
T Consensus       116 ~  116 (350)
T PLN02602        116 R  116 (350)
T ss_pred             C
Confidence            5

>PRK06701 short chain dehydrogenase; Provisional

Probab=92.81  E-value=0.16  Score=47.21  Aligned_cols=38  Identities=32%  Similarity=0.459  Sum_probs=34.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -+++||+++|.|+++-+|..++..|+++|++|+++.++
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~   79 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD   79 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999999999999999999999888654

>PRK08263 short chain dehydrogenase; Provisional

Probab=92.80  E-value=0.22  Score=45.38  Aligned_cols=35  Identities=17%  Similarity=0.072  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+|.++|.|+++-+|+.++..|+++|+.|+++.++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~   36 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARD   36 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            46899999999999999999999999999888654

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=92.80  E-value=0.28  Score=47.04  Aligned_cols=55  Identities=15%  Similarity=0.329  Sum_probs=41.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC-------eEEEEcCCC--------------------------CChhhhccCCcEE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA-------TVTIVHSHT--------------------------TDPESIVREADIV  214 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga-------tVtv~~~~t--------------------------~~l~~~~~~ADIV  214 (299)
                      ++|.|||+++.||..+|..|+..+.       .+.+.+.+.                          .+..+.+++||||
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            5899999956679999999987763       466665421                          1234779999999


Q ss_pred             EEecCCCC
Q 022295          215 IAAAGQAM  222 (299)
Q Consensus       215 Isa~g~p~  222 (299)
                      |.+.|.|.
T Consensus        83 vitaG~~~   90 (322)
T cd01338          83 LLVGAKPR   90 (322)
T ss_pred             EEeCCCCC
Confidence            99999754

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.79  E-value=0.27  Score=51.26  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .||+|+|||.|.+ |...|..|.++|+.|+++.+.
T Consensus       309 ~~kkVaIIG~Gpa-Gl~aA~~L~~~G~~Vtv~e~~  342 (639)
T PRK12809        309 RSEKVAVIGAGPA-GLGCADILARAGVQVDVFDRH  342 (639)
T ss_pred             CCCEEEEECcCHH-HHHHHHHHHHcCCcEEEEeCC
Confidence            6999999998776 999999999999999999744

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=92.79  E-value=0.15  Score=50.94  Aligned_cols=37  Identities=24%  Similarity=0.434  Sum_probs=34.0

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+|+|||+|.. |--++..|...|++||+.-|.
T Consensus       171 ~~~~GKrV~VIG~GaS-A~di~~~l~~~ga~vt~~qRs  207 (443)
T COG2072         171 EDLRGKRVLVIGAGAS-AVDIAPELAEVGASVTLSQRS  207 (443)
T ss_pred             cccCCCeEEEECCCcc-HHHHHHHHHhcCCeeEEEecC
Confidence            4899999999999988 999999999999999999765

>PRK06182 short chain dehydrogenase; Validated

Probab=92.78  E-value=0.14  Score=46.64  Aligned_cols=35  Identities=26%  Similarity=0.171  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~   36 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARR   36 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            57999999998889999999999999999988654

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=92.76  E-value=0.15  Score=45.98  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=31.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ...+++++|+|+++-+|+.++..|+++|++|+.+.+
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R   49 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR   49 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence            356799999999888999999999999999887643

>PRK08303 short chain dehydrogenase; Provisional

Probab=92.75  E-value=0.17  Score=47.66  Aligned_cols=37  Identities=30%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|++.-+|+.++..|+++|++|.++.++
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            4789999999998878999999999999999988764

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.73  E-value=0.26  Score=45.17  Aligned_cols=52  Identities=23%  Similarity=0.332  Sum_probs=40.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC---CeEEEEcCCC---------------CChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD---ATVTIVHSHT---------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g---atVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      .++.|||.|.+ |..++..|.+.|   ..|++++++.               .+..+.+.++|+||.++..
T Consensus         3 m~I~iIG~G~m-G~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~   72 (267)
T PRK11880          3 KKIGFIGGGNM-ASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP   72 (267)
T ss_pred             CEEEEEechHH-HHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH
Confidence            47999998775 999999998887   5788887642               2344567899999998864

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=92.71  E-value=0.24  Score=47.08  Aligned_cols=53  Identities=25%  Similarity=0.407  Sum_probs=39.6

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-------------------CC------hhhhccCCcEEEEecCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-------------------TD------PESIVREADIVIAAAGQA  221 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-------------------~~------l~~~~~~ADIVIsa~g~p  221 (299)
                      +|.|||+|. ||.++|..|+.++.  .+.+.+.+.                   .+      -.+.+++|||||.++|.|
T Consensus         1 Ki~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~   79 (307)
T cd05290           1 KLVVIGAGH-VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS   79 (307)
T ss_pred             CEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence            589999976 69999999887773  577775321                   01      147799999999999975


Q ss_pred             C
Q 022295          222 M  222 (299)
Q Consensus       222 ~  222 (299)
                      .
T Consensus        80 ~   80 (307)
T cd05290          80 I   80 (307)
T ss_pred             C
Confidence            4

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08267 short chain dehydrogenase; Provisional

Probab=92.68  E-value=0.13  Score=46.24  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=30.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      |+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~   34 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDIN   34 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            689999999999999999999999999988654

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=92.68  E-value=0.11  Score=46.34  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||+++|.|.++-+|..++..|+++|++|.++.++
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~   45 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRT   45 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence            4689999999999999999999999999999888764

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=92.67  E-value=0.25  Score=47.16  Aligned_cols=53  Identities=25%  Similarity=0.417  Sum_probs=39.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC--eEEEEcC-----------------------CCCChhhhccCCcEEEEecCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHS-----------------------HTTDPESIVREADIVIAAAGQA  221 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~-----------------------~t~~l~~~~~~ADIVIsa~g~p  221 (299)
                      +|.|||++|.||..+|..|+.++.  .+.+++.                       .+.++.+.+++|||||.+.|.|
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~   79 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP   79 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence            799999945579999999987773  4554431                       1123467899999999999975

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=92.67  E-value=0.2  Score=47.17  Aligned_cols=36  Identities=19%  Similarity=0.134  Sum_probs=32.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +++||+|+|.|+++.+|..++..|+++|++|+++.+
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r   38 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR   38 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence            578999999999999999999999999999887643

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=92.64  E-value=0.37  Score=47.79  Aligned_cols=118  Identities=16%  Similarity=0.238  Sum_probs=66.8

Q ss_pred             EEEEEcCCccchHH-HHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccC-CCeEEEEeeccCCCCC
Q 022295          169 RAVVVGRSNIVGLP-VSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIK-PGAAVIDVGTNAVDDS  246 (299)
Q Consensus       169 ~vvViG~s~~vG~p-la~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk-~gavVIDvg~~~~~~~  246 (299)
                      ++.+||.|++ |+. +|++|.++|++|++++.+.....+.++...+-+. .|.    +++.+. ...+|+--|+++....
T Consensus         1 ~~~~iGiggs-Gm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~-~g~----~~~~~~~~d~vV~spgi~~~~p~   74 (448)
T TIGR01082         1 KIHFVGIGGI-GMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIY-IGH----SAENLDDADVVVVSAAIKDDNPE   74 (448)
T ss_pred             CEEEEEECHH-HHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEe-CCC----CHHHCCCCCEEEECCCCCCCCHH
Confidence            3689999997 997 9999999999999998654322222332222221 111    111111 2345555555432100


Q ss_pred             ---ccCCCceeeccCCchh-hhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          247 ---TKKSGYRLVGDVDFHE-ACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       247 ---~~~~g~kl~GDvdf~~-~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                         -...|-.+.++.++-. ..+.. .+.-|-|=-|.=|+..|+.++++.+
T Consensus        75 ~~~a~~~~i~v~~~~el~~~~~~~~-~~IaITGTnGKTTTt~ll~~iL~~~  124 (448)
T TIGR01082        75 IVEAKERGIPVIRRAEMLAELMRFR-HSIAVAGTHGKTTTTAMIAVILKEA  124 (448)
T ss_pred             HHHHHHcCCceEeHHHHHHHHHhcC-cEEEEECCCChHHHHHHHHHHHHHc
Confidence               0001224777777642 22111 1223668889999999999998764

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=92.61  E-value=0.21  Score=47.44  Aligned_cols=36  Identities=31%  Similarity=0.345  Sum_probs=32.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+++|.|+++.+|+.++..|+++|+.|+++.++
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence            478999999999989999999999999999887643

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK07985 oxidoreductase; Provisional

Probab=92.58  E-value=0.19  Score=46.75  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~   81 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYL   81 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecC
Confidence            479999999999999999999999999999988753

>PRK12744 short chain dehydrogenase; Provisional

Probab=92.54  E-value=0.18  Score=45.38  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=30.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      .++||+++|.|.++-+|+.++..|+++|++|.++.
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~   39 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIH   39 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEe
Confidence            46789999999999999999999999999855553

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=92.49  E-value=0.18  Score=49.48  Aligned_cols=33  Identities=36%  Similarity=0.593  Sum_probs=29.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH  198 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~  198 (299)
                      |+.++|+|||.|++ |-+++..|+..|. ++++++
T Consensus        40 L~~~~VlviG~GGl-Gs~va~~La~~Gvg~i~lvD   73 (392)
T PRK07878         40 LKNARVLVIGAGGL-GSPTLLYLAAAGVGTLGIVE   73 (392)
T ss_pred             HhcCCEEEECCCHH-HHHHHHHHHHcCCCeEEEEC
Confidence            57789999999995 9999999999996 788886

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=92.48  E-value=0.22  Score=47.24  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             CCCcCCcEEEEEcC--CccchHHHHHHHhhCCCeEEEE
Q 022295          162 GVTIKGKRAVVVGR--SNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       162 ~~~l~gk~vvViG~--s~~vG~pla~lL~~~gatVtv~  197 (299)
                      +.+|+||.++|-|+  |.-+|+.+|..|+++||+|.++
T Consensus         4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~~   41 (303)
T PLN02730          4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILVG   41 (303)
T ss_pred             CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEE
Confidence            45789999999999  3335999999999999999884

>PRK05442 malate dehydrogenase; Provisional

Probab=92.46  E-value=0.31  Score=46.85  Aligned_cols=55  Identities=18%  Similarity=0.388  Sum_probs=40.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC-------eEEEEcCC--------------------------CCChhhhccCCcEE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA-------TVTIVHSH--------------------------TTDPESIVREADIV  214 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga-------tVtv~~~~--------------------------t~~l~~~~~~ADIV  214 (299)
                      .+|.|||+++.||..+|..|...+.       .+.+.+.+                          +.+..+.+++||||
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            5899999956679999998887652       46666531                          11334789999999


Q ss_pred             EEecCCCC
Q 022295          215 IAAAGQAM  222 (299)
Q Consensus       215 Isa~g~p~  222 (299)
                      |.+.|.|.
T Consensus        85 VitaG~~~   92 (326)
T PRK05442         85 LLVGARPR   92 (326)
T ss_pred             EEeCCCCC
Confidence            99999653

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.45  E-value=0.23  Score=45.93  Aligned_cols=52  Identities=23%  Similarity=0.322  Sum_probs=40.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccCCcEEEEecC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVREADIVIAAAG  219 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g  219 (299)
                      ++++|.|+++.+|+.++..|+++|.+|+++.++..                     .+.+.++.+|+||..++
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            36899999999999999999999999988865421                     13355677899887665

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK06720 hypothetical protein; Provisional

Probab=92.44  E-value=0.16  Score=43.88  Aligned_cols=40  Identities=30%  Similarity=0.405  Sum_probs=34.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      ..++||.++|.|+++-+|+.++..|.++|++|.++.++..
T Consensus        12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~   51 (169)
T PRK06720         12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQE   51 (169)
T ss_pred             cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3478999999999887899999999999999998876543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=92.44  E-value=0.22  Score=54.40  Aligned_cols=35  Identities=26%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -.||+|+|||.|.+ |..+|..|.++|..|||..+.
T Consensus       304 ~~gkkVaVIGsGPA-GLsaA~~Lar~G~~VtVfE~~  338 (944)
T PRK12779        304 AVKPPIAVVGSGPS-GLINAYLLAVEGFPVTVFEAF  338 (944)
T ss_pred             CCCCeEEEECCCHH-HHHHHHHHHHCCCeEEEEeeC
Confidence            46999999999888 999999999999999999753

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=92.43  E-value=0.21  Score=44.96  Aligned_cols=36  Identities=28%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +++||.++|.|.++-+|+.++..|+++|++|..+++
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~   42 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI   42 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecC
Confidence            578999999999998999999999999999887653

>PRK07411 hypothetical protein; Validated

Probab=92.43  E-value=0.19  Score=49.35  Aligned_cols=34  Identities=26%  Similarity=0.493  Sum_probs=30.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~  198 (299)
                      .|+.++|+|||.|+. |-+++..|+..|. ++++++
T Consensus        35 ~L~~~~VlivG~GGl-G~~va~~La~~Gvg~l~lvD   69 (390)
T PRK07411         35 RLKAASVLCIGTGGL-GSPLLLYLAAAGIGRIGIVD   69 (390)
T ss_pred             HHhcCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEC
Confidence            357789999999995 9999999999996 788886

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.42  E-value=0.18  Score=46.23  Aligned_cols=36  Identities=17%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             cCCcEEEEEcCCc--cchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSN--IVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~--~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||.++|.|+|.  -+|+.+|..|+++|++|.++.++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            6799999999873  35999999999999999887654

>PRK07791 short chain dehydrogenase; Provisional

Probab=92.41  E-value=0.17  Score=46.85  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=32.1

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ++||.++|.|++.-+|+.++..|+++|++|.++.+
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~   38 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDI   38 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeC
Confidence            68999999999999999999999999999988754

>PRK07831 short chain dehydrogenase; Provisional

Probab=92.41  E-value=0.19  Score=45.29  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             CcCCcEEEEEcCCc-cchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSN-IVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~-~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||+++|.|.++ -+|+.++..|+++|++|+++.++
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~   51 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIH   51 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999853 36999999999999999988654

>KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism]

Probab=92.40  E-value=0.3  Score=45.56  Aligned_cols=102  Identities=15%  Similarity=0.192  Sum_probs=69.6

Q ss_pred             HHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeE
Q 022295          116 VLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATV  194 (299)
Q Consensus       116 i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatV  194 (299)
                      |+..+.-..|++.+.-...--+..| ..+.|.||-+.| .+.+.|++|-.++|-+++=||-|+.|=-.+..+.+.-|.++
T Consensus       139 I~ARV~khsDi~tlak~sSvPiINg-L~D~~HPlQ~laD~LTi~E~f~ks~~glkvawiGD~NNvlhs~mia~ak~gih~  217 (346)
T KOG1504|consen  139 IMARVNKHSDILTLAKYSSVPIING-LCDHFHPLQILADLLTIIEHFGKSVEGLKVAWIGDGNNVLHSWMIAAAKFGIHF  217 (346)
T ss_pred             HHHHHhhhhhHHHHhhccCCceecc-cccccChHHHHHHHHHHHHHHhccccccEEEEEccccHHHHHHHHHhhhcceEE
Confidence            3334444555555543333334434 467799999988 78888999999999999999999887666555555556665


Q ss_pred             EEEcCC-------------------------CCChhhhccCCcEEEEec
Q 022295          195 TIVHSH-------------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       195 tv~~~~-------------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      .+..-+                         |.|-.++...|||+||-|
T Consensus       218 s~atPkg~e~d~div~~akq~a~eNgsk~eltnDp~eA~~~anvlvtDt  266 (346)
T KOG1504|consen  218 SCATPKGYEPDKDIVSKAKQAAEENGSKFELTNDPLEAVIGANVLVTDT  266 (346)
T ss_pred             EecCCCCCCcchHHHHHHHHHHHhcCCEEEEecChHHhhcCCcEEEEeh
Confidence            544311                         335568889999999765

>PLN02740 Alcohol dehydrogenase-like

Probab=92.38  E-value=0.32  Score=46.91  Aligned_cols=94  Identities=16%  Similarity=0.192  Sum_probs=58.2

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-------------------C--Ch
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-------------------T--DP  204 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-------------------~--~l  204 (299)
                      ++|.....+..+.+..---.|.+|+|+|.|. +|..+++++...|+ .|+.+.+..                   .  ++
T Consensus       179 l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~-vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~  257 (381)
T PLN02740        179 LSCGVSTGVGAAWNTANVQAGSSVAIFGLGA-VGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPV  257 (381)
T ss_pred             hcccchhhHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchH
Confidence            4443333333332222234699999999755 69999999999998 577664321                   0  12


Q ss_pred             hhhc----c-CCcEEEEecCCCCcCCC--CccCCC-eEEEEeecc
Q 022295          205 ESIV----R-EADIVIAAAGQAMMIKG--SWIKPG-AAVIDVGTN  241 (299)
Q Consensus       205 ~~~~----~-~ADIVIsa~g~p~~i~~--~~vk~g-avVIDvg~~  241 (299)
                      .+.+    . .+|+||.++|.+..+..  .++++| ..++-+|..
T Consensus       258 ~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~  302 (381)
T PLN02740        258 HERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIH  302 (381)
T ss_pred             HHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccC
Confidence            2221    1 48999999998765432  456664 566667764

>PRK12743 oxidoreductase; Provisional

Probab=92.35  E-value=0.21  Score=44.94  Aligned_cols=33  Identities=21%  Similarity=0.305  Sum_probs=30.3

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~   34 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWH   34 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            689999999999999999999999999988854

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=92.34  E-value=0.43  Score=44.55  Aligned_cols=95  Identities=16%  Similarity=0.207  Sum_probs=61.5

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------------------
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------------------  202 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------------------  202 (299)
                      +||.....+..+.....--.|.+++|.|.++.+|..+++++...|++|++..+...                        
T Consensus       127 ~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  206 (341)
T cd08290         127 LSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELR  206 (341)
T ss_pred             hhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccc
Confidence            34544445555544433347899999998778899999999999998665543221                        


Q ss_pred             --Chhhhcc-----CCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          203 --DPESIVR-----EADIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       203 --~l~~~~~-----~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                        +..+.++     ..|+++.++|.+.+. -..+++++..++++|..
T Consensus       207 ~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~  253 (341)
T cd08290         207 SLLATELLKSAPGGRPKLALNCVGGKSATELARLLSPGGTMVTYGGM  253 (341)
T ss_pred             cccHHHHHHHHcCCCceEEEECcCcHhHHHHHHHhCCCCEEEEEecc
Confidence              1111111     368888888865432 23557788889998853

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK08177 short chain dehydrogenase; Provisional

Probab=92.33  E-value=0.25  Score=43.62  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=30.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      |+++|.|+++.+|+.++..|+++|++|+++.++.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence            6799999999999999999999999999887653

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=92.33  E-value=0.4  Score=45.72  Aligned_cols=52  Identities=19%  Similarity=0.020  Sum_probs=39.1

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      +||.....+..|.+....-.|.+|+|.|+++.||..+++++...|++|+.+.
T Consensus       139 l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~  190 (348)
T PLN03154        139 LGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA  190 (348)
T ss_pred             cccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc
Confidence            4555555666665444345799999999977789999999999999877654

>PRK06128 oxidoreductase; Provisional

Probab=92.28  E-value=0.22  Score=46.33  Aligned_cols=35  Identities=14%  Similarity=0.429  Sum_probs=31.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~   86 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNY   86 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEe
Confidence            37899999999999999999999999999988764

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=92.28  E-value=0.27  Score=44.57  Aligned_cols=52  Identities=25%  Similarity=0.381  Sum_probs=41.4

Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC----------------hhhhccCCcEEEEecCCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD----------------PESIVREADIVIAAAGQA  221 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~----------------l~~~~~~ADIVIsa~g~p  221 (299)
                      |+|.|++|.+|..++..|+++|.+|+...++...                +.+.+...|+||..+|.+
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~~   68 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGEP   68 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCCC
Confidence            5899999999999999999999999988764321                224567799999888754

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=92.28  E-value=0.19  Score=48.54  Aligned_cols=83  Identities=13%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccc-hHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCC-c-
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIV-GLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAM-M-  223 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~v-G~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~-~-  223 (299)
                      .|-...+....|.+.     |.+|++..++... -......+...|++++      .+..+..++||+||.+++.+. . 
T Consensus        28 ~~~gG~~MA~~La~a-----G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~a------sd~~eaa~~ADvVIlaVP~~~~v~   96 (342)
T PRK12557         28 PPYGGSRMAIEFAEA-----GHDVVLAEPNRSILSEELWKKVEDAGVKVV------SDDAEAAKHGEIHILFTPFGKKTV   96 (342)
T ss_pred             CCcCHHHHHHHHHhC-----CCeEEEEECCHHHhhHHHHHHHHHCCCEEe------CCHHHHHhCCCEEEEECCCcHHHH
Confidence            344556666555544     3467777765531 0112223445665432      245577899999999998655 1 


Q ss_pred             --CC--CCccCCCeEEEEeec
Q 022295          224 --IK--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       224 --i~--~~~vk~gavVIDvg~  240 (299)
                        +.  .+.+++|++|||++.
T Consensus        97 ~Vl~~L~~~L~~g~IVId~ST  117 (342)
T PRK12557         97 EIAKNILPHLPENAVICNTCT  117 (342)
T ss_pred             HHHHHHHhhCCCCCEEEEecC
Confidence              11  244688999999875

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=92.25  E-value=0.16  Score=42.18  Aligned_cols=30  Identities=23%  Similarity=0.501  Sum_probs=25.7

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS  199 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~  199 (299)
                      +|+|+|.|++ |..++..|...|. ++++++.
T Consensus         1 ~VliiG~Ggl-Gs~ia~~L~~~Gv~~i~ivD~   31 (143)
T cd01483           1 RVLLVGLGGL-GSEIALNLARSGVGKITLIDF   31 (143)
T ss_pred             CEEEECCCHH-HHHHHHHHHHCCCCEEEEEcC
Confidence            5899999885 9999999999997 7888863

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06483 dihydromonapterin reductase; Provisional

Probab=92.24  E-value=0.2  Score=44.36  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +|+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH   36 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence            57899999998899999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	299
4a26_A	300	The Crystal Structure Of Leishmania Major N5,N10- M		1e-78
1a4i_A	301	Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE		4e-62
1dia_A	306	Human Methylenetetrahydrofolate Dehydrogenase Cyclo		4e-62
4a5o_A	286	Crystal Structure Of Pseudomonas Aeruginosa N5, N10		3e-60
1b0a_A	288	5,10, Methylene-Tetrahydropholate DehydrogenaseCYCL		7e-59
3l07_A	285	Methylenetetrahydrofolate DehydrogenaseMETHENYLTETR		9e-57
3p2o_A	285	Crystal Structure Of Fold Bifunctional Protein From		3e-54
4b4u_A	303	Crystal Structure Of Acinetobacter Baumannii N5, N1		2e-51
2c2x_A	281	Three Dimensional Structure Of Bifunctional Methyle		3e-51
3ngl_A	276	Crystal Structure Of Bifunctional 5,10-Methylenetet		1e-28
1edz_A	320	Structure Of The Nad-Dependent 5,10- Methylenetetra		6e-09

>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10- Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE Length = 300

Iteration: 1
 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 155/289 (53%), Positives = 194/289 (67%), Gaps = 3/289 (1%)
Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYG-KVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
           A IIDGKA+A  IRSE+ ++V  L E YG +VPGLA +IVG R DS+ YV +K KA AEV
Sbjct: 6   AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65
Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
           G+ SF+++LPE +S+  L   V +LN  P+ HGI+VQLPLPKH+NE + + +I   KD D
Sbjct: 66  GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDAD 125
Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLL 187
              P+N+G L  KGR+P F PCT KG + LLKR G+ + GKRAVV+GRSNIVG PV+ LL
Sbjct: 126 ALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALL 185
Query: 188 LKADATVTIVHSHTTDPESI--VREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
           +K +ATVTIVHS T+  + I  +R ADIVIAA GQ   +KG WIK GAAV+DVGT  V D
Sbjct: 186 MKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVPD 245
Query: 246 STKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAK 294
            ++K GYRLVGDV F EA                     LL NTL+  K
Sbjct: 246 PSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFK 294

>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE Length = 301

Iteration: 1
 Score =  234 bits (597), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/293 (44%), Positives = 178/293 (60%), Gaps = 3/293 (1%)
Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
           A I++GK ++  IR+ +  +V  L E+  G  P LA++ VG R DS  Y+++K KA  E+
Sbjct: 4   AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL--PKHINEEKVLGEISLEKD 125
           GIK+  I LP   +E+E++  +  LN    VHG LVQLPL     IN E+V+  I+ EKD
Sbjct: 64  GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL 185
           VDG   +N G+LA    +  F+PCTPKGCLEL+K +GV I G+ AVVVGRS IVG P+  
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 186 LLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
           LLL  +ATVT  HS T   +  V + DI++ A GQ  M+KG WIKPGA VID G N V D
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPD 243
Query: 246 STKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRVIE 298
             K +G ++VGDV + EA +                   L+++T++ AKR +E
Sbjct: 244 DKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE 296

>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase Cyclohydrolase Complexed With Nadp And Inhibitor Ly249543 Length = 306

Iteration: 1
 Score =  234 bits (597), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/293 (44%), Positives = 178/293 (60%), Gaps = 3/293 (1%)
Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
           A I++GK ++  IR+ +  +V  L E+  G  P LA++ VG R DS  Y+++K KA  E+
Sbjct: 4   AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL--PKHINEEKVLGEISLEKD 125
           GIK+  I LP   +E+E++  +  LN    VHG LVQLPL     IN E+V+  I+ EKD
Sbjct: 64  GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL 185
           VDG   +N G+LA    +  F+PCTPKGCLEL+K +GV I G+ AVVVGRS IVG P+  
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 186 LLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
           LLL  +ATVT  HS T   +  V + DI++ A GQ  M+KG WIKPGA VID G N V D
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPD 243
Query: 246 STKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRVIE 298
             K +G ++VGDV + EA +                   L+++T++ AKR +E
Sbjct: 244 DKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE 296

>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10- Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Length = 286

Iteration: 1
 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/288 (45%), Positives = 172/288 (59%), Gaps = 8/288 (2%)
Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A +IDGKA+A  +R +IA+ V    ++  +VPGLAV++VG    SQ YV+ KRK C EVG
Sbjct: 5   AQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVG 64
Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
             S   DLP + S+ +L++ +  LN  P + GILVQLPLP H++   +L  I  +KDVDG
Sbjct: 65  FLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDG 124
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP NIG+LA   R PL  PCTPKG + LL  +G  + G  AVVVG SNIVG P++L LL
Sbjct: 125 FHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELL 182
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
               TVT+ H  T D    V  AD+V+ AAG+  ++KG WIK GA VIDVG N      +
Sbjct: 183 LGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGIN------R 236
Query: 249 KSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRV 296
           ++  RLVGDV++  A +                   LL NTL  A+ +
Sbjct: 237 QADGRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHL 284

>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate DehydrogenaseCYCLOHYDROLASE FROM E COLI Length = 288

Iteration: 1
 Score =  223 bits (569), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 129/282 (45%), Positives = 164/282 (58%), Gaps = 8/282 (2%)
Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A IIDGK +AQ +RSE+A++V+       + PGLAVV+VG    SQ YV+ KRKAC EVG
Sbjct: 3   AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 62
Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
             S   DLPE  SEAEL+  +  LN    + GILVQLPLP  I+  KVL  I  +KDVDG
Sbjct: 63  FVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 122
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP N+G+L    R P   PCTP+G + LL+R  +   G  AVV+G SNIVG P+S+ LL
Sbjct: 123 FHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 180
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
            A  T T+ H  T +    V  AD++I A G+   I G WIK GA VIDVG N +++   
Sbjct: 181 LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG-- 238
Query: 249 KSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTL 290
               ++VGDV F +A K                   L+ NTL
Sbjct: 239 ----KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTL 276

>pdb|3L07|A Chain A, Methylenetetrahydrofolate DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase, Putative Bifunctional Protein Fold From Francisella Tularensis. Length = 285

Iteration: 1
 Score =  216 bits (551), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 117/250 (46%), Positives = 157/250 (62%), Gaps = 8/250 (3%)
Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           +IDGK++++ ++  +A +V+         P L  +IVG    S++YV+ K KACA+VGI 
Sbjct: 6   LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGID 65
Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
           S  I LPE  +E+EL+  + +LN    VH ILVQLPLP HIN+  V+  I  EKDVDGFH
Sbjct: 66  SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH 125
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
           P N+G+L ++ +  L   CTPKG + +L+  G+  +G  AVVVG SN+VG PVS LLL A
Sbjct: 126 PTNVGRLQLRDKKCLE-SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA 184
Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
            ATVT  H  TTD +S   +ADI+I A G+   I    +K GA VIDVG N VD      
Sbjct: 185 KATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG----- 239
Query: 251 GYRLVGDVDF 260
             ++VGDVDF
Sbjct: 240 --KIVGDVDF 247

>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From Campylobacter Jejuni Length = 285

Iteration: 1
 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 122/286 (42%), Positives = 169/286 (59%), Gaps = 8/286 (2%)
Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
           T++DGKA++  I+ E+ E+ + L  K G    LAV++VG    SQ+YV  K KAC E GI
Sbjct: 5   TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGI 63
Query: 70  KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
           KS    L E +++ EL++ ++ LN    VHGILVQLPLP HI ++ +L  I   KDVDGF
Sbjct: 64  KSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGF 123
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
           HP+N+G L + G +  FLPCTP G  +LLK   + ++GK AV++G SNIVG P +  LL 
Sbjct: 124 HPINVGYLNL-GLESGFLPCTPLGVXKLLKAYEIDLEGKDAVIIGASNIVGRPXATXLLN 182
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
           A ATV++ H  T D     R+AD++I AAG   +++   +K G  V+DVG N ++     
Sbjct: 183 AGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDXVKEGVIVVDVGINRLESG--- 239
Query: 250 SGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKR 295
              ++VGDVDF E  K                   LL NT+  AK 
Sbjct: 240 ---KIVGDVDFEEVSKKSSYITPVPGGVGPXTIAXLLENTVKSAKN 282

>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp Cofactor Length = 303

Iteration: 1
 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/236 (42%), Positives = 151/236 (63%), Gaps = 2/236 (0%)
Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A ++DG+A+A+ I   +   V  L  K G+ P LA ++VG    S +YV MK  AC  VG
Sbjct: 23  ALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVG 82
Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           + S  I+LP++ +  +L++++ +LN  PDVHGIL+Q P+P  I+E      ISL KDVDG
Sbjct: 83  MDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDG 142
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
              L  G++AM   +  +   TP G + +LK + + I GK AVVVGRS I+G P++++LL
Sbjct: 143 VTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLL 200
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
           +A+ATVTI HS T +   +V++ADI++ A G+A +I+  WIK GA V+D G +  D
Sbjct: 201 QANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRD 256

>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase From Mycobacterium Tuberculosis Length = 281

Iteration: 1
 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 150/252 (59%), Gaps = 12/252 (4%)
Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A ++DGKA    I  ++ + V  L +  G+ PGL  ++VG    SQ+YV  K   CA+VG
Sbjct: 3   AIMLDGKATRDEIFGDLKQRVAAL-DAAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVG 61
Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I S   DLP  +S A L   + ELN  PD  G +VQLPLPKH++E   L  +   KD DG
Sbjct: 62  ITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
            HP N+G+L +    P  LPCTP+G + LL+R  ++I G   VV+GR   VG P+ LLL 
Sbjct: 122 LHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLT 179
Query: 189 K--ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
           +   +ATVT+ H+ T D  ++ R+ADIV+AA G A ++    ++PGAAVIDVG +  DD 
Sbjct: 180 RRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDDG 239
Query: 247 TKKSGYRLVGDV 258
                  LVGDV
Sbjct: 240 -------LVGDV 244

>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional 5,10-Methylenetetrahydrofolate Dehydrogenase CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM Length = 276

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 131/245 (53%), Gaps = 12/245 (4%)
Query: 18  AQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP 77
            + I  + AE +  + E+ G  P L ++ +G  + +  Y   K +   ++GI + D++  
Sbjct: 6   GEEIAEKKAENLHGIIERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKY 64
Query: 78  EQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKL 137
           + +S  +L+ ++ +L   P ++GI+++ PLPK  +  +++  I   KDVD   P N G +
Sbjct: 65  DDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLI 124
Query: 138 AMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV 197
           A+       +P TP+  ++++   G         +V RS +VG P+S++LL  + TV++ 
Sbjct: 125 ALNRE--FLVPATPRAVIDIMDYYGY--HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVC 180
Query: 198 HSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGD 257
           HS T D  S+ R + IV+ A G+   +    + PG+ VIDVG N V+D       ++VGD
Sbjct: 181 HSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVND-------KVVGD 233
Query: 258 VDFHE 262
            +F +
Sbjct: 234 ANFED 238

>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10- Methylenetetrahydrofolate Dehydrogenase From Saccharomyces Cerevisiae Length = 320

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 21/205 (10%)
Query: 10  TIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           TI+  K VA+T  +EI   V    + + G+ P L   +      ++ Y +  +K    +G
Sbjct: 7   TILASK-VAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMG 65
Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
            + +D+ + E     E    + + N    V+GI+V  P+  +  ++ +   +  EKDV+G
Sbjct: 66  FR-YDLRVIEDKDFLE--EAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEG 122
Query: 129 FHPL-------NIGKLAMKGRDPLFLPCTPKGC---LELLK------RSGVTIKGKRAVV 172
            + +       N+  L  + R    LPCTP      LE LK        G  + GK+ +V
Sbjct: 123 LNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIV 182
Query: 173 VGRSNIVGLPVSLLLLKADATVTIV 197
           + RS IVG P++ LL    ATV  V
Sbjct: 183 INRSEIVGRPLAALLANDGATVYSV 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	1e-180
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	1e-180
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	1e-171
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	1e-170
3l07_A	285	Bifunctional protein fold; structural genomics, ID	1e-169
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	1e-168
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	1e-160
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	1e-158
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	1e-127
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	2e-08
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	3e-06
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	8e-05

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* Length = 301

 Score =  498 bits (1285), Expect = e-180
 Identities = 145/294 (49%), Positives = 194/294 (65%), Gaps = 3/294 (1%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
           A I++GK ++  IR+ +  +V  L E+  G  P LA++ VG R DS  Y+++K KA  E+
Sbjct: 4   AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63

Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH--INEEKVLGEISLEKD 125
           GIK+  I LP   +E+E++  +  LN    VHG LVQLPL     IN E+V+  I+ EKD
Sbjct: 64  GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123

Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL 185
           VDG   +N G+LA    +  F+PCTPKGCLEL+K +GV I G+ AVVVGRS IVG P+  
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183

Query: 186 LLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
           LLL  +ATVT  HS T   +  V + DI++ A GQ  M+KG WIKPGA VID G N V D
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPD 243

Query: 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
             K +G ++VGDV + EA + A  +TPVPGGVGPMTVAML+++T++ AKR +E 
Sbjct: 244 DKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLEK 297

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} Length = 300

 Score =  498 bits (1284), Expect = e-180
 Identities = 168/290 (57%), Positives = 208/290 (71%), Gaps = 3/290 (1%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
           A IIDGKA+A  IRSE+ ++V  L E Y G+VPGLA +IVG R DS+ YV +K KA AEV
Sbjct: 6   AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65

Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
           G+ SF+++LPE +S+  L   V +LN  P+ HGI+VQLPLPKH+NE + + +I   KD D
Sbjct: 66  GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDAD 125

Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLL 187
              P+N+G L  KGR+P F PCT KG + LLKR G+ + GKRAVV+GRSNIVG PV+ LL
Sbjct: 126 ALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALL 185

Query: 188 LKADATVTIVHSH--TTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
           +K +ATVTIVHS   T D    +R ADIVIAA GQ   +KG WIK GAAV+DVGT  V D
Sbjct: 186 MKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVPD 245

Query: 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
            ++K GYRLVGDV F EA   A  ++PVPGGVGPMT+AMLL NTL+  K 
Sbjct: 246 PSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKA 295

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} Length = 286

 Score =  473 bits (1220), Expect = e-171
 Identities = 144/287 (50%), Positives = 183/287 (63%), Gaps = 8/287 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A +IDGKA+A  +R +IA+ V    ++  +VPGLAV++VG    SQ YV+ KRK C EVG
Sbjct: 5   AQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVG 64

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
             S   DLP + S+ +L++ +  LN  P + GILVQLPLP H++   +L  I  +KDVDG
Sbjct: 65  FLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDG 124

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP NIG+LA   R PL  PCTPKG + LL  +G  + G  AVVVG SNIVG P++L LL
Sbjct: 125 FHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELL 182

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
               TVT+ H  T D    V  AD+V+ AAG+  ++KG WIK GA VIDVG N   D   
Sbjct: 183 LGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADG-- 240

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               RLVGDV++  A + A  +TPVPGGVGPMT A LL NTL  A+ 
Sbjct: 241 ----RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEH 283

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 Length = 288

 Score =  471 bits (1214), Expect = e-170
 Identities = 143/287 (49%), Positives = 179/287 (62%), Gaps = 8/287 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A IIDGK +AQ +RSE+A++V+       + PGLAVV+VG    SQ YV+ KRKAC EVG
Sbjct: 3   AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 62

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
             S   DLPE  SEAEL+  +  LN    + GILVQLPLP  I+  KVL  I  +KDVDG
Sbjct: 63  FVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 122

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP N+G+L    R P   PCTP+G + LL+R  +   G  AVV+G SNIVG P+S+ LL
Sbjct: 123 FHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 180

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
            A  T T+ H  T +    V  AD++I A G+   I G WIK GA VIDVG N +++   
Sbjct: 181 LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG-- 238

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               ++VGDV F +A K A  +TPVPGGVGPMTVA L+ NTL     
Sbjct: 239 ----KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVE 281

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} Length = 285

 Score =  470 bits (1211), Expect = e-169
 Identities = 132/287 (45%), Positives = 175/287 (60%), Gaps = 8/287 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
             +IDGK++++ ++  +A +V+         P L  +IVG    S++YV+ K KACA+VG
Sbjct: 4   MILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVG 63

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I S  I LPE  +E+EL+  + +LN    VH ILVQLPLP HIN+  V+  I  EKDVDG
Sbjct: 64  IDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDG 123

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP N+G+L ++ +      CTPKG + +L+  G+  +G  AVVVG SN+VG PVS LLL
Sbjct: 124 FHPTNVGRLQLRDK-KCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLL 182

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
            A ATVT  H  TTD +S   +ADI+I A G+   I    +K GA VIDVG N VD    
Sbjct: 183 NAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG--- 239

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               ++VGDVDF         +TPVPGGVGPMT+  LL NT   A+ 
Sbjct: 240 ----KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQE 282

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} Length = 285

 Score =  467 bits (1205), Expect = e-168
 Identities = 133/287 (46%), Positives = 186/287 (64%), Gaps = 8/287 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
            T++DGKA++  I+ E+ E+ + L  K G    LAV++VG    SQ+YV  K KAC E G
Sbjct: 4   MTLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECG 62

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           IKS    L E +++ EL++ ++ LN    VHGILVQLPLP HI ++ +L  I   KDVDG
Sbjct: 63  IKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDG 122

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP+N+G L + G +  FLPCTP G ++LLK   + ++GK AV++G SNIVG P++ +LL
Sbjct: 123 FHPINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLL 181

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
            A ATV++ H  T D     R+AD++I AAG   +++   +K G  V+DVG N ++    
Sbjct: 182 NAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG-- 239

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               ++VGDVDF E  K +  +TPVPGGVGPMT+AMLL NT+  AK 
Sbjct: 240 ----KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKN 282

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A Length = 281

 Score =  447 bits (1152), Expect = e-160
 Identities = 127/289 (43%), Positives = 174/289 (60%), Gaps = 13/289 (4%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A ++DGKA    I  ++ + V  L    G+ PGL  ++VG    SQ+YV  K   CA+VG
Sbjct: 3   AIMLDGKATRDEIFGDLKQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
           I S   DLP  +S A L   + ELN  PD  G +VQLPLPKH++E   L  +   KD DG
Sbjct: 62  ITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADG 121

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
            HP N+G+L +    P  LPCTP+G + LL+R  ++I G   VV+GR   VG P+ LLL 
Sbjct: 122 LHPTNLGRLVL--GTPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLT 179

Query: 189 K--ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
           +   +ATVT+ H+ T D  ++ R+ADIV+AA G A ++    ++PGAAVIDVG +  DD 
Sbjct: 180 RRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD- 238

Query: 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
                  LVGDV   +  ++AG V+P PGGVGP+T A LL N ++ A+R
Sbjct: 239 ------GLVGDVHP-DVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER 280

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A Length = 276

 Score =  441 bits (1138), Expect = e-158
 Identities = 84/285 (29%), Positives = 151/285 (52%), Gaps = 16/285 (5%)

Query: 11  IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
           I+ G+ +A+     +   +    E+ G  P L ++ +G  + +  Y   K +   ++GI 
Sbjct: 3   ILRGEEIAEKKAENLHGII----ERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIA 58

Query: 71  SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
             D++  + +S  +L+ ++ +L   P ++GI+++ PLPK  +  +++  I   KDVD   
Sbjct: 59  V-DLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALS 117

Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
           P N G +A+       +P TP+  ++++   G         +V RS +VG P+S++LL  
Sbjct: 118 PYNQGLIAL--NREFLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNR 173

Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
           + TV++ HS T D  S+ R + IV+ A G+   +    + PG+ VIDVG N V+D     
Sbjct: 174 NYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVND----- 228

Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
             ++VGD +F +  +    +TPVPGGVGP+T   +L N +  A+ 
Sbjct: 229 --KVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEF 271

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* Length = 320

 Score =  365 bits (939), Expect = e-127
 Identities = 71/332 (21%), Positives = 121/332 (36%), Gaps = 64/332 (19%)

Query: 7   QKATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACA 65
           +    I    VA+T  +EI   V    + + G+ P L   +      ++ Y +  +K   
Sbjct: 3   KPGRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSE 62

Query: 66  EVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKD 125
            +G +    DL     +  L   + + N    V+GI+V  P+  +  ++ +   +  EKD
Sbjct: 63  SMGFRY---DLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKD 119

Query: 126 VDGFHPLNIGKL-------AMKGRDPLFLPCTPKGCLELLKR---------SGVTIKGKR 169
           V+G + +    L         + R    LPCTP   +++L+           G  + GK+
Sbjct: 120 VEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKK 179

Query: 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD-------------------------P 204
            +V+ RS IVG P++ LL    ATV  V  +                             
Sbjct: 180 CIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLL 239

Query: 205 ESIVREADIVIAAAGQA-MMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEA 263
           +    ++D+VI             +IK GA  I+                        + 
Sbjct: 240 KKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACT---------------KNFSDDV 284

Query: 264 CKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
            + A    P+ G V   T+AMLLRN L   + 
Sbjct: 285 KEKASLYVPMTGKV---TIAMLLRNMLRLVRN 313

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 31/154 (20%)

Query: 156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH----------------S 199
             ++ +  TI G    V+G   + G+ V+       A V +                   
Sbjct: 144 MAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIAEMGMEPF 202

Query: 200 HTTDPESIVREADIVIAAAGQAMMIKG---SWIKPGAAVIDVGTNAVDDSTKKSGYRLVG 256
           H +     +R+ D+ I     A+++     + +     VID+           S      
Sbjct: 203 HISKAAQELRDVDVCINTI-PALVVTANVLAEMPSHTFVIDLA----------SKPGGTD 251

Query: 257 DVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTL 290
                +    A  V  +PG V P T   +L + L
Sbjct: 252 FRYAEKRGIKALLVPGLPGIVAPKTAGRILADVL 285

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 43/160 (26%)

Query: 156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV----------------HS 199
             ++ +  TI G +  V+G     G+ ++       A V +                   
Sbjct: 146 LAIQHTDYTIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPF 204

Query: 200 HTTDPESIVREADIVIAAA-----GQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRL 254
           HT + +  V++ DI I         Q ++   S + P   ++D+   A            
Sbjct: 205 HTDELKEHVKDIDICINTIPSMILNQTVL---SSMTPKTLILDL---ASRP--------- 249

Query: 255 VGDVDFHEACKVAG----CVTPVPGGVGPMTVAMLLRNTL 290
            G  DF +  +  G        +PG V P T   +L N L
Sbjct: 250 -GGTDF-KYAEKQGIKALLAPGLPGIVAPKTAGQILANVL 287

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A Length = 322

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 201 TTDPESIVREADIVIAA-AGQAMMIKGSWIKPGAAVIDVGTNA-----VDDSTKKSGYRL 254
           +  P       D+++     +  ++K  W++ G  +  +G +      +D    K   ++
Sbjct: 178 SVQPAEEASRCDVLVTTTPSRKPVVKAEWVEEGTHINAIGADGPGKQELDVEILKKA-KI 236

Query: 255 VGDVDFHEACKVAG 268
           V  VD  E  K  G
Sbjct: 237 V--VDDLEQAKHGG 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	100.0
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	100.0
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	100.0
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	100.0
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	100.0
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	100.0
3l07_A	285	Bifunctional protein fold; structural genomics, ID	100.0
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	100.0
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	100.0
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	99.97
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	99.95
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	99.95
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	99.95
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.94
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	99.94
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.94
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	99.93
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	99.91
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	99.91
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	99.91
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	99.9
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	99.89
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	99.87
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	99.86
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	99.85
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	99.85
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	99.56
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.52
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.12
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.1
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.02
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.97
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.9
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.8
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.8
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.72
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.7
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.54
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	98.53
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.48
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.48
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.43
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.41
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.41
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.4
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.27
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.25
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.25
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.19
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.17
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.16
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.16
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.12
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.12
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.12
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.11
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.11
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.1
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.1
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.1
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.09
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.08
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.08
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.08
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.08
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.08
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.08
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.07
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.06
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.05
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.04
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.03
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.02
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.01
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.99
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.97
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.96
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.95
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.95
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.93
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	97.93
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.89
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.88
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.88
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.87
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.86
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.85
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.84
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	97.7
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.69
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.68
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.66
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.66
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.63
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.6
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.58
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.56
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.55
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.53
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.52
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.51
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.49
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.49
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.45
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.41
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.4
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.38
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.37
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.37
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.37
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.33
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.26
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.25
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.22
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	97.18
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.17
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.17
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.16
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.13
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.11
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.08
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.07
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.06
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.04
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.94
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.94
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.92
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.97
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.91
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.91
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.89
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.88
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.87
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.85
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.84
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.81
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.81
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.79
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.76
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.76
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.75
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.73
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.72
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.7
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.68
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.68
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.64
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.64
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.63
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.63
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.63
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.62
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.61
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.6
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.59
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.58
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.58
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	96.58
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.57
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.55
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.55
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.54
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.53
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.53
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.53
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.52
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	96.52
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.52
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.51
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.5
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.49
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.49
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.48
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.47
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.47
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.47
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	96.47
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.46
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.45
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.45
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	96.45
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.44
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	96.44
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.44
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.43
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.43
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.42
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.42
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.41
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.41
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.41
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.41
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.4
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.4
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.4
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.39
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.39
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.37
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.36
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.36
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.36
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.36
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.36
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.35
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.35
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.35
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	96.34
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.34
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.33
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.31
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.31
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.31
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.3
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.29
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.29
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.27
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.27
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.26
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.26
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.26
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.25
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.25
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.22
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.22
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.22
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.22
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.19
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.19
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.17
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	96.16
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.14
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.14
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.11
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.11
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.11
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.1
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.1
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.1
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.09
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.09
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.08
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.08
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.07
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.07
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.06
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.05
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.05
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.04
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.04
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.03
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.02
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.02
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.02
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.01
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.0
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.99
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.99
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.99
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.99
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.99
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.99
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.98
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.98
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.97
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.97
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.97
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	95.97
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.97
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.96
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	95.96
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.95
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.95
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.94
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.94
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	95.91
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.89
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	95.89
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	95.89
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.89
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	95.89
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	95.89
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	95.88
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	95.88
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.88
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.87
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.87
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	95.86
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	95.86
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	95.86
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	95.85
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.85
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	95.85
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.83
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.83
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.82
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	95.81
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.81
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.8
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.79
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.77
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.77
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	95.77
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.75
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	95.74
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.74
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.73
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.73
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.72
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.72
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.71
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.71
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.71
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.71
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.7
1xq1_A	266	Putative tropinone reducatse; structural genomics,	95.69
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.67
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.67
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	95.66
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.65
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.65
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.65
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.64
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	95.63
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.63
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.63
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	95.59
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.59
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	95.58
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	95.58
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	95.57
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.56
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.55
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.55
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.55
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.54
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.53
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.53
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	95.52
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.52
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	95.52
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	95.51
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.5
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	95.5
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.5
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	95.49
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	95.49
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.49
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.48
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	95.48
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	95.48
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.46
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.46
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.45
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.45
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.44
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	95.43
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	95.43
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.42
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	95.42
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	95.42
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.42
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	95.41
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.41
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.41
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	95.4
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.4
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	95.38
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.37
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	95.37
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.37
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	95.37
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.36
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	95.35
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	95.35
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	95.34
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.32
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.32
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	95.31
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.31
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.31
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.31
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.3
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.3
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	95.29
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.28
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.27
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	95.26
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	95.26
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.24
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.24
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.24
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	95.24
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	95.23
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	95.23
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.23
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.23
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.22
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	95.21
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	95.21
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.2
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.18
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	95.17
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	95.16
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.16
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.16
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	95.16
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	95.15
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.15
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.13
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.12
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.12
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	95.12
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.11
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	95.1
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.1
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.1
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.09
3imf_A	257	Short chain dehydrogenase; structural genomics, in	95.08
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.07
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	95.07
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.05
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.05
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.04
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	95.04
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	95.03
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.03
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.02
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.0
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.0
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	95.0
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	95.0
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	94.98
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.98
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	94.97
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	94.97
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.97
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.96
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.96
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	94.95
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.94
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	94.94
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.93
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	94.92
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	94.91
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	94.91
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.9
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	94.9
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.87
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	94.87
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	94.87
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	94.86
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	94.86
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.86
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.86
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	94.85
4dqx_A	277	Probable oxidoreductase protein; structural genomi	94.85
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	94.85
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.84
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	94.84
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.83
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	94.82
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	94.82
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.82
2duw_A	145	Putative COA-binding protein; ligand binding prote	94.81
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	94.81
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	94.81
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.81
4f6c_A	427	AUSA reductase domain protein; thioester reductase	94.78
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	94.78
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	94.77
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.77
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.76
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	94.76
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	94.74
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	94.74
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	94.73
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	94.71
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.7
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	94.7
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	94.68
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	94.67
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	94.67
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	94.66
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	94.65
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	94.65
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.65
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	94.64
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.64
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	94.64
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	94.64
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	94.63
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.61
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.61
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	94.59
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.59
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	94.58
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	94.58
1xkq_A	280	Short-chain reductase family member (5D234); parra	94.58

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=100.00  E-value=9.8e-101  Score=714.35  Aligned_cols=284  Identities=42%  Similarity=0.753  Sum_probs=276.4

Q ss_pred             cccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHH
Q 022295            6 DQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL   85 (299)
Q Consensus         6 ~~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el   85 (299)
                      .+||+|||||++|++|++++++++++|+++.|++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||
T Consensus        20 ~~Ma~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~el   99 (303)
T 4b4u_A           20 GHMALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQL   99 (303)
T ss_dssp             --CCEECCHHHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHH
T ss_pred             CCCCEEeehHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHH
Confidence            45899999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCc
Q 022295           86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTI  165 (299)
Q Consensus        86 ~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l  165 (299)
                      ++.|++||+||+|||||||+|||+|+|+++++++|+|+||||||||.|.|+|+.|  .+.|+||||.||+++|++|++++
T Consensus       100 l~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDG~hp~N~G~L~~g--~~~~~PcTp~gv~~lL~~~~i~l  177 (303)
T 4b4u_A          100 LAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIEI  177 (303)
T ss_dssp             HHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGCTTCCCHHHHHHHHTT--CCCCCCHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcccccCccCcchHHHhcCC--CCcccCccHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999999999999999999999999999999987  67899999999999999999999


Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~  245 (299)
                      +||+++|||||++||||+|++|+++|||||+|||+|+|+.+++++|||||+|+|+|++|++||+|||++|||+|+|+.++
T Consensus       178 ~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T~dl~~~~~~ADIvV~A~G~p~~i~~d~vk~GavVIDVGin~~~~  257 (303)
T 4b4u_A          178 AGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRDG  257 (303)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHHTCSEEEECSCSTTCBCGGGSCTTCEEEECCCBCCTT
T ss_pred             CCCEEEEEeccccccchHHHHHHhcCCEEEEecCCCCCHHHHhhcCCeEEeccCCCCccccccccCCCEEEEeceecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998654


Q ss_pred             CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                             +++|||||+++++++++||||||||||||++|||+|+++|+|++.|
T Consensus       258 -------~~vGDVdf~~v~~~a~~iTPVPGGVGPmTiamLl~Ntv~aa~r~~G  303 (303)
T 4b4u_A          258 -------GGVGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEKALG  303 (303)
T ss_dssp             -------SCBCSBCCTTGGGTCSEECCSSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -------CeECCcCHHHHhhhCcEECCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence                   6999999999999999999999999999999999999999999875

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=100.00  E-value=2.8e-96  Score=685.66  Aligned_cols=293  Identities=57%  Similarity=0.924  Sum_probs=282.3

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYG-KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL   85 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~-~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el   85 (299)
                      +|+++||||++|++|++++++++++|+++++ ++|+||+|+||+||+|..|+++|.|+|+++||++++++||++++|+||
T Consensus         4 ~ma~iidGk~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~el   83 (300)
T 4a26_A            4 PSAQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVL   83 (300)
T ss_dssp             -CCEECCHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHH
T ss_pred             cccEEeehHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            4689999999999999999999999998877 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCc
Q 022295           86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTI  165 (299)
Q Consensus        86 ~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l  165 (299)
                      ++.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||++|.|+|+.|+..++|+||||.|++++|++|++++
T Consensus        84 l~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~~PcTp~gv~~lL~~~~i~l  163 (300)
T 4a26_A           84 EVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEM  163 (300)
T ss_dssp             HHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHCTTCCCSCCCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCCcceEEEeecCCCcCCCCCCCHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999875457899999999999999999999


Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChh--hhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPE--SIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~--~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~  243 (299)
                      +||+|+|||||++||+|+|++|+++||+||+|||+|.+++  +++++|||||+|+|.|++|+++|+|||++|||+|+|+.
T Consensus       164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~  243 (300)
T 4a26_A          164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPV  243 (300)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHHHTCSEEEECSCCTTCBCGGGSCTTCEEEECCCEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhhccCCEEEECCCCCCCCcHHhcCCCcEEEEEeccCC
Confidence            9999999999999999999999999999999999999999  99999999999999999999999999999999999998


Q ss_pred             CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhcC
Q 022295          244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL  299 (299)
Q Consensus       244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~~  299 (299)
                      +++++++|+|+||||||+++++++++||||||||||||++|||+|+++++++|.++
T Consensus       244 ~~~~~~~g~kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~~~  299 (300)
T 4a26_A          244 PDPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKAALGV  299 (300)
T ss_dssp             SCSCSTTSCEEECSBCHHHHTTTCSEEECTTTSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCcccCCceeecCccHHHHHhhceEeCCCCCcChHHHHHHHHHHHHHHHHHHhcC
Confidence            87665667799999999999999999999999999999999999999999998753

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=100.00  E-value=1.5e-95  Score=676.81  Aligned_cols=283  Identities=50%  Similarity=0.781  Sum_probs=274.6

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      ||+++||||++|++|++++++++++|+++.+++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus         1 ~ma~iidGk~ia~~i~~~~~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell   80 (288)
T 1b0a_A            1 MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELL   80 (288)
T ss_dssp             -CCEECCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHH
T ss_pred             CCCeEecHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            67899999999999999999999999987457899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+||||||||+|.|+|+.|  .++|+||||.|++++|++|+++++
T Consensus        81 ~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i~l~  158 (288)
T 1b0a_A           81 ELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTF  158 (288)
T ss_dssp             HHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCT
T ss_pred             HHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccchhHHhCC--CCCCCCCcHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999988  578999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      ||+|+|||||++||+|+|++|+++|||||+|||+|.++.+++++|||||+|+|+|++|+++|+|||++|||+|+++.+++
T Consensus       159 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~lI~~~~vk~GavVIDVgi~r~~~g  238 (288)
T 1b0a_A          159 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG  238 (288)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEECTTS
T ss_pred             CCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHhccCCEEEECCCCcCcCCHHHcCCCcEEEEccCCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997653


Q ss_pred             ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                            |+||||||+++++++++||||||||||||++|||+|+++++++|.
T Consensus       239 ------~l~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~  283 (288)
T 1b0a_A          239 ------KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYH  283 (288)
T ss_dssp             ------CEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ------CccCCcCHHHHhhhccEecCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence                  799999999999999999999999999999999999999999875

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=100.00  E-value=1.7e-95  Score=675.99  Aligned_cols=283  Identities=51%  Similarity=0.802  Sum_probs=274.9

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      |++++||||++|++|++++++++++|+++.+++|+||+|+||+||+|.+|+++|.|+|+++||++++++||++++|+||+
T Consensus         3 m~a~iidGk~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell   82 (286)
T 4a5o_A            3 MTAQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLL   82 (286)
T ss_dssp             -CCEECCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHH
T ss_pred             cccEEeeHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            55789999999999999999999999988678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK  166 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~  166 (299)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||++|.|+|+.|  .++|+||||.|++++|++|+++++
T Consensus        83 ~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~g~l~~g--~~~~~PcTp~gv~~lL~~~~i~l~  160 (286)
T 4a5o_A           83 ALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQR--MPLLRPCTPKGIMTLLASTGADLY  160 (286)
T ss_dssp             HHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCT
T ss_pred             HHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999988  578999999999999999999999


Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      ||+|+|||||++||+|+|++|+++|||||+|||+|+++++++++|||||+|+|+|++|+++|+|||++|||+|+|+.+++
T Consensus       161 Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~~g  240 (286)
T 4a5o_A          161 GMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADG  240 (286)
T ss_dssp             TCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHTCSEEEECCCCTTCBCGGGSCTTCEEEECCSCSSCCC
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHhccCCEEEECCCCCCCCCHHHcCCCeEEEEecccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998653


Q ss_pred             ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                            |+||||||+++.+++++||||||||||||++|||+|+++++++|.
T Consensus       241 ------kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~aa~~~~  285 (286)
T 4a5o_A          241 ------RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLH  285 (286)
T ss_dssp             ------CSSCSBCHHHHHHHCSEECCSSCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------CcccCccHHHHHhhceEeCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence                  899999999999999999999999999999999999999999875

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=100.00  E-value=1.6e-95  Score=680.42  Aligned_cols=292  Identities=50%  Similarity=0.811  Sum_probs=273.5

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL   85 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~-~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el   85 (299)
                      |++++||||++|++|++++++++++|+++. +++|+||+|+||+||+|..|+++|.|+|+++||+++.++||+++||+||
T Consensus         2 m~a~iidGk~ia~~i~~~~~~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~el   81 (301)
T 1a4i_A            2 APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEV   81 (301)
T ss_dssp             CCCEECCHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHH
T ss_pred             CCCEEeeHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence            458899999999999999999999999875 4789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCceEEEEeCCCCCC--CCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCC
Q 022295           86 ISKVHELNVMPDVHGILVQLPLPKH--INEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGV  163 (299)
Q Consensus        86 ~~~i~~ln~d~~v~GIlvq~Plp~~--i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~  163 (299)
                      ++.|++||+|++|||||||+|||+|  +|+++++++|+|+||||||||.|.|+|+.|...++|+||||.|++++|++|++
T Consensus        82 l~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~KDVDG~hp~N~G~l~~g~~~~~~~PcTp~gi~~ll~~~~i  161 (301)
T 1a4i_A           82 MKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGV  161 (301)
T ss_dssp             HHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCCCCccCCChhhHHHHhcCCCCCCccCchHHHHHHHHHHcCC
Confidence            9999999999999999999999999  99999999999999999999999999998843478999999999999999999


Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~  243 (299)
                      +++||+|+|||||++||+|+|++|+++|||||+|||+|.++.+++++|||||+|+|+|++|+++|+|||++|||+|+|+.
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~  241 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYV  241 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC-
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHhccCCEEEECCCCcccCCHHHcCCCcEEEEccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +++++++|+|+||||||+++.+++++||||||||||||++|||+|+++++++|..
T Consensus       242 ~d~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGpmTiamLl~Ntv~aa~~~~~  296 (301)
T 1a4i_A          242 PDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE  296 (301)
T ss_dssp             ---------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccCCCeeeccccHHHhhhhceEeCCCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence            6644445568999999999999999999999999999999999999999998763

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=100.00  E-value=8.8e-95  Score=671.34  Aligned_cols=282  Identities=47%  Similarity=0.780  Sum_probs=273.3

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI   86 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~   86 (299)
                      +++++||||++|++|++++++++++|+++ +.+|+||+|+||+||+|..|+++|.|+|+++||++++++||++++|+||+
T Consensus         2 ~~~~iidGk~~a~~i~~~~~~~v~~l~~~-~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell   80 (285)
T 3p2o_A            2 NAMTLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELL   80 (285)
T ss_dssp             CCCEECCHHHHHHHHHHHHHHHHHHHHTT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHH
T ss_pred             CCCEEeehHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            45789999999999999999999999876 56999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCc-cccCCHHHHHHHHHhhCCCc
Q 022295           87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPL-FLPCTPKGCLELLKRSGVTI  165 (299)
Q Consensus        87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~-~~PcT~~av~~ll~~~~~~l  165 (299)
                      +.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||++|.|+|+.|  .+. |+||||+|++++|++|++++
T Consensus        81 ~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~~~~N~g~l~~g--~~~g~~PcTp~gv~~lL~~~~i~l  158 (285)
T 3p2o_A           81 ALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLG--LESGFLPCTPLGVMKLLKAYEIDL  158 (285)
T ss_dssp             HHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCSHHHHHHHHTT--CCSSCCCHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccCCHhhhhhhhcC--CCCCCCCCCHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999999999999988  456 99999999999999999999


Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~  245 (299)
                      +||+|+|||||++||+|+|++|+++|||||+|||+|+++++++++|||||+|+|+|++|+++|+|||++|||+|+|+.++
T Consensus       159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~~~  238 (285)
T 3p2o_A          159 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLES  238 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHTTCSEEEECSSCTTCBCGGGSCTTEEEEECCCEECTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHhhcCCEEEECCCCCCcCCHHHcCCCeEEEEeccCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999866


Q ss_pred             CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      +      |+||||||+++.+++++||||||||||||++|||+|+++++++|.
T Consensus       239 g------kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~a~~~~~  284 (285)
T 3p2o_A          239 G------KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRL  284 (285)
T ss_dssp             S------CEECSBCHHHHTTTEEEECCSSSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             C------CEeccccHHHHHhhheEeCCCCCcCcHHHHHHHHHHHHHHHHHhh
Confidence            3      899999999999999999999999999999999999999999875

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=100.00  E-value=4.7e-94  Score=666.48  Aligned_cols=281  Identities=47%  Similarity=0.758  Sum_probs=272.8

Q ss_pred             ceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHH
Q 022295            9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISK   88 (299)
Q Consensus         9 ~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~   88 (299)
                      +++||||++|++|++++++++++|+++.+++|+||+|+||+||+|..|+++|.|+|+++||++++++||++++|+||++.
T Consensus         4 ~~ildGk~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~   83 (285)
T 3l07_A            4 MILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLEL   83 (285)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHH
T ss_pred             CEEeehHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            56999999999999999999999988767899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCc
Q 022295           89 VHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGK  168 (299)
Q Consensus        89 i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk  168 (299)
                      |++||+|++|||||||+|||+|+|+++++++|+|+|||||||++|.|+|+.|. .++|+||||.|++++|++|+++++||
T Consensus        84 I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~-~~~~~PcTp~gv~~lL~~~~i~l~Gk  162 (285)
T 3l07_A           84 IDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGA  162 (285)
T ss_dssp             HHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCSHHHHHHHHHTC-TTCCCCHHHHHHHHHHHHTTCCCTTC
T ss_pred             HHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCChhheeehhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999882 27899999999999999999999999


Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCcc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK  248 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~  248 (299)
                      +|+|||||++||+|+|++|+++|||||+|||+|.++.+++++|||||+|+|+|++|+++|+|||++|||+|+|+.+    
T Consensus       163 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~----  238 (285)
T 3l07_A          163 YAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD----  238 (285)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCEEET----
T ss_pred             EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEECCCCCCCCCHHHcCCCcEEEEecccCcC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999975    


Q ss_pred             CCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       249 ~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                        | |+||||||+++++++++||||||||||||++|||+|++++++++.
T Consensus       239 --g-~l~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~a~~~~~  284 (285)
T 3l07_A          239 --G-KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN  284 (285)
T ss_dssp             --T-EEECSBCHHHHTTTCSEECCSSSSSHHHHHHHHHHHHHHHHHHTC
T ss_pred             --C-ceecCccHHHHHhhheEeCCCCCcChHHHHHHHHHHHHHHHHHhh
Confidence              2 899999999999999999999999999999999999999999875

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=100.00  E-value=1.9e-92  Score=652.63  Aligned_cols=272  Identities=30%  Similarity=0.589  Sum_probs=264.6

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV   89 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i   89 (299)
                      ++||||++|++|++++++++++|    +++|+||+|+||+||+|..|+++|.|+|+++|| ++.++||+++||+||++.|
T Consensus         2 ~ildGk~~a~~i~~~~~~~v~~l----~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I   76 (276)
T 3ngx_A            2 KILRGEEIAEKKAENLHGIIERS----GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRI   76 (276)
T ss_dssp             CBCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHH
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHH
Confidence            48999999999999999999987    789999999999999999999999999999999 9999999999999999999


Q ss_pred             HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295           90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR  169 (299)
Q Consensus        90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~  169 (299)
                      ++||+|++|||||||+|||+|+|+++++++|+|+||||||||+|.|+|+.|  .++|+||||+|++++|++|+  ++||+
T Consensus        77 ~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~KDVDG~~p~n~G~l~~g--~~~~~PcTp~gv~~lL~~~~--l~Gk~  152 (276)
T 3ngx_A           77 DDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIALN--REFLVPATPRAVIDIMDYYG--YHENT  152 (276)
T ss_dssp             HHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGGGBTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHHT--CCSCE
T ss_pred             HHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCCCcccCCCccchhhhhcC--CCCCCCCcHHHHHHHHHHhC--cCCCE
Confidence            999999999999999999999999999999999999999999999999998  67899999999999999999  99999


Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK  249 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~  249 (299)
                      |+|||||++||+|+|++|+++||+||+|||+|.++++++++|||||+|+|+|++|+++|+|||++|||+|+++ +++   
T Consensus       153 vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~-~~g---  228 (276)
T 3ngx_A          153 VTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINY-VND---  228 (276)
T ss_dssp             EEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHHSSEEEECSSCTTCBCGGGCCTTCEEEECCCEE-ETT---
T ss_pred             EEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhhccCCEEEECCCCCccccHhhccCCcEEEEeccCc-cCC---
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 442   


Q ss_pred             CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                         |+||||||+++++++++||||||||||||++|||+|++++++++.
T Consensus       229 ---kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~n~v~a~~~~~  273 (276)
T 3ngx_A          229 ---KVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEFQK  273 (276)
T ss_dssp             ---EEECSBCHHHHHTTSSEECCTTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ceeccccHHHHhhhceEeCCCCCcChHHHHHHHHHHHHHHHHHHh
Confidence               899999999999999999999999999999999999999998654

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=100.00  E-value=8.5e-92  Score=649.74  Aligned_cols=276  Identities=46%  Similarity=0.792  Sum_probs=268.9

Q ss_pred             ceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHH
Q 022295            9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISK   88 (299)
Q Consensus         9 ~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~   88 (299)
                      +++||||++|++|++++++++++|+++ |++|+||+|+||+||+|..|+++|.|+|+++||+++.++||+++||+||++.
T Consensus         3 a~iidGk~ia~~i~~~~~~~v~~l~~~-g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~   81 (281)
T 2c2x_A            3 AIMLDGKATRDEIFGDLKQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNET   81 (281)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHH
T ss_pred             CEEeeHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            579999999999999999999999877 7889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCc
Q 022295           89 VHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGK  168 (299)
Q Consensus        89 i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk  168 (299)
                      |++||+|++|||||||+|||+|+|+++++++|+|+||||||||+|.|+|+.|  .++|+||||.|++++|++|+++++||
T Consensus        82 i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i~l~gk  159 (281)
T 2c2x_A           82 IDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDISIAGA  159 (281)
T ss_dssp             HHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGBTTSCCHHHHHHHHHT--CCCCCCHHHHHHHHHHHHTTCCCTTC
T ss_pred             HHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCccCCccCCChhhHHHHhCC--CCCCCCChHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999988  57899999999999999999999999


Q ss_pred             EEEEEcCCccchHHHHHHHhhC--CCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKA--DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS  246 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~--gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~  246 (299)
                      +|+|||||++||+|+|++|+++  |||||+|||+|.++.+++++|||||+|+|+|++|+++|+|||++|||+|+++.++ 
T Consensus       160 ~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~r~~~-  238 (281)
T 2c2x_A          160 HVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD-  238 (281)
T ss_dssp             EEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHHHHHTTCSEEEECSCCTTCBCGGGSCTTCEEEECCEEEETT-
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEccCCCCCC-
Confidence            9999999999999999999999  9999999999999999999999999999999999999999999999999999754 


Q ss_pred             ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHH
Q 022295          247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR  295 (299)
Q Consensus       247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~  295 (299)
                            .+||||| +++.+++++||||||||||||++|||+|+++++++
T Consensus       239 ------glvGDVd-~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~aa~~  280 (281)
T 2c2x_A          239 ------GLVGDVH-PDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER  280 (281)
T ss_dssp             ------EEEESBC-GGGGGTCSEEECSSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             ------CccCccc-cchhhheeeecCCCCCccHHHHHHHHHHHHHHHHh
Confidence                  2999999 99999999999999999999999999999999985

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=100.00  E-value=1.7e-76  Score=558.30  Aligned_cols=268  Identities=26%  Similarity=0.363  Sum_probs=250.3

Q ss_pred             ccceeeccHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHH
Q 022295            7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYG-KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL   85 (299)
Q Consensus         7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~-~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el   85 (299)
                      |++++||||++|++|++++++++++|+++.+ ++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++   +||
T Consensus         3 ~~~~~idgk~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~---~~l   79 (320)
T 1edz_A            3 KPGRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIEDK---DFL   79 (320)
T ss_dssp             CCCEECCHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSSG---GGH
T ss_pred             CCCEEeeHHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCCh---HHH
Confidence            5689999999999999999999999988743 789999999999999999999999999999999999999975   679


Q ss_pred             HHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCC-------CCccccCCHHHHHHHH
Q 022295           86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGR-------DPLFLPCTPKGCLELL  158 (299)
Q Consensus        86 ~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~-------~~~~~PcT~~av~~ll  158 (299)
                      ++.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|.|+|+.|..       .++|+||||.|++++|
T Consensus        80 ~~~i~~lN~d~~v~GIlvqlPlp~~~~~~~i~~~I~p~KDVDG~~~~n~g~l~~~~~~l~~~~~~~~~~PcTp~a~v~ll  159 (320)
T 1edz_A           80 EEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKIL  159 (320)
T ss_dssp             HHHHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTTTBTTCCSHHHHHHHHTTCCBSSSSSCSBCCCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCcCChhhhHHHhcCCccccccccCCCcCCCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998721       2589999999999999


Q ss_pred             Hh---------hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC------------------C-----C--CCh
Q 022295          159 KR---------SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS------------------H-----T--TDP  204 (299)
Q Consensus       159 ~~---------~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~------------------~-----t--~~l  204 (299)
                      ++         +++++.||+|+|||+|++||+|+|++|+++||+||+|++                  .     +  .++
T Consensus       160 ~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L  239 (320)
T 1edz_A          160 EFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLL  239 (320)
T ss_dssp             HHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHH
T ss_pred             HhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHH
Confidence            99         899999999999999999999999999999999999954                  3     3  689


Q ss_pred             hhhccCCcEEEEecCCCCc-CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCc-hhhhhhhceeccCCCCccHHHH
Q 022295          205 ESIVREADIVIAAAGQAMM-IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDF-HEACKVAGCVTPVPGGVGPMTV  282 (299)
Q Consensus       205 ~~~~~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf-~~~~~~a~~iTPVPGGVGp~T~  282 (299)
                      .+++++|||||+|||+|++ |+.+|+|||++|||+|+++                || +++.+++++||||   |||||+
T Consensus       240 ~e~l~~ADIVIsAtg~p~~vI~~e~vk~GavVIDVgi~r----------------D~d~~v~~~a~~itPv---VGpmT~  300 (320)
T 1edz_A          240 KKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTK----------------NFSDDVKEKASLYVPM---TGKVTI  300 (320)
T ss_dssp             HHHHHHCSEEEECCCCTTCCBCTTTSCTTEEEEECSSSC----------------CBCGGGGTTEEEEESC---CHHHHH
T ss_pred             HHHhccCCEEEECCCCCcceeCHHHcCCCeEEEEcCCCc----------------ccchhHHhhCCeeCCC---ccHHHH
Confidence            9999999999999999998 9999999999999999875                24 5788999999998   999999


Q ss_pred             HHHHHHHHHHHHHH
Q 022295          283 AMLLRNTLDGAKRV  296 (299)
Q Consensus       283 a~L~~n~v~a~~~~  296 (299)
                      +|||+|++++++++
T Consensus       301 a~Ll~n~~~a~~~~  314 (320)
T 1edz_A          301 AMLLRNMLRLVRNV  314 (320)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999854

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=99.97  E-value=7.9e-31  Score=241.05  Aligned_cols=219  Identities=20%  Similarity=0.234  Sum_probs=183.9

Q ss_pred             ECCCcccHHHHH-HHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCcc-c
Q 022295           47 VGGRKDSQSYVS-MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLE-K  124 (299)
Q Consensus        47 vg~d~~s~~Y~~-~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~-K  124 (299)
                      +| +|-+++|-- +++++|+++|+++.|..|+  +++++|.+.|+.++ +++++|++||+|+|+++  ..+++.++|. |
T Consensus         7 iG-~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~--~~~~~l~~~i~~l~-~~~~~G~nVT~P~K~~~--~~~ld~~~~~A~   80 (271)
T 1nyt_A            7 FG-NPIAHSKSPFIHQQFAQQLNIEHPYGRVL--APINDFINTLNAFF-SAGGKGANVTVPFKEEA--FARADELTERAA   80 (271)
T ss_dssp             EE-SSCTTCSHHHHHHHHHHHHTCCCCEEEEE--CCTTCHHHHHHHHH-HTTCCEEEECTTCHHHH--HHHCSEECHHHH
T ss_pred             EC-CCcccccCHHHHHHHHHHCCCCcEEEEEE--cCHHHHHHHHHHHH-hCCCCeEEEccCCHHHH--HHHHhhcCHHHH
Confidence            56 788888887 8999999999999999995  77889999999999 57999999999999887  7788999994 9


Q ss_pred             cCCCCCcc---cccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          125 DVDGFHPL---NIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       125 DVDg~~~~---n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ++++++.+   +.|++. |++      +++.|+++.|++++++++||+++|+|+|++ |++++..|++.|++|++++++.
T Consensus        81 ~igavNti~~~~~g~l~-G~n------tD~~G~~~~L~~~~~~l~~k~vlViGaGg~-g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A           81 LAGAVNTLMRLEDGRLL-GDN------TDGVGLLSDLERLSFIRPGLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             HHTCCSEEEECTTSCEE-EEC------CHHHHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSH
T ss_pred             HhCCceEEEEcCCCeEE-EeC------CCHHHHHHHHHhcCcCcCCCEEEEECCcHH-HHHHHHHHHHcCCEEEEEECCH
Confidence            99999876   567775 643      559999999999999999999999999885 9999999999999999998763


Q ss_pred             CC---hhh--------------hc--cCCcEEEEecCCCCc-----CCCCccCCCeEEEEeeccCCCCCccCCCceeecc
Q 022295          202 TD---PES--------------IV--READIVIAAAGQAMM-----IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGD  257 (299)
Q Consensus       202 ~~---l~~--------------~~--~~ADIVIsa~g~p~~-----i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GD  257 (299)
                      ..   +.+              .+  .++|+||+++|.+..     ++.++++++.+|+|+.|++.++            
T Consensus       153 ~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~t------------  220 (271)
T 1nyt_A          153 SRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKT------------  220 (271)
T ss_dssp             HHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCC------------
T ss_pred             HHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeccCCcCC------------
Confidence            21   111              12  379999999996543     6778899999999999987544            


Q ss_pred             CCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          258 VDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       258 vdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                       .|...++..++ +|+.+|.+     ||++|.+++++.|++
T Consensus       221 -~~~~~a~~~G~-~~~~~G~~-----mLv~Q~~~af~~w~g  254 (271)
T 1nyt_A          221 -PFLAWCEQRGS-KRNADGLG-----MLVAQAAHAFLLWHG  254 (271)
T ss_dssp             -HHHHHHHHTTC-CEEECTHH-----HHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHcCC-CeecCCHH-----HHHHHHHHHHHHHhC
Confidence             26667777886 43666766     999999999999986

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=99.95  E-value=9.8e-29  Score=228.67  Aligned_cols=218  Identities=19%  Similarity=0.242  Sum_probs=180.2

Q ss_pred             EECCCcccHHHHHHH-HHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-c
Q 022295           46 IVGGRKDSQSYVSMK-RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-E  123 (299)
Q Consensus        46 ~vg~d~~s~~Y~~~k-~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~  123 (299)
                      .+| +|.+++|-..+ +++|+++|+++.|..|+  +++++|.+.|+.||++ +++|++||+|+|+++  ..+++.++| .
T Consensus        16 viG-~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~--~~~~~l~~~i~~l~~~-~~~G~nVtiP~k~~i--~~~~d~~~~~a   89 (287)
T 1nvt_A           16 LIG-HPVEHSFSPIMHNAAFKDKGLNYVYVAFD--VLPENLKYVIDGAKAL-GIVGFNVTIPHKIEI--MKYLDEIDKDA   89 (287)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEE--CCGGGGGGHHHHHHHH-TCCEEEECTTSTTGG--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCcEEEEEE--cCHHHHHHHHHHHHhC-CCCEEEEccCCHHHH--HHHHHhcCHHH
Confidence            457 88888888755 99999999999999994  7889999999999964 899999999999988  678888889 6


Q ss_pred             ccCCCCCcc--cccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          124 KDVDGFHPL--NIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       124 KDVDg~~~~--n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ++++++++.  +.|+++ |+++      |+.|+++.|++++++++||+++|+|+|+ +|++++..|+++| +|++++++.
T Consensus        90 ~~igavnt~~~~~g~l~-g~nT------d~~G~~~~L~~~~~~l~~k~vlV~GaGg-iG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A           90 QLIGAVNTIKIEDGKAI-GYNT------DGIGARMALEEEIGRVKDKNIVIYGAGG-AARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             HHHTCCCEEEEETTEEE-EECC------HHHHHHHHHHHHHCCCCSCEEEEECCSH-HHHHHHHHHTSSS-EEEEECSSH
T ss_pred             HHhCceeeEEeeCCEEE-EecC------CHHHHHHHHHHhCCCcCCCEEEEECchH-HHHHHHHHHHHCC-CEEEEECCH
Confidence            999998765  467776 6433      6899999999999999999999999996 5999999999999 999999864


Q ss_pred             CC---h---------------------hhhccCCcEEEEecCCCC-------cC-CCCccCCCeEEEEeeccCCCCCccC
Q 022295          202 TD---P---------------------ESIVREADIVIAAAGQAM-------MI-KGSWIKPGAAVIDVGTNAVDDSTKK  249 (299)
Q Consensus       202 ~~---l---------------------~~~~~~ADIVIsa~g~p~-------~i-~~~~vk~gavVIDvg~~~~~~~~~~  249 (299)
                      ..   +                     .+.+.++|+||+++|...       .+ +.++++++++|+|++|+|..+    
T Consensus       161 ~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~p~~t----  236 (287)
T 1nvt_A          161 EKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLET----  236 (287)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSC----
T ss_pred             HHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeeeCCccC----
Confidence            21   1                     234567999999998543       25 778999999999999987644    


Q ss_pred             CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                         +      |...++.+++.  +.+|++     ||++|.+++++.|++
T Consensus       237 ---~------ll~~a~~~G~~--~~~Gl~-----mL~~Qa~~af~~w~g  269 (287)
T 1nvt_A          237 ---V------LLKEAKKVNAK--TINGLG-----MLIYQGAVAFKIWTG  269 (287)
T ss_dssp             ---H------HHHHHHTTTCE--EECTHH-----HHHHHHHHHHHHHHS
T ss_pred             ---H------HHHHHHHCCCE--EeCcHH-----HHHHHHHHHHHHHhC
Confidence               2      44566667763  455665     999999999999986

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=99.95  E-value=5.3e-29  Score=229.14  Aligned_cols=209  Identities=17%  Similarity=0.179  Sum_probs=174.7

Q ss_pred             HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cccCCCCCcc---c
Q 022295           58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGFHPL---N  133 (299)
Q Consensus        58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KDVDg~~~~---n  133 (299)
                      .+++++|+++|+++.|..|+  +++++|.+.++.++ +++++|++||+|+|+++  ..+++.++| .|++++++.+   +
T Consensus        18 ~~hn~~~~~~gl~~~y~~~~--~~~~~l~~~i~~~~-~~~~~G~nVT~P~K~~v--~~~ld~~~~~A~~igavNti~~~~   92 (272)
T 1p77_A           18 LIQNKLAAQTHQTMEYIAKL--GDLDAFEQQLLAFF-EEGAKGCNITSPFKERA--YQLADEYSQRAKLAEACNTLKKLD   92 (272)
T ss_dssp             HHHHHHHHHTTCCEEEEEEE--CCTTTHHHHHHHHH-HTTCCEEEECTTCHHHH--HHHCSEECHHHHHHTCCSEEEECT
T ss_pred             HHHHHHHHHCCcCeEEEEEE--cCHHHHHHHHHHHH-hCCCCEEEECcCCHHHH--HHHHhhcCHHHHHhCCceEEEEcc
Confidence            47899999999999999995  77889999999999 57899999999999888  789999999 5999999876   6


Q ss_pred             ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---hh-----
Q 022295          134 IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---PE-----  205 (299)
Q Consensus       134 ~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---l~-----  205 (299)
                      .|+++ |++++      +.|+++.|++++++++||+++|+|+|++ |++++..|++.|++|++++|+...   +.     
T Consensus        93 ~g~l~-g~NTD------~~G~~~~L~~~~~~~~~~~vlvlGaGg~-g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~  164 (272)
T 1p77_A           93 DGKLY-ADNTD------GIGLVTDLQRLNWLRPNQHVLILGAGGA-TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQP  164 (272)
T ss_dssp             TSCEE-EECCH------HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGG
T ss_pred             CCEEE-EecCC------HHHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccc
Confidence            78876 65555      8999999999999999999999999885 999999999999999999987421   11     


Q ss_pred             ---------hhc-c-CCcEEEEecCCCCc-----CCCCccCCCeEEEEeeccCCC-CCccCCCceeeccCCchhhhhhhc
Q 022295          206 ---------SIV-R-EADIVIAAAGQAMM-----IKGSWIKPGAAVIDVGTNAVD-DSTKKSGYRLVGDVDFHEACKVAG  268 (299)
Q Consensus       206 ---------~~~-~-~ADIVIsa~g~p~~-----i~~~~vk~gavVIDvg~~~~~-~~~~~~g~kl~GDvdf~~~~~~a~  268 (299)
                               +.+ + ++|+||++||.+..     ++.++++++.+|+|+.|++.+ +             .|...++..+
T Consensus       165 ~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~~t-------------~ll~~a~~~G  231 (272)
T 1p77_A          165 YGNIQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDT-------------PFIALCKSLG  231 (272)
T ss_dssp             GSCEEEEEGGGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCC-------------HHHHHHHHTT
T ss_pred             cCCeEEeeHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeCCCCcCC-------------HHHHHHHHcC
Confidence                     122 3 89999999996543     566778899999999998864 3             2566777788


Q ss_pred             eeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          269 CVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       269 ~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +.|+++|      ..||++|.+.+++.|++
T Consensus       232 ~~~~v~G------~~mLv~Qa~~af~~w~g  255 (272)
T 1p77_A          232 LTNVSDG------FGMLVAQAAHSFHLWRG  255 (272)
T ss_dssp             CCCEECS------HHHHHHHHHHHHHHHHS
T ss_pred             CCEeeCC------HHHHHHHHHHHHHHHhC
Confidence            7656775      55999999999999986

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=99.95  E-value=1.5e-27  Score=222.57  Aligned_cols=218  Identities=20%  Similarity=0.302  Sum_probs=182.2

Q ss_pred             ECCCcccHHHHHHH-HHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cc
Q 022295           47 VGGRKDSQSYVSMK-RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EK  124 (299)
Q Consensus        47 vg~d~~s~~Y~~~k-~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~K  124 (299)
                      +| +|.+++|...+ +++|+++|+++.|..|+  +++++|.+.++.|+. ++++|++||+|+|+++  ..+++.++| .|
T Consensus        29 iG-~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~--~~~~~l~~~v~~l~~-~~~~G~nVTiP~K~~i--~~~ld~~~~~A~  102 (297)
T 2egg_A           29 IG-FPVEHSLSPLMHNDAFARLGIPARYHLFS--VEPGQVGAAIAGVRA-LGIAGVNVTIPHKLAV--IPFLDEVDEHAR  102 (297)
T ss_dssp             EE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEE--CCTTCHHHHHHHHHH-HTCCEEEECTTCTTTT--GGGCSEECHHHH
T ss_pred             EC-CCcccccCHHHHHHHHHHcCcCcEEEEEE--cCHHHHHHHHHHHhh-CCCCeEEECCcCHHHH--HHHHHHHhHHHH
Confidence            46 78888887654 59999999999999995  777889999999984 5899999999999999  789999999 59


Q ss_pred             cCCCCCcc--cccccccCCCCCccccCCHHHHHHHHHhhC-CCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295          125 DVDGFHPL--NIGKLAMKGRDPLFLPCTPKGCLELLKRSG-VTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH  200 (299)
Q Consensus       125 DVDg~~~~--n~g~l~~g~~~~~~~PcT~~av~~ll~~~~-~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~  200 (299)
                      ++++++.+  +.|++. |++++      ..|+++.|++++ ++++||+++|+|+|++ |++++..|...|+ +|++++++
T Consensus       103 ~iGavNti~~~~g~l~-g~nTd------~~G~~~~l~~~~~~~l~~~~vlVlGaGg~-g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          103 RIGAVNTIINNDGRLV-GYNTD------GLGYVQALEEEMNITLDGKRILVIGAGGG-ARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             HHTCCCEEEEETTEEE-EECCH------HHHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHTTTCSEEEEECSS
T ss_pred             HhCCCCeEECcCCeEe-eccCC------HHHHHHHHHHhCCCCCCCCEEEEECcHHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            99999876  578876 65555      589999999998 8999999999999986 9999999999998 99999986


Q ss_pred             CC--------------------ChhhhccCCcEEEEecCCCC-------cCCCCccCCCeEEEEeeccCCCCCccCCCce
Q 022295          201 TT--------------------DPESIVREADIVIAAAGQAM-------MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYR  253 (299)
Q Consensus       201 t~--------------------~l~~~~~~ADIVIsa~g~p~-------~i~~~~vk~gavVIDvg~~~~~~~~~~~g~k  253 (299)
                      ..                    ++.+.+.++|+||++++.+.       .++.++++++++|+|+.|+|.++       +
T Consensus       175 ~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T-------~  247 (297)
T 2egg_A          175 VEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLET-------K  247 (297)
T ss_dssp             HHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSC-------H
T ss_pred             HHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCC-------H
Confidence            21                    23456788999999998543       25678899999999999988654       2


Q ss_pred             eeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          254 LVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       254 l~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                            |.+.++.+++ ++++|      ..||++|.+++++.|++
T Consensus       248 ------ll~~A~~~G~-~~v~G------l~MLv~Qa~~af~~w~g  279 (297)
T 2egg_A          248 ------WLKEAKARGA-RVQNG------VGMLVYQGALAFEKWTG  279 (297)
T ss_dssp             ------HHHHHHHTTC-EEECS------HHHHHHHHHHHHHHHHS
T ss_pred             ------HHHHHHHCcC-EEECC------HHHHHHHHHHHHHHHhC
Confidence                  5566677776 45776      55999999999999986

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.94  E-value=2.7e-27  Score=215.89  Aligned_cols=216  Identities=21%  Similarity=0.259  Sum_probs=182.3

Q ss_pred             EECCCcccHHHH-HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-c
Q 022295           46 IVGGRKDSQSYV-SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-E  123 (299)
Q Consensus        46 ~vg~d~~s~~Y~-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~  123 (299)
                      .+| +|.+++|- .+++++|+++|+++.|..+  ++++++|.+.++.++.+  ++|++||.|+|+++  ..+++.++| .
T Consensus         6 ~~G-~pi~hs~sp~~h~~~~~~~g~~~~y~~~--~~~~~~l~~~i~~l~~~--~~G~~vt~P~k~~i--~~~~~~l~~~a   78 (263)
T 2d5c_A            6 VLG-HPVAHSLSPAMHAFALESLGLEGSYEAW--DTPLEALPGRLKEVRRA--FRGVNLTLPLKEAA--LAHLDWVSPEA   78 (263)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEE--ECCGGGHHHHHHHHHHH--CSEEEECTTCTTGG--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHhcccc--CceEEEcccCHHHH--HHHHHHHhHHH
Confidence            456 88899998 8999999999999999988  47889999999999986  99999999999988  678899999 9


Q ss_pred             ccCCCCCcc--cccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          124 KDVDGFHPL--NIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       124 KDVDg~~~~--n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      |+++|++.+  +.|++. |++++      ..|++..|++++++++| +++|||+|++ |++++..|.+.|++|++++++.
T Consensus        79 ~~~gavn~i~~~~g~~~-g~ntd------~~g~~~~l~~~~~~l~~-~v~iiG~G~~-g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A           79 QRIGAVNTVLQVEGRLF-GFNTD------APGFLEALKAGGIPLKG-PALVLGAGGA-GRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             HHHTCCCEEEEETTEEE-EECCH------HHHHHHHHHHTTCCCCS-CEEEECCSHH-HHHHHHHHHHTTCCEEEECSSH
T ss_pred             HHhCCCCcEEccCCeEE-EeCCC------HHHHHHHHHHhCCCCCC-eEEEECCcHH-HHHHHHHHHHCCCEEEEEECCH
Confidence            999999887  778775 54444      47999999999999999 9999999985 9999999999999999999863


Q ss_pred             C--------------ChhhhccCCcEEEEecCCC------CcCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCch
Q 022295          202 T--------------DPESIVREADIVIAAAGQA------MMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFH  261 (299)
Q Consensus       202 ~--------------~l~~~~~~ADIVIsa~g~p------~~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~  261 (299)
                      .              ++.+. +++|+||++++.+      ..++.+++++|++|+|+++++.++       +      +.
T Consensus       150 ~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~t-------~------l~  215 (263)
T 2d5c_A          150 QRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWT-------R------FL  215 (263)
T ss_dssp             HHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSSC-------H------HH
T ss_pred             HHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCccc-------H------HH
Confidence            2              34556 8899999999965      346678899999999999986533       2      34


Q ss_pred             hhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          262 EACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       262 ~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +..+..++ ++++|      ..||+.|.+.+++.|++
T Consensus       216 ~~a~~~g~-~~v~g------~~mlv~q~~~a~~~w~g  245 (263)
T 2d5c_A          216 REAKAKGL-KVQTG------LPMLAWQGALAFRLWTG  245 (263)
T ss_dssp             HHHHHTTC-EEECS------HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHCcC-EEECc------HHHHHHHHHHHHHHHhC
Confidence            45555665 56776      67999999999999986

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=99.94  E-value=2.1e-27  Score=220.48  Aligned_cols=216  Identities=19%  Similarity=0.235  Sum_probs=179.5

Q ss_pred             ECCCcccHHHH-HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cc
Q 022295           47 VGGRKDSQSYV-SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EK  124 (299)
Q Consensus        47 vg~d~~s~~Y~-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~K  124 (299)
                      +| +|-++++- .+++++|+++|+++.|..|+  +++++|.+.++.++. +++.|++|++|+|..+  ..+++.++| .+
T Consensus        11 iG-~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~v~~l~~-~~~~G~nVTiP~K~~v--~~~ld~ls~~A~   84 (282)
T 3fbt_A           11 IG-EKLGHSHSSYIHKLIFEKVGIKGIYNLFE--VPKEKLKESVDTFKI-IKCGGLNVTIPYKVEV--MKELYEISEKAR   84 (282)
T ss_dssp             EE-SSCCCCHHHHHHHHHHHHHTCCEEEEEEE--CCGGGHHHHHHHHHH-TTCCEEEECTTCTTGG--GGGCSEECHHHH
T ss_pred             EC-CCccccchHHHHHHHHHHcCCCcEEEEEE--CCHHHHHHHHHHHhc-CCCCEEEEcCCCHHHH--HHHHHhcCHHHH
Confidence            46 67777776 46679999999999999985  777899999999986 6899999999999766  789999999 69


Q ss_pred             cCCCCCccc--ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC
Q 022295          125 DVDGFHPLN--IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT  201 (299)
Q Consensus       125 DVDg~~~~n--~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t  201 (299)
                      .+++++.+.  -|++. |++++      ..|+++.|++++++++||+++|+|+|++ |++++..|...|+ +|++++|+.
T Consensus        85 ~iGAVNTv~~~~g~l~-G~NTD------~~G~~~~L~~~~~~~~~k~vlvlGaGGa-araia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A           85 KIGAVNTLKFSREGIS-GFNTD------YIGFGKMLSKFRVEIKNNICVVLGSGGA-ARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             HHTCCCEEEECSSCEE-EECCH------HHHHHHHHHHTTCCCTTSEEEEECSSTT-HHHHHHHHHHTTCSEEEEEESCH
T ss_pred             HcCCcceEEeeCCEEE-eeCCc------HHHHHHHHHHcCCCccCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCH
Confidence            999987654  36655 66565      6999999999999999999999999997 9999999999998 899999763


Q ss_pred             CC---------------hhhhccCCcEEEEecCC---CC----cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCC
Q 022295          202 TD---------------PESIVREADIVIAAAGQ---AM----MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVD  259 (299)
Q Consensus       202 ~~---------------l~~~~~~ADIVIsa~g~---p~----~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvd  259 (299)
                      ..               +.+ + ++|+||++|+.   |+    .++.++++++.+|+|+.|+|.+++             
T Consensus       157 ~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~-------------  221 (282)
T 3fbt_A          157 EKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVETL-------------  221 (282)
T ss_dssp             HHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSCH-------------
T ss_pred             HHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCCH-------------
Confidence            21               112 3 89999999863   43    367888999999999999998763             


Q ss_pred             chhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          260 FHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       260 f~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      |...++..|+-  +-+|.+     ||++|.+++++.|++
T Consensus       222 ll~~A~~~G~~--~~~Gl~-----MLv~Qa~~~f~lwtg  253 (282)
T 3fbt_A          222 FLKYARESGVK--AVNGLY-----MLVSQAAASEEIWND  253 (282)
T ss_dssp             HHHHHHHTTCE--EECSHH-----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCcCe--EeCcHH-----HHHHHHHHHHHHHcC
Confidence            66777788873  445666     999999999999986

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.94  E-value=3.8e-27  Score=216.88  Aligned_cols=218  Identities=19%  Similarity=0.272  Sum_probs=182.7

Q ss_pred             EEECCCcccHHHHH-HHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-
Q 022295           45 VIVGGRKDSQSYVS-MKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-  122 (299)
Q Consensus        45 i~vg~d~~s~~Y~~-~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-  122 (299)
                      -++| +|.|++|.. +++++|+++|+++.|..|+  +++++|.+.++.++. ++++|++||.|+|+++  ..+++.++| 
T Consensus        16 ~liG-~pi~hs~sp~~h~~~~~~~g~~~~y~~~~--~~~~~l~~~i~~l~~-~~~~G~nvtiP~k~~i--~~~ld~l~~~   89 (275)
T 2hk9_A           16 GVIG-FPVKHSLSPVFQNALIRYAGLNAVYLAFE--INPEELKKAFEGFKA-LKVKGINVTVPFKEEI--IPLLDYVEDT   89 (275)
T ss_dssp             EEEE-SSCTTCSHHHHHHHHHHHHTCSEEEEEEE--CCGGGHHHHHHHHHH-HTCCEEEECTTSTTTT--GGGCSEECHH
T ss_pred             EEEC-CCcccccCHHHHHHHHHHcCCCcEEEEEE--CCHHHHHHHHHHHHh-CCCCEEEECccCHHHH--HHHHHHhhHH
Confidence            3578 999999996 7779999999999999995  788999999999995 6899999999999988  778899999 


Q ss_pred             cccCCCCCcc--cccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          123 EKDVDGFHPL--NIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       123 ~KDVDg~~~~--n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++++++.+  +.|++. |+      ++++.|++..|++++++++|++++|||+|++ |++++..|.+.|++|++++++
T Consensus        90 A~~~gavnti~~~~g~~~-g~------nTd~~G~~~~l~~~~~~~~~~~v~iiGaG~~-g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A           90 AKEIGAVNTVKFENGKAY-GY------NTDWIGFLKSLKSLIPEVKEKSILVLGAGGA-SRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             HHHHTCCCEEEEETTEEE-EE------CCHHHHHHHHHHHHCTTGGGSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSS
T ss_pred             HHHhCCcceEEeeCCEEE-ee------cCCHHHHHHHHHHhCCCcCCCEEEEECchHH-HHHHHHHHHHcCCEEEEEECC
Confidence            5999999776  466664 43      3568999999999999999999999999886 999999999999999999976


Q ss_pred             C---------------CChhhhccCCcEEEEecCCCC------cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCC
Q 022295          201 T---------------TDPESIVREADIVIAAAGQAM------MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVD  259 (299)
Q Consensus       201 t---------------~~l~~~~~~ADIVIsa~g~p~------~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvd  259 (299)
                      .               .++.+.++++|+||++++...      .++.+++++|++|+|+++  ..+       +      
T Consensus       162 ~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~~~~l~~g~~viDv~~--~~t-------~------  226 (275)
T 2hk9_A          162 KEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY--KET-------K------  226 (275)
T ss_dssp             HHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSCGGGCCTTSEEEESSS--SCC-------H------
T ss_pred             HHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC--ChH-------H------
Confidence            2               156677889999999998542      456678999999999998  322       2      


Q ss_pred             chhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          260 FHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       260 f~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +.+..+..++ +.+||      ..||+.|.+.++++|++
T Consensus       227 ll~~a~~~g~-~~v~g------~~mlv~q~~~a~~~w~g  258 (275)
T 2hk9_A          227 LLKKAKEKGA-KLLDG------LPMLLWQGIEAFKIWNG  258 (275)
T ss_dssp             HHHHHHHTTC-EEECS------HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCcC-EEECC------HHHHHHHHHHHHHHHHC
Confidence            3444555564 56776      67999999999999986

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=99.93  E-value=4.4e-26  Score=214.69  Aligned_cols=219  Identities=20%  Similarity=0.317  Sum_probs=179.7

Q ss_pred             EECCCcccHHHH-HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-c
Q 022295           46 IVGGRKDSQSYV-SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-E  123 (299)
Q Consensus        46 ~vg~d~~s~~Y~-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~  123 (299)
                      ++| +|-++++- .+++.+|+++|+++.|..|+  +++++|.+.++.++. +++.|++|++|+|..+  ..+++.++| .
T Consensus        42 viG-~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~--v~~~~l~~~~~~l~~-~~~~G~nVTiP~K~~v--~~~lD~ls~~A  115 (315)
T 3tnl_A           42 LIA-TPIRHSLSPTMHNEAFAKLGLDYVYLAFE--VGDKELKDVVQGFRA-MNLRGWNVSMPNKTNI--HKYLDKLSPAA  115 (315)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHHTCCEEEEEEE--CCHHHHHHHHHHHHH-TTCCEEEECTTSTTTG--GGGCSEECHHH
T ss_pred             EEC-CCccccccHHHHHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHhc-CCCCEEEEcCCChHHH--HHHHHhcCHHH
Confidence            457 56555554 36677999999999999985  788899999999986 6899999999999777  789999999 6


Q ss_pred             ccCCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295          124 KDVDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH  200 (299)
Q Consensus       124 KDVDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~  200 (299)
                      +.+.+++.+ + -|++. |++++      ..|+++.|++++++++||+++|+|+|++ |++++..|..+|+ +|++++|+
T Consensus       116 ~~iGAVNTi~~~~g~l~-G~NTD------~~Gf~~~L~~~~~~l~gk~~lVlGaGG~-g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          116 ELVGAVNTVVNDDGVLT-GHITD------GTGYMRALKEAGHDIIGKKMTICGAGGA-ATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             HHHTCCSEEEEETTEEE-EECCH------HHHHHHHHHHTTCCCTTSEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECS
T ss_pred             HHhCccceEEecCCEEE-EeCCC------HHHHHHHHHHcCCCccCCEEEEECCChH-HHHHHHHHHHCCCCEEEEEECC
Confidence            999998654 3 35655 66555      7999999999999999999999999986 9999999999998 89999987


Q ss_pred             CC-----------------------------ChhhhccCCcEEEEecCC---CC----cC-CCCccCCCeEEEEeeccCC
Q 022295          201 TT-----------------------------DPESIVREADIVIAAAGQ---AM----MI-KGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       201 t~-----------------------------~l~~~~~~ADIVIsa~g~---p~----~i-~~~~vk~gavVIDvg~~~~  243 (299)
                      .+                             ++.+.+.++|+||++|+.   |+    .+ +.++++++.+|+|+.|+|.
T Consensus       188 ~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~  267 (315)
T 3tnl_A          188 DDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPT  267 (315)
T ss_dssp             STTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSS
T ss_pred             CchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCC
Confidence            21                             123446689999999872   33    35 6788999999999999997


Q ss_pred             CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +++             |...++..|+  ++-+|.+     ||++|.+.+++.|+|
T Consensus       268 ~T~-------------ll~~A~~~G~--~~~~Gl~-----MLv~Qa~~af~lwtG  302 (315)
T 3tnl_A          268 KTR-------------LLEIAEEQGC--QTLNGLG-----MMLWQGAKAFEIWTH  302 (315)
T ss_dssp             SCH-------------HHHHHHHTTC--EEECSHH-----HHHHHHHHHHHHHHS
T ss_pred             CCH-------------HHHHHHHCCC--eEeCcHH-----HHHHHHHHHHHHHhC
Confidence            763             6677777887  4456677     999999999999986

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=99.91  E-value=1.2e-24  Score=201.41  Aligned_cols=208  Identities=18%  Similarity=0.194  Sum_probs=169.4

Q ss_pred             HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cccCCCCCc-cc-c
Q 022295           58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGFHP-LN-I  134 (299)
Q Consensus        58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KDVDg~~~-~n-~  134 (299)
                      .+++.+++++|+++.|..|+  ++.++|.+.++.+.. .++.|++|++|++..+  ..+++.++| .+-+.+++. ++ -
T Consensus        17 ~~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~~d~l~~~A~~iGAVNTv~~~~   91 (277)
T 3don_A           17 LMHHANFQSLNLENTYEAIN--VPVNQFQDIKKIISE-KSIDGFNVTIPHKERI--IPYLDDINEQAKSVGAVNTVLVKD   91 (277)
T ss_dssp             HHHHHHHHHTTCCCEEEEEE--CCGGGGGGHHHHHHH-TTCSEEEECTTCTTTT--GGGCSEECHHHHHHTCCCEEEEET
T ss_pred             HHHHHHHHHcCcCcEEEEEE--cCHHHHHHHHHHHhh-CCCCEEEECcCCHHHH--HHHhhhCCHHHHHhCceeEEEecC
Confidence            47899999999999999886  666778788887765 4799999999999888  778899998 778877743 33 3


Q ss_pred             cccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCC-----------
Q 022295          135 GKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTT-----------  202 (299)
Q Consensus       135 g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~-----------  202 (299)
                      |++. |++++      ..|+++.|++.+++++||+++|+|+|++ |++++..|.+.|+ +|++++|+..           
T Consensus        92 g~l~-G~NTD------~~G~~~~L~~~~~~l~~k~vlvlGaGg~-g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~  163 (277)
T 3don_A           92 GKWI-GYNTD------GIGYVNGLKQIYEGIEDAYILILGAGGA-SKGIANELYKIVRPTLTVANRTMSRFNNWSLNINK  163 (277)
T ss_dssp             TEEE-EECCH------HHHHHHHHHHHSTTGGGCCEEEECCSHH-HHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEE
T ss_pred             CEEE-EECCh------HHHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhccc
Confidence            5554 66555      7999999999999999999999999986 9999999999998 8999998632           


Q ss_pred             ----ChhhhccCCcEEEEecCC---CC---cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceecc
Q 022295          203 ----DPESIVREADIVIAAAGQ---AM---MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTP  272 (299)
Q Consensus       203 ----~l~~~~~~ADIVIsa~g~---p~---~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTP  272 (299)
                          ++.+.+.++|+||++|+.   |+   .++.++++++.+|+|+.|+|.++       +      |.+.++..|+  +
T Consensus       164 ~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~T-------~------ll~~A~~~G~--~  228 (277)
T 3don_A          164 INLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKT-------P------ILIEAEQRGN--P  228 (277)
T ss_dssp             ECHHHHHHTGGGCSEEEECCC-------CCSSCCTTCCSSCEEEESCCSSSSC-------H------HHHHHHHTTC--C
T ss_pred             ccHhhHHHHhcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecCCCCCC-------H------HHHHHHHCcC--E
Confidence                233557899999999874   33   36788999999999999998655       2      6666777786  3


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          273 VPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       273 VPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +-+|.+     ||++|...+++.|++
T Consensus       229 ~~~Gl~-----MLv~Qa~~~f~lwtg  249 (277)
T 3don_A          229 IYNGLD-----MFVHQGAESFKIWTN  249 (277)
T ss_dssp             EECTHH-----HHHHHHHHHHHHHHS
T ss_pred             EeCCHH-----HHHHHHHHHHHHHcC
Confidence            455676     999999999999986

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=99.91  E-value=2.1e-24  Score=200.23  Aligned_cols=221  Identities=13%  Similarity=0.168  Sum_probs=171.7

Q ss_pred             EECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cc
Q 022295           46 IVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EK  124 (299)
Q Consensus        46 ~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~K  124 (299)
                      .+|+.-+-..-=.+++.+++++|+++.|..|+  ++.++|.+.++.+.. +++.|++|+.|++..+  ..+++.++| .+
T Consensus        13 viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~ld~l~~~A~   87 (281)
T 3o8q_A           13 VFGNPINHSKSPFIHTLFARQTQQSMIYTAQC--VPVDGFTEAAKHFFA-QGGRGCNVTVPFKEEA--YRFADRLTERAR   87 (281)
T ss_dssp             EECCSSSCCCHHHHHHHHHHHTTCCEEEEEEC--CCTTCHHHHHHHHHH-TTCCEEEECTTSHHHH--HHHCSEECHHHH
T ss_pred             EECCCCCccCcHHHHHHHHHHcCCCcEEEEee--cCHHHHHHHHHHHHh-CCCCEEEECCccHHHH--HHHHhhcCHHHH
Confidence            35743322223347899999999999999886  666778888888874 5799999999999665  667788888 77


Q ss_pred             cCCCCCcc--c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295          125 DVDGFHPL--N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH  200 (299)
Q Consensus       125 DVDg~~~~--n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~  200 (299)
                      -+.+++.+  + -|++. |++++      ..|+++.|++.+++++||+++|+|+|++ |++++..|...|+ +|++++|+
T Consensus        88 ~iGAVNTv~~~~~g~l~-G~NTD------~~G~~~~L~~~~~~l~~k~vlvlGaGg~-g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A           88 LAGAVNTLKKLDDGEIL-GDNTD------GEGLVQDLLAQQVLLKGATILLIGAGGA-ARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             HHTCCSEEEECTTSCEE-EECCH------HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHTTCCSEEEEEESS
T ss_pred             hhCeeeEEEEcCCCcEE-EEecH------HHHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHhcCCCeEEEEECC
Confidence            77777533  2 35555 66555      7999999999999999999999999986 9999999999996 99999986


Q ss_pred             CCCh------------------hhhccCCcEEEEecCCC-----CcCCCCccCCCeEEEEeeccCCCCCccCCCceeecc
Q 022295          201 TTDP------------------ESIVREADIVIAAAGQA-----MMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGD  257 (299)
Q Consensus       201 t~~l------------------~~~~~~ADIVIsa~g~p-----~~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GD  257 (299)
                      ....                  .+...++|+||++|+..     ..++.++++++.+|+|+.|+|.++       +    
T Consensus       160 ~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P~~T-------~----  228 (281)
T 3o8q_A          160 FAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYT-------V----  228 (281)
T ss_dssp             HHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCCSSCC-------H----
T ss_pred             HHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCCccC-------H----
Confidence            3221                  12226799999999853     246788999999999999998665       2    


Q ss_pred             CCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          258 VDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       258 vdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                        |...++..|+- .+-+|.+     ||++|...+++.|++
T Consensus       229 --ll~~A~~~G~~-~~~~Gl~-----Mlv~Qa~~~f~lwtg  261 (281)
T 3o8q_A          229 --FNQWARQHGCA-QAIDGLG-----MLVGQAAESFMLWRG  261 (281)
T ss_dssp             --HHHHHHHTTCS-EEECTHH-----HHHHHHHHHHHHHHS
T ss_pred             --HHHHHHHCCCC-EEECcHH-----HHHHHHHHHHHHHhC
Confidence              55666777763 1445666     999999999999986

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=99.91  E-value=4.5e-24  Score=198.06  Aligned_cols=222  Identities=17%  Similarity=0.199  Sum_probs=175.8

Q ss_pred             EECCCcccHHHHHHHHHHHHHcCCceeeecCCC---CCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc
Q 022295           46 IVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE---QVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL  122 (299)
Q Consensus        46 ~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~---~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p  122 (299)
                      .+|+.-+-..-=.+++.+++++|+++.|..|+-   .++.++|.+.++.+.. +++.|++|++|++..+  ..+++.++|
T Consensus         9 viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~lD~l~~   85 (283)
T 3jyo_A            9 LIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALY-LGFNGLNITHPYKQAV--LPLLDEVSE   85 (283)
T ss_dssp             EEESSCTTCSHHHHHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHH-TTCCEEEECTTCTTTT--GGGSSEECH
T ss_pred             EECCCccccccHHHHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhh-CCCCEEEECcccHHHH--HHHhhhCCH
Confidence            346332222233478999999999999998842   2456778888887765 5799999999999888  778899999


Q ss_pred             -cccCCCCCc-ccc--cccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEE
Q 022295          123 -EKDVDGFHP-LNI--GKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIV  197 (299)
Q Consensus       123 -~KDVDg~~~-~n~--g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~  197 (299)
                       .+-+.+++. ++.  |++. |++++      ..|+++.|++.+.+++||+++|+|+|++ |++++..|...|+ +|+++
T Consensus        86 ~A~~iGAVNTv~~~~~g~l~-G~NTD------~~G~~~~l~~~~~~l~~k~vlVlGaGG~-g~aia~~L~~~G~~~v~i~  157 (283)
T 3jyo_A           86 QATQLGAVNTVVIDATGHTT-GHNTD------VSGFGRGMEEGLPNAKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVA  157 (283)
T ss_dssp             HHHHHTCCCEEEECTTSCEE-EECHH------HHHHHHHHHHHCTTCCCSEEEEECCSHH-HHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHhCcceEEEECCCCeEE-EecCC------HHHHHHHHHHhCcCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEE
Confidence             788877753 332  4554 65555      7999999999999999999999999986 9999999999998 79999


Q ss_pred             cCCCC------------------------ChhhhccCCcEEEEecCC---CC---cCCCCccCCCeEEEEeeccCCCCCc
Q 022295          198 HSHTT------------------------DPESIVREADIVIAAAGQ---AM---MIKGSWIKPGAAVIDVGTNAVDDST  247 (299)
Q Consensus       198 ~~~t~------------------------~l~~~~~~ADIVIsa~g~---p~---~i~~~~vk~gavVIDvg~~~~~~~~  247 (299)
                      +|+..                        ++.+.++++|+||++|+.   |+   .++.++++++.+|+|+.|+|.+++ 
T Consensus       158 ~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~-  236 (283)
T 3jyo_A          158 DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETE-  236 (283)
T ss_dssp             CSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCCSSSSCH-
T ss_pred             ECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecCCCCCCH-
Confidence            87621                        445667789999999973   32   367889999999999999997663 


Q ss_pred             cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                                  |...++..|+  ++-+|.+     ||++|.+++++.|++
T Consensus       237 ------------ll~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg  268 (283)
T 3jyo_A          237 ------------LLKAARALGC--ETLDGTR-----MAIHQAVDAFRLFTG  268 (283)
T ss_dssp             ------------HHHHHHHHTC--CEECTHH-----HHHHHHHHHHHHHHS
T ss_pred             ------------HHHHHHHCcC--eEeCcHH-----HHHHHHHHHHHHHcC
Confidence                        6677777887  4556677     999999999999986

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=99.90  E-value=2.7e-24  Score=198.56  Aligned_cols=209  Identities=13%  Similarity=0.126  Sum_probs=166.6

Q ss_pred             HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cccCCCCCc-cc-c
Q 022295           58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGFHP-LN-I  134 (299)
Q Consensus        58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KDVDg~~~-~n-~  134 (299)
                      .+++.+++++|+++.|..|+  +..++|.+.++.+.. +++.|++|+.|++..+  ..+++.++| .+-+.+++. .+ -
T Consensus        19 ~~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~~d~l~~~A~~iGAvNTv~~~~   93 (272)
T 3pwz_A           19 LIHGLFAQASNQQLEYGAIE--GSLDDFEAQVLQFRS-EGGKGMNITAPFKLRA--FELADRRSERAQLARAANALKFED   93 (272)
T ss_dssp             HHHHHHHHHTTCCEEEEEEE--CCTTTHHHHHHHHHH-TTCCEEEECTTCHHHH--HHHCSEECHHHHHHTCCSEEEEET
T ss_pred             HHHHHHHHHcCCCcEEEEEE--cCHHHHHHHHHHHhh-CCCCEEEECchhHHHH--HHHHhhCCHHHHHhCccceEEccC
Confidence            47899999999999999885  566778888888875 5799999999999665  667788888 777777643 33 3


Q ss_pred             cccccCCCCCccccCCHHHHHHH-HHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCCCh--------
Q 022295          135 GKLAMKGRDPLFLPCTPKGCLEL-LKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTTDP--------  204 (299)
Q Consensus       135 g~l~~g~~~~~~~PcT~~av~~l-l~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~~l--------  204 (299)
                      |++. |++++      ..|+++. |++.+++++||+++|+|+|++ |++++..|.+.|+ +|++++|+....        
T Consensus        94 g~l~-G~NTD------~~G~~~~lL~~~~~~l~~k~~lvlGaGg~-~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~  165 (272)
T 3pwz_A           94 GRIV-AENFD------GIGLLRDIEENLGEPLRNRRVLLLGAGGA-VRGALLPFLQAGPSELVIANRDMAKALALRNELD  165 (272)
T ss_dssp             TEEE-EECCH------HHHHHHHHHTTSCCCCTTSEEEEECCSHH-HHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHC
T ss_pred             CeEE-EecCC------HHHHHHHHHHHcCCCccCCEEEEECccHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence            4554 66555      7899996 999999999999999999986 9999999999996 999998863211        


Q ss_pred             ---------hhhc-cCCcEEEEecCCC---C--cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhce
Q 022295          205 ---------ESIV-READIVIAAAGQA---M--MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGC  269 (299)
Q Consensus       205 ---------~~~~-~~ADIVIsa~g~p---~--~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~  269 (299)
                               .+.- .++|+||++|+..   +  .++.++++++.+|+|+.|+|.+++             |...++..|+
T Consensus       166 ~~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P~~T~-------------ll~~A~~~G~  232 (272)
T 3pwz_A          166 HSRLRISRYEALEGQSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGKGLTP-------------FLRLAREQGQ  232 (272)
T ss_dssp             CTTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSCCSCH-------------HHHHHHHHSC
T ss_pred             cCCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCCCCCH-------------HHHHHHHCCC
Confidence                     1111 6899999999742   1  468899999999999999987662             6677777786


Q ss_pred             eccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          270 VTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       270 iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      - .+-+|.+     ||++|...+++.|+|
T Consensus       233 ~-~~~~Gl~-----ML~~Qa~~~f~lwtg  255 (272)
T 3pwz_A          233 A-RLADGVG-----MLVEQAAEAFAWWRG  255 (272)
T ss_dssp             C-EEECTHH-----HHHHHHHHHHHHHHS
T ss_pred             C-EEECCHH-----HHHHHHHHHHHHHhC
Confidence            3 1445666     999999999999986

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=99.89  E-value=1e-23  Score=198.33  Aligned_cols=219  Identities=18%  Similarity=0.248  Sum_probs=171.1

Q ss_pred             ECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-ccc
Q 022295           47 VGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKD  125 (299)
Q Consensus        47 vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KD  125 (299)
                      +|+.-+-..-=.+++.+++++|+++.|..|+  +++++|.+.++.+.. .++.|++|++|++..+  ..+++.++| .+-
T Consensus        37 iG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~lD~ls~~A~~  111 (312)
T 3t4e_A           37 MAYPIRHSLSPEMQNKALEKAGLPYTYMAFE--VDNTTFASAIEGLKA-LKMRGTGVSMPNKQLA--CEYVDELTPAAKL  111 (312)
T ss_dssp             EESCCTTCSHHHHHHHHHHHHTCSEEEEEEE--CCTTTHHHHHHHHHH-TTCCEEEECTTSHHHH--GGGCSEECHHHHH
T ss_pred             ECCCccccccHHHHHHHHHHcCCCcEEEeEe--cCHHHHHHHHHHHhh-CCCCEEEECchhHHHH--HHHhhhcCHHHHH
Confidence            4643332233357899999999999999886  666778888888875 4799999999999555  556677777 677


Q ss_pred             CCCCCc-cc-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCC
Q 022295          126 VDGFHP-LN-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTT  202 (299)
Q Consensus       126 VDg~~~-~n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~  202 (299)
                      +.+++. ++ -|++. |++++      ..|+++.|++.+++++||+++|+|+|++ |++++..|...|+ .|++++|+..
T Consensus       112 iGAVNTi~~~~g~l~-G~NTD------~~Gf~~~L~~~~~~l~gk~~lVlGAGGa-araia~~L~~~G~~~v~v~nRt~~  183 (312)
T 3t4e_A          112 VGAINTIVNDDGYLR-GYNTD------GTGHIRAIKESGFDMRGKTMVLLGAGGA-ATAIGAQAAIEGIKEIKLFNRKDD  183 (312)
T ss_dssp             HTCCSEEEEETTEEE-EECHH------HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSST
T ss_pred             hCceeEEEecCCEEE-EeCCc------HHHHHHHHHhcCCCcCCCEEEEECcCHH-HHHHHHHHHHcCCCEEEEEECCCc
Confidence            777643 33 35554 66555      7999999999999999999999999997 9999999999998 8999998721


Q ss_pred             --------------------------Ch---hhhccCCcEEEEecCC---CC---cC--CCCccCCCeEEEEeeccCCCC
Q 022295          203 --------------------------DP---ESIVREADIVIAAAGQ---AM---MI--KGSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       203 --------------------------~l---~~~~~~ADIVIsa~g~---p~---~i--~~~~vk~gavVIDvg~~~~~~  245 (299)
                                                ++   .+.+.++|+||++|+.   |.   .+  +.++++++.+|+|+.|+|.++
T Consensus       184 ~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T  263 (312)
T 3t4e_A          184 FFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMT  263 (312)
T ss_dssp             HHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSSC
T ss_pred             hHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCCC
Confidence                                      11   3346789999998873   22   12  568899999999999999876


Q ss_pred             CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +             |...++..|+  ++-+|.+     ||++|.+++++.|++
T Consensus       264 ~-------------ll~~A~~~G~--~~~~Gl~-----MLv~Qa~~af~lwtg  296 (312)
T 3t4e_A          264 K-------------LLQQAQQAGC--KTIDGYG-----MLLWQGAEQFELWTG  296 (312)
T ss_dssp             H-------------HHHHHHHTTC--EEECHHH-----HHHHHHHHHHHHHHS
T ss_pred             H-------------HHHHHHHCCC--eEECcHH-----HHHHHHHHHHHHHhC
Confidence            3             6677778887  4556777     999999999999986

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=99.86  E-value=8e-22  Score=181.86  Aligned_cols=216  Identities=13%  Similarity=0.228  Sum_probs=167.1

Q ss_pred             EEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-c
Q 022295           45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-E  123 (299)
Q Consensus        45 i~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~  123 (299)
                      -.+|+. .|.+=. +++.+++++|+++.|..|+    .++|.+.++.+.. .++.|++|+.|++..+  ..+++.++| .
T Consensus        11 ~viG~P-hS~SP~-~hn~~~~~~gl~~~Y~~~~----~~~l~~~~~~~~~-~~~~G~nVTiP~K~~i--~~~~d~~~~~A   81 (271)
T 1npy_A           11 SLSGRP-SNFGTT-FHNYLYDKLGLNFIYKAFT----TQDIEHAIKGVRA-LGIRGCAVSMPFKETC--MPFLDEIHPSA   81 (271)
T ss_dssp             EECSSC-CSHHHH-HHHHHHHHHTCCEEEEEEC----CSCHHHHHHHHHH-HTCCEEEECTTCTTTT--GGGCSEECHHH
T ss_pred             EEECCC-CcccHH-HHHHHHHHcCCCcEEEeec----hhhHHHHHHHhcc-CCCCeEEECcCCHHHH--HHHHHHhhHHH
Confidence            457865 676665 8899999999999999987    2345555555544 2589999999999888  778888998 8


Q ss_pred             ccCCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295          124 KDVDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH  200 (299)
Q Consensus       124 KDVDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~  200 (299)
                      +.+.+++.+ | .|++. |++++      ..|+.+.|++.+.+ .+++++|+|+|++ |++++..|...|+ +|+|++|+
T Consensus        82 ~~iGAvNTi~~~~g~l~-g~NTD------~~G~~~~l~~~~~~-~~~~vlvlGaGga-arav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A           82 QAIESVNTIVNDNGFLR-AYNTD------YIAIVKLIEKYHLN-KNAKVIVHGSGGM-AKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             HTTTCCCEEEEETTEEE-EECHH------HHHHHHHHHHTTCC-TTSCEEEECSSTT-HHHHHHHHHHTTCCCEEEECSC
T ss_pred             HHhCCCCceECcCCEEE-eecCC------HHHHHHHHHHhCCC-CCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            888887543 4 45554 65554      68999999988875 7899999999997 9999999999997 79999986


Q ss_pred             CCC---hh---------h-hccCCcEEEEecCCCC--------c-CCCCccCCCeEEEEeeccCCCCCccCCCceeeccC
Q 022295          201 TTD---PE---------S-IVREADIVIAAAGQAM--------M-IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDV  258 (299)
Q Consensus       201 t~~---l~---------~-~~~~ADIVIsa~g~p~--------~-i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDv  258 (299)
                      ...   +.         + .+.++|+||++|+...        . ++.++++++.+|+|+.|+|.+++            
T Consensus       153 ~~ka~~la~~~~~~~~~~~~~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~~T~------------  220 (271)
T 1npy_A          153 VKTGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETP------------  220 (271)
T ss_dssp             HHHHHHHHHHHTCEEESCCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCH------------
T ss_pred             HHHHHHHHHHcCCccchhhhcccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCCCCCH------------
Confidence            321   10         0 1367999999998532        1 34467888999999999987652            


Q ss_pred             CchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          259 DFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       259 df~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                       |.+.++..++-  +-+|.+     ||++|.+++++.|++
T Consensus       221 -ll~~A~~~G~~--~i~Gl~-----MLv~Qa~~~f~lw~g  252 (271)
T 1npy_A          221 -FIRYAQARGKQ--TISGAA-----VIVLQAVEQFELYTH  252 (271)
T ss_dssp             -HHHHHHHTTCE--EECHHH-----HHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHCCCE--EECCHH-----HHHHHHHHHHHHHhC
Confidence             66777778863  445677     999999999999986

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=99.85  E-value=4.2e-22  Score=183.75  Aligned_cols=201  Identities=14%  Similarity=0.140  Sum_probs=155.1

Q ss_pred             HHHHHHH----HHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cccCCCCCc-
Q 022295           58 SMKRKAC----AEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGFHP-  131 (299)
Q Consensus        58 ~~k~k~~----~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KDVDg~~~-  131 (299)
                      .+++.++    +++|+++.|..|+  +  ++|.+.++.+.. +++.|++|++|++..+  ..+++.++| .+-+.+++. 
T Consensus        20 ~~hn~~f~~~~~~~gl~~~Y~~~~--v--~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~~d~l~~~A~~iGAVNTi   92 (269)
T 3phh_A           20 LIHNACFLTFQKELRFLGHYHPIL--L--PLESHIKSEFLH-LGLSGANVTLPFKERA--FQVCDKIKGIALECGAVNTL   92 (269)
T ss_dssp             HHHHHHHHHHHHHHSSEEEEEEEE--C--CSSSCHHHHHHH-TTEEEEEECTTCHHHH--HHHSSEECGGGGGTTCCCEE
T ss_pred             HHHHHHHHHHHHHcCCCCEEeeEE--h--hhHHHHHHHHhh-CCCCEEEEccccHHHH--HHHHhhcCHHHHHhCceeEE
Confidence            4788899    9999999999886  3  345555555554 6799999999999665  677888888 777777643 


Q ss_pred             cc-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhh---
Q 022295          132 LN-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESI---  207 (299)
Q Consensus       132 ~n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~---  207 (299)
                      ++ -|++. |++++      ..|+++.|++.+    ||+++|+|+|++ |++++..|.+.|+.|++++|+....++.   
T Consensus        93 ~~~~g~l~-G~NTD------~~Gf~~~L~~~~----~k~vlvlGaGGa-araia~~L~~~G~~v~V~nRt~~ka~~la~~  160 (269)
T 3phh_A           93 VLENDELV-GYNTD------ALGFYLSLKQKN----YQNALILGAGGS-AKALACELKKQGLQVSVLNRSSRGLDFFQRL  160 (269)
T ss_dssp             EEETTEEE-EECCH------HHHHHHHCC-------CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCTTHHHHHHH
T ss_pred             EeeCCEEE-EecCh------HHHHHHHHHHcC----CCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC
Confidence            23 35554 66555      799999998755    999999999997 9999999999999999999876543322   


Q ss_pred             ---------ccCCcEEEEecCC---CC-cCCCC----ccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhcee
Q 022295          208 ---------VREADIVIAAAGQ---AM-MIKGS----WIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCV  270 (299)
Q Consensus       208 ---------~~~ADIVIsa~g~---p~-~i~~~----~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~i  270 (299)
                               +.++|+||++|+.   |+ .++.+    .++++.+|+|+.|+| ++       +      |...++..++ 
T Consensus       161 ~~~~~~~~~l~~~DiVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P-~T-------~------ll~~A~~~G~-  225 (269)
T 3phh_A          161 GCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGF-LT-------P------FLSLAKELKT-  225 (269)
T ss_dssp             TCEEESSCCSSCCSEEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS-CC-------H------HHHHHHHTTC-
T ss_pred             CCeEecHHHhccCCEEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC-ch-------H------HHHHHHHCcC-
Confidence                     2379999998874   22 36666    678999999999998 76       2      6667777786 


Q ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          271 TPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       271 TPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                       ++-+|.+     ||++|...+++.|++
T Consensus       226 -~~~~Gl~-----MLv~Qa~~~f~lw~g  247 (269)
T 3phh_A          226 -PFQDGKD-----MLIYQAALSFEKFSA  247 (269)
T ss_dssp             -CEECSHH-----HHHHHHHHHHHHHTT
T ss_pred             -EEECCHH-----HHHHHHHHHHHHHhC
Confidence             4556676     999999999999986

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=99.85  E-value=1.9e-21  Score=177.71  Aligned_cols=200  Identities=13%  Similarity=0.136  Sum_probs=159.0

Q ss_pred             HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cccCCCCCcc-ccc
Q 022295           58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGFHPL-NIG  135 (299)
Q Consensus        58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KDVDg~~~~-n~g  135 (299)
                      .+++.+++++|+++.|..|+  ++.++|.+.++.+.  +++.|++|++|++..+  ..+++. +| .+-+.+++.+ +. 
T Consensus        17 ~~hn~~~~~~gl~~~Y~~~~--v~~~~l~~~~~~~~--~~~~G~nVT~P~K~~v--~~~~d~-~~~A~~iGAvNTi~~~-   88 (253)
T 3u62_A           17 RLYNEYFKRAGMNHSYGMEE--IPPESFDTEIRRIL--EEYDGFNATIPHKERV--MRYVEP-SEDAQRIKAVNCVFRG-   88 (253)
T ss_dssp             HHHHHHHHHHTCCCEEEEEE--CCGGGHHHHHHHHH--HHCSEEEECTTCTTGG--GGGSEE-CHHHHHHTCCCEEETT-
T ss_pred             HHHHHHHHHcCCCCEEEeEe--cCHHHHHHHHHHHh--hCCCceeecCChHHHH--HHHhCC-CHHHHHcCcceEeecC-
Confidence            47899999999999999886  77788999999887  6899999999999777  667888 88 6777666432 32 


Q ss_pred             ccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-------------
Q 022295          136 KLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-------------  201 (299)
Q Consensus       136 ~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-------------  201 (299)
                         .|+++|      ..|+++.|++.  +++| +++|||+|++ |++++..|.+.|+ +|++++|+.             
T Consensus        89 ---~G~NTD------~~G~~~~l~~~--~~~~-~vliiGaGg~-a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~  155 (253)
T 3u62_A           89 ---KGYNTD------WVGVVKSLEGV--EVKE-PVVVVGAGGA-ARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIF  155 (253)
T ss_dssp             ---EEECCH------HHHHHHHTTTC--CCCS-SEEEECCSHH-HHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEE
T ss_pred             ---EEEcch------HHHHHHHHHhc--CCCC-eEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccC
Confidence               476666      68999999876  5689 9999999997 9999999999998 899999762             


Q ss_pred             --CChhhhccCCcEEEEecC---CCC--cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCC
Q 022295          202 --TDPESIVREADIVIAAAG---QAM--MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVP  274 (299)
Q Consensus       202 --~~l~~~~~~ADIVIsa~g---~p~--~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVP  274 (299)
                        .++.+.++++|+||++|+   .|+  .++.++++++.+|+|+.|+  ++       .      |.+.++..++-.-+|
T Consensus       156 ~~~~~~~~~~~aDiVInatp~gm~p~~~~i~~~~l~~~~~V~Divy~--~T-------~------ll~~A~~~G~~~~~~  220 (253)
T 3u62_A          156 SLDQLDEVVKKAKSLFNTTSVGMKGEELPVSDDSLKNLSLVYDVIYF--DT-------P------LVVKARKLGVKHIIK  220 (253)
T ss_dssp             EGGGHHHHHHTCSEEEECSSTTTTSCCCSCCHHHHTTCSEEEECSSS--CC-------H------HHHHHHHHTCSEEEC
T ss_pred             CHHHHHhhhcCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeeCC--Cc-------H------HHHHHHHCCCcEEEC
Confidence              134466789999999886   343  3567789999999999998  44       2      555556667520256


Q ss_pred             CCccHHHHHHHHHHHHHHHHHHhcC
Q 022295          275 GGVGPMTVAMLLRNTLDGAKRVIEL  299 (299)
Q Consensus       275 GGVGp~T~a~L~~n~v~a~~~~~~~  299 (299)
                      |      ..||+.|.+.+++.|++.
T Consensus       221 G------l~MLv~Qa~~af~~wtg~  239 (253)
T 3u62_A          221 G------NLMFYYQAMENLKIWGIY  239 (253)
T ss_dssp             T------HHHHHHHHHHHHHHTTCC
T ss_pred             C------HHHHHHHHHHHHHHHhCC
Confidence            5      559999999999999863

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=99.56  E-value=2.2e-15  Score=150.15  Aligned_cols=217  Identities=17%  Similarity=0.220  Sum_probs=149.7

Q ss_pred             EECCCc-ccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-c
Q 022295           46 IVGGRK-DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-E  123 (299)
Q Consensus        46 ~vg~d~-~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~  123 (299)
                      .+|+.- -|.+- .+++.+++++|+++.|..|+  +  +++.+.++.+.. +++.|++|++|++..+  ..+++.+++ .
T Consensus       239 viG~pi~hS~SP-~~hn~~f~~~gl~~~Y~~~~--~--~~l~~~~~~~~~-~~~~G~nVTiP~K~~i--~~~ld~~~~~A  310 (523)
T 2o7s_A          239 IIGKPVSHSKSP-IVHNQAFKSVDFNGVYVHLL--V--DNLVSFLQAYSS-SDFAGFSCTIPHKEAA--LQCCDEVDPLA  310 (523)
T ss_dssp             EEESSCTTCCHH-HHHHHHHHHTTCSEEEEEEE--C--SCHHHHHHHTCS-TTEEEEEECTTCHHHH--HHHCSEECHHH
T ss_pred             EECCCccCCccH-HHHHHHHHHcCCCcEEEeEE--c--chHHHHHHHHhc-CCCCEEEECCCCHHHH--HHHhcccCHHH
Confidence            457322 33333 47899999999999999886  3  257777777764 5799999999999554  567777777 7


Q ss_pred             ccCCCCCcc-c---ccccccCCCCCccccCCHHHHHHHHHhh-------------CCCcCCcEEEEEcCCccchHHHHHH
Q 022295          124 KDVDGFHPL-N---IGKLAMKGRDPLFLPCTPKGCLELLKRS-------------GVTIKGKRAVVVGRSNIVGLPVSLL  186 (299)
Q Consensus       124 KDVDg~~~~-n---~g~l~~g~~~~~~~PcT~~av~~ll~~~-------------~~~l~gk~vvViG~s~~vG~pla~l  186 (299)
                      +.+.+++.+ |   .|++. |++++      ..|++..|+..             ..+++||+++|+|+|++ |+.++..
T Consensus       311 ~~iGAvNti~~~~~~gk~~-g~nTD------~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGi-g~aia~~  382 (523)
T 2o7s_A          311 KSIGAVNTILRRKSDGKLL-GYNTD------CIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGA-GKALAYG  382 (523)
T ss_dssp             HHHTCCSEEEECTTTCCEE-EECCH------HHHHHHHHHHHC-------------------CEEEECCSHH-HHHHHHH
T ss_pred             HHhCCCeEEEEecCCCeEE-EEcCC------HHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHH-HHHHHHH
Confidence            888777543 3   35554 55454      56888888764             13688999999999986 9999999


Q ss_pred             HhhCCCeEEEEcCCCC-----------------Chhh-hccCCcEEEEecCC---C----CcCCCCccCCCeEEEEeecc
Q 022295          187 LLKADATVTIVHSHTT-----------------DPES-IVREADIVIAAAGQ---A----MMIKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       187 L~~~gatVtv~~~~t~-----------------~l~~-~~~~ADIVIsa~g~---p----~~i~~~~vk~gavVIDvg~~  241 (299)
                      |+++|++|++++++..                 ++.+ .....|++|+++|.   |    ..+...++.+...++|+-++
T Consensus       383 L~~~G~~V~i~~R~~~~a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~  462 (523)
T 2o7s_A          383 AKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYT  462 (523)
T ss_dssp             HHHHCC-CEEEESSHHHHHHHHHHTTC-CEETTTTTTC--CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCS
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHcCCceeeHHHhhhccccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeC
Confidence            9999999999987622                 1111 12347999999984   2    12444556667899999887


Q ss_pred             CCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          242 AVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       242 ~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +..++             |...++..++.  +-+|.+     ||++|.+.+++.|++
T Consensus       463 p~~T~-------------ll~~a~~~G~~--~i~Gl~-----mlv~Qa~~~f~lwtg  499 (523)
T 2o7s_A          463 PRITR-------------LLREAEESGAI--TVSGSE-----MFVRQAYEQFEIFTG  499 (523)
T ss_dssp             SSSCH-------------HHHHHHTTTCE--EECHHH-----HHHHHHHHHHHHHHS
T ss_pred             CccCH-------------HHHHHHHCCCE--EECcHH-----HHHHHHHHHHHHHhC
Confidence            75442             34444445664  344555     999999999999986

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.52  E-value=6.8e-15  Score=143.87  Aligned_cols=185  Identities=24%  Similarity=0.333  Sum_probs=137.0

Q ss_pred             CCcEEEEEEECC------CcccHH-HHHHHHHH--HHHc-CCceeeecCCCCC-CHHHHHHHHHHhcCCCCceEEEE---
Q 022295           38 KVPGLAVVIVGG------RKDSQS-YVSMKRKA--CAEV-GIKSFDIDLPEQV-SEAELISKVHELNVMPDVHGILV---  103 (299)
Q Consensus        38 ~~P~Laii~vg~------d~~s~~-Y~~~k~k~--~~~~-Gi~~~~~~l~~~~-~~~el~~~i~~ln~d~~v~GIlv---  103 (299)
                      +...+++|.=|.      +-+.++ -=-++.|+  ++++ ||++.|+.|+  + +.++|.+.++.+.  +++.|++|   
T Consensus        62 ~~~~v~vvtdgt~ilGlG~iG~hS~sPvmh~ka~lf~~~gGid~~yi~ld--v~d~de~~~~v~~l~--~~f~GinvED~  137 (439)
T 2dvm_A           62 KGNLVAVVSDGSRILGLGNIGPLAGLPVMEGKALLFKRFGGVDAFPIMIK--EQEPNKFIDIVKAIA--PTFGGINLEDI  137 (439)
T ss_dssp             GGGEEEEEECSTTBTTTBCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECS--CCSHHHHHHHHHHTG--GGCSEEEECSC
T ss_pred             cCcEEEEEECCCeEecccceeccccCHHHHHHHHHHHHhCCCCCeeeeee--cCCHHHHHHHHHHhC--ccCcEEEEEeC
Confidence            446777775443      222221 22256666  9999 8999999996  5 6789999999997  78999999   


Q ss_pred             eCCCCCCCCHHHHHccCCccccCCCCCccc--ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchH
Q 022295          104 QLPLPKHINEEKVLGEISLEKDVDGFHPLN--IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGL  181 (299)
Q Consensus       104 q~Plp~~i~~~~i~~~i~p~KDVDg~~~~n--~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~  181 (299)
                      +.|++     .++++.++.  -|+  ++++  -|+..        -..+..|++..|+..+.++++++|+|+|+|++ |+
T Consensus       138 T~P~k-----~~il~~l~~--avN--t~vf~dD~~gt--------gntd~aG~~~AL~~~g~~l~~~rvlvlGAGgA-g~  199 (439)
T 2dvm_A          138 ASPKC-----FYILERLRE--ELD--IPVFHDDQQGT--------AAVVLAGLLNALKVVGKKISEITLALFGAGAA-GF  199 (439)
T ss_dssp             CTTHH-----HHHHHHHHH--HCS--SCEEEHHHHHH--------HHHHHHHHHHHHHHHTCCTTTCCEEEECCSHH-HH
T ss_pred             CCchH-----HHHHHHHHH--hcC--EEEEeCCCcEE--------eehHHHHHHHHHHHhCCCccCCEEEEECccHH-HH
Confidence            99988     456665543  111  2222  11111        13446899999999999999999999999998 99


Q ss_pred             HHHHHHhhCCC---eEEEEc----CC----C-CC-----------------------hhhhccCCcEEEEecCCC-CcCC
Q 022295          182 PVSLLLLKADA---TVTIVH----SH----T-TD-----------------------PESIVREADIVIAAAGQA-MMIK  225 (299)
Q Consensus       182 pla~lL~~~ga---tVtv~~----~~----t-~~-----------------------l~~~~~~ADIVIsa~g~p-~~i~  225 (299)
                      .++.+|...|+   .|++|+    |+    . .+                       +.+.++++|++|++|+.| +.++
T Consensus       200 aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~~G~~~  279 (439)
T 2dvm_A          200 ATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIK  279 (439)
T ss_dssp             HHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCCSSSSC
T ss_pred             HHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCCEEEEcCCCccCCCC
Confidence            99999999998   799999    64    1 12                       335567899999999985 7777


Q ss_pred             CCc---cCCCeEEEEeeccCCCC
Q 022295          226 GSW---IKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       226 ~~~---vk~gavVIDvg~~~~~~  245 (299)
                      +++   +.++.+|+|+ +||.++
T Consensus       280 ~e~v~~m~~~~iVfDL-ynP~~t  301 (439)
T 2dvm_A          280 PQWIEKMNEDAIVFPL-ANPVPE  301 (439)
T ss_dssp             HHHHTTSCTTCEEEEC-CSSSCS
T ss_pred             hHHHHhcCCCCEEEEC-CCCCCc
Confidence            655   4678999999 998765

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.12  E-value=2.8e-10  Score=105.26  Aligned_cols=120  Identities=23%  Similarity=0.410  Sum_probs=93.5

Q ss_pred             HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------CChhhhccCCcEEEEecCCCC
Q 022295          159 KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       159 ~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      +..+.++.|+++.|||.|.+ |+.++..|...|++|++++++.                .++.+.+++||+||++++. +
T Consensus       149 ~~~~~~l~g~~v~IiG~G~i-G~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~  226 (300)
T 2rir_A          149 QHTDYTIHGSQVAVLGLGRT-GMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-M  226 (300)
T ss_dssp             HTCSSCSTTSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-C
T ss_pred             HhcCCCCCCCEEEEEcccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-h
Confidence            44678999999999999885 9999999999999999998652                2455678899999999986 5


Q ss_pred             cCCC---CccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhcee---cc-CCCCccHHHHHHHHHHHHHHHH
Q 022295          223 MIKG---SWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCV---TP-VPGGVGPMTVAMLLRNTLDGAK  294 (299)
Q Consensus       223 ~i~~---~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~i---TP-VPGGVGp~T~a~L~~n~v~a~~  294 (299)
                      +++.   +.+++|+++||+++.+.             +++| +.....+..   .| +||+++|.|.+.|+.|.+..+-
T Consensus       227 ~i~~~~~~~mk~g~~lin~a~g~~-------------~~~~-~~a~~~G~~~i~~pg~~g~v~~a~a~~l~~~~~~~~l  291 (300)
T 2rir_A          227 ILNQTVLSSMTPKTLILDLASRPG-------------GTDF-KYAEKQGIKALLAPGLPGIVAPKTAGQILANVLSKLL  291 (300)
T ss_dssp             CBCHHHHTTSCTTCEEEECSSTTC-------------SBCH-HHHHHHTCEEEECCCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhCHHHHHhCCCCCEEEEEeCCCC-------------CcCH-HHHHHCCCEEEECCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            6654   44689999999997542             2345 333334432   36 8899999999999999887654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.10  E-value=1.1e-11  Score=113.86  Aligned_cols=209  Identities=16%  Similarity=0.105  Sum_probs=137.8

Q ss_pred             HcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCc
Q 022295           66 EVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPL  145 (299)
Q Consensus        66 ~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~  145 (299)
                      +.|++..|..++  ++.++|.+.++.+--.....|.+++.|+....+-..+.+.++..+ .--+.++|.-.+. .  .. 
T Consensus        24 ~~g~~~~y~~~~--v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~-~~~~gavnt~~~~-~--~~-   96 (287)
T 1lu9_A           24 DGGADHITGYGN--VTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVK-KRFFGPFRVSCML-D--SN-   96 (287)
T ss_dssp             HTTCSEEEEESS--CCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHH-HHCBTTBCCEEEE-C--ST-
T ss_pred             ccCcceEeccCC--cCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHH-HhcCCCeEEEEec-C--CC-
Confidence            799999988884  778899999999744456888888888766555544444433222 1112444543221 1  11 


Q ss_pred             cccCCHHHHHHHHHhh-CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------C-
Q 022295          146 FLPCTPKGCLELLKRS-GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------D-  203 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~-~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~-  203 (299)
                      =...+..|+++.|++. +.+++||+++|+|+++-+|+.++..|+++|++|++++++..                    + 
T Consensus        97 G~nTd~~g~~~~l~~~~~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~  176 (287)
T 1lu9_A           97 GSNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAET  176 (287)
T ss_dssp             THHHHHHHHHHHHHHHTTSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred             cCCchHHHHHHHHHHhhccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecC
Confidence            1345689999999988 88999999999994444599999999999999999987521                    1 


Q ss_pred             -----hhhhccCCcEEEEecCCCC---cC-CCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhh------hhhc
Q 022295          204 -----PESIVREADIVIAAAGQAM---MI-KGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEAC------KVAG  268 (299)
Q Consensus       204 -----l~~~~~~ADIVIsa~g~p~---~i-~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~------~~a~  268 (299)
                           +.+.+.++|+||+++|...   .+ +.+.+.+...++|+-+.+..        .+.| ..|....      +..+
T Consensus       177 ~~~~~~~~~~~~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~--------~i~~-t~ll~~a~~~~~~~~~G  247 (287)
T 1lu9_A          177 ADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL--------GIGG-IDATDKGKEYGGKRAFG  247 (287)
T ss_dssp             CSHHHHHHHTTTCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC--------SBTT-SCTTCEEEEETTEEEEC
T ss_pred             CCHHHHHHHHHhCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH--------Hhhc-chHHhhccccCCCcccc
Confidence                 2345667899999997421   11 33345777899999887643        0111 1122222      3334


Q ss_pred             eeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295          269 CVTPVPGGVGPMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       269 ~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~  298 (299)
                      +.  +-+|.+     ||++|...+ +.|.+
T Consensus       248 ~~--~v~gl~-----ml~~qa~~a-~~~~~  269 (287)
T 1lu9_A          248 AL--GIGGLK-----LKLHRACIA-KLFES  269 (287)
T ss_dssp             HH--HHHHHH-----HHHHHHHHH-HHTSC
T ss_pred             ce--eECchH-----HHHHHHHHH-HHhhC
Confidence            32  334444     999999877 66653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.02  E-value=7.7e-10  Score=91.05  Aligned_cols=90  Identities=19%  Similarity=0.420  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-----------------CCChhhhccCC
Q 022295          149 CTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-----------------TTDPESIVREA  211 (299)
Q Consensus       149 cT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-----------------t~~l~~~~~~A  211 (299)
                      +++...++.++...    |++++|||.|.+ |+.++..|...|++|++++++                 ..++.+.++++
T Consensus         7 sv~~~a~~~~~~~~----~~~v~iiG~G~i-G~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   81 (144)
T 3oj0_A            7 SIPSIVYDIVRKNG----GNKILLVGNGML-ASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNN   81 (144)
T ss_dssp             SHHHHHHHHHHHHC----CCEEEEECCSHH-HHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTC
T ss_pred             cHHHHHHHHHHhcc----CCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCC
Confidence            44666777777664    899999998775 999999999999999999865                 23566778899


Q ss_pred             cEEEEecCCCCc-CCCCccCCCeEEEEeeccCC
Q 022295          212 DIVIAAAGQAMM-IKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       212 DIVIsa~g~p~~-i~~~~vk~gavVIDvg~~~~  243 (299)
                      |+||++||.++. ++.+++++|.+++|+|.++.
T Consensus        82 Divi~at~~~~~~~~~~~l~~g~~vid~~~p~~  114 (144)
T 3oj0_A           82 DVIITATSSKTPIVEERSLMPGKLFIDLGNPPN  114 (144)
T ss_dssp             SEEEECSCCSSCSBCGGGCCTTCEEEECCSSCS
T ss_pred             CEEEEeCCCCCcEeeHHHcCCCCEEEEccCCcc
Confidence            999999998764 68899999999999998654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.97  E-value=1.8e-09  Score=99.57  Aligned_cols=128  Identities=22%  Similarity=0.373  Sum_probs=95.7

Q ss_pred             CHHHHHH-HHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------CChhhhccCCc
Q 022295          150 TPKGCLE-LLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------TDPESIVREAD  212 (299)
Q Consensus       150 T~~av~~-ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------~~l~~~~~~AD  212 (299)
                      ++..++. +|...+.++.||++.|||.|.+ |+.++..|...|++|++++++.                .++.+.+++||
T Consensus       137 vae~a~~~~l~~~~~~l~g~~v~IiG~G~i-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aD  215 (293)
T 3d4o_A          137 TAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVD  215 (293)
T ss_dssp             HHHHHHHHHHHHCSSCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCS
T ss_pred             HHHHHHHHHHHhcCCCCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCC
Confidence            3444444 5566788999999999999886 9999999999999999998652                13556789999


Q ss_pred             EEEEecCCCCcCCCC---ccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhce----eccCCCCccHHHHHHH
Q 022295          213 IVIAAAGQAMMIKGS---WIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGC----VTPVPGGVGPMTVAML  285 (299)
Q Consensus       213 IVIsa~g~p~~i~~~---~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~----iTPVPGGVGp~T~a~L  285 (299)
                      +||.+++. +++..+   .+++|+++||++..+.             +++| +..+..+.    +.-.|+.++|.|.+.+
T Consensus       216 vVi~~~p~-~~i~~~~l~~mk~~~~lin~ar~~~-------------~~~~-~~a~~~Gv~~~~~~~l~~~v~p~~a~~~  280 (293)
T 3d4o_A          216 VCINTIPA-LVVTANVLAEMPSHTFVIDLASKPG-------------GTDF-RYAEKRGIKALLVPGLPGIVAPKTAGRI  280 (293)
T ss_dssp             EEEECCSS-CCBCHHHHHHSCTTCEEEECSSTTC-------------SBCH-HHHHHHTCEEEECCCHHHHHCHHHHHHH
T ss_pred             EEEECCCh-HHhCHHHHHhcCCCCEEEEecCCCC-------------CCCH-HHHHHCCCEEEECCCCCcccCHHHHHHH
Confidence            99999864 566543   3589999999997542             2356 33333332    1346778889999999


Q ss_pred             HHHHHHHH
Q 022295          286 LRNTLDGA  293 (299)
Q Consensus       286 ~~n~v~a~  293 (299)
                      +.|.+..+
T Consensus       281 ~~~~~~~~  288 (293)
T 3d4o_A          281 LADVLVKL  288 (293)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.90  E-value=2.1e-09  Score=104.78  Aligned_cols=94  Identities=23%  Similarity=0.341  Sum_probs=81.1

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCc
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREAD  212 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~AD  212 (299)
                      .++|+...+-.+++..+..+.||+|+|+|.|.+ |+++|+.|...|++|++++++.             .++.+.+++||
T Consensus       190 ~~Gt~~slldgi~ratg~~L~GktVgIiG~G~I-G~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~AD  268 (436)
T 3h9u_A          190 LYGCRESLVDGIKRATDVMIAGKTACVCGYGDV-GKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAH  268 (436)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCS
T ss_pred             cccchHHHHHHHHHhcCCcccCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCC
Confidence            456666556666667899999999999999986 9999999999999999998642             36788999999


Q ss_pred             EEEEecCCCCcCCCCcc---CCCeEEEEeec
Q 022295          213 IVIAAAGQAMMIKGSWI---KPGAAVIDVGT  240 (299)
Q Consensus       213 IVIsa~g~p~~i~~~~v---k~gavVIDvg~  240 (299)
                      |||+++|..++|+.+++   |+|++|||+|.
T Consensus       269 VVilt~gt~~iI~~e~l~~MK~gAIVINvgR  299 (436)
T 3h9u_A          269 IFVTTTGNDDIITSEHFPRMRDDAIVCNIGH  299 (436)
T ss_dssp             EEEECSSCSCSBCTTTGGGCCTTEEEEECSS
T ss_pred             EEEECCCCcCccCHHHHhhcCCCcEEEEeCC
Confidence            99999999999998886   89999999994

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.80  E-value=6.3e-09  Score=101.75  Aligned_cols=95  Identities=23%  Similarity=0.287  Sum_probs=78.5

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcE
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADI  213 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADI  213 (299)
                      +.|.-..+-.+.+..+..+.||+|+|+|.|.+ |+.+|+.|...|++|+++++.             ..++.+.+++|||
T Consensus       227 yG~~eslvdgI~Ratg~~L~GKTVgVIG~G~I-Gr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADI  305 (464)
T 3n58_A          227 YGCKESLVDGIRRGTDVMMAGKVAVVCGYGDV-GKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADI  305 (464)
T ss_dssp             HHHHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSE
T ss_pred             hcchHHHHHHHHHhcCCcccCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCE
Confidence            33433334444456799999999999999985 999999999999999999753             2367889999999


Q ss_pred             EEEecCCCCcCCCCcc---CCCeEEEEeeccC
Q 022295          214 VIAAAGQAMMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       214 VIsa~g~p~~i~~~~v---k~gavVIDvg~~~  242 (299)
                      ||+++|.+++|+.+++   |+|+++|++|...
T Consensus       306 Vv~atgt~~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          306 VVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             EEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred             EEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence            9999999999998776   9999999999643

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.80  E-value=1.5e-08  Score=97.37  Aligned_cols=184  Identities=26%  Similarity=0.315  Sum_probs=128.6

Q ss_pred             CcEEEEEEECCCc---ccHHH------HHHHHHHHHH-cCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 022295           39 VPGLAVVIVGGRK---DSQSY------VSMKRKACAE-VGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLP  108 (299)
Q Consensus        39 ~P~Laii~vg~d~---~s~~Y------~~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp  108 (299)
                      ...++++.=|+.-   ++..|      ...|...++. -||++.-+++... +.+|+.+.++.+-  |.+.||.+     
T Consensus        69 ~~~V~VvTdg~~vLGlGD~G~~ag~pI~egK~~Lf~~~agid~~pi~ldv~-~~dE~v~~vk~~~--p~f~~i~l-----  140 (388)
T 1vl6_A           69 WNTVAVVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADIDAFPICLSES-EEEKIISIVKSLE--PSFGGINL-----  140 (388)
T ss_dssp             GGEEEEEECSTTBTTTBSCCHHHHHHHHHHHHHHHHHHHCCEEEEEECSCC-CHHHHHHHHHHTG--GGCSEEEE-----
T ss_pred             CCeEEEEECCccccCCCccccccCCcchhCHHHHHHhccCCceEeEEeCCC-CHHHHHHHHHHcC--CcceEeCH-----
Confidence            3466666544332   22333      2456666664 6899888888633 6889999999876  66778754     


Q ss_pred             CCCCH---HHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHH
Q 022295          109 KHINE---EKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL  185 (299)
Q Consensus       109 ~~i~~---~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~  185 (299)
                      +.+..   -++.+....+-|+.-||.--.          +-...+..|++..++-.+.+++..+|+|+|+|.+ |..++.
T Consensus       141 ED~~~p~af~il~r~r~~~~Ipvf~DDiq----------GTasV~lAal~~A~~i~g~~l~~~kVVv~GAGaA-G~~iAk  209 (388)
T 1vl6_A          141 EDIGAPKCFRILQRLSEEMNIPVFHDDQQ----------GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAA-GYNIVK  209 (388)
T ss_dssp             CSCCTTHHHHHHHHHHHHCSSCEEEHHHH----------HHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHH-HHHHHH
T ss_pred             hhcCCHHHHHHHHHhhhhcCcceeccccc----------cHHHHHHHHHHHHHHHhCCCCCCcEEEEECCCHH-HHHHHH
Confidence            23322   223333332334444442112          2233446677788888888999999999999886 999999


Q ss_pred             HHhhCCC-eEEEEcCC----C------------------------CChhhhccCCcEEEEecCCCCcCCCCccC---CCe
Q 022295          186 LLLKADA-TVTIVHSH----T------------------------TDPESIVREADIVIAAAGQAMMIKGSWIK---PGA  233 (299)
Q Consensus       186 lL~~~ga-tVtv~~~~----t------------------------~~l~~~~~~ADIVIsa~g~p~~i~~~~vk---~ga  233 (299)
                      +|...|+ .|++|+++    .                        .+|.+.++.||++|.+++ |+++++||++   ++.
T Consensus       210 ll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa-p~l~t~emVk~Ma~~p  288 (388)
T 1vl6_A          210 FLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR-GNILKPEWIKKMSRKP  288 (388)
T ss_dssp             HHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC-SSCSCHHHHTTSCSSC
T ss_pred             HHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC-CCccCHHHHHhcCCCC
Confidence            9999998 89999986    1                        247899999999999998 8999999985   578


Q ss_pred             EEEEeeccCC
Q 022295          234 AVIDVGTNAV  243 (299)
Q Consensus       234 vVIDvg~~~~  243 (299)
                      +|+|++ ||.
T Consensus       289 IIfalS-NPt  297 (388)
T 1vl6_A          289 VIFALA-NPV  297 (388)
T ss_dssp             EEEECC-SSS
T ss_pred             EEEEcC-CCC
Confidence            999999 444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.72  E-value=2.9e-08  Score=95.34  Aligned_cols=121  Identities=19%  Similarity=0.219  Sum_probs=83.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------------------------Chh
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------------------------DPE  205 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------------------------~l~  205 (299)
                      +.+++|+|+|.|. +|..++..|...|+.|++++++..                                       ++.
T Consensus       182 v~~~kV~ViG~G~-iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          182 VKPASALVLGVGV-AGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             ECCCEEEEESCSH-HHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            5889999999877 599999999999999999976521                                       345


Q ss_pred             hhccCCcEEEEecCC-----CCcCCCCcc---CCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhh-hceeccCCCC
Q 022295          206 SIVREADIVIAAAGQ-----AMMIKGSWI---KPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV-AGCVTPVPGG  276 (299)
Q Consensus       206 ~~~~~ADIVIsa~g~-----p~~i~~~~v---k~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~-a~~iTPVPGG  276 (299)
                      +.+++|||||+++..     |++|+.+++   |||+++||+++.+-  ++.. ..+ -+.+ |.. ..+ .-..+=.||-
T Consensus       261 e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~G--G~~e-~t~-~~~~-~~~-~gV~~~~v~nlP~~  334 (381)
T 3p2y_A          261 DAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETG--GNCE-LTE-PGRT-IVH-HGVTITSPLNLPAT  334 (381)
T ss_dssp             HHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGT--CSBT-TCC-TTCE-EEE-TTEEEECCSCTGGG
T ss_pred             HHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCC--Cccc-ccc-CCCe-EEE-CCEEEEeeCCCchh
Confidence            788999999998743     457888886   78999999998752  1100 000 0000 110 111 1123447888


Q ss_pred             ccHHHHHHHHHHHHHHH
Q 022295          277 VGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       277 VGp~T~a~L~~n~v~a~  293 (299)
                      + |.|.+.++.|.+..+
T Consensus       335 v-p~tAS~~~s~~l~~~  350 (381)
T 3p2y_A          335 M-PEHASELYAKNVTAL  350 (381)
T ss_dssp             S-HHHHHHHHHHHHHHH
T ss_pred             h-HHHHHHHHHHHHHHH
Confidence            8 888888887766544

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.70  E-value=3.2e-08  Score=96.39  Aligned_cols=92  Identities=22%  Similarity=0.358  Sum_probs=77.6

Q ss_pred             CHHHHHHHHH-hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcEEE
Q 022295          150 TPKGCLELLK-RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADIVI  215 (299)
Q Consensus       150 T~~av~~ll~-~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADIVI  215 (299)
                      |...++.-+. ..+..+.||+|+|+|.|.+ |+.+|+.|...|++|++++++             ..++.+.+++||+||
T Consensus       202 t~~s~~~gi~rat~~~L~GktV~ViG~G~I-Gk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi  280 (435)
T 3gvp_A          202 CRESILDGLKRTTDMMFGGKQVVVCGYGEV-GKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVI  280 (435)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEE
T ss_pred             hHHHHHHHHHHhhCceecCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEE
Confidence            4455555444 4678999999999999985 999999999999999999864             236788999999999


Q ss_pred             EecCCCCcCCCCcc---CCCeEEEEeeccC
Q 022295          216 AAAGQAMMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       216 sa~g~p~~i~~~~v---k~gavVIDvg~~~  242 (299)
                      +++|.+++|+.+++   |+|+++|++|...
T Consensus       281 ~atgt~~lI~~e~l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          281 TCTGNKNVVTREHLDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             ECSSCSCSBCHHHHHHSCTTEEEEECSSTT
T ss_pred             ECCCCcccCCHHHHHhcCCCcEEEEecCCC
Confidence            99999999997775   9999999999754

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.54  E-value=1.5e-07  Score=93.17  Aligned_cols=83  Identities=28%  Similarity=0.335  Sum_probs=72.3

Q ss_pred             hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCCCCcCCC
Q 022295          160 RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQAMMIKG  226 (299)
Q Consensus       160 ~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~p~~i~~  226 (299)
                      ..+..+.||+|+|||.|.+ |+.+|+.|...|++|++++++.             .++.+.+++||+||++++.+++|+.
T Consensus       270 ~~g~~L~GktVgIIG~G~I-G~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~~t~~lI~~  348 (494)
T 3d64_A          270 ATDVMIAGKIAVVAGYGDV-GKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINH  348 (494)
T ss_dssp             HHCCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECSSSSCSBCH
T ss_pred             ccccccCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECCCcccccCH
Confidence            4678899999999999885 9999999999999999998653             2577889999999999998899987


Q ss_pred             Ccc---CCCeEEEEeeccCC
Q 022295          227 SWI---KPGAAVIDVGTNAV  243 (299)
Q Consensus       227 ~~v---k~gavVIDvg~~~~  243 (299)
                      +++   |+|+++||+|.-..
T Consensus       349 ~~l~~MK~gAilINvgrg~v  368 (494)
T 3d64_A          349 DHMKAMRHNAIVCNIGHFDS  368 (494)
T ss_dssp             HHHHHCCTTEEEEECSSSSC
T ss_pred             HHHhhCCCCcEEEEcCCCcc
Confidence            664   99999999997654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=98.53  E-value=1.4e-07  Score=90.91  Aligned_cols=165  Identities=24%  Similarity=0.327  Sum_probs=120.9

Q ss_pred             HHHHHHHHH-cCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCH---HHHHccCCccccCCCCCccc
Q 022295           58 SMKRKACAE-VGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINE---EKVLGEISLEKDVDGFHPLN  133 (299)
Q Consensus        58 ~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~---~~i~~~i~p~KDVDg~~~~n  133 (299)
                      ..|...++. -||++.-+++... +.+|+.+.++.+-  |.+.||.+.     .+..   -++++.....-|+.-||.--
T Consensus        93 eGK~~Lf~~~agid~~pi~Ldv~-~~dEfv~~v~~~~--p~F~~I~lE-----D~~~p~~f~il~~~r~~~~ipvf~DDi  164 (398)
T 2a9f_A           93 EGKAALFKAFAGVDAIPIVLDTK-DTEEIISIVKALA--PTFGGINLE-----DISAPRCFEIEQRLIKECHIPVFHDDQ  164 (398)
T ss_dssp             HHHHHHHHHHSSCEEEEEECCCC-CHHHHHHHHHHHG--GGCSEEEEC-----SCCTTHHHHHHHHHHHHCSSCEEEHHH
T ss_pred             hCHHHHHHhccCCceeeeEeCCC-CHHHHHHHHHHcC--CceeEeccc-----cCCChHHHHHHHHhhhcCCcceecchh
Confidence            456666665 6899888888643 5889999999987  678887763     3322   22333332222344444222


Q ss_pred             ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC------------
Q 022295          134 IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH------------  200 (299)
Q Consensus       134 ~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~------------  200 (299)
                      .|          -.-.+..|.+..++-.|.+++..+|+|+|+|.+ |..++.+|...|+ .|++|+++            
T Consensus       165 qG----------Ta~V~lAall~al~l~g~~l~d~kVVi~GAGaA-G~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~  233 (398)
T 2a9f_A          165 HG----------TAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSA-GLSITRKLLAAGATKVTVVDKFGIINEQEAAQLA  233 (398)
T ss_dssp             HH----------HHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCC
T ss_pred             hh----------HHHHHHHHHHHHHHHhCCCCCccEEEEECCCHH-HHHHHHHHHHcCCCeEEEEECCCcccCCccccch
Confidence            22          223346778888888899999999999998775 9999999999999 99999865            


Q ss_pred             ---------------CCChhhhccCCcEEEEecCCCCcCCCCcc---CCCeEEEEeeccCC
Q 022295          201 ---------------TTDPESIVREADIVIAAAGQAMMIKGSWI---KPGAAVIDVGTNAV  243 (299)
Q Consensus       201 ---------------t~~l~~~~~~ADIVIsa~g~p~~i~~~~v---k~gavVIDvg~~~~  243 (299)
                                     ..+|.+.++.||++|.+.+ |+++++||+   +++.+|++++ ||.
T Consensus       234 ~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sa-pgl~T~EmVk~Ma~~pIIfals-NPt  292 (398)
T 2a9f_A          234 PHHLDIAKVTNREFKSGTLEDALEGADIFIGVSA-PGVLKAEWISKMAARPVIFAMA-NPI  292 (398)
T ss_dssp             C---CHHHHHSCTTCCCSCSHHHHTTCSEEECCS-TTCCCHHHHHTSCSSCEEEECC-SSS
T ss_pred             HHHHHHhhccCcccchhhHHHHhccCCEEEecCC-CCCCCHHHHHhhCCCCEEEECC-CCC
Confidence                           1237788999999998877 999999998   5799999998 554

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.48  E-value=2e-07  Score=92.00  Aligned_cols=83  Identities=24%  Similarity=0.301  Sum_probs=71.6

Q ss_pred             hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCCCCcCCC
Q 022295          160 RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQAMMIKG  226 (299)
Q Consensus       160 ~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~p~~i~~  226 (299)
                      ..+..+.||+|+|||.|.+ |+.+|+.|...|++|++++++.             .++.+.+++||+||++++.+++|+.
T Consensus       250 ~~~~~l~GktVgIIG~G~I-G~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~~t~~lI~~  328 (479)
T 1v8b_A          250 ATDFLISGKIVVICGYGDV-GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKL  328 (479)
T ss_dssp             HHCCCCTTSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSSBCH
T ss_pred             ccccccCCCEEEEEeeCHH-HHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECCChhhhcCH
Confidence            3577899999999999885 9999999999999999998653             2577889999999999998999987


Q ss_pred             Cc---cCCCeEEEEeeccCC
Q 022295          227 SW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       227 ~~---vk~gavVIDvg~~~~  243 (299)
                      ++   +|+|+++||+|....
T Consensus       329 ~~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          329 EHLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             HHHTTCCTTCEEEECSSTTT
T ss_pred             HHHhhcCCCcEEEEeCCCCc
Confidence            55   589999999997544

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.48  E-value=2e-07  Score=90.18  Aligned_cols=133  Identities=19%  Similarity=0.240  Sum_probs=87.5

Q ss_pred             HHHHHHHhhCC----------CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------
Q 022295          153 GCLELLKRSGV----------TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------  202 (299)
Q Consensus       153 av~~ll~~~~~----------~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------  202 (299)
                      |++.-..+++.          .+.+.+|+|+|.|. +|..++.+|...||.|++++++..                    
T Consensus       166 Av~~aa~~l~~~~~~l~t~~g~v~~~kV~ViG~G~-iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~  244 (405)
T 4dio_A          166 AVIDAAYEYDRALPMMMTAAGTVPAAKIFVMGAGV-AGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEF  244 (405)
T ss_dssp             HHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC---
T ss_pred             HHHHHHHHhHhhhchhhccCCCcCCCEEEEECCcH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccc
Confidence            55555555542          45789999999876 599999999999999999976521                    


Q ss_pred             -----------------------ChhhhccCCcEEEEecC-----CCCcCCCCcc---CCCeEEEEeeccCCCCCccCCC
Q 022295          203 -----------------------DPESIVREADIVIAAAG-----QAMMIKGSWI---KPGAAVIDVGTNAVDDSTKKSG  251 (299)
Q Consensus       203 -----------------------~l~~~~~~ADIVIsa~g-----~p~~i~~~~v---k~gavVIDvg~~~~~~~~~~~g  251 (299)
                                             ++.+.+++|||||+++.     .|.+++.+|+   |||++|||+++.+-  ++.. .
T Consensus       245 ~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~G--G~~e-~  321 (405)
T 4dio_A          245 KAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERG--GNIE-G  321 (405)
T ss_dssp             --------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGT--CSBT-T
T ss_pred             cccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCC--CCcc-c
Confidence                                   34567789999999864     3557888886   78999999998652  1000 0


Q ss_pred             ceeeccCCchhhhhh-hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          252 YRLVGDVDFHEACKV-AGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       252 ~kl~GDvdf~~~~~~-a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      .+ .++. |. ...+ .-..+=.||-+ |.|...++.|.+..+
T Consensus       322 t~-~~~~-~~-~~GV~~~gv~nlP~~v-p~tAS~~ls~~~~~~  360 (405)
T 4dio_A          322 AE-AGKV-TE-VGGVRIVGHLNVAGRI-AASASLLYAKNLVTF  360 (405)
T ss_dssp             CC-TTEE-EE-ETTEEEEECSSGGGGG-HHHHHHHHHHHHHHH
T ss_pred             cC-CCCe-EE-ECCEEEEEeCCCCccC-HHHHHHHHHHHHHHH
Confidence            00 0110 11 0111 11233357777 888888877765443

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.43  E-value=9e-07  Score=84.10  Aligned_cols=81  Identities=16%  Similarity=0.245  Sum_probs=67.6

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCC-C---Cc
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQ-A---MM  223 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~-p---~~  223 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.              .++.+.+++||+|+.+++. |   ++
T Consensus       159 ~~~l~gktvGIIG~G~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  237 (351)
T 3jtm_A          159 AYDLEGKTIGTVGAGRI-GKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGM  237 (351)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             cccccCCEEeEEEeCHH-HHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHh
Confidence            56899999999999986 9999999999999999998642              3678899999999999883 2   35


Q ss_pred             CCCCc---cCCCeEEEEeeccCC
Q 022295          224 IKGSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       224 i~~~~---vk~gavVIDvg~~~~  243 (299)
                      ++.+.   +|+|+++||++.-..
T Consensus       238 i~~~~l~~mk~gailIN~aRG~~  260 (351)
T 3jtm_A          238 FNKELIGKLKKGVLIVNNARGAI  260 (351)
T ss_dssp             BSHHHHHHSCTTEEEEECSCGGG
T ss_pred             hcHHHHhcCCCCCEEEECcCchh
Confidence            66654   589999999996544

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.41  E-value=6e-07  Score=88.71  Aligned_cols=85  Identities=32%  Similarity=0.409  Sum_probs=71.8

Q ss_pred             HHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCCCC
Q 022295          156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       156 ~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      .+.+..+..+.||+|+|+|.|+ +|+.+|+.|...||+|++++++.             .++.+..+.+|+++.++|.++
T Consensus       254 gi~r~tg~~L~GKtVvVtGaGg-IG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~atG~~~  332 (488)
T 3ond_A          254 GLMRATDVMIAGKVAVVAGYGD-VGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKD  332 (488)
T ss_dssp             HHHHHHCCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECSSCSC
T ss_pred             HHHHHcCCcccCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCCCChh
Confidence            3445678899999999999996 59999999999999999997652             346677889999999999999


Q ss_pred             cCCC---CccCCCeEEEEeecc
Q 022295          223 MIKG---SWIKPGAAVIDVGTN  241 (299)
Q Consensus       223 ~i~~---~~vk~gavVIDvg~~  241 (299)
                      ++..   +.++++++|+++|..
T Consensus       333 vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          333 IIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             SBCHHHHTTSCTTEEEEESSST
T ss_pred             hhhHHHHHhcCCCeEEEEcCCC
Confidence            8866   446899999999964

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.41  E-value=1.5e-06  Score=82.97  Aligned_cols=78  Identities=27%  Similarity=0.405  Sum_probs=63.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------------C------------------------
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------------D------------------------  203 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------------~------------------------  203 (299)
                      .+.|++|+|+|.|.+ |+.++.++...|+.|++++++..                .                        
T Consensus       169 ~l~g~~V~ViGaG~i-G~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          169 TVPPARVLVFGVGVA-GLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             EECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            678999999998775 99999999999999999986521                0                        


Q ss_pred             ---hhhhccCCcEEEEec---CC--CCcCCCCc---cCCCeEEEEeeccC
Q 022295          204 ---PESIVREADIVIAAA---GQ--AMMIKGSW---IKPGAAVIDVGTNA  242 (299)
Q Consensus       204 ---l~~~~~~ADIVIsa~---g~--p~~i~~~~---vk~gavVIDvg~~~  242 (299)
                         +.+.++.||+||.++   |.  |++++.++   +++|.+++|+++++
T Consensus       248 ~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~  297 (384)
T 1l7d_A          248 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  297 (384)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCC
Confidence               556778999999999   53  45676644   58999999999865

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.40  E-value=3.4e-07  Score=88.20  Aligned_cols=91  Identities=19%  Similarity=0.282  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-----------------CChhhhccCCc
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-----------------TDPESIVREAD  212 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-----------------~~l~~~~~~AD  212 (299)
                      +...+++.+....++.|++|+|+|.|++ |+.++..|...|+ +|++++++.                 .++.+.+..+|
T Consensus       151 a~~av~~a~~~~~~l~g~~VlIiGaG~i-G~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aD  229 (404)
T 1gpj_A          151 GSAAVELAERELGSLHDKTVLVVGAGEM-GKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSD  229 (404)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEESCCHH-HHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCS
T ss_pred             HHHHHHHHHHHhccccCCEEEEEChHHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCC
Confidence            3444454442222679999999999885 9999999999998 899998752                 13445677899


Q ss_pred             EEEEecCCCCc-CCCCcc---------CCCeEEEEeeccC
Q 022295          213 IVIAAAGQAMM-IKGSWI---------KPGAAVIDVGTNA  242 (299)
Q Consensus       213 IVIsa~g~p~~-i~~~~v---------k~gavVIDvg~~~  242 (299)
                      +||++||.+.. ++.+++         .++.++||++.++
T Consensus       230 vVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~P~  269 (404)
T 1gpj_A          230 VVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR  269 (404)
T ss_dssp             EEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred             EEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccCCC
Confidence            99999998765 444333         2568999999865

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.27  E-value=1.3e-06  Score=83.93  Aligned_cols=142  Identities=19%  Similarity=0.221  Sum_probs=96.4

Q ss_pred             HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------CCChhhhccCCcEEEEecC-----
Q 022295          154 CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------TTDPESIVREADIVIAAAG-----  219 (299)
Q Consensus       154 v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------t~~l~~~~~~ADIVIsa~g-----  219 (299)
                      ++.+.++.+.++.||++.|||.|.+ |+++|..|...|++|..+++.         ..++.+.+++||+|+.+++     
T Consensus       106 lL~l~r~~g~~l~gktvGIIGlG~I-G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g  184 (381)
T 3oet_A          106 LLMLAERDGFSLRDRTIGIVGVGNV-GSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDG  184 (381)
T ss_dssp             HHHHHHHTTCCGGGCEEEEECCSHH-HHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSS
T ss_pred             HHHHHHhcCCccCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccc
Confidence            3455667789999999999999996 999999999999999999642         2468899999999998887     


Q ss_pred             ---CCCcCCCCc---cCCCeEEEEeeccCCCCCcc-----CCCceeec---cCCc------hhhhhhhceeccCCCCccH
Q 022295          220 ---QAMMIKGSW---IKPGAAVIDVGTNAVDDSTK-----KSGYRLVG---DVDF------HEACKVAGCVTPVPGGVGP  279 (299)
Q Consensus       220 ---~p~~i~~~~---vk~gavVIDvg~~~~~~~~~-----~~g~kl~G---Dvdf------~~~~~~a~~iTPVPGGVGp  279 (299)
                         ..++++.+.   +|+|+++||++.-..-+...     .+| ++.|   ||-.      +...+..-.+||=-||.-.
T Consensus       185 ~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g-~i~gA~LDV~e~EP~~~~~L~~~~~i~TPHiag~t~  263 (381)
T 3oet_A          185 PYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAG-QPLSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTL  263 (381)
T ss_dssp             TTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT-CCEEEEESCCTTTTSCCHHHHHHSSEECSSCTTCCH
T ss_pred             cccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC-CCeEEEeeccccCCCCcchhhhCCEEECCccCcCcH
Confidence               223566544   58999999999755432100     011 2333   6621      1122233468998888765


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 022295          280 MTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       280 ~T~a~L~~n~v~a~~~~~  297 (299)
                      -+..-+...+++...+++
T Consensus       264 e~~~~~~~~~~~~l~~~l  281 (381)
T 3oet_A          264 EGKARGTTQVFEAYSAFI  281 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555544444444444443

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.25  E-value=6.1e-07  Score=86.53  Aligned_cols=78  Identities=18%  Similarity=0.271  Sum_probs=62.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------------------------------
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------------------------------  202 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------------------------------  202 (299)
                      .+.|++|+|+|.|. +|..++.++...|+.|++++++..                                         
T Consensus       169 ~l~g~~V~ViGaG~-iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  247 (401)
T 1x13_A          169 KVPPAKVMVIGAGV-AGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEME  247 (401)
T ss_dssp             EECCCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHH
T ss_pred             CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHH
Confidence            36799999999877 599999999999999999986521                                         


Q ss_pred             ChhhhccCCcEEEEecCC-----CCcCCCCc---cCCCeEEEEeeccC
Q 022295          203 DPESIVREADIVIAAAGQ-----AMMIKGSW---IKPGAAVIDVGTNA  242 (299)
Q Consensus       203 ~l~~~~~~ADIVIsa~g~-----p~~i~~~~---vk~gavVIDvg~~~  242 (299)
                      ++.+.++.||+||++++.     |++++.++   +++|+++||+++++
T Consensus       248 ~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~  295 (401)
T 1x13_A          248 LFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQN  295 (401)
T ss_dssp             HHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGG
T ss_pred             HHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCC
Confidence            145667889999999644     35677655   47999999999864

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.25  E-value=6.1e-06  Score=77.86  Aligned_cols=133  Identities=17%  Similarity=0.128  Sum_probs=90.9

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCCC----CcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQA----MMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~p----~~i~  225 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       160 ~~~l~g~tvgIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  238 (335)
T 2g76_A          160 GTELNGKTLGILGLGRI-GREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLN  238 (335)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBC
T ss_pred             CcCCCcCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhC
Confidence            45799999999999886 9999999999999999988653            25678899999999998843    3565


Q ss_pred             C---CccCCCeEEEEeeccCCCCCc-----cCCCceeec---cC-------CchhhhhhhceeccCCCCccHHHHHHHHH
Q 022295          226 G---SWIKPGAAVIDVGTNAVDDST-----KKSGYRLVG---DV-------DFHEACKVAGCVTPVPGGVGPMTVAMLLR  287 (299)
Q Consensus       226 ~---~~vk~gavVIDvg~~~~~~~~-----~~~g~kl~G---Dv-------df~~~~~~a~~iTPVPGGVGp~T~a~L~~  287 (299)
                      .   +.+|+|+++||+|.-..-+..     -.+| ++.|   ||       +-+-+....-.+||-.+|.-.-+..-+.+
T Consensus       239 ~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~  317 (335)
T 2g76_A          239 DNTFAQCKKGVRVVNCARGGIVDEGALLRALQSG-QCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGE  317 (335)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT-SEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCccccCHHHHHHHHHhC-CccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHH
Confidence            4   456999999999986543310     0011 3433   54       11112223456899888887766555555


Q ss_pred             HHHHHHHHH
Q 022295          288 NTLDGAKRV  296 (299)
Q Consensus       288 n~v~a~~~~  296 (299)
                      .+++..+++
T Consensus       318 ~~~~nl~~~  326 (335)
T 2g76_A          318 EIAVQFVDM  326 (335)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            454444433

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.19  E-value=2.3e-06  Score=84.80  Aligned_cols=81  Identities=23%  Similarity=0.328  Sum_probs=68.3

Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCCCCcCCC-
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQAMMIKG-  226 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~p~~i~~-  226 (299)
                      .+..+.|++|+|+|.|. +|+.+++.|...|++|+++++..             .++.+.++.+|+||.++|.++++.. 
T Consensus       268 ~~~~l~GktV~IiG~G~-IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atgt~~~i~~~  346 (494)
T 3ce6_A          268 TDALIGGKKVLICGYGD-VGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLE  346 (494)
T ss_dssp             HCCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSSSSCSBCHH
T ss_pred             cCCCCCcCEEEEEccCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCCCHHHHHHH
Confidence            35578999999999877 59999999999999999998642             2456778899999999999998874 


Q ss_pred             --CccCCCeEEEEeeccC
Q 022295          227 --SWIKPGAAVIDVGTNA  242 (299)
Q Consensus       227 --~~vk~gavVIDvg~~~  242 (299)
                        +.+++|++++++|...
T Consensus       347 ~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          347 HIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             HHHHSCTTCEEEECSSSG
T ss_pred             HHHhcCCCcEEEEeCCCC
Confidence              4479999999999753

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.17  E-value=5.2e-06  Score=78.03  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=66.9

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCC-C---CcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQ-A---MMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~-p---~~i~  225 (299)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.            .++.+.+++||+|+.+++. |   +++.
T Consensus       135 ~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~  213 (324)
T 3hg7_A          135 YQGLKGRTLLILGTGSI-GQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFT  213 (324)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBC
T ss_pred             CcccccceEEEEEECHH-HHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhH
Confidence            46899999999999996 9999999999999999997642            2467889999999998873 3   3566


Q ss_pred             CCc---cCCCeEEEEeeccCC
Q 022295          226 GSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       226 ~~~---vk~gavVIDvg~~~~  243 (299)
                      .+.   +|+|+++||+|.-..
T Consensus       214 ~~~l~~mk~gailIN~aRG~~  234 (324)
T 3hg7_A          214 ASRFEHCKPGAILFNVGRGNA  234 (324)
T ss_dssp             TTTTTCSCTTCEEEECSCGGG
T ss_pred             HHHHhcCCCCcEEEECCCchh
Confidence            554   589999999997544

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.16  E-value=3e-06  Score=80.30  Aligned_cols=133  Identities=20%  Similarity=0.235  Sum_probs=90.7

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCC----CCcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQ----AMMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~----p~~i~  225 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|..++++.            .++.+.+++||+|+.+++.    .+++.
T Consensus       168 g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~  246 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRI-GRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLD  246 (345)
T ss_dssp             BCCCTTCEEEEESCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBC
T ss_pred             ccccCCCEEEEEEeChh-HHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhC
Confidence            46799999999999996 9999999999999999998652            3678889999999999884    24676


Q ss_pred             CCc---cCCCeEEEEeeccCCCCCcc-----CCCceeec---cCCchh-------hhhhhceeccCCCCccHHHHHHHHH
Q 022295          226 GSW---IKPGAAVIDVGTNAVDDSTK-----KSGYRLVG---DVDFHE-------ACKVAGCVTPVPGGVGPMTVAMLLR  287 (299)
Q Consensus       226 ~~~---vk~gavVIDvg~~~~~~~~~-----~~g~kl~G---Dvdf~~-------~~~~a~~iTPVPGGVGp~T~a~L~~  287 (299)
                      .+.   +|+|+++||++.-..-+...     .+| ++.|   ||-..+       ..-..-.+||=-||.-.-+..-+.+
T Consensus       247 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~  325 (345)
T 4g2n_A          247 HDRIAKIPEGAVVINISRGDLINDDALIEALRSK-HLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGW  325 (345)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT-SEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC-CceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHHH
Confidence            654   58999999999654322100     001 3444   551111       1112346888777776655555555


Q ss_pred             HHHHHHHHH
Q 022295          288 NTLDGAKRV  296 (299)
Q Consensus       288 n~v~a~~~~  296 (299)
                      .+++..+++
T Consensus       326 ~~~~ni~~~  334 (345)
T 4g2n_A          326 LLIQGIEAL  334 (345)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555444444

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.16  E-value=3.3e-06  Score=81.08  Aligned_cols=142  Identities=17%  Similarity=0.140  Sum_probs=94.4

Q ss_pred             HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------CCChhhhccCCcEEEEecCC----
Q 022295          154 CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------TTDPESIVREADIVIAAAGQ----  220 (299)
Q Consensus       154 v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------t~~l~~~~~~ADIVIsa~g~----  220 (299)
                      ++.+.++.+.++.||++.|||.|.+ |+.+|..|...|++|+.+++.         ..++.+.+++||+|+.+++.    
T Consensus       103 lL~l~r~~~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g  181 (380)
T 2o4c_A          103 LLAMAEVRGADLAERTYGVVGAGQV-GGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDG  181 (380)
T ss_dssp             HHHHHHHHTCCGGGCEEEEECCSHH-HHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSS
T ss_pred             HHHHHhhhhcccCCCEEEEEeCCHH-HHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCcccc
Confidence            3455566788999999999999886 999999999999999998632         24678889999999988862    


Q ss_pred             ----CCcCCCC---ccCCCeEEEEeeccCCCCCc-----cCCCc--eeeccCCc------hhhhhhhceeccCCCCccHH
Q 022295          221 ----AMMIKGS---WIKPGAAVIDVGTNAVDDST-----KKSGY--RLVGDVDF------HEACKVAGCVTPVPGGVGPM  280 (299)
Q Consensus       221 ----p~~i~~~---~vk~gavVIDvg~~~~~~~~-----~~~g~--kl~GDvdf------~~~~~~a~~iTPVPGGVGp~  280 (299)
                          .++++.+   .+|+|+++||++.....+..     -..|.  ...=||-.      +...+..-.+||=-+|.-.-
T Consensus       182 ~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~~nvi~TPHiag~t~e  261 (380)
T 2o4c_A          182 EHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAARCLIATPHIAGYSLE  261 (380)
T ss_dssp             SSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHTTCSEECSSCTTCCHH
T ss_pred             ccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhccCCEEEccccCcCCHH
Confidence                2356543   45899999999976543310     00010  12335511      11222234689988887766


Q ss_pred             HHHHHHHHHHHHHHHH
Q 022295          281 TVAMLLRNTLDGAKRV  296 (299)
Q Consensus       281 T~a~L~~n~v~a~~~~  296 (299)
                      +..-....+++...++
T Consensus       262 ~~~~~~~~~~~nl~~~  277 (380)
T 2o4c_A          262 GKLRGTAQIYQAYCAW  277 (380)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5554444444444443

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.12  E-value=3.5e-06  Score=79.28  Aligned_cols=133  Identities=18%  Similarity=0.224  Sum_probs=89.0

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCC----CCcC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQ----AMMI  224 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~----p~~i  224 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.             .++.+.+++||+|+.+++.    .+++
T Consensus       140 ~~~l~g~tvGIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li  218 (330)
T 4e5n_A          140 GTGLDNATVGFLGMGAI-GLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLV  218 (330)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CCccCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHh
Confidence            45789999999999986 9999999999999999998653             2466889999999999883    2356


Q ss_pred             CCC---ccCCCeEEEEeeccCCCCCcc-----CCCcee---eccCCchh---------------hhhhhceeccCCCCcc
Q 022295          225 KGS---WIKPGAAVIDVGTNAVDDSTK-----KSGYRL---VGDVDFHE---------------ACKVAGCVTPVPGGVG  278 (299)
Q Consensus       225 ~~~---~vk~gavVIDvg~~~~~~~~~-----~~g~kl---~GDvdf~~---------------~~~~a~~iTPVPGGVG  278 (299)
                      ..+   .+|+|+++||+|.-..-+...     .+| ++   .=||-..+               ..-..-.+||=-||.-
T Consensus       219 ~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g-~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t  297 (330)
T 4e5n_A          219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERG-QLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV  297 (330)
T ss_dssp             CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT-SEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCC
T ss_pred             CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC-CccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCCh
Confidence            654   468999999999654322100     001 23   22552111               1111346888778877


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 022295          279 PMTVAMLLRNTLDGAKRV  296 (299)
Q Consensus       279 p~T~a~L~~n~v~a~~~~  296 (299)
                      .-+..-+...+++..+++
T Consensus       298 ~e~~~~~~~~~~~ni~~~  315 (330)
T 4e5n_A          298 RAVRLEIERCAAQNILQA  315 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            655555555555444443

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.12  E-value=2e-05  Score=73.40  Aligned_cols=132  Identities=23%  Similarity=0.288  Sum_probs=89.4

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------CChhhhccCCcEEEEecCCC----CcCCC---C
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------TDPESIVREADIVIAAAGQA----MMIKG---S  227 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------~~l~~~~~~ADIVIsa~g~p----~~i~~---~  227 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.       .++.+.+++||+|+.+++..    ++++.   .
T Consensus       139 ~~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~  217 (311)
T 2cuk_A          139 GLDLQGLTLGLVGMGRI-GQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLF  217 (311)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHT
T ss_pred             CcCCCCCEEEEEEECHH-HHHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHh
Confidence            35789999999999886 9999999999999999988653       25778899999999998742    35653   3


Q ss_pred             ccCCCeEEEEeeccCCCCCc-----cCCCceeec---cCCc--------hhhhhhhceeccCCCCccHHHHHHHHHHHHH
Q 022295          228 WIKPGAAVIDVGTNAVDDST-----KKSGYRLVG---DVDF--------HEACKVAGCVTPVPGGVGPMTVAMLLRNTLD  291 (299)
Q Consensus       228 ~vk~gavVIDvg~~~~~~~~-----~~~g~kl~G---Dvdf--------~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~  291 (299)
                      .+|+|+++||++.....+..     -. | ++-|   ||-.        +-.....-.+||-.+|.-.-+..-+.+..++
T Consensus       218 ~mk~ga~lin~srg~~vd~~aL~~aL~-g-~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~  295 (311)
T 2cuk_A          218 AMKRGAILLNTARGALVDTEALVEALR-G-HLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE  295 (311)
T ss_dssp             TSCTTCEEEECSCGGGBCHHHHHHHHT-T-TSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHH
T ss_pred             hCCCCcEEEECCCCCccCHHHHHHHHh-C-cCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHH
Confidence            56899999999976543310     00 1 2322   4421        1112234578998888776655555554444


Q ss_pred             HHHHH
Q 022295          292 GAKRV  296 (299)
Q Consensus       292 a~~~~  296 (299)
                      ..+++
T Consensus       296 nl~~~  300 (311)
T 2cuk_A          296 NLLAV  300 (311)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.12  E-value=3.3e-06  Score=79.38  Aligned_cols=81  Identities=16%  Similarity=0.254  Sum_probs=66.6

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCC----CCcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQ----AMMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~----p~~i~  225 (299)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.            .++.+.+++||+|+.+++.    .+++.
T Consensus       132 ~~~l~gktvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~  210 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQI-GQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFS  210 (324)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBS
T ss_pred             CccccCCeEEEECcCHH-HHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcC
Confidence            56899999999999986 9999999999999999987642            2466889999999998873    34666


Q ss_pred             CCc---cCCCeEEEEeeccCC
Q 022295          226 GSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       226 ~~~---vk~gavVIDvg~~~~  243 (299)
                      .+.   +|+|+++||+|.-..
T Consensus       211 ~~~l~~mk~gailIN~aRG~~  231 (324)
T 3evt_A          211 TELFQQTKQQPMLINIGRGPA  231 (324)
T ss_dssp             HHHHHTCCSCCEEEECSCGGG
T ss_pred             HHHHhcCCCCCEEEEcCCChh
Confidence            544   589999999996543

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.11  E-value=3e-06  Score=79.26  Aligned_cols=81  Identities=12%  Similarity=0.137  Sum_probs=66.3

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------ChhhhccCCcEEEEecCC----CCcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------DPESIVREADIVIAAAGQ----AMMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------~l~~~~~~ADIVIsa~g~----p~~i~  225 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++..            ++.+.+++||+|+.+++.    .+++.
T Consensus       134 ~~~l~g~tvGIiG~G~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~  212 (315)
T 3pp8_A          134 EYTREEFSVGIMGAGVL-GAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIIN  212 (315)
T ss_dssp             CCCSTTCCEEEECCSHH-HHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBS
T ss_pred             CCCcCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhcc
Confidence            45789999999999986 99999999999999999976532            467889999999999873    24675


Q ss_pred             CC---ccCCCeEEEEeeccCC
Q 022295          226 GS---WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       226 ~~---~vk~gavVIDvg~~~~  243 (299)
                      .+   .+|+|+++||+|.-..
T Consensus       213 ~~~l~~mk~gailIN~aRG~~  233 (315)
T 3pp8_A          213 SELLDQLPDGAYVLNLARGVH  233 (315)
T ss_dssp             HHHHTTSCTTEEEEECSCGGG
T ss_pred             HHHHhhCCCCCEEEECCCChh
Confidence            54   4689999999996543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.11  E-value=2.2e-05  Score=72.95  Aligned_cols=133  Identities=18%  Similarity=0.209  Sum_probs=90.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------ChhhhccCCcEEEEecCC-C---CcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------DPESIVREADIVIAAAGQ-A---MMIKG  226 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------~l~~~~~~ADIVIsa~g~-p---~~i~~  226 (299)
                      .++.|+++.|||.|.+ |+++|..|...|++|+.++++..            ++.+.+++||+|+.+++. +   +++..
T Consensus       138 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~  216 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRI-GYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINE  216 (307)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCH
T ss_pred             cccCCceEEEEccCHH-HHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCH
Confidence            5799999999999886 99999999999999999986532            466788999999999883 3   45654


Q ss_pred             C---ccCCCeEEEEeeccCCCCCc-----cCCCceee---ccCCc--------hhhhhhhceeccCCCCccHHHHHHHHH
Q 022295          227 S---WIKPGAAVIDVGTNAVDDST-----KKSGYRLV---GDVDF--------HEACKVAGCVTPVPGGVGPMTVAMLLR  287 (299)
Q Consensus       227 ~---~vk~gavVIDvg~~~~~~~~-----~~~g~kl~---GDvdf--------~~~~~~a~~iTPVPGGVGp~T~a~L~~  287 (299)
                      +   .+|+|+++||+|....-+..     -.+| ++-   -||-.        +-+....-.+||-.+|.-.-+..-+.+
T Consensus       217 ~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~  295 (307)
T 1wwk_A          217 ERLKLMKKTAILINTSRGPVVDTNALVKALKEG-WIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGV  295 (307)
T ss_dssp             HHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT-SSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHH
T ss_pred             HHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC-CCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHH
Confidence            3   46999999999986543310     0001 222   24411        112223457899888887766655555


Q ss_pred             HHHHHHHHHh
Q 022295          288 NTLDGAKRVI  297 (299)
Q Consensus       288 n~v~a~~~~~  297 (299)
                      ..++..++++
T Consensus       296 ~~~~nl~~~~  305 (307)
T 1wwk_A          296 EVAEKVVKIL  305 (307)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.10  E-value=6.3e-06  Score=77.07  Aligned_cols=122  Identities=15%  Similarity=0.138  Sum_probs=83.8

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC-CC-------------CChhhhccCCcEEEEecCC-C---CcC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS-HT-------------TDPESIVREADIVIAAAGQ-A---MMI  224 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~-~t-------------~~l~~~~~~ADIVIsa~g~-p---~~i  224 (299)
                      .++.|+++.|||.|.+ |+.+|..|...|++|+++++ +.             .++.+.+++||+|+.+++. |   +++
T Consensus       142 ~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i  220 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSI-GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF  220 (320)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhc
Confidence            4789999999999886 99999999999999999987 43             1567888999999999883 2   356


Q ss_pred             CC---CccCCCeEEEEeeccCCCCCc-----cCCCceeec---cCC-------chhhhhhhceeccCCCCccHHHHHHHH
Q 022295          225 KG---SWIKPGAAVIDVGTNAVDDST-----KKSGYRLVG---DVD-------FHEACKVAGCVTPVPGGVGPMTVAMLL  286 (299)
Q Consensus       225 ~~---~~vk~gavVIDvg~~~~~~~~-----~~~g~kl~G---Dvd-------f~~~~~~a~~iTPVPGGVGp~T~a~L~  286 (299)
                      ..   +.+|+|+++||+|....-+..     -.+| ++.|   ||-       -+-+....-.+||-.+|.-.-+..-+.
T Consensus       221 ~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g-~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~  299 (320)
T 1gdh_A          221 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG-RLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMA  299 (320)
T ss_dssp             SHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT-SEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHH
T ss_pred             CHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC-CCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHH
Confidence            54   557999999999976432210     0001 2332   441       011222345789988887665543333

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.10  E-value=3.3e-06  Score=78.20  Aligned_cols=79  Identities=19%  Similarity=0.284  Sum_probs=65.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------CChhhhccCCcEEEEecCC-C---CcCCC---
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------TDPESIVREADIVIAAAGQ-A---MMIKG---  226 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------~~l~~~~~~ADIVIsa~g~-p---~~i~~---  226 (299)
                      .++.||++.|||.|.+ |+++|..|...|++|+.++++.         .++.+.+++||+|+.+++. |   +++..   
T Consensus       118 ~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  196 (290)
T 3gvx_A          118 TLLYGKALGILGYGGI-GRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLL  196 (290)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHH
T ss_pred             eeeecchheeeccCch-hHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHH
Confidence            3689999999999986 9999999999999999998653         3678899999999999883 3   35654   


Q ss_pred             CccCCCeEEEEeeccC
Q 022295          227 SWIKPGAAVIDVGTNA  242 (299)
Q Consensus       227 ~~vk~gavVIDvg~~~  242 (299)
                      +.+|+|+++||+|.-.
T Consensus       197 ~~mk~gailIN~aRG~  212 (290)
T 3gvx_A          197 ANARKNLTIVNVARAD  212 (290)
T ss_dssp             TTCCTTCEEEECSCGG
T ss_pred             hhhhcCceEEEeehhc
Confidence            4469999999999644

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.10  E-value=3.6e-06  Score=79.74  Aligned_cols=81  Identities=22%  Similarity=0.253  Sum_probs=67.0

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------ChhhhccCCcEEEEecCC----CCcCCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------DPESIVREADIVIAAAGQ----AMMIKGS  227 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------~l~~~~~~ADIVIsa~g~----p~~i~~~  227 (299)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++..          ++.+.+++||+|+.+++.    .+++..+
T Consensus       143 ~~~l~gktvgIiGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~  221 (343)
T 2yq5_A          143 SNEIYNLTVGLIGVGHI-GSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEK  221 (343)
T ss_dssp             BCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHH
T ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHH
Confidence            34789999999999986 99999999999999999986532          577889999999999883    3467655


Q ss_pred             c---cCCCeEEEEeeccCC
Q 022295          228 W---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       228 ~---vk~gavVIDvg~~~~  243 (299)
                      .   +|+|+++||+|.-..
T Consensus       222 ~l~~mk~gailIN~aRg~~  240 (343)
T 2yq5_A          222 QLKEMKKSAYLINCARGEL  240 (343)
T ss_dssp             HHHHSCTTCEEEECSCGGG
T ss_pred             HHhhCCCCcEEEECCCChh
Confidence            4   599999999996543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.09  E-value=3.6e-06  Score=79.77  Aligned_cols=154  Identities=18%  Similarity=0.222  Sum_probs=96.8

Q ss_pred             HHHHHcCC-ceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEE-eCCCCCCCCHHHHHccCCccccCCC-C----Ccccc
Q 022295           62 KACAEVGI-KSFDIDLPEQVSEAELISKVHELNVMPDVHGILV-QLPLPKHINEEKVLGEISLEKDVDG-F----HPLNI  134 (299)
Q Consensus        62 k~~~~~Gi-~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlv-q~Plp~~i~~~~i~~~i~p~KDVDg-~----~~~n~  134 (299)
                      ..+.+.|. .+.|.++.  ++ .++++.+.+.    ++.|+.+ +.|++.+.     +..+++.-.+-| +    ...|+
T Consensus        81 ~~~~~~g~~~~~y~~~~--~~-~~l~~~l~~~----gi~~~~~etvp~k~~~-----~~~l~~~s~~Ag~~a~~~gA~nt  148 (361)
T 1pjc_A           81 YDLMQKDQLLFTYLHLA--AA-RELTEQLMRV----GLTAIAYETVELPNRS-----LPLLTPMSIIAGRLSVQFGARFL  148 (361)
T ss_dssp             GGGCCTTCEEEECCCGG--GC-HHHHHHHHHH----TCEEEEGGGCCCTTSC-----CTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhcCCCEEEEEeccc--cC-HHHHHHHHHc----CCeEEEEeeeEcccCC-----ccccCcchHHHHHHHHHHHHHHH
Confidence            34455675 67766665  33 3577777665    5889988 88876432     122222111111 0    12333


Q ss_pred             cccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------
Q 022295          135 GKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------  202 (299)
Q Consensus       135 g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------  202 (299)
                      .+...|   .+|.          +... ..+++++|+|+|+|+ +|+.++..|...|++|++++++..            
T Consensus       149 ~~~~~g---~G~~----------l~~l-~~l~~~~VlViGaGg-vG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~  213 (361)
T 1pjc_A          149 ERQQGG---RGVL----------LGGV-PGVKPGKVVILGGGV-VGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR  213 (361)
T ss_dssp             SGGGTS---CCCC----------TTCB-TTBCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG
T ss_pred             hhccCC---Ccee----------ccCC-CCCCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCce
Confidence            333222   1222          0000 136789999999977 599999999999999999986521            


Q ss_pred             ---------ChhhhccCCcEEEEecCCCC-----cCC---CCccCCCeEEEEeeccC
Q 022295          203 ---------DPESIVREADIVIAAAGQAM-----MIK---GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       203 ---------~l~~~~~~ADIVIsa~g~p~-----~i~---~~~vk~gavVIDvg~~~  242 (299)
                               ++.+.++.+|+||+++|.|.     ++.   -+.+++|.+++|+++++
T Consensus       214 ~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          214 VELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             SEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             eEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCC
Confidence                     23355678999999998654     233   24578999999999875

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.08  E-value=4.5e-06  Score=78.45  Aligned_cols=80  Identities=18%  Similarity=0.240  Sum_probs=65.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------ChhhhccCCcEEEEecCC-C---CcCCCC-
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------DPESIVREADIVIAAAGQ-A---MMIKGS-  227 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------~l~~~~~~ADIVIsa~g~-p---~~i~~~-  227 (299)
                      .++.||++.|||.|.+ |+.+|..|...|++|++++++..          ++.+.+++||+|+.+++. +   ++++.+ 
T Consensus       142 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~  220 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRI-GRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDF  220 (331)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHH
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHH
Confidence            4689999999999886 99999999999999999876532          467889999999998874 2   456543 


Q ss_pred             --ccCCCeEEEEeeccCC
Q 022295          228 --WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       228 --~vk~gavVIDvg~~~~  243 (299)
                        .+|+|+++||+|....
T Consensus       221 l~~mk~ga~lin~srg~~  238 (331)
T 1xdw_A          221 LKKMKDGAILVNCARGQL  238 (331)
T ss_dssp             HHTSCTTEEEEECSCGGG
T ss_pred             HhhCCCCcEEEECCCccc
Confidence              4699999999996543

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.08  E-value=1.5e-06  Score=83.82  Aligned_cols=118  Identities=14%  Similarity=0.145  Sum_probs=82.7

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCCC---CChhhhccCCcEEEEecC----CCCcCCCCcc----CC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSHT---TDPESIVREADIVIAAAG----QAMMIKGSWI----KP  231 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~t---~~l~~~~~~ADIVIsa~g----~p~~i~~~~v----k~  231 (299)
                      ...+|+|||++|.||+.++.++...||   .|++++.+.   ....+.+++|||||+++-    .|.+|+.+|+    ||
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~~~~i~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~  292 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPFDEIPQADIFINCIYLSKPIAPFTNMEKLNNPNRR  292 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSCCTHHHHSSEEEECCCCCSSCCCSCCHHHHCCTTCC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCchhhHhhCCEEEECcCcCCCCCcccCHHHHhcCcCC
Confidence            467899999867789999999999998   899997542   111256789999999886    4889999886    88


Q ss_pred             CeEEEEeeccCCCCCccCCCceeeccCCch-------h-hhh---------hhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          232 GAAVIDVGTNAVDDSTKKSGYRLVGDVDFH-------E-ACK---------VAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       232 gavVIDvg~~~~~~~~~~~g~kl~GDvdf~-------~-~~~---------~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      |++|+|+.+++-  +       -++..||.       + +..         ..-+++=.||-+ |-|.+.++.|.+.-+
T Consensus       293 gsVIVDVA~D~G--G-------~~et~~f~~~~Tt~~~P~~~~~g~~~~~V~~~~v~nlP~~l-PrtAS~~~sn~llp~  361 (394)
T 2qrj_A          293 LRTVVDVSADTT--N-------PHNPIPIYTVATVFNKPTVLVPTTAGPKLSVISIDHLPSLL-PREASEFFSHDLLPS  361 (394)
T ss_dssp             CCEEEETTCCTT--C-------TTCSSCSCCCCCBTTBCCEEECCSSSSCEEEECCTTGGGGS-HHHHHHHHHHHHHHH
T ss_pred             CeEEEEEecCCC--C-------CcCcccccccCCccCCCEEEECCCCCCCEEEEEeCChhhhh-HHHHHHHHHHHHHHH
Confidence            999999988652  0       11111111       0 000         012344468888 999988888866543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.08  E-value=3e-05  Score=77.23  Aligned_cols=133  Identities=20%  Similarity=0.220  Sum_probs=89.1

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCCC----CcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQA----MMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~p----~~i~  225 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       137 ~~~l~g~~vgIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~  215 (529)
T 1ygy_A          137 GTEIFGKTVGVVGLGRI-GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  215 (529)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             ccccCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhC
Confidence            46799999999999886 9999999999999999997642            14667889999999999853    3565


Q ss_pred             C---CccCCCeEEEEeeccCCCCCcc-----CCCceeec---cC-------CchhhhhhhceeccCCCCccHHHHHHHHH
Q 022295          226 G---SWIKPGAAVIDVGTNAVDDSTK-----KSGYRLVG---DV-------DFHEACKVAGCVTPVPGGVGPMTVAMLLR  287 (299)
Q Consensus       226 ~---~~vk~gavVIDvg~~~~~~~~~-----~~g~kl~G---Dv-------df~~~~~~a~~iTPVPGGVGp~T~a~L~~  287 (299)
                      .   ..+|+|+++||++.-..-+...     ++| ++.|   ||       |.+-+....-.+||-+||.-+-+..-+..
T Consensus       216 ~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g-~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~  294 (529)
T 1ygy_A          216 KEALAKTKPGVIIVNAARGGLVDEAALADAITGG-HVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGT  294 (529)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS-SEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcC-CccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHH
Confidence            4   4579999999999643322100     011 2221   33       10112222346899999888777665544


Q ss_pred             HHHHHHHHH
Q 022295          288 NTLDGAKRV  296 (299)
Q Consensus       288 n~v~a~~~~  296 (299)
                      ..++....+
T Consensus       295 ~~~~~l~~~  303 (529)
T 1ygy_A          295 DVAESVRLA  303 (529)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.08  E-value=6.7e-06  Score=76.40  Aligned_cols=79  Identities=25%  Similarity=0.337  Sum_probs=65.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------CChhhhccCCcEEEEecCCC----CcCCC---Cc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------TDPESIVREADIVIAAAGQA----MMIKG---SW  228 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------~~l~~~~~~ADIVIsa~g~p----~~i~~---~~  228 (299)
                      ++.||++.|||.|.+ |+.+|..|...|++|+.++++.        .++.+.+++||+|+.+++..    ++++.   ..
T Consensus       121 ~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~  199 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEI-GTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  199 (303)
T ss_dssp             CCTTCEEEEESCSTH-HHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             CCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhh
Confidence            699999999999996 9999999999999999987643        35778899999999998742    35653   44


Q ss_pred             cCCCeEEEEeeccCC
Q 022295          229 IKPGAAVIDVGTNAV  243 (299)
Q Consensus       229 vk~gavVIDvg~~~~  243 (299)
                      +|+|+++||+|.-..
T Consensus       200 mk~gailin~srg~~  214 (303)
T 1qp8_A          200 MAEDAVFVNVGRAEV  214 (303)
T ss_dssp             SCTTCEEEECSCGGG
T ss_pred             CCCCCEEEECCCCcc
Confidence            689999999997644

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.08  E-value=5e-06  Score=78.65  Aligned_cols=131  Identities=24%  Similarity=0.330  Sum_probs=83.2

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------CChhhhccCCcEEEEecCC-C---CcCCCCc
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------TDPESIVREADIVIAAAGQ-A---MMIKGSW  228 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------~~l~~~~~~ADIVIsa~g~-p---~~i~~~~  228 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.         .++.+.+++||+|+.+++. |   +++..+.
T Consensus       166 ~~~l~gktiGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~  244 (340)
T 4dgs_A          166 GHSPKGKRIGVLGLGQI-GRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASL  244 (340)
T ss_dssp             CCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHH
T ss_pred             cccccCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHH
Confidence            45899999999999986 9999999999999999987653         3678899999999999883 2   3565544


Q ss_pred             ---cCCCeEEEEeeccCCCCCc-----cCCCceeec---cCCchh-------hhh-hhceeccCCCCccHHHHHHHHHHH
Q 022295          229 ---IKPGAAVIDVGTNAVDDST-----KKSGYRLVG---DVDFHE-------ACK-VAGCVTPVPGGVGPMTVAMLLRNT  289 (299)
Q Consensus       229 ---vk~gavVIDvg~~~~~~~~-----~~~g~kl~G---Dvdf~~-------~~~-~a~~iTPVPGGVGp~T~a~L~~n~  289 (299)
                         +|+|+++||++.-..-+..     -.+| ++.|   || |+.       ..+ ..-.+||=-||.-.-+..-+...+
T Consensus       245 l~~mk~gailIN~aRG~vvde~aL~~aL~~g-~i~gA~LDV-f~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~  322 (340)
T 4dgs_A          245 LQALGPEGIVVNVARGNVVDEDALIEALKSG-TIAGAGLDV-FVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLV  322 (340)
T ss_dssp             HHHTTTTCEEEECSCC--------------C-CSSEEEESC-CSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEECCCCcccCHHHHHHHHHcC-CceEEEeCC-cCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHH
Confidence               6899999999865442210     0012 3322   65 221       111 123688877877665554444444


Q ss_pred             HHHHHH
Q 022295          290 LDGAKR  295 (299)
Q Consensus       290 v~a~~~  295 (299)
                      ++...+
T Consensus       323 ~~nl~~  328 (340)
T 4dgs_A          323 LANLAA  328 (340)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.08  E-value=1.3e-05  Score=74.73  Aligned_cols=74  Identities=20%  Similarity=0.315  Sum_probs=61.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhh-CC-CeEEEEcCCCC-------------------ChhhhccCCcEEEEecCCCC-c
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLK-AD-ATVTIVHSHTT-------------------DPESIVREADIVIAAAGQAM-M  223 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~-~g-atVtv~~~~t~-------------------~l~~~~~~ADIVIsa~g~p~-~  223 (299)
                      ..+++.|||.|.. |+..+..|.. .+ .+|++++++ +                   ++++.+++|||||++|+.+. +
T Consensus       120 ~~~~v~iIGaG~~-a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~pv  197 (313)
T 3hdj_A          120 RSSVLGLFGAGTQ-GAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTTPL  197 (313)
T ss_dssp             TCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSSCS
T ss_pred             CCcEEEEECccHH-HHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCCcc
Confidence            5789999999886 9999988875 34 589999876 2                   34566788999999999755 5


Q ss_pred             CCCCccCCCeEEEEeecc
Q 022295          224 IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       224 i~~~~vk~gavVIDvg~~  241 (299)
                      ++.+|++||++|+|+|..
T Consensus       198 l~~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          198 FAGQALRAGAFVGAIGSS  215 (313)
T ss_dssp             SCGGGCCTTCEEEECCCS
T ss_pred             cCHHHcCCCcEEEECCCC
Confidence            789999999999999985

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.07  E-value=5.7e-06  Score=77.14  Aligned_cols=132  Identities=16%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------ChhhhccCCcEEEEecCC-C---CcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------DPESIVREADIVIAAAGQ-A---MMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------~l~~~~~~ADIVIsa~g~-p---~~i~  225 (299)
                      +.++.|+++.|||.|.+ |+++|..|...|++|++++++..            ++.+.+++||+|+.+++. +   +++.
T Consensus       137 ~~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~  215 (313)
T 2ekl_A          137 GLELAGKTIGIVGFGRI-GTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIID  215 (313)
T ss_dssp             CCCCTTCEEEEESCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBC
T ss_pred             CCCCCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhC
Confidence            46899999999999886 99999999999999999976532            466788999999999883 2   4565


Q ss_pred             CC---ccCCCeEEEEeeccCCCCCc-----cCCCceeec---cC-------Cc---hhhhhhhceeccCCCCccHHHHHH
Q 022295          226 GS---WIKPGAAVIDVGTNAVDDST-----KKSGYRLVG---DV-------DF---HEACKVAGCVTPVPGGVGPMTVAM  284 (299)
Q Consensus       226 ~~---~vk~gavVIDvg~~~~~~~~-----~~~g~kl~G---Dv-------df---~~~~~~a~~iTPVPGGVGp~T~a~  284 (299)
                      .+   .+|+|+++||++.....+..     -.+| ++.|   ||       +.   +-.....-.+||-.+|.-.-+..-
T Consensus       216 ~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~  294 (313)
T 2ekl_A          216 YPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKG-KVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR  294 (313)
T ss_dssp             HHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTT-CEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC-CCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHH
Confidence            43   46999999999986543310     0011 3322   44       11   111223357899888877665544


Q ss_pred             HHHHHHHHHHH
Q 022295          285 LLRNTLDGAKR  295 (299)
Q Consensus       285 L~~n~v~a~~~  295 (299)
                      +....++..++
T Consensus       295 ~~~~~~~n~~~  305 (313)
T 2ekl_A          295 VAEMTTQNLLN  305 (313)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444433

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.05  E-value=5.2e-05  Score=72.34  Aligned_cols=133  Identities=17%  Similarity=0.208  Sum_probs=88.7

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCC-C---CcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQ-A---MMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~-p---~~i~  225 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.            .++.+.+++||+|+.+++. |   +++.
T Consensus       171 ~~~l~gktvGIIGlG~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~  249 (365)
T 4hy3_A          171 ARLIAGSEIGIVGFGDL-GKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLG  249 (365)
T ss_dssp             CCCSSSSEEEEECCSHH-HHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCC
T ss_pred             ccccCCCEEEEecCCcc-cHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcC
Confidence            35789999999999986 9999999999999999987642            2577889999999998873 2   3676


Q ss_pred             CCc---cCCCeEEEEeeccCCCCCc-----cCCCcee--eccCCchh---------hhhhhceeccCCCCccHHHHHHHH
Q 022295          226 GSW---IKPGAAVIDVGTNAVDDST-----KKSGYRL--VGDVDFHE---------ACKVAGCVTPVPGGVGPMTVAMLL  286 (299)
Q Consensus       226 ~~~---vk~gavVIDvg~~~~~~~~-----~~~g~kl--~GDvdf~~---------~~~~a~~iTPVPGGVGp~T~a~L~  286 (299)
                      .+.   +|+|+++||++.-..-+..     -.+| ++  .=|| |+.         ..-..-.+||=-||.-.-+...+.
T Consensus       250 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~i~aaLDV-~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~  327 (365)
T 4hy3_A          250 AEAFSSMRRGAAFILLSRADVVDFDALMAAVSSG-HIVAASDV-YPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMG  327 (365)
T ss_dssp             HHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTT-SSEEEESC-CSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcC-CceEEeeC-CCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHH
Confidence            544   5999999999944321110     0000 11  1122 110         111134688988888776666666


Q ss_pred             HHHHHHHHHHh
Q 022295          287 RNTLDGAKRVI  297 (299)
Q Consensus       287 ~n~v~a~~~~~  297 (299)
                      ..+++..++|+
T Consensus       328 ~~~~~ni~~~~  338 (365)
T 4hy3_A          328 DMVLEDMDLMD  338 (365)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66655555543

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.04  E-value=9.8e-06  Score=77.19  Aligned_cols=81  Identities=26%  Similarity=0.333  Sum_probs=67.2

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCC--------------CChhhhccCCcEEEEecCCC----C
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHT--------------TDPESIVREADIVIAAAGQA----M  222 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p----~  222 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++ |+.++++.              .++.+.+++||+|+.+++..    +
T Consensus       159 ~~~l~g~tvgIIG~G~I-G~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~  237 (364)
T 2j6i_A          159 AYDIEGKTIATIGAGRI-GYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKG  237 (364)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTT
T ss_pred             cccCCCCEEEEECcCHH-HHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHH
Confidence            56899999999999886 99999999999997 99987542              25778899999999998853    4


Q ss_pred             cCCC---CccCCCeEEEEeeccCC
Q 022295          223 MIKG---SWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       223 ~i~~---~~vk~gavVIDvg~~~~  243 (299)
                      +++.   ..+|+|+++||++....
T Consensus       238 li~~~~l~~mk~ga~lIn~arG~~  261 (364)
T 2j6i_A          238 LINKELLSKFKKGAWLVNTARGAI  261 (364)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCGGG
T ss_pred             HhCHHHHhhCCCCCEEEECCCCch
Confidence            6654   45799999999997654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.03  E-value=3e-05  Score=73.59  Aligned_cols=134  Identities=16%  Similarity=0.159  Sum_probs=90.7

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcEEEEecCC-C---CcC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADIVIAAAGQ-A---MMI  224 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADIVIsa~g~-p---~~i  224 (299)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++             ..++.+.+++||+|+.+++. +   +++
T Consensus       155 ~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li  233 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKI-GQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSII  233 (352)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CccCCCCEEEEEeECHH-HHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhh
Confidence            45789999999999986 999999999999999998753             13788899999999998873 2   356


Q ss_pred             CCC---ccCCCeEEEEeeccCCCCCcc-----CCCceeec---cCCc--------hhhhhhhceeccCCCCccHHHHHHH
Q 022295          225 KGS---WIKPGAAVIDVGTNAVDDSTK-----KSGYRLVG---DVDF--------HEACKVAGCVTPVPGGVGPMTVAML  285 (299)
Q Consensus       225 ~~~---~vk~gavVIDvg~~~~~~~~~-----~~g~kl~G---Dvdf--------~~~~~~a~~iTPVPGGVGp~T~a~L  285 (299)
                      ..+   .+|+|+++||+|.-..-+...     .+| ++.|   ||-.        .-..-..-.+||=-||.-.-+...+
T Consensus       234 ~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g-~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~  312 (352)
T 3gg9_A          234 TVADLTRMKPTALFVNTSRAELVEENGMVTALNRG-RPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMY  312 (352)
T ss_dssp             CHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHT-SSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHH
T ss_pred             CHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhC-CccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHH
Confidence            554   469999999999644322100     001 2222   3311        1111123468888888877776666


Q ss_pred             HHHHHHHHHHHh
Q 022295          286 LRNTLDGAKRVI  297 (299)
Q Consensus       286 ~~n~v~a~~~~~  297 (299)
                      ...+++..++++
T Consensus       313 ~~~~~~ni~~~~  324 (352)
T 3gg9_A          313 FGIAFQNILDIL  324 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666655555443

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.02  E-value=8e-06  Score=76.82  Aligned_cols=81  Identities=21%  Similarity=0.299  Sum_probs=66.8

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------ChhhhccCCcEEEEecCCC----CcCCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------DPESIVREADIVIAAAGQA----MMIKGS  227 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------~l~~~~~~ADIVIsa~g~p----~~i~~~  227 (299)
                      +.++.|+++.|||.|.+ |+.+|..|...|++|+.++++..          ++.+.+++||+|+.+++..    +++..+
T Consensus       140 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~  218 (333)
T 1dxy_A          140 GKELGQQTVGVMGTGHI-GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEA  218 (333)
T ss_dssp             CCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHH
T ss_pred             ccCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHH
Confidence            45799999999999986 99999999999999999876532          5678899999999998842    456543


Q ss_pred             ---ccCCCeEEEEeeccCC
Q 022295          228 ---WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       228 ---~vk~gavVIDvg~~~~  243 (299)
                         .+|+|+++||+|....
T Consensus       219 ~l~~mk~ga~lIn~srg~~  237 (333)
T 1dxy_A          219 AFNLMKPGAIVINTARPNL  237 (333)
T ss_dssp             HHHHSCTTEEEEECSCTTS
T ss_pred             HHhhCCCCcEEEECCCCcc
Confidence               4699999999998654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.01  E-value=1.2e-05  Score=76.69  Aligned_cols=78  Identities=26%  Similarity=0.426  Sum_probs=62.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccCCcEEEEecCCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g~p~  222 (299)
                      .+.|++|+|+|.|. +|+.++..+...|++|++++++..                     ++.+.++++|+||.+++.|.
T Consensus       165 ~l~g~~V~ViG~G~-iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          165 GVEPADVVVIGAGT-AGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TBCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CCCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence            47899999999976 599999999999999999976421                     23456778999999997653


Q ss_pred             -----cCCC---CccCCCeEEEEeeccC
Q 022295          223 -----MIKG---SWIKPGAAVIDVGTNA  242 (299)
Q Consensus       223 -----~i~~---~~vk~gavVIDvg~~~  242 (299)
                           ++..   +.+++|+++||+|+.+
T Consensus       244 ~~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          244 AKAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             SCCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             CCCcceecHHHHhcCCCCcEEEEEecCC
Confidence                 4444   3468999999999754

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.99  E-value=5.7e-05  Score=70.86  Aligned_cols=132  Identities=21%  Similarity=0.257  Sum_probs=88.2

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCCC----CcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQA----MMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~p----~~i~  225 (299)
                      +.++.|+++.|||.|.+ |+.+|..|...|++|++++++.            .++.+.+++||+||.+++..    +++.
T Consensus       145 ~~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~  223 (334)
T 2dbq_A          145 GYDVYGKTIGIIGLGRI-GQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLIN  223 (334)
T ss_dssp             CCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             ccCCCCCEEEEEccCHH-HHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhC
Confidence            35799999999999886 9999999999999999987653            24667789999999999853    3555


Q ss_pred             C---CccCCCeEEEEeeccCCCCCc-----cCCCceeec---cCCch-------hh-hhhhceeccCCCCccHHHHHHHH
Q 022295          226 G---SWIKPGAAVIDVGTNAVDDST-----KKSGYRLVG---DVDFH-------EA-CKVAGCVTPVPGGVGPMTVAMLL  286 (299)
Q Consensus       226 ~---~~vk~gavVIDvg~~~~~~~~-----~~~g~kl~G---Dvdf~-------~~-~~~a~~iTPVPGGVGp~T~a~L~  286 (299)
                      .   ..+++|+++||++.-..-+..     -..| ++.|   || |+       .. ....-.+||-.||.-.-+..-+.
T Consensus       224 ~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~-~i~ga~lDv-~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~  301 (334)
T 2dbq_A          224 EERLKLMKKTAILINIARGKVVDTNALVKALKEG-WIAGAGLDV-FEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMA  301 (334)
T ss_dssp             HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT-SSSEEEESC-CSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC-CeeEEEecC-CCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHH
Confidence            3   356899999999865432210     0001 2322   44 21       11 11234678888887766555555


Q ss_pred             HHHHHHHHHH
Q 022295          287 RNTLDGAKRV  296 (299)
Q Consensus       287 ~n~v~a~~~~  296 (299)
                      ..+++..+++
T Consensus       302 ~~~~~n~~~~  311 (334)
T 2dbq_A          302 ELVAKNLIAF  311 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555444443

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.97  E-value=8.6e-06  Score=76.56  Aligned_cols=80  Identities=16%  Similarity=0.267  Sum_probs=65.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------ChhhhccCCcEEEEecCC-C---CcCCC-
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------DPESIVREADIVIAAAGQ-A---MMIKG-  226 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------~l~~~~~~ADIVIsa~g~-p---~~i~~-  226 (299)
                      .++.|+++.|||.|.+ |+.+|..|...|++|+.++++..           ++.+.+++||+|+.+++. |   +++.. 
T Consensus       142 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~  220 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHI-GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDE  220 (333)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHH
T ss_pred             ccCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHH
Confidence            4789999999999886 99999999999999999876532           677888999999999883 2   35654 


Q ss_pred             --CccCCCeEEEEeeccCC
Q 022295          227 --SWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       227 --~~vk~gavVIDvg~~~~  243 (299)
                        +.+|+|+++||+|....
T Consensus       221 ~l~~mk~ga~lIn~arg~~  239 (333)
T 1j4a_A          221 SIAKMKQDVVIVNVSRGPL  239 (333)
T ss_dssp             HHHHSCTTEEEEECSCGGG
T ss_pred             HHhhCCCCcEEEECCCCcc
Confidence              34699999999997644

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.96  E-value=1.5e-05  Score=75.52  Aligned_cols=132  Identities=18%  Similarity=0.237  Sum_probs=88.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCC-C---CcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQ-A---MMIK  225 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~-p---~~i~  225 (299)
                      .++.|+++.|||.|.+ |+++|..|...|++|+.++++.             .++.+.+++||+|+.+++. +   +++.
T Consensus       164 ~~l~g~tvGIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  242 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRV-GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN  242 (347)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS
T ss_pred             cCCCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH
Confidence            4789999999999986 9999999999999999987642             2567889999999998874 2   3565


Q ss_pred             C---CccCCCeEEEEeeccCCCCCcc-----CCCceeec---cCCchh--------hh-hhhceeccCCCCccHHHHHHH
Q 022295          226 G---SWIKPGAAVIDVGTNAVDDSTK-----KSGYRLVG---DVDFHE--------AC-KVAGCVTPVPGGVGPMTVAML  285 (299)
Q Consensus       226 ~---~~vk~gavVIDvg~~~~~~~~~-----~~g~kl~G---Dvdf~~--------~~-~~a~~iTPVPGGVGp~T~a~L  285 (299)
                      .   ..+|+|+++||++.....+...     .+| ++.|   ||-..+        +. -..-.+||=-+|...-+..-+
T Consensus       243 ~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~  321 (347)
T 1mx3_A          243 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG-RIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM  321 (347)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT-SEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhC-CCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHH
Confidence            4   3468999999999875433100     001 2322   332100        11 113467887788776666555


Q ss_pred             HHHHHHHHHHH
Q 022295          286 LRNTLDGAKRV  296 (299)
Q Consensus       286 ~~n~v~a~~~~  296 (299)
                      .+..++..+++
T Consensus       322 ~~~~~~ni~~~  332 (347)
T 1mx3_A          322 REEAAREIRRA  332 (347)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555444

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.95  E-value=1.5e-05  Score=75.43  Aligned_cols=133  Identities=21%  Similarity=0.239  Sum_probs=89.0

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHh-hCCCeEEEEcCCCC--------------ChhhhccCCcEEEEecCC-C---C
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLL-KADATVTIVHSHTT--------------DPESIVREADIVIAAAGQ-A---M  222 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~-~~gatVtv~~~~t~--------------~l~~~~~~ADIVIsa~g~-p---~  222 (299)
                      +.++.||++.|||.|.+ |+.+|..|. ..|++|+.++++..              ++.+.+++||+|+.+++. +   +
T Consensus       158 ~~~l~g~~vgIIG~G~I-G~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~  236 (348)
T 2w2k_A          158 AHNPRGHVLGAVGLGAI-QKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHH  236 (348)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTT
T ss_pred             CcCCCCCEEEEEEECHH-HHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHH
Confidence            56899999999999886 999999999 99999999986532              566778999999999884 2   3


Q ss_pred             cCCC---CccCCCeEEEEeeccCCCCCc-----cCCCceeec---cCCchh------hhh-hhceeccCCCCccHHHHHH
Q 022295          223 MIKG---SWIKPGAAVIDVGTNAVDDST-----KKSGYRLVG---DVDFHE------ACK-VAGCVTPVPGGVGPMTVAM  284 (299)
Q Consensus       223 ~i~~---~~vk~gavVIDvg~~~~~~~~-----~~~g~kl~G---Dvdf~~------~~~-~a~~iTPVPGGVGp~T~a~  284 (299)
                      ++..   ..+++|+++||++.....+..     -..| ++.|   ||--.+      ..+ ..-.+||-.||.-.-+..-
T Consensus       237 li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~-~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~  315 (348)
T 2w2k_A          237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG-KLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHE  315 (348)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT-SEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHHH
T ss_pred             HhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhC-CceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHHH
Confidence            5654   346899999999876432210     0012 3433   552111      111 2346788888877666555


Q ss_pred             HHHHHHHHHHHH
Q 022295          285 LLRNTLDGAKRV  296 (299)
Q Consensus       285 L~~n~v~a~~~~  296 (299)
                      +...+++..+++
T Consensus       316 ~~~~~~~ni~~~  327 (348)
T 2w2k_A          316 FERLTMTNIDRF  327 (348)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            544444444443

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.95  E-value=1.2e-05  Score=75.65  Aligned_cols=81  Identities=20%  Similarity=0.331  Sum_probs=66.2

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------CChhhhccCCcEEEEecCC-C---CcCCCC-
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------TDPESIVREADIVIAAAGQ-A---MMIKGS-  227 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------~~l~~~~~~ADIVIsa~g~-p---~~i~~~-  227 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|++++++.         .++.+.+++||+|+.+++. +   +++..+ 
T Consensus       159 ~~~l~g~~vgIIG~G~i-G~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~  237 (333)
T 3ba1_A          159 TTKFSGKRVGIIGLGRI-GLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREV  237 (333)
T ss_dssp             CCCCTTCCEEEECCSHH-HHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHH
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHH
Confidence            45799999999999886 9999999999999999997653         3577889999999999884 2   356543 


Q ss_pred             --ccCCCeEEEEeeccCC
Q 022295          228 --WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       228 --~vk~gavVIDvg~~~~  243 (299)
                        .+++|+++||++.-..
T Consensus       238 l~~mk~gailIn~srG~~  255 (333)
T 3ba1_A          238 IDALGPKGVLINIGRGPH  255 (333)
T ss_dssp             HHHHCTTCEEEECSCGGG
T ss_pred             HhcCCCCCEEEECCCCch
Confidence              3589999999987544

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.93  E-value=3.4e-05  Score=71.55  Aligned_cols=77  Identities=19%  Similarity=0.339  Sum_probs=62.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhC-CC-eEEEEcCCC-----------------CChhhhccCCcEEEEecCCCC-c
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKA-DA-TVTIVHSHT-----------------TDPESIVREADIVIAAAGQAM-M  223 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~-ga-tVtv~~~~t-----------------~~l~~~~~~ADIVIsa~g~p~-~  223 (299)
                      ...++++.|||.|.+ |++++..|... +. .|++++++.                 .++.+.+++||+||++++... +
T Consensus       132 ~~~~~~igiIG~G~~-g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~~~v  210 (312)
T 2i99_A          132 PPSSEVLCILGAGVQ-AYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLATEPI  210 (312)
T ss_dssp             CTTCCEEEEECCSHH-HHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCSSCC
T ss_pred             CCCCcEEEEECCcHH-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCCCcc
Confidence            567899999999886 99999988765 76 899998641                 356678899999999998543 4


Q ss_pred             CCCCccCCCeEEEEeecc
Q 022295          224 IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       224 i~~~~vk~gavVIDvg~~  241 (299)
                      +..+|+++|.+|+|+|..
T Consensus       211 ~~~~~l~~g~~vi~~g~~  228 (312)
T 2i99_A          211 LFGEWVKPGAHINAVGAS  228 (312)
T ss_dssp             BCGGGSCTTCEEEECCCC
T ss_pred             cCHHHcCCCcEEEeCCCC
Confidence            666899999999999754

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=97.93  E-value=1.7e-05  Score=76.91  Aligned_cols=81  Identities=22%  Similarity=0.299  Sum_probs=67.7

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------CChhhhccCCcEEEEecCC-C---CcCCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------TDPESIVREADIVIAAAGQ-A---MMIKGS  227 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------~~l~~~~~~ADIVIsa~g~-p---~~i~~~  227 (299)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.+++..          .++.+.+++||+|+..++. +   +++..+
T Consensus       151 ~~el~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~  229 (416)
T 3k5p_A          151 SREVRGKTLGIVGYGNI-GSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEA  229 (416)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHH
T ss_pred             CccCCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHH
Confidence            46799999999999986 9999999999999999998542          3678899999999999884 2   467655


Q ss_pred             c---cCCCeEEEEeeccCC
Q 022295          228 W---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       228 ~---vk~gavVIDvg~~~~  243 (299)
                      .   +|+|+++||++.-..
T Consensus       230 ~l~~mk~gailIN~aRG~v  248 (416)
T 3k5p_A          230 KLRKMKKGAFLINNARGSD  248 (416)
T ss_dssp             HHHHSCTTEEEEECSCTTS
T ss_pred             HHhhCCCCcEEEECCCChh
Confidence            4   599999999997654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.89  E-value=4.3e-05  Score=72.35  Aligned_cols=77  Identities=14%  Similarity=0.281  Sum_probs=61.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhh-CC-CeEEEEcCC---------------------CCChhhhccCCcEEEEecCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLK-AD-ATVTIVHSH---------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~-~g-atVtv~~~~---------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      ....+++.|||.|.. |+..+..|.. .+ .+|++++++                     ..++++.+++||+||++|+.
T Consensus       126 ~~~~~~v~iIGaG~~-a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps  204 (350)
T 1x7d_A          126 RPNARKMALIGNGAQ-SEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD  204 (350)
T ss_dssp             CTTCCEEEEECCSTT-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC
T ss_pred             cccCCeEEEECCcHH-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccC
Confidence            357899999999886 9998877643 44 589999864                     12456778899999999997


Q ss_pred             C---CcCCCCccCCCeEEEEeecc
Q 022295          221 A---MMIKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       221 p---~~i~~~~vk~gavVIDvg~~  241 (299)
                      +   .++..+|+++|++|+++|..
T Consensus       205 ~~~~pvl~~~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          205 KAYATIITPDMLEPGMHLNAVGGD  228 (350)
T ss_dssp             SSEEEEECGGGCCTTCEEEECSCC
T ss_pred             CCCCceecHHHcCCCCEEEECCCC
Confidence            5   25788999999999999964

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.88  E-value=2.8e-05  Score=72.79  Aligned_cols=79  Identities=11%  Similarity=0.191  Sum_probs=64.2

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------ChhhhccCCcEEEEecCCC----CcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------DPESIVREADIVIAAAGQA----MMIK  225 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------~l~~~~~~ADIVIsa~g~p----~~i~  225 (299)
                      .++.|+++.|||.|.+ |+++|..|...|++|++++++..             ++.+.+++||+||.+++..    +++.
T Consensus       151 ~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~  229 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRI-GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCN  229 (330)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBS
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhC
Confidence            5689999999999885 99999999999999999986432             4667789999999999843    3454


Q ss_pred             C---CccCCCeEEEEeeccC
Q 022295          226 G---SWIKPGAAVIDVGTNA  242 (299)
Q Consensus       226 ~---~~vk~gavVIDvg~~~  242 (299)
                      .   ..+++|+++||++.-.
T Consensus       230 ~~~~~~mk~gailIn~srg~  249 (330)
T 2gcg_A          230 KDFFQKMKETAVFINISRGD  249 (330)
T ss_dssp             HHHHHHSCTTCEEEECSCGG
T ss_pred             HHHHhcCCCCcEEEECCCCc
Confidence            3   3468999999998754

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.88  E-value=2.4e-05  Score=75.35  Aligned_cols=132  Identities=23%  Similarity=0.245  Sum_probs=87.8

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCC-C---Cc
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQ-A---MM  223 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~-p---~~  223 (299)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.              .++.+.+++||+|+.+++. |   ++
T Consensus       186 ~~~l~gktvGIIGlG~I-G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  264 (393)
T 2nac_A          186 AYDLEAMHVGTVAAGRI-GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHM  264 (393)
T ss_dssp             CCCCTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             CccCCCCEEEEEeECHH-HHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHH
Confidence            45799999999999996 9999999999999999987642              3577889999999999883 2   45


Q ss_pred             CCC---CccCCCeEEEEeeccCCCCCc-----cCCCceee---ccCCchh--------hhhhhceeccCCCCccHHHHHH
Q 022295          224 IKG---SWIKPGAAVIDVGTNAVDDST-----KKSGYRLV---GDVDFHE--------ACKVAGCVTPVPGGVGPMTVAM  284 (299)
Q Consensus       224 i~~---~~vk~gavVIDvg~~~~~~~~-----~~~g~kl~---GDvdf~~--------~~~~a~~iTPVPGGVGp~T~a~  284 (299)
                      +..   ..+|+|+++||++.-..-+..     -.+| ++-   -||-..+        .....-.+||=.||.-.-+..-
T Consensus       265 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~  343 (393)
T 2nac_A          265 INDETLKLFKRGAYIVNTARGKLCDRDAVARALESG-RLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQAR  343 (393)
T ss_dssp             BSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT-SEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHH
T ss_pred             hhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcC-CeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHH
Confidence            654   456899999999976432210     0011 233   3552211        1111346888878776655544


Q ss_pred             HHHHHHHHHHH
Q 022295          285 LLRNTLDGAKR  295 (299)
Q Consensus       285 L~~n~v~a~~~  295 (299)
                      +...+++..++
T Consensus       344 ~~~~~~~nl~~  354 (393)
T 2nac_A          344 YAAGTREILEC  354 (393)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444443333

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.87  E-value=2.2e-05  Score=75.81  Aligned_cols=81  Identities=19%  Similarity=0.332  Sum_probs=67.2

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------CChhhhccCCcEEEEecCCC----CcCCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------TDPESIVREADIVIAAAGQA----MMIKGS  227 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------~~l~~~~~~ADIVIsa~g~p----~~i~~~  227 (299)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.          .++.+.+++||+|+..++..    +++..+
T Consensus       140 ~~el~gktlGiIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  218 (404)
T 1sc6_A          140 SFEARGKKLGIIGYGHI-GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK  218 (404)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             ccccCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHH
Confidence            56899999999999996 9999999999999999987632          26778899999999998843    356553


Q ss_pred             ---ccCCCeEEEEeeccCC
Q 022295          228 ---WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       228 ---~vk~gavVIDvg~~~~  243 (299)
                         .+|+|+++||++.-..
T Consensus       219 ~l~~mk~ga~lIN~aRg~~  237 (404)
T 1sc6_A          219 EISLMKPGSLLINASRGTV  237 (404)
T ss_dssp             HHHHSCTTEEEEECSCSSS
T ss_pred             HHhhcCCCeEEEECCCChH
Confidence               3699999999997654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.86  E-value=2.7e-05  Score=73.21  Aligned_cols=131  Identities=22%  Similarity=0.302  Sum_probs=86.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------ChhhhccCCcEEEEecCCC----CcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------DPESIVREADIVIAAAGQA----MMIKG  226 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------~l~~~~~~ADIVIsa~g~p----~~i~~  226 (299)
                      .++.|+++.|||.|.+ |+.+|..|...|++|++++++..            ++.+.+++||+|+.+++..    +++..
T Consensus       142 ~~l~g~~vgIIG~G~i-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~  220 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAI-GKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINE  220 (333)
T ss_dssp             CCSTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCH
T ss_pred             CCCCcCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCH
Confidence            6899999999999886 99999999999999999876532            4667789999999999854    35653


Q ss_pred             ---CccCCCeEEEEeeccCCCCCcc-----CCCcee---eccCCc------hhhhh-h-hceeccCCCCccHHHHHHHHH
Q 022295          227 ---SWIKPGAAVIDVGTNAVDDSTK-----KSGYRL---VGDVDF------HEACK-V-AGCVTPVPGGVGPMTVAMLLR  287 (299)
Q Consensus       227 ---~~vk~gavVIDvg~~~~~~~~~-----~~g~kl---~GDvdf------~~~~~-~-a~~iTPVPGGVGp~T~a~L~~  287 (299)
                         ..+++| ++||++....-+...     ..| ++   .-||--      ....+ . .-.+||-.+|.-.-+..-+.+
T Consensus       221 ~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~-~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~~  298 (333)
T 2d0i_A          221 ERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQG-KLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGF  298 (333)
T ss_dssp             HHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTT-CBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHHH
T ss_pred             HHHhhCCCC-EEEECCCCcccCHHHHHHHHHcC-CceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHHH
Confidence               346899 999998654432100     011 12   124411      01122 2 246788878877666555555


Q ss_pred             HHHHHHHHH
Q 022295          288 NTLDGAKRV  296 (299)
Q Consensus       288 n~v~a~~~~  296 (299)
                      .+++..+++
T Consensus       299 ~~~~n~~~~  307 (333)
T 2d0i_A          299 RAVENLLKV  307 (333)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.85  E-value=6.6e-05  Score=70.05  Aligned_cols=75  Identities=13%  Similarity=0.247  Sum_probs=60.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhh-CC-CeEEEEcCCC-------------------CChhhhccCCcEEEEecCCCC-
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLK-AD-ATVTIVHSHT-------------------TDPESIVREADIVIAAAGQAM-  222 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~-~g-atVtv~~~~t-------------------~~l~~~~~~ADIVIsa~g~p~-  222 (299)
                      ...+++.|||.|.. |+..+..|.. .+ ..|++++++.                   .++++.+ ++|+||++|+... 
T Consensus       123 ~~~~~v~iIGaG~~-a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~p  200 (322)
T 1omo_A          123 KNSSVFGFIGCGTQ-AYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRKP  200 (322)
T ss_dssp             TTCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSSC
T ss_pred             CCCCEEEEEcCcHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCCc
Confidence            46789999999886 9999988876 33 5799998651                   2455677 8999999999654 


Q ss_pred             cCCCCccCCCeEEEEeecc
Q 022295          223 MIKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       223 ~i~~~~vk~gavVIDvg~~  241 (299)
                      +++.+|+++|.+|+|+|..
T Consensus       201 v~~~~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          201 VVKAEWVEEGTHINAIGAD  219 (322)
T ss_dssp             CBCGGGCCTTCEEEECSCC
T ss_pred             eecHHHcCCCeEEEECCCC
Confidence            4678999999999999743

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.84  E-value=1.1e-05  Score=76.49  Aligned_cols=78  Identities=26%  Similarity=0.391  Sum_probs=58.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccCCcEEEEecCCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g~p~  222 (299)
                      .+.|++|+|+|.|+ +|+.++..|...|++|++++++..                     ++.+.++.+|+||.++|.+.
T Consensus       163 ~l~~~~V~ViGaG~-iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          163 GVAPASVVILGGGT-VGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             BBCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CCCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            47899999999966 599999999999999999976521                     23356778999999998653


Q ss_pred             -----cCCC---CccCCCeEEEEeeccC
Q 022295          223 -----MIKG---SWIKPGAAVIDVGTNA  242 (299)
Q Consensus       223 -----~i~~---~~vk~gavVIDvg~~~  242 (299)
                           ++..   ..+++|.++||+|...
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~~~  269 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAVDQ  269 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC---
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEecCC
Confidence                 3444   3358899999999753

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=97.70  E-value=8.4e-05  Score=72.70  Aligned_cols=187  Identities=20%  Similarity=0.220  Sum_probs=134.0

Q ss_pred             CCcEEEEEEECCC--------c-ccHHHHHHHHHHHHHc-CCceeeecCCCCC-----CHHHHHHHHHHhcCCCCceEEE
Q 022295           38 KVPGLAVVIVGGR--------K-DSQSYVSMKRKACAEV-GIKSFDIDLPEQV-----SEAELISKVHELNVMPDVHGIL  102 (299)
Q Consensus        38 ~~P~Laii~vg~d--------~-~s~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~-----~~~el~~~i~~ln~d~~v~GIl  102 (299)
                      +...+++|.=|+.        + ++.-=...|.-.+..+ ||++.-++|....     +.+++.+.++.+-  |++-||.
T Consensus        89 kgn~VaVVTDG~aILGLGDiG~~agmpImeGKl~Lyk~~aGId~lPI~LD~gt~~~~~d~defve~v~~~~--P~fG~In  166 (487)
T 3nv9_A           89 RGNFVGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDAVPICIDSKNKEGKNDPDAVIEFVQRIQ--HTFGAIN  166 (487)
T ss_dssp             GGGEEEEEECSSSBGGGBCCCGGGGHHHHHHHHHHHHHHHCCEEEEEECCCBCTTSCBCHHHHHHHHHHHG--GGCSEEE
T ss_pred             cCCEEEEEEcCceeeeccccccccCCchhhhHHHHHHhcCCCceeeeEEeCCCccccCCHHHHHHHHHHhC--CCCCeec
Confidence            4467777776543        2 3455556777777775 7999888886431     4689999999986  6777866


Q ss_pred             EeCCCCCCCCH---HHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccc
Q 022295          103 VQLPLPKHINE---EKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIV  179 (299)
Q Consensus       103 vq~Plp~~i~~---~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~v  179 (299)
                      .     +.+..   -++++....+-|+.-||.          +..+---+|..|++..|+-.+.+++..++++.|+|.+ 
T Consensus       167 l-----EDf~ap~af~il~ryr~~~~ipvFnD----------D~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaA-  230 (487)
T 3nv9_A          167 L-----EDISQPNCYKILDVLRESCDIPVWHD----------DQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSS-  230 (487)
T ss_dssp             E-----CSCCTTHHHHHHHHHHHHCSSCEEET----------TTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHH-
T ss_pred             H-----hhcCCchHHHHHHHHHhhccCCcccc----------ccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-
Confidence            5     33332   233333332224444442          2334345567889999999999999999999999987 


Q ss_pred             hHHHHHHHhhCCC---eEEEEcCC------------------------------CCChhhhccCCcEEEEecCC-CCcCC
Q 022295          180 GLPVSLLLLKADA---TVTIVHSH------------------------------TTDPESIVREADIVIAAAGQ-AMMIK  225 (299)
Q Consensus       180 G~pla~lL~~~ga---tVtv~~~~------------------------------t~~l~~~~~~ADIVIsa~g~-p~~i~  225 (299)
                      |-.++.+|...|.   .+++|+++                              ..+|.+.++.+|++|...+. |+.++
T Consensus       231 Gigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~~pg~ft  310 (487)
T 3nv9_A          231 NTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVK  310 (487)
T ss_dssp             HHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCSSCCCCC
T ss_pred             HHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEecccCCCCCC
Confidence            9999999999998   69999754                              12467889999999977743 89999


Q ss_pred             CCccC---CCeEEEEeeccCC
Q 022295          226 GSWIK---PGAAVIDVGTNAV  243 (299)
Q Consensus       226 ~~~vk---~gavVIDvg~~~~  243 (299)
                      ++||+   +..+|+-++ ||.
T Consensus       311 ~e~V~~Ma~~PIIFaLS-NPt  330 (487)
T 3nv9_A          311 AEWIKSMGEKPIVFCCA-NPV  330 (487)
T ss_dssp             HHHHHTSCSSCEEEECC-SSS
T ss_pred             HHHHHhhcCCCEEEECC-CCC
Confidence            99985   478888887 554

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.69  E-value=4.9e-05  Score=71.56  Aligned_cols=81  Identities=20%  Similarity=0.265  Sum_probs=67.5

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-----------CChhhhccCCcEEEEecC-CC---CcCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-----------TDPESIVREADIVIAAAG-QA---MMIKG  226 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-----------~~l~~~~~~ADIVIsa~g-~p---~~i~~  226 (299)
                      +.++.||++.|||.|.+ |+.+|..+..-|++|..+++..           .++.+.+++||+|+..++ .+   ++|+.
T Consensus       136 ~~~l~g~tvGIiG~G~I-G~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~  214 (334)
T 3kb6_A          136 ARELNRLTLGVIGTGRI-GSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINE  214 (334)
T ss_dssp             BCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred             cceecCcEEEEECcchH-HHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCH
Confidence            35789999999999996 9999999999999999887543           357789999999998887 33   47877


Q ss_pred             Cc---cCCCeEEEEeeccCC
Q 022295          227 SW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       227 ~~---vk~gavVIDvg~~~~  243 (299)
                      +.   +|+|+++|++|.-.+
T Consensus       215 ~~l~~mk~~a~lIN~aRG~i  234 (334)
T 3kb6_A          215 ERISLMKDGVYLINTARGKV  234 (334)
T ss_dssp             HHHHHSCTTEEEEECSCGGG
T ss_pred             HHHhhcCCCeEEEecCcccc
Confidence            65   599999999997654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.68  E-value=1.4e-05  Score=71.37  Aligned_cols=79  Identities=18%  Similarity=0.303  Sum_probs=56.4

Q ss_pred             HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC-----------------------------hhhhcc
Q 022295          159 KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD-----------------------------PESIVR  209 (299)
Q Consensus       159 ~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~-----------------------------l~~~~~  209 (299)
                      ++...++.++++.|||.|.+ |.+++..|++.|.+|++++++...                             +.+.++
T Consensus        11 ~~~~~~~~~~kIgiIG~G~m-G~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~   89 (245)
T 3dtt_A           11 HHENLYFQGMKIAVLGTGTV-GRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAA   89 (245)
T ss_dssp             --------CCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHH
T ss_pred             cccccccCCCeEEEECCCHH-HHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHh
Confidence            34567889999999998886 999999999999999999865321                             235678


Q ss_pred             CCcEEEEecCCCCc---CC---CCccCCCeEEEEee
Q 022295          210 EADIVIAAAGQAMM---IK---GSWIKPGAAVIDVG  239 (299)
Q Consensus       210 ~ADIVIsa~g~p~~---i~---~~~vk~gavVIDvg  239 (299)
                      +||+||.+++.+..   +.   ...+ +|.+|||++
T Consensus        90 ~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           90 GAELVVNATEGASSIAALTAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             HCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECC
T ss_pred             cCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECC
Confidence            89999999986542   21   2334 899999998

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.66  E-value=3.9e-05  Score=71.16  Aligned_cols=76  Identities=20%  Similarity=0.395  Sum_probs=61.3

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCc----CCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMM----IKG  226 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~----i~~  226 (299)
                      ...++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.+++||+||.+++.+..    +..
T Consensus        29 ~~~~~I~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           29 PYARKITFLGTGSM-GLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             CCCSEEEEECCTTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             cCCCEEEEECccHH-HHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            35679999999885 9999999999999999998752              4667888999999999986532    221


Q ss_pred             ----CccCCCeEEEEeecc
Q 022295          227 ----SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 ----~~vk~gavVIDvg~~  241 (299)
                          +.+++|.+|||.+..
T Consensus       108 ~~~~~~l~~~~~vi~~st~  126 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASI  126 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCC
T ss_pred             hhHHhhCCCCCEEEecCCC
Confidence                246899999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.66  E-value=3.2e-05  Score=70.23  Aligned_cols=73  Identities=21%  Similarity=0.277  Sum_probs=58.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----cC-C-C-
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----MI-K-G-  226 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~i-~-~-  226 (299)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.+++||+||.+++.|.    .+ . . 
T Consensus         2 ~~i~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~   80 (287)
T 3pef_A            2 QKFGFIGLGIM-GSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHG   80 (287)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEEeecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcch
Confidence            68999998875 9999999999999999998752              356678889999999998653    22 1 1 


Q ss_pred             --CccCCCeEEEEeecc
Q 022295          227 --SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 --~~vk~gavVIDvg~~  241 (299)
                        +.+++|.+|||.+..
T Consensus        81 l~~~l~~~~~vi~~st~   97 (287)
T 3pef_A           81 VLEGIGEGRGYVDMSTV   97 (287)
T ss_dssp             HHHHCCTTCEEEECSCC
T ss_pred             HhhcCCCCCEEEeCCCC
Confidence              346889999999753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.60  E-value=4.2e-05  Score=70.58  Aligned_cols=75  Identities=21%  Similarity=0.269  Sum_probs=60.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----cC---
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----MI---  224 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~i---  224 (299)
                      +-++|.|||.|.+ |.+++..|++.|..|++++++.              .++.+.+++||+||.+++.|.    .+   
T Consensus        20 ~m~~I~iIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~   98 (310)
T 3doj_A           20 HMMEVGFLGLGIM-GKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDK   98 (310)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred             cCCEEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCc
Confidence            3478999998875 9999999999999999998752              456678899999999998763    22   


Q ss_pred             C--CCccCCCeEEEEeecc
Q 022295          225 K--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       225 ~--~~~vk~gavVIDvg~~  241 (299)
                      .  .+.+++|.+|||++..
T Consensus        99 ~~l~~~l~~g~~vv~~st~  117 (310)
T 3doj_A           99 GGVLEQICEGKGYIDMSTV  117 (310)
T ss_dssp             TCGGGGCCTTCEEEECSCC
T ss_pred             hhhhhccCCCCEEEECCCC
Confidence            1  1356889999998864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.58  E-value=7e-05  Score=68.58  Aligned_cols=72  Identities=17%  Similarity=0.245  Sum_probs=58.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCcCC------CC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMMIK------GS  227 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~i~------~~  227 (299)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.++ ||+||.+++.+..+.      ..
T Consensus        16 ~~I~vIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~   93 (296)
T 3qha_A           16 LKLGYIGLGNM-GAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAG   93 (296)
T ss_dssp             CCEEEECCSTT-HHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHT
T ss_pred             CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHH
Confidence            58999998885 9999999999999999998763              35667778 999999998653221      24


Q ss_pred             ccCCCeEEEEeecc
Q 022295          228 WIKPGAAVIDVGTN  241 (299)
Q Consensus       228 ~vk~gavVIDvg~~  241 (299)
                      .+++|.+|||.+..
T Consensus        94 ~l~~g~ivv~~st~  107 (296)
T 3qha_A           94 HAKPGTVIAIHSTI  107 (296)
T ss_dssp             TCCTTCEEEECSCC
T ss_pred             hcCCCCEEEEeCCC
Confidence            57899999998864

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.56  E-value=0.00014  Score=67.35  Aligned_cols=73  Identities=25%  Similarity=0.385  Sum_probs=59.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCc----C-CC--
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMM----I-KG--  226 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~----i-~~--  226 (299)
                      |+|-+||-|.+ |.|+|..|++.|..|++++++.              .++.+..+.+|+||+..+.+.-    + ..  
T Consensus         4 ~kIgfIGlG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g   82 (300)
T 3obb_A            4 KQIAFIGLGHM-GAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   82 (300)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred             CEEEEeeehHH-HHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence            68999999997 9999999999999999999762              4677889999999999986541    1 22  


Q ss_pred             --CccCCCeEEEEeecc
Q 022295          227 --SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 --~~vk~gavVIDvg~~  241 (299)
                        +.+++|.++||.++.
T Consensus        83 ~~~~~~~g~iiId~sT~   99 (300)
T 3obb_A           83 LLAHIAPGTLVLECSTI   99 (300)
T ss_dssp             STTSCCC-CEEEECSCC
T ss_pred             hhhcCCCCCEEEECCCC
Confidence              346889999999875

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.55  E-value=7.7e-05  Score=71.12  Aligned_cols=80  Identities=20%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             cCCHHHHHHH----HHh-hCC-CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh--------------hhh
Q 022295          148 PCTPKGCLEL----LKR-SGV-TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP--------------ESI  207 (299)
Q Consensus       148 PcT~~av~~l----l~~-~~~-~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l--------------~~~  207 (299)
                      +.|+.|+...    +++ +|. +++||+|+|+|.|++ |..+|..|.+.|++|++++++...+              .+.
T Consensus       148 ~aTg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~V-G~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~l  226 (364)
T 1leh_A          148 PVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNV-AKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAI  226 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGT
T ss_pred             cchhhHHHHHHHHHHHhhccccCCCcCEEEEECchHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHH
Confidence            5777776554    444 476 899999999999885 9999999999999999887652211              122


Q ss_pred             c-cCCcEEEEecCCCCcCCCCcc
Q 022295          208 V-READIVIAAAGQAMMIKGSWI  229 (299)
Q Consensus       208 ~-~~ADIVIsa~g~p~~i~~~~v  229 (299)
                      + .++||+|.+. ..+.++.+.+
T Consensus       227 l~~~~DIvip~a-~~~~I~~~~~  248 (364)
T 1leh_A          227 YGVTCDIFAPCA-LGAVLNDFTI  248 (364)
T ss_dssp             TTCCCSEEEECS-CSCCBSTTHH
T ss_pred             hccCCcEeeccc-hHHHhCHHHH
Confidence            2 3789999774 4446666554

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.53  E-value=4.3e-05  Score=69.41  Aligned_cols=73  Identities=23%  Similarity=0.295  Sum_probs=58.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----cC---C-
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----MI---K-  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~i---~-  225 (299)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.+++||+||.+++.+.    .+   . 
T Consensus         2 ~~I~iiG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~   80 (287)
T 3pdu_A            2 TTYGFLGLGIM-GGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANG   80 (287)
T ss_dssp             CCEEEECCSTT-HHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CeEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchh
Confidence            47999998885 9999999999999999998752              466778899999999998763    22   1 


Q ss_pred             -CCccCCCeEEEEeecc
Q 022295          226 -GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       226 -~~~vk~gavVIDvg~~  241 (299)
                       .+.+++|.++||.+..
T Consensus        81 l~~~l~~g~~vv~~st~   97 (287)
T 3pdu_A           81 VLEGIGGGRGYIDMSTV   97 (287)
T ss_dssp             GGGTCCTTCEEEECSCC
T ss_pred             hhhcccCCCEEEECCCC
Confidence             1456889999998864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.51  E-value=6.2e-05  Score=69.03  Aligned_cols=74  Identities=18%  Similarity=0.228  Sum_probs=59.4

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------------CCChhhhccCCcEEEEecCCCC----cC---
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------------TTDPESIVREADIVIAAAGQAM----MI---  224 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------------t~~l~~~~~~ADIVIsa~g~p~----~i---  224 (299)
                      .++|.|||.|.+ |.+++..|.+.|.+|++++++               +.++.+.+++||+||.+++.+.    .+   
T Consensus         7 ~~~I~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~   85 (303)
T 3g0o_A            7 DFHVGIVGLGSM-GMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE   85 (303)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred             CCeEEEECCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence            468999998875 999999999999999999865               2456677899999999998753    12   


Q ss_pred             C--CCccCCCeEEEEeecc
Q 022295          225 K--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       225 ~--~~~vk~gavVIDvg~~  241 (299)
                      .  .+.+++|.+|||.+..
T Consensus        86 ~~l~~~l~~g~ivv~~st~  104 (303)
T 3g0o_A           86 DGVAHLMKPGSAVMVSSTI  104 (303)
T ss_dssp             CCCGGGSCTTCEEEECSCC
T ss_pred             hhHHhhCCCCCEEEecCCC
Confidence            1  1456899999999854

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.49  E-value=6.5e-05  Score=69.22  Aligned_cols=77  Identities=16%  Similarity=0.140  Sum_probs=61.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCcEEEEecCCCC----cCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREADIVIAAAGQAM----MIK  225 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~ADIVIsa~g~p~----~i~  225 (299)
                      ....++|.|||.|.+ |.+++..|.+.|.+|++++++              +.++.+.+++||+||.+++.+.    .+.
T Consensus         6 ~~~~~~IgiIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAM-GTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCSCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             ccCCCeEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            455688999998885 999999999999999999875              2467788899999999998654    232


Q ss_pred             C---CccCCCeEEEEeecc
Q 022295          226 G---SWIKPGAAVIDVGTN  241 (299)
Q Consensus       226 ~---~~vk~gavVIDvg~~  241 (299)
                      .   ..+++|.+|||++..
T Consensus        85 ~~~l~~~~~g~ivid~st~  103 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTN  103 (306)
T ss_dssp             STTHHHHTTTCEEEECCCC
T ss_pred             ccchhhccCCCEEEECCCC
Confidence            1   124789999999864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.49  E-value=0.00014  Score=69.04  Aligned_cols=77  Identities=14%  Similarity=0.210  Sum_probs=60.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCC---cEEEEecCCCCc---C
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREA---DIVIAAAGQAMM---I  224 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~A---DIVIsa~g~p~~---i  224 (299)
                      +++++|.|||.|.+ |.++|..|++.|.+|++++++              +.++.+.++++   |+||.+++.+..   +
T Consensus        20 m~~mkIgiIGlG~m-G~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRM-GADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHH
T ss_pred             hcCCEEEEECchHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHH
Confidence            46789999998875 999999999999999999875              24677788888   999999986631   1


Q ss_pred             C--CCccCCCeEEEEeeccC
Q 022295          225 K--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       225 ~--~~~vk~gavVIDvg~~~  242 (299)
                      .  ...+++|.+|||.+...
T Consensus        99 ~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           99 QRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             HHHGGGCCTTCEEEECSSCC
T ss_pred             HHHHhhCCCCCEEEeCCCCC
Confidence            1  24578899999988643

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.45  E-value=0.00016  Score=64.39  Aligned_cols=121  Identities=16%  Similarity=0.269  Sum_probs=70.9

Q ss_pred             HHHHHHHhh--CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------C-hhhhccCCc
Q 022295          153 GCLELLKRS--GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------D-PESIVREAD  212 (299)
Q Consensus       153 av~~ll~~~--~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------~-l~~~~~~AD  212 (299)
                      |-++.+++|  .++++||+|+|||.|. ||...+..|++.||.|+++.....                 . ..+.+..+|
T Consensus        15 ~~~~~~~~~Pifl~L~gk~VLVVGgG~-va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~ad   93 (223)
T 3dfz_A           15 GHIEGRHMYTVMLDLKGRSVLVVGGGT-IATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVF   93 (223)
T ss_dssp             -------CCEEEECCTTCCEEEECCSH-HHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCS
T ss_pred             CcccccCccccEEEcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCC
Confidence            444445444  3579999999999877 599999999999999999864421                 1 124578899


Q ss_pred             EEEEecCCCCc---CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhh---hceeccCCCCccHHHHHHHH
Q 022295          213 IVIAAAGQAMM---IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV---AGCVTPVPGGVGPMTVAMLL  286 (299)
Q Consensus       213 IVIsa~g~p~~---i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~---a~~iTPVPGGVGp~T~a~L~  286 (299)
                      +||+||+.+..   |... -+.|. .|++.-+|.           .+|+=|.++.+.   .-+||  -||-+|..+..|-
T Consensus        94 LVIaAT~d~~~N~~I~~~-ak~gi-~VNvvD~p~-----------~~~f~~Paiv~rg~l~iaIS--T~G~sP~la~~iR  158 (223)
T 3dfz_A           94 FIVVATNDQAVNKFVKQH-IKNDQ-LVNMASSFS-----------DGNIQIPAQFSRGRLSLAIS--TDGASPLLTKRIK  158 (223)
T ss_dssp             EEEECCCCTHHHHHHHHH-SCTTC-EEEC----------------CCSEECCEEEEETTEEEEEE--CTTSCHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHH-HhCCC-EEEEeCCcc-----------cCeEEEeeEEEeCCEEEEEE--CCCCCcHHHHHHH
Confidence            99999998863   2211 23343 344443331           122323443222   22343  4788988877665


Q ss_pred             HHH
Q 022295          287 RNT  289 (299)
Q Consensus       287 ~n~  289 (299)
                      +.+
T Consensus       159 ~~i  161 (223)
T 3dfz_A          159 EDL  161 (223)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.41  E-value=0.00013  Score=67.80  Aligned_cols=72  Identities=15%  Similarity=0.123  Sum_probs=58.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC-------------------C-ChhhhccCCcEEEEecCCCCcCC-
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT-------------------T-DPESIVREADIVIAAAGQAMMIK-  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t-------------------~-~l~~~~~~ADIVIsa~g~p~~i~-  225 (299)
                      ++|.|||.|.+ |.+++..|++.| .+|++++++.                   . ++.+.+++||+||.+++.+...+ 
T Consensus        25 m~IgvIG~G~m-G~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~~~~s~~e~~~~aDvVi~avp~~~~~~~  103 (317)
T 4ezb_A           25 TTIAFIGFGEA-AQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACADVVLSLVVGAATKAV  103 (317)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTCEEESSGGGGGGCSEEEECCCGGGHHHH
T ss_pred             CeEEEECccHH-HHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCCCCCCHHHHHhcCCEEEEecCCHHHHHH
Confidence            68999998875 999999999999 9999998763                   2 56677889999999998764321 


Q ss_pred             ----CCccCCCeEEEEeec
Q 022295          226 ----GSWIKPGAAVIDVGT  240 (299)
Q Consensus       226 ----~~~vk~gavVIDvg~  240 (299)
                          ...+++|.+|||.+.
T Consensus       104 ~~~i~~~l~~~~ivv~~st  122 (317)
T 4ezb_A          104 AASAAPHLSDEAVFIDLNS  122 (317)
T ss_dssp             HHHHGGGCCTTCEEEECCS
T ss_pred             HHHHHhhcCCCCEEEECCC
Confidence                245788999999875

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.40  E-value=0.00015  Score=66.86  Aligned_cols=73  Identities=14%  Similarity=0.260  Sum_probs=56.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCc----CCC---
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMM----IKG---  226 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~----i~~---  226 (299)
                      ++|-+||-|.+ |.|+|..|++.|.+|++++++.              .++.+.++.+|+||+.++.+.-    +..   
T Consensus         6 ~kIgfIGLG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~   84 (297)
T 4gbj_A            6 EKIAFLGLGNL-GTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELV   84 (297)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHH
T ss_pred             CcEEEEecHHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHH
Confidence            57999999986 9999999999999999998653              3567889999999999987642    222   


Q ss_pred             CccCCCeEEEEeecc
Q 022295          227 SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 ~~vk~gavVIDvg~~  241 (299)
                      ..+++|.++||.+..
T Consensus        85 ~~~~~~~iiid~sT~   99 (297)
T 4gbj_A           85 EKLGKDGVHVSMSTI   99 (297)
T ss_dssp             HHHCTTCEEEECSCC
T ss_pred             hhcCCCeEEEECCCC
Confidence            235789999998864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.38  E-value=0.00018  Score=66.54  Aligned_cols=74  Identities=14%  Similarity=0.201  Sum_probs=58.8

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC----------------CCChhhhccCCcEEEEecCCCCcC---C-
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH----------------TTDPESIVREADIVIAAAGQAMMI---K-  225 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~----------------t~~l~~~~~~ADIVIsa~g~p~~i---~-  225 (299)
                      -++|.|||.|.+ |.+++..|.+.|. .|++++++                +.++.+.+++||+||.+++.+..+   . 
T Consensus        24 ~~~I~iIG~G~m-G~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~  102 (312)
T 3qsg_A           24 AMKLGFIGFGEA-ASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQ  102 (312)
T ss_dssp             -CEEEEECCSHH-HHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHH
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHh
Confidence            368999998885 9999999999999 99999884                135668889999999999876532   1 


Q ss_pred             -CCccCCCeEEEEeecc
Q 022295          226 -GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       226 -~~~vk~gavVIDvg~~  241 (299)
                       .+.+++|++|||.+..
T Consensus       103 l~~~l~~~~ivvd~st~  119 (312)
T 3qsg_A          103 AGPHLCEGALYADFTSC  119 (312)
T ss_dssp             HGGGCCTTCEEEECCCC
T ss_pred             hHhhcCCCCEEEEcCCC
Confidence             2456789999998653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.37  E-value=0.0001  Score=69.15  Aligned_cols=74  Identities=23%  Similarity=0.319  Sum_probs=58.3

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------ChhhhccCCcEEEEecCCCC---cCC--
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------DPESIVREADIVIAAAGQAM---MIK--  225 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------~l~~~~~~ADIVIsa~g~p~---~i~--  225 (299)
                      +++++|.|||.|.+ |..++..|.+.|..|++++++..              ++.+.+++||+||.+++...   ++.  
T Consensus        14 l~~~~I~IIG~G~m-G~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~~~~v~~~~   92 (338)
T 1np3_A           14 IQGKKVAIIGYGSQ-GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEE   92 (338)
T ss_dssp             HHTSCEEEECCSHH-HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred             hcCCEEEEECchHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHHHHHHHHHH
Confidence            45789999998875 99999999999999999876542              34567889999999998532   333  


Q ss_pred             -CCccCCCeEEEEee
Q 022295          226 -GSWIKPGAAVIDVG  239 (299)
Q Consensus       226 -~~~vk~gavVIDvg  239 (299)
                       ...+++|++|+|++
T Consensus        93 i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           93 IEPNLKKGATLAFAH  107 (338)
T ss_dssp             TGGGCCTTCEEEESC
T ss_pred             HHhhCCCCCEEEEcC
Confidence             24578899999875

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.37  E-value=5.3e-05  Score=74.44  Aligned_cols=79  Identities=19%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCCCC----------------------ChhhhccCCcEEEEe
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSHTT----------------------DPESIVREADIVIAA  217 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~t~----------------------~l~~~~~~ADIVIsa  217 (299)
                      .+.++++++|+|+|+|++ |++++..|++. +++|++++++..                      ++.+.++.+|+||++
T Consensus        17 ~~~~l~~k~VlIiGAGgi-G~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~   95 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFV-AQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISL   95 (467)
T ss_dssp             ------CEEEEEECCSTT-HHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred             cccCCCCCEEEEECChHH-HHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence            356788999999999775 99999999988 679999987521                      233456789999999


Q ss_pred             cCCCC--cCCCCccCCCeEEEEeec
Q 022295          218 AGQAM--MIKGSWIKPGAAVIDVGT  240 (299)
Q Consensus       218 ~g~p~--~i~~~~vk~gavVIDvg~  240 (299)
                      +|...  .+....++.|..++|+.+
T Consensus        96 tp~~~~~~v~~a~l~~g~~vvd~~~  120 (467)
T 2axq_A           96 IPYTFHPNVVKSAIRTKTDVVTSSY  120 (467)
T ss_dssp             SCGGGHHHHHHHHHHHTCEEEECSC
T ss_pred             CchhhhHHHHHHHHhcCCEEEEeec
Confidence            98532  133455678899999876

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.37  E-value=0.00015  Score=67.26  Aligned_cols=75  Identities=16%  Similarity=0.128  Sum_probs=58.7

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC----------------CChhh-hccCCcEEEEecCCCCc---
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT----------------TDPES-IVREADIVIAAAGQAMM---  223 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t----------------~~l~~-~~~~ADIVIsa~g~p~~---  223 (299)
                      .-++|.|||.|.+ |.+++..|.+.|.  +|++++++.                .++.+ .+++||+||.+++....   
T Consensus        32 ~~~kI~IIG~G~m-G~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v  110 (314)
T 3ggo_A           32 SMQNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI  110 (314)
T ss_dssp             SCSEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHH
T ss_pred             CCCEEEEEeeCHH-HHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHHH
Confidence            3479999998775 9999999999998  999998652                35567 78999999999975432   


Q ss_pred             CC--CCccCCCeEEEEeecc
Q 022295          224 IK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       224 i~--~~~vk~gavVIDvg~~  241 (299)
                      +.  ...++++++|+|++..
T Consensus       111 l~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          111 AKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             HHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHhhccCCCcEEEECCCC
Confidence            21  1347899999999853

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.33  E-value=0.00018  Score=65.91  Aligned_cols=73  Identities=21%  Similarity=0.310  Sum_probs=58.2

Q ss_pred             CcEEEEEc-CCccchHHHHHHHhhCCCeEEEEcCCCC-ChhhhccCCcEEEEecCCCCc---CC--CCccCCCeEEEEee
Q 022295          167 GKRAVVVG-RSNIVGLPVSLLLLKADATVTIVHSHTT-DPESIVREADIVIAAAGQAMM---IK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       167 gk~vvViG-~s~~vG~pla~lL~~~gatVtv~~~~t~-~l~~~~~~ADIVIsa~g~p~~---i~--~~~vk~gavVIDvg  239 (299)
                      .++|.||| .|.+ |..++..|.+.|..|++++++.. +..+.+++||+||.+++...+   +.  ...++++++|+|++
T Consensus        21 ~~~I~iIGg~G~m-G~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           21 IHKIVIVGGYGKL-GGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             CCCEEEETTTSHH-HHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECC
T ss_pred             CCEEEEEcCCCHH-HHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence            46899999 8775 99999999999999999986542 566788999999999985442   21  23578899999986


Q ss_pred             c
Q 022295          240 T  240 (299)
Q Consensus       240 ~  240 (299)
                      .
T Consensus       100 s  100 (298)
T 2pv7_A          100 S  100 (298)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.26  E-value=0.00018  Score=64.70  Aligned_cols=71  Identities=14%  Similarity=0.282  Sum_probs=55.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC-------------hhhhccCCcEEEEecCCCC-c---CC--CCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD-------------PESIVREADIVIAAAGQAM-M---IK--GSW  228 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~-------------l~~~~~~ADIVIsa~g~p~-~---i~--~~~  228 (299)
                      ++|.|||.|.+ |..++..|.+ |.+|++++++...             +.+.+.++|+||.+++.+. +   +.  ..+
T Consensus         2 ~~i~iiG~G~~-G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~   79 (289)
T 2cvz_A            2 EKVAFIGLGAM-GYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPY   79 (289)
T ss_dssp             CCEEEECCSTT-HHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEcccHH-HHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHHHHHHhh
Confidence            36999999885 9999999999 9999999765321             3456788999999999764 2   21  246


Q ss_pred             cCCCeEEEEeec
Q 022295          229 IKPGAAVIDVGT  240 (299)
Q Consensus       229 vk~gavVIDvg~  240 (299)
                      +++|.+|+|++.
T Consensus        80 l~~~~~vv~~s~   91 (289)
T 2cvz_A           80 LREGTYWVDATS   91 (289)
T ss_dssp             CCTTEEEEECSC
T ss_pred             CCCCCEEEECCC
Confidence            788999999864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.25  E-value=0.00023  Score=64.38  Aligned_cols=70  Identities=23%  Similarity=0.387  Sum_probs=55.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----cCCC----
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----MIKG----  226 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~i~~----  226 (299)
                      +|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.|.    .+..    
T Consensus         2 ~i~iiG~G~m-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            2 PVGFIGLGNM-GNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CEEEECCSTT-HHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             eEEEEeccHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            6899998885 9999999999999999998652              356677889999999998663    2221    


Q ss_pred             -CccCCCeEEEEee
Q 022295          227 -SWIKPGAAVIDVG  239 (299)
Q Consensus       227 -~~vk~gavVIDvg  239 (299)
                       ..+++|.+|||.+
T Consensus        81 ~~~l~~~~~vv~~s   94 (296)
T 2gf2_A           81 LKKVKKGSLLIDSS   94 (296)
T ss_dssp             GGTCCTTCEEEECS
T ss_pred             HhcCCCCCEEEECC
Confidence             2568899999954

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.22  E-value=0.00021  Score=65.46  Aligned_cols=72  Identities=28%  Similarity=0.436  Sum_probs=57.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----cCCC---
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----MIKG---  226 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~i~~---  226 (299)
                      ++|.|||.|.+ |.+++..|.+.|..|++++++.              .++.+.++++|+||.+++.|.    .+..   
T Consensus        31 ~~I~iIG~G~m-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~  109 (316)
T 2uyy_A           31 KKIGFLGLGLM-GSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG  109 (316)
T ss_dssp             SCEEEECCSHH-HHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CeEEEEcccHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence            57999998775 9999999999999999997652              245567789999999998543    2221   


Q ss_pred             --CccCCCeEEEEeec
Q 022295          227 --SWIKPGAAVIDVGT  240 (299)
Q Consensus       227 --~~vk~gavVIDvg~  240 (299)
                        +.+++|.+|||++.
T Consensus       110 ~~~~l~~~~~vv~~s~  125 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMST  125 (316)
T ss_dssp             GGGGCCTTCEEEECSC
T ss_pred             HhhcCCCCCEEEECCC
Confidence              56789999999863

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=97.18  E-value=0.021  Score=53.19  Aligned_cols=189  Identities=12%  Similarity=0.088  Sum_probs=123.6

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCC---CCc-EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCC---C-C
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYG---KVP-GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ---V-S   81 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~---~~P-~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~---~-~   81 (299)
                      .+|+-..+.++=.+.|-+....+++...   .+- .++.+-.  .| |-.=--+=..++.++|.++.++.-...   . .
T Consensus         8 h~ls~~dls~~ei~~ll~~A~~lk~~~~~~~L~gk~la~lF~--e~-STRTR~SFe~A~~~LGg~~i~l~~~~~~S~~~k   84 (310)
T 3csu_A            8 HIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFF--EA-STRTRLSFETSMHRLGASVVGFSDSANTSLGKK   84 (310)
T ss_dssp             CBCCGGGCCHHHHHHHHHHHHHHHHSCCTTTTTTCEEEEEES--SC-CHHHHHHHHHHHHTTTCEEEEESCC-----CCS
T ss_pred             CccchhhCCHHHHHHHHHHHHHHHhcccccccCCCEEEEEec--CC-CccHHHHHHHHHHHhCCeEEEeCCCccchhhcc
Confidence            4566566655444555555666664311   112 4554444  23 443334557899999999888864432   2 2


Q ss_pred             HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHh
Q 022295           82 EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKR  160 (299)
Q Consensus        82 ~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~  160 (299)
                      -|-+.+..+-|+.-  +|+|.+-.|-...  ...+.+..      ..+-.+|.|-   |   +...||-+.+ ++.+.++
T Consensus        85 gEsl~DTarvls~~--~D~iviR~~~~~~--~~~la~~~------~~vPVINag~---G---~~~HPtQaLaDl~Ti~e~  148 (310)
T 3csu_A           85 GETLADTISVISTY--VDAIVMRHPQEGA--ARLATEFS------GNVPVLNAGD---G---SNQHPTQTLLDLFTIQET  148 (310)
T ss_dssp             HHHHHHHHHHHTTT--CSEEEEEESSTTH--HHHHHHHC------TTCCEEEEEE---T---TSCCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHh--CCEEEEECCChhH--HHHHHHhc------CCCCEEcCcc---C---CCCCchHHHHHHHHHHHH
Confidence            36788888888875  7999998874332  23333322      1234566431   2   4568998888 5555555


Q ss_pred             hCCCcCCcEEEEEcCC--ccchHHHHHHHhhC-CCeEEEEcCC---------------------CCChhhhccCCcEEEE
Q 022295          161 SGVTIKGKRAVVVGRS--NIVGLPVSLLLLKA-DATVTIVHSH---------------------TTDPESIVREADIVIA  216 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s--~~vG~pla~lL~~~-gatVtv~~~~---------------------t~~l~~~~~~ADIVIs  216 (299)
                      .| +++|++++++|-+  +-|.+.++.+|... |++|+++.-.                     +.++.+.+++||+|.+
T Consensus       149 ~g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt  227 (310)
T 3csu_A          149 QG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYM  227 (310)
T ss_dssp             HS-CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEE
T ss_pred             hC-CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEE
Confidence            54 7999999999985  35799999999999 9999999622                     3567789999999997


Q ss_pred             ec
Q 022295          217 AA  218 (299)
Q Consensus       217 a~  218 (299)
                      -.
T Consensus       228 ~~  229 (310)
T 3csu_A          228 TR  229 (310)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.17  E-value=0.00066  Score=58.98  Aligned_cols=58  Identities=21%  Similarity=0.196  Sum_probs=43.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC--------------------hhhhccCCcEEEEecCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD--------------------PESIVREADIVIAAAGQ  220 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~--------------------l~~~~~~ADIVIsa~g~  220 (299)
                      ..++||+|+|.|+++-+|+.++..|+++|++|+++.++...                    +.+.+...|+||..+|.
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            35789999999999989999999999999999999876432                    23445566777766663

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.17  E-value=0.0003  Score=63.65  Aligned_cols=72  Identities=22%  Similarity=0.391  Sum_probs=56.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCcEEEEecCCCC----cCC--C-
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREADIVIAAAGQAM----MIK--G-  226 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~ADIVIsa~g~p~----~i~--~-  226 (299)
                      .+|.|||.|.+ |..++..|.+.|.+|++++++              +.++.+.++++|+||.+++.+.    .+.  . 
T Consensus         6 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~   84 (299)
T 1vpd_A            6 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG   84 (299)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             ceEEEECchHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcch
Confidence            37999998775 999999999999999999764              2356677889999999998653    231  1 


Q ss_pred             --CccCCCeEEEEeec
Q 022295          227 --SWIKPGAAVIDVGT  240 (299)
Q Consensus       227 --~~vk~gavVIDvg~  240 (299)
                        .++++|.+|||++.
T Consensus        85 l~~~l~~~~~vv~~s~  100 (299)
T 1vpd_A           85 IIEGAKPGTVLIDMSS  100 (299)
T ss_dssp             HHHHCCTTCEEEECSC
T ss_pred             HhhcCCCCCEEEECCC
Confidence              35788999999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.16  E-value=0.00031  Score=63.61  Aligned_cols=72  Identities=21%  Similarity=0.344  Sum_probs=57.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----cCC----
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----MIK----  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~i~----  225 (299)
                      .++.|||.|.+ |..++..|.+.|..|++++++.              .++.+.++++|+||.+++.+.    .+.    
T Consensus         5 ~~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            5 IKIGFIGLGAM-GKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CEEEEECCCTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            58999998875 9999999999999999997642              356677888999999998654    232    


Q ss_pred             -CCccCCCeEEEEeec
Q 022295          226 -GSWIKPGAAVIDVGT  240 (299)
Q Consensus       226 -~~~vk~gavVIDvg~  240 (299)
                       ..++++|.+|||++.
T Consensus        84 l~~~l~~~~~vv~~~~   99 (301)
T 3cky_A           84 VLSACKAGTVIVDMSS   99 (301)
T ss_dssp             HHHHSCTTCEEEECCC
T ss_pred             HhhcCCCCCEEEECCC
Confidence             134688999999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.13  E-value=0.00065  Score=59.08  Aligned_cols=74  Identities=23%  Similarity=0.333  Sum_probs=52.7

Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCC---cCC--CCccCCCeEE
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAM---MIK--GSWIKPGAAV  235 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~---~i~--~~~vk~gavV  235 (299)
                      .+..+.++++.|||.|.+ |.+++..|.+.|.+|++++++..    .+++||+||.+++.+.   ++.  ...++ ++++
T Consensus        13 ~~~~~~~~~I~iiG~G~m-G~~la~~l~~~g~~V~~~~~~~~----~~~~aD~vi~av~~~~~~~v~~~l~~~~~-~~~v   86 (209)
T 2raf_A           13 ENLYFQGMEITIFGKGNM-GQAIGHNFEIAGHEVTYYGSKDQ----ATTLGEIVIMAVPYPALAALAKQYATQLK-GKIV   86 (209)
T ss_dssp             -------CEEEEECCSHH-HHHHHHHHHHTTCEEEEECTTCC----CSSCCSEEEECSCHHHHHHHHHHTHHHHT-TSEE
T ss_pred             cccccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHH----HhccCCEEEEcCCcHHHHHHHHHHHHhcC-CCEE
Confidence            456788999999998775 99999999999999999977543    6789999999998322   121  12356 8999


Q ss_pred             EEeec
Q 022295          236 IDVGT  240 (299)
Q Consensus       236 IDvg~  240 (299)
                      +|+..
T Consensus        87 i~~~~   91 (209)
T 2raf_A           87 VDITN   91 (209)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            99864

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.11  E-value=0.00053  Score=61.81  Aligned_cols=71  Identities=14%  Similarity=0.257  Sum_probs=56.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----cCC----
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----MIK----  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~i~----  225 (299)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++ +.              .++.+.++++|+||.+++.+.    .+.    
T Consensus         4 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   81 (295)
T 1yb4_A            4 MKLGFIGLGIM-GSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHG   81 (295)
T ss_dssp             CEEEECCCSTT-HHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTS
T ss_pred             CEEEEEccCHH-HHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchh
Confidence            47999998885 9999999999999999887 42              245566889999999998764    232    


Q ss_pred             -CCccCCCeEEEEeec
Q 022295          226 -GSWIKPGAAVIDVGT  240 (299)
Q Consensus       226 -~~~vk~gavVIDvg~  240 (299)
                       ...+++|.+|||++.
T Consensus        82 l~~~l~~~~~vv~~s~   97 (295)
T 1yb4_A           82 CAKTSLQGKTIVDMSS   97 (295)
T ss_dssp             STTSCCTTEEEEECSC
T ss_pred             HhhcCCCCCEEEECCC
Confidence             245788999999864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.08  E-value=0.0006  Score=60.44  Aligned_cols=69  Identities=22%  Similarity=0.371  Sum_probs=53.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC----eEEEEcCC---------------CCChhhhccCCcEEEEecCCCCc----C
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA----TVTIVHSH---------------TTDPESIVREADIVIAAAGQAMM----I  224 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga----tVtv~~~~---------------t~~l~~~~~~ADIVIsa~g~p~~----i  224 (299)
                      +++.|||.|.+ |.+++..|.+.|.    .|++++++               +.+..+.++++|+||.++ .|..    +
T Consensus         3 ~~i~iIG~G~m-G~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav-~~~~~~~v~   80 (247)
T 3gt0_A            3 KQIGFIGCGNM-GMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSI-KPDLYASII   80 (247)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECS-CTTTHHHHC
T ss_pred             CeEEEECccHH-HHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEe-CHHHHHHHH
Confidence            57999998886 9999999999997    89999865               235667788999999999 4442    2


Q ss_pred             C--CCccCCCeEEEEe
Q 022295          225 K--GSWIKPGAAVIDV  238 (299)
Q Consensus       225 ~--~~~vk~gavVIDv  238 (299)
                      .  ..+++++.+||.+
T Consensus        81 ~~l~~~l~~~~~vvs~   96 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTI   96 (247)
T ss_dssp             ---CCSSCTTCEEEEC
T ss_pred             HHHHhhcCCCCEEEEe
Confidence            1  2346788888743

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.07  E-value=0.00064  Score=66.86  Aligned_cols=78  Identities=18%  Similarity=0.257  Sum_probs=58.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------------CChhhhccC---CcEEEEecCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------TDPESIVRE---ADIVIAAAGQA  221 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------~~l~~~~~~---ADIVIsa~g~p  221 (299)
                      -..+.++|.|||.|.+ |.++|..|++.|.+|++++++.                  .++.+.++.   +|+||.+++.+
T Consensus        11 ~~~~~~~IgvIGlG~M-G~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~   89 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVM-GRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAG   89 (480)
T ss_dssp             ----CBSEEEECCSHH-HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred             cccCCCeEEEEccHHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCH
Confidence            3467789999998886 9999999999999999998652                  245566665   99999999875


Q ss_pred             Cc----CC--CCccCCCeEEEEeecc
Q 022295          222 MM----IK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       222 ~~----i~--~~~vk~gavVIDvg~~  241 (299)
                      ..    +.  ...+++|.+|||++..
T Consensus        90 ~~v~~vl~~l~~~l~~g~iIId~s~g  115 (480)
T 2zyd_A           90 AGTDAAIDSLKPYLDKGDIIIDGGNT  115 (480)
T ss_dssp             SHHHHHHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHHHHHHhhcCCCCEEEECCCC
Confidence            31    21  2457889999998854

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.06  E-value=0.00045  Score=60.30  Aligned_cols=73  Identities=12%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------ChhhhccCCcEEEEecCCCC---cCC-CCcc
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------DPESIVREADIVIAAAGQAM---MIK-GSWI  229 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------~l~~~~~~ADIVIsa~g~p~---~i~-~~~v  229 (299)
                      ++++.|||.|.+ |+.++..|.+.|..|++++++..             ++.+.++++|+||.+++...   ++. ..++
T Consensus        28 ~~~I~iiG~G~~-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~~~~~~v~~l~~~~  106 (215)
T 2vns_A           28 APKVGILGSGDF-ARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREHYSSLCSLSDQL  106 (215)
T ss_dssp             -CCEEEECCSHH-HHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCGGGSGGGGGGHHHH
T ss_pred             CCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCChHHHHHHHHHHHhc
Confidence            468999997775 99999999999999999986521             34567889999999998432   121 1122


Q ss_pred             CCCeEEEEeecc
Q 022295          230 KPGAAVIDVGTN  241 (299)
Q Consensus       230 k~gavVIDvg~~  241 (299)
                       +++++||++..
T Consensus       107 -~~~~vv~~s~g  117 (215)
T 2vns_A          107 -AGKILVDVSNP  117 (215)
T ss_dssp             -TTCEEEECCCC
T ss_pred             -CCCEEEEeCCC
Confidence             78999999854

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.04  E-value=0.00042  Score=62.36  Aligned_cols=72  Identities=18%  Similarity=0.215  Sum_probs=55.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCC----------------CCChhhhcc-CCcEEEEecCCCCc---CC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSH----------------TTDPESIVR-EADIVIAAAGQAMM---IK  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~----------------t~~l~~~~~-~ADIVIsa~g~p~~---i~  225 (299)
                      ++|.|||.|.+ |..++..|.+.|.  +|++++++                +.++.+.++ +||+||.+++....   +.
T Consensus         2 ~~I~iIG~G~m-G~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (281)
T ss_dssp             CEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             cEEEEEecCHH-HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHHHH
Confidence            47999998775 9999999999987  89998754                235667788 99999999985432   21


Q ss_pred             --CCccCCCeEEEEeec
Q 022295          226 --GSWIKPGAAVIDVGT  240 (299)
Q Consensus       226 --~~~vk~gavVIDvg~  240 (299)
                        ..+++++++|+|++.
T Consensus        81 ~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           81 KLSYILSEDATVTDQGS   97 (281)
T ss_dssp             HHHHHSCTTCEEEECCS
T ss_pred             HHHhhCCCCcEEEECCC
Confidence              134688999999874

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.94  E-value=0.029  Score=51.98  Aligned_cols=187  Identities=14%  Similarity=0.119  Sum_probs=114.0

Q ss_pred             eccHHHHHHHHHHHHHHHHHHHhcCCC-Cc-----EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCC--C-H
Q 022295           12 IDGKAVAQTIRSEIAEEVRLLSEKYGK-VP-----GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV--S-E   82 (299)
Q Consensus        12 l~gk~~a~~i~~~~~~~v~~l~~~~~~-~P-----~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~-~   82 (299)
                      |+-..+.++=.+.|-+...++++.... .|     .++.+-.  .| |-.=--+=..++.++|.++.++.-++..  . -
T Consensus         5 ls~~dls~~ei~~ll~~A~~lk~~~~~~~~~L~gk~~~~lF~--e~-STRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kg   81 (299)
T 1pg5_A            5 ISAYNFSRDELEDIFALTDKYSKNLNDTRKILSGKTISIAFF--EP-STRTYLSFQKAIINLGGDVIGFSGEESTSVAKG   81 (299)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHSCCTTCCCTTTTCEEEEEES--SC-CHHHHHHHHHHHHHTTCEEEEEECC-------C
T ss_pred             CchhhCCHHHHHHHHHHHHHHHhccccCccccCCCEEEEEec--CC-CcchHHhHHHHHHHhCCEEEEeCCCCcccccCC
Confidence            333334333334444555566543111 12     4454443  33 4333335578999999998877533211  1 1


Q ss_pred             HHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhh
Q 022295           83 AELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRS  161 (299)
Q Consensus        83 ~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~  161 (299)
                      |-+.+.++-|+.-  +|+|.+-.|-...  ...+.+..       .+-.+|.|.      .+...||-+.+ ++.+.++.
T Consensus        82 Esl~DTarvls~~--~D~iviR~~~~~~--~~~la~~~-------~vPVINaG~------g~~~HPtQ~LaDl~Ti~e~~  144 (299)
T 1pg5_A           82 ENLADTIRMLNNY--SDGIVMRHKYDGA--SRFASEIS-------DIPVINAGD------GKHEHPTQAVIDIYTINKHF  144 (299)
T ss_dssp             CCHHHHHHHHHHH--CSEEEEEESSBTH--HHHHHHHC-------SSCEEEEEE------TTTBCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh--CCEEEEeCCChhH--HHHHHHhC-------CCCEEeCCC------CCCcCcHHHHHHHHHHHHHh
Confidence            2355555555442  5799998774322  23333322       234566432      35678999988 55555555


Q ss_pred             CCCcCCcEEEEEcCC--ccchHHHHHHHhhC-CCeEEEEcCC------------------CCChhhhccCCcEEEEecC
Q 022295          162 GVTIKGKRAVVVGRS--NIVGLPVSLLLLKA-DATVTIVHSH------------------TTDPESIVREADIVIAAAG  219 (299)
Q Consensus       162 ~~~l~gk~vvViG~s--~~vG~pla~lL~~~-gatVtv~~~~------------------t~~l~~~~~~ADIVIsa~g  219 (299)
                      | +++|++++++|-+  +-|.+.++.+|... |++|+++.-.                  +.++.+.+++||+|.+-.-
T Consensus       145 g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  222 (299)
T 1pg5_A          145 N-TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRI  222 (299)
T ss_dssp             S-CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECC
T ss_pred             C-CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCc
Confidence            4 8999999999985  45799999999999 9999999622                  2467789999999997654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.94  E-value=0.0014  Score=62.33  Aligned_cols=93  Identities=18%  Similarity=0.288  Sum_probs=67.3

Q ss_pred             ccCCHHHHHHH----HHhhCC-CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------Chhhhc
Q 022295          147 LPCTPKGCLEL----LKRSGV-TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------DPESIV  208 (299)
Q Consensus       147 ~PcT~~av~~l----l~~~~~-~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------~l~~~~  208 (299)
                      .++|.+|++..    +++.+. +++||+|+|+|.|++ |+.++..|...|++|.+++++..             +..+.+
T Consensus       150 ~~aTg~Gv~~~~~~~~~~~G~~~L~GktV~I~G~GnV-G~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell  228 (355)
T 1c1d_A          150 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAV-GGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVL  228 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGG
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhh
Confidence            46899987765    455688 899999999998875 99999999999999997765421             223444


Q ss_pred             c-CCcEEEEecCCCCcCCCCc---cCCCeEEEEeeccC
Q 022295          209 R-EADIVIAAAGQAMMIKGSW---IKPGAAVIDVGTNA  242 (299)
Q Consensus       209 ~-~ADIVIsa~g~p~~i~~~~---vk~gavVIDvg~~~  242 (299)
                      . ++||++.+ ...+.|+.+.   ++ ..+|+..+-.+
T Consensus       229 ~~~~DIliP~-A~~~~I~~~~~~~lk-~~iVie~AN~p  264 (355)
T 1c1d_A          229 STPCDVFAPC-AMGGVITTEVARTLD-CSVVAGAANNV  264 (355)
T ss_dssp             GCCCSEEEEC-SCSCCBCHHHHHHCC-CSEECCSCTTC
T ss_pred             cCccceecHh-HHHhhcCHHHHhhCC-CCEEEECCCCC
Confidence            4 88998854 4566777644   34 56777766433

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.92  E-value=0.00083  Score=51.47  Aligned_cols=73  Identities=23%  Similarity=0.236  Sum_probs=49.5

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCC---------------------ChhhhccCCcEEEEecCCCCc
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTT---------------------DPESIVREADIVIAAAGQAMM  223 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g~p~~  223 (299)
                      .+++++|+|.|. +|+.++..|.+.| .+|+++.++..                     ++.+.++++|+||.++|....
T Consensus         4 ~~~~v~I~G~G~-iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGK-IGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT   82 (118)
T ss_dssp             TCEEEEEECCSH-HHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH
T ss_pred             CcCeEEEECCCH-HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh
Confidence            468999999955 6999999999999 78999976521                     133456778888888753211


Q ss_pred             --CCCCccCCCeEEEEee
Q 022295          224 --IKGSWIKPGAAVIDVG  239 (299)
Q Consensus       224 --i~~~~vk~gavVIDvg  239 (299)
                        +-....+.|...+|++
T Consensus        83 ~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHHHHHHTTCEEECCC
T ss_pred             HHHHHHHHHhCCCEEEec
Confidence              1122234566666654

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.97  E-value=0.00014  Score=63.38  Aligned_cols=76  Identities=17%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------ChhhhccCCcEEEEecCCCCc---CCCCcc
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------DPESIVREADIVIAAAGQAMM---IKGSWI  229 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------~l~~~~~~ADIVIsa~g~p~~---i~~~~v  229 (299)
                      +.++++.|||.|.+ |..++..|.+.|..|++++++..            ++.+.++++|+||.++....+   +.-...
T Consensus        17 ~~~~~I~iIG~G~m-G~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~~~~~v~~l~~~   95 (201)
T 2yjz_A           17 EKQGVVCIFGTGDF-GKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHREHYDFLAELADS   95 (201)
Confidence            46678999998885 99999999999989998876432            334567889999999885432   211113


Q ss_pred             CCCeEEEEeecc
Q 022295          230 KPGAAVIDVGTN  241 (299)
Q Consensus       230 k~gavVIDvg~~  241 (299)
                      .++++|||+..-
T Consensus        96 ~~~~ivI~~~~G  107 (201)
T 2yjz_A           96 LKGRVLIDVSNN  107 (201)
Confidence            568899998743

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.91  E-value=0.00045  Score=61.62  Aligned_cols=75  Identities=15%  Similarity=0.213  Sum_probs=57.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCC---------------CChhhhccCCcEEEEecCCCC---cCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHT---------------TDPESIVREADIVIAAAGQAM---MIK  225 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~---~i~  225 (299)
                      +.+.+|.|||.|.+ |..++..|.+.|.. |++++++.               .++.+.++++|+||.+++...   ++.
T Consensus         8 ~~~m~i~iiG~G~m-G~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~   86 (266)
T 3d1l_A            8 IEDTPIVLIGAGNL-ATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQ   86 (266)
T ss_dssp             GGGCCEEEECCSHH-HHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCHH-HHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHHHH
Confidence            44568999998775 99999999998988 88887642               355677889999999998543   221


Q ss_pred             --CCccCCCeEEEEeec
Q 022295          226 --GSWIKPGAAVIDVGT  240 (299)
Q Consensus       226 --~~~vk~gavVIDvg~  240 (299)
                        ...++++++|+|+..
T Consensus        87 ~l~~~~~~~~ivv~~s~  103 (266)
T 3d1l_A           87 GIVEGKREEALMVHTAG  103 (266)
T ss_dssp             HHHTTCCTTCEEEECCT
T ss_pred             HHHhhcCCCcEEEECCC
Confidence              135678999999864

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.91  E-value=0.00069  Score=63.74  Aligned_cols=111  Identities=18%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------CChhhhccCCcEEEEecCCC-Cc-
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------TDPESIVREADIVIAAAGQA-MM-  223 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------~~l~~~~~~ADIVIsa~g~p-~~-  223 (299)
                      +..+|+|+|+|. ||++++..|.+ +..|+++.+..                    ..+.+.++++|+||+++|.. +. 
T Consensus        15 ~~mkilvlGaG~-vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~   92 (365)
T 3abi_A           15 RHMKVLILGAGN-IGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFK   92 (365)
T ss_dssp             -CCEEEEECCSH-HHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHH
T ss_pred             CccEEEEECCCH-HHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccch
Confidence            345799999966 69999998875 46888876431                    13567889999999998732 11 


Q ss_pred             CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCC-CCccHHHHHHHHHHHHH
Q 022295          224 IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVP-GGVGPMTVAMLLRNTLD  291 (299)
Q Consensus       224 i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVP-GGVGp~T~a~L~~n~v~  291 (299)
                      +-...++.|..++|+.+.+.+.       +     .+++.++.++. +=+| =|+-|=-..++...+++
T Consensus        93 v~~~~~~~g~~yvD~s~~~~~~-------~-----~l~~~a~~~g~-~~i~~~G~~PG~~~~~a~~~~~  148 (365)
T 3abi_A           93 SIKAAIKSKVDMVDVSFMPENP-------L-----ELRDEAEKAQV-TIVFDAGFAPGLSNILMGRIFQ  148 (365)
T ss_dssp             HHHHHHHHTCEEEECCCCSSCG-------G-----GGHHHHHHTTC-EEECCCBTTTBHHHHHHHHHHH
T ss_pred             HHHHHHhcCcceEeeeccchhh-------h-----hhhhhhccCCc-eeeecCCCCCchHHHHHHHHHH
Confidence            3445677799999998654221       0     13444455543 2233 25555556666665544

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.89  E-value=0.0035  Score=60.90  Aligned_cols=77  Identities=25%  Similarity=0.322  Sum_probs=56.0

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------CChhhh---------------ccCCcEE
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------TDPESI---------------VREADIV  214 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------~~l~~~---------------~~~ADIV  214 (299)
                      -.|.+..|||.|- ||.|+|..|++.|.+|+..+++.               +.+.+.               +++||+|
T Consensus         9 ~~~~~~~ViGlGy-vGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv   87 (431)
T 3ojo_A            9 HHGSKLTVVGLGY-IGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF   87 (431)
T ss_dssp             ---CEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred             ccCCccEEEeeCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence            3688999999877 59999999999999999998652               122211               4579999


Q ss_pred             EEecCCCCcCC-----------------CCccCCCeEEEEeeccC
Q 022295          215 IAAAGQAMMIK-----------------GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       215 Isa~g~p~~i~-----------------~~~vk~gavVIDvg~~~  242 (299)
                      |.++|.|.-.+                 .+.+++|++|||.++-+
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~  132 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIA  132 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCC
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCC
Confidence            99999875221                 13468899999977543

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.88  E-value=0.016  Score=53.93  Aligned_cols=179  Identities=13%  Similarity=0.093  Sum_probs=118.2

Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCH----HHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHH
Q 022295           41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSE----AELISKVHELNVMPDVHGILVQLPLPKHINEEKV  116 (299)
Q Consensus        41 ~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~----~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i  116 (299)
                      .++.+-.  .|+...-+ +=..++.++|.++.++.-. +.++    |-+.+.++-|+.=  +|+|.+-.|-.  -....+
T Consensus        46 ~l~~lF~--e~STRTR~-SFe~A~~~LGg~~i~l~~~-~~s~~~kgEsl~DTarvls~~--~D~iviR~~~~--~~~~~l  117 (308)
T 1ml4_A           46 ILATLFF--EPSTRTRL-SFESAMHRLGGAVIGFAEA-STSSVKKGESLRDTIKTVEQY--CDVIVIRHPKE--GAARLA  117 (308)
T ss_dssp             EEEEEES--SCCSHHHH-HHHHHHHHTTCEEEEESCG-GGSGGGGTCCHHHHHHHHTTT--CSEEEEEESST--THHHHH
T ss_pred             EEEEEec--CCCchHHH-HHHHHHHHhCCeEEEeCCC-ccccccCCCCHHHHHHHHHHh--CcEEEEecCCh--hHHHHH
Confidence            4554443  33333333 5578899999998877533 2122    4577788878764  78999987743  222344


Q ss_pred             HccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCC--ccchHHHHHHHhhCCCeE
Q 022295          117 LGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRS--NIVGLPVSLLLLKADATV  194 (299)
Q Consensus       117 ~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s--~~vG~pla~lL~~~gatV  194 (299)
                      .+..       .+-.+|.|-   |   +...||-+.+=+--++++..+++|++++++|-+  +-|.+.++.+|...|++|
T Consensus       118 a~~~-------~vPVINag~---g---~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v  184 (308)
T 1ml4_A          118 AEVA-------EVPVINAGD---G---SNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVEL  184 (308)
T ss_dssp             HHTC-------SSCEEEEEE---T---TSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEE
T ss_pred             HHhC-------CCCEEeCcc---C---CccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEE
Confidence            3322       234566431   2   456899999955445545458999999999985  347999999999999999


Q ss_pred             EEEcCC---------------------CCChhhhccCCcEEEEecCCC--------------Cc-CCCCcc---CCCeEE
Q 022295          195 TIVHSH---------------------TTDPESIVREADIVIAAAGQA--------------MM-IKGSWI---KPGAAV  235 (299)
Q Consensus       195 tv~~~~---------------------t~~l~~~~~~ADIVIsa~g~p--------------~~-i~~~~v---k~gavV  235 (299)
                      ++|.-.                     +.++.+.+++||+|.+-.-..              .+ ++.+.+   +|++++
T Consensus       185 ~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~  264 (308)
T 1ml4_A          185 YLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRI  264 (308)
T ss_dssp             EEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEE
T ss_pred             EEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEE
Confidence            999622                     246778999999999754211              12 566655   567777


Q ss_pred             EEeec
Q 022295          236 IDVGT  240 (299)
Q Consensus       236 IDvg~  240 (299)
                      +=.+.
T Consensus       265 mH~lP  269 (308)
T 1ml4_A          265 MHPLP  269 (308)
T ss_dssp             ECCSC
T ss_pred             ECCCC
Confidence            76653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.87  E-value=0.00084  Score=60.19  Aligned_cols=70  Identities=21%  Similarity=0.244  Sum_probs=53.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------CChhhhccCCcEEEEecCCCC---cCC--CC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------TDPESIVREADIVIAAAGQAM---MIK--GS  227 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~---~i~--~~  227 (299)
                      ++.|||.|.+ |..++..|.+.|.+|++++++.                .++.+. +++|+||.+++...   ++.  ..
T Consensus         2 ~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~   79 (279)
T 2f1k_A            2 KIGVVGLGLI-GASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIP   79 (279)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHGG
T ss_pred             EEEEEcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHHh
Confidence            6899998775 9999999999999999997642                245566 88999999998432   221  24


Q ss_pred             ccCCCeEEEEeec
Q 022295          228 WIKPGAAVIDVGT  240 (299)
Q Consensus       228 ~vk~gavVIDvg~  240 (299)
                      +++++++|+|++.
T Consensus        80 ~~~~~~~vv~~~~   92 (279)
T 2f1k_A           80 HLSPTAIVTDVAS   92 (279)
T ss_dssp             GSCTTCEEEECCS
T ss_pred             hCCCCCEEEECCC
Confidence            5788999999853

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.85  E-value=0.0013  Score=58.36  Aligned_cols=70  Identities=11%  Similarity=0.194  Sum_probs=52.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------------CCChhhhccCCcEEEEecCCCCcCCC--CccC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------------TTDPESIVREADIVIAAAGQAMMIKG--SWIK  230 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------------t~~l~~~~~~ADIVIsa~g~p~~i~~--~~vk  230 (299)
                      .++.|||.|.+ |.+++..|.+.|..|++++++               +.++.+.++++|+||.+++ |..+..  ..++
T Consensus         4 m~i~iiG~G~m-G~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~~l~   81 (259)
T 2ahr_A            4 MKIGIIGVGKM-ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPLH   81 (259)
T ss_dssp             CEEEEECCSHH-HHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTSC
T ss_pred             cEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHHHhc
Confidence            47999998775 999999999999899999764               2356677889999999998 432110  1245


Q ss_pred             CCeEEEEee
Q 022295          231 PGAAVIDVG  239 (299)
Q Consensus       231 ~gavVIDvg  239 (299)
                      +|.+++|..
T Consensus        82 ~~~~vv~~~   90 (259)
T 2ahr_A           82 FKQPIISMA   90 (259)
T ss_dssp             CCSCEEECC
T ss_pred             cCCEEEEeC
Confidence            778888873

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.84  E-value=0.0012  Score=64.30  Aligned_cols=72  Identities=26%  Similarity=0.321  Sum_probs=55.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------------CChhhhccCCcE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------------TDPESIVREADI  213 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------------~~l~~~~~~ADI  213 (299)
                      .+|.|||.|. +|.++|..|++.|.+|++++++.                                  .++.+.+++||+
T Consensus         3 mkI~VIG~G~-vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDv   81 (450)
T 3gg2_A            3 LDIAVVGIGY-VGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADI   81 (450)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSE
T ss_pred             CEEEEECcCH-HHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCE
Confidence            4799999876 59999999999999999997541                                  244566889999


Q ss_pred             EEEecCCCC---------cCC------CCccCCCeEEEEeec
Q 022295          214 VIAAAGQAM---------MIK------GSWIKPGAAVIDVGT  240 (299)
Q Consensus       214 VIsa~g~p~---------~i~------~~~vk~gavVIDvg~  240 (299)
                      ||.+++.|.         .+.      ...+++|++||+.+.
T Consensus        82 ViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           82 IFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence            999999872         110      134678999998764

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.81  E-value=0.0049  Score=60.08  Aligned_cols=53  Identities=21%  Similarity=0.309  Sum_probs=44.5

Q ss_pred             cccCCHHHHHHH----HHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEcC
Q 022295          146 FLPCTPKGCLEL----LKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVHS  199 (299)
Q Consensus       146 ~~PcT~~av~~l----l~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~~  199 (299)
                      ..++|.+|++..    +++.|.+++|++|+|.|.|+ ||..++.+|.+.|++|+ ++++
T Consensus       210 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqGfGn-VG~~~a~~L~e~GakvVavsD~  267 (440)
T 3aog_A          210 RRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGN-VGNAAARAFHDHGARVVAVQDH  267 (440)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTCCSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCcchHHHHHHHHHHHHHhcCCCccCCEEEEeccCH-HHHHHHHHHHHCCCEEEEEEcC
Confidence            457899987755    55679999999999999777 59999999999999876 7765

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.81  E-value=0.0018  Score=60.81  Aligned_cols=95  Identities=19%  Similarity=0.200  Sum_probs=68.8

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---------------------h
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---------------------P  204 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---------------------l  204 (299)
                      .+||.....+..|++.++...|++|+|+|+|+ ||..+++++...|++|+++.+....                     +
T Consensus       167 ~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~  245 (366)
T 1yqd_A          167 PLLCAGITVYSPLKYFGLDEPGKHIGIVGLGG-LGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQM  245 (366)
T ss_dssp             GGGTHHHHHHHHHHHTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHH
T ss_pred             hhhhhHHHHHHHHHhcCcCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHH
Confidence            45666666777787777655899999999765 6999999999999998877643221                     1


Q ss_pred             hhhccCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          205 ESIVREADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       205 ~~~~~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                      .+....+|+||.++|.+..+.  -+.++++..++.+|..
T Consensus       246 ~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          246 QAAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             HHTTTCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCC
T ss_pred             HHhhCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccC
Confidence            122345799999999765432  2557888888888864

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.79  E-value=0.017  Score=54.17  Aligned_cols=208  Identities=16%  Similarity=0.170  Sum_probs=127.6

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCC---CCc-EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---H
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYG---KVP-GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---E   82 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~---~~P-~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~   82 (299)
                      .+|+-..+..+=.+.|-+...+|++...   .+- .++.+ + ..|+...-+ +=..++.++|.++.++.- .+.+   -
T Consensus        15 hllsi~dls~~ei~~ll~~A~~lk~~~~~~~L~gk~la~l-F-~e~STRTR~-SFE~A~~~LGg~~i~l~~-~~ss~~kg   90 (323)
T 3gd5_A           15 DLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLV-F-LKASTRTRV-SFTVAMYQLGGQVIDLSP-SNTQVGRG   90 (323)
T ss_dssp             CBSSGGGSCHHHHHHHHHHHHHHHHTSSCCCCTTCEEEEE-E-SSCCHHHHH-HHHHHHHHTTCEEEEC-----------
T ss_pred             CccchHhCCHHHHHHHHHHHHHHHhcccccccCCCEEEEE-e-cCCCcchHh-hHHHHHHHcCCeEEEeCc-ccccCCCC
Confidence            4555555554434445455555654321   122 44444 3 234333333 457889999999887642 2221   2


Q ss_pred             HHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhh
Q 022295           83 AELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRS  161 (299)
Q Consensus        83 ~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~  161 (299)
                      |-+.+.++-|+.-  +|+|.+-.|-...+  ..+.+.    -+   +-.+|.|       .+...||=+.+ ++.+.++.
T Consensus        91 Esl~DTarvLs~~--~D~iviR~~~~~~~--~~lA~~----~~---vPVINag-------~~~~HPtQaLaDl~Ti~e~~  152 (323)
T 3gd5_A           91 EPVRDTARVLGRY--VDGLAIRTFAQTEL--EEYAHY----AG---IPVINAL-------TDHEHPCQVVADLLTIRENF  152 (323)
T ss_dssp             CCHHHHHHHHTTT--CSEEEEECSSHHHH--HHHHHH----HC---SCEEEEE-------CSSCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh--CCEEEEecCChhHH--HHHHHh----CC---CCEEeCC-------CCCCCcHHHHHHHHHHHHHh
Confidence            4577888888774  88999987732111  222221    12   3456654       24568998888 55555565


Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCcEEEE
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREADIVIA  216 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~ADIVIs  216 (299)
                      | +++|++|+++|-++-|.+.++.++...|++|+++.-.                         +.++.+.+++||+|.+
T Consensus       153 g-~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt  231 (323)
T 3gd5_A          153 G-RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYT  231 (323)
T ss_dssp             S-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEE
T ss_pred             C-CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEE
Confidence            5 7999999999998889999999999999999998532                         2356788999999996


Q ss_pred             ec----CCC-----------Cc-CCCCcc---CCCeEEEEeec
Q 022295          217 AA----GQA-----------MM-IKGSWI---KPGAAVIDVGT  240 (299)
Q Consensus       217 a~----g~p-----------~~-i~~~~v---k~gavVIDvg~  240 (299)
                      -.    |..           .+ ++.+.+   +|+++++=.+.
T Consensus       232 ~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclP  274 (323)
T 3gd5_A          232 DVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLP  274 (323)
T ss_dssp             CCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred             eceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCC
Confidence            54    211           12 454443   57788777663

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.76  E-value=0.0018  Score=56.04  Aligned_cols=56  Identities=20%  Similarity=0.282  Sum_probs=46.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCCC---------------------ChhhhccCCcEEEEecCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHTT---------------------DPESIVREADIVIAAAGQ  220 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g~  220 (299)
                      +++|+++|.|+++-+|+.++..|+++|+  +|+++.++..                     ++.+.++..|+||..+|.
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            5789999999998899999999999999  9999876532                     233556778999988885

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.75  E-value=0.0021  Score=62.70  Aligned_cols=74  Identities=20%  Similarity=0.259  Sum_probs=55.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhC--CCeEEEEcCCC---------------------------------CChhhhccCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA--DATVTIVHSHT---------------------------------TDPESIVREAD  212 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~--gatVtv~~~~t---------------------------------~~l~~~~~~AD  212 (299)
                      .+|.|||.|. +|.++|..|++.  |.+|++++++.                                 .++.+.+++||
T Consensus         6 mkI~VIG~G~-mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD   84 (467)
T 2q3e_A            6 KKICCIGAGY-VGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD   84 (467)
T ss_dssp             CEEEEECCST-THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             cEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence            4899999877 599999999998  78999997541                                 12334567899


Q ss_pred             EEEEecCCCCcCC--------------------CCccCCCeEEEEeeccC
Q 022295          213 IVIAAAGQAMMIK--------------------GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       213 IVIsa~g~p~~i~--------------------~~~vk~gavVIDvg~~~  242 (299)
                      +||.+++.|.-.+                    ...+++|++|||.+..+
T Consensus        85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  134 (467)
T 2q3e_A           85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVP  134 (467)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCC
T ss_pred             EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCC
Confidence            9999998765321                    12467899999976543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.73  E-value=0.0012  Score=61.14  Aligned_cols=70  Identities=13%  Similarity=0.219  Sum_probs=53.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC----CeEEEEcCCCC----------------ChhhhccCCcEEEEecCCCCcC---
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD----ATVTIVHSHTT----------------DPESIVREADIVIAAAGQAMMI---  224 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g----atVtv~~~~t~----------------~l~~~~~~ADIVIsa~g~p~~i---  224 (299)
                      .+|.|||.|.+ |.+++..|.+.|    ..|++++++..                +..+.+++||+||.++. |..+   
T Consensus        23 mkI~iIG~G~m-G~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~v  100 (322)
T 2izz_A           23 MSVGFIGAGQL-AFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPFI  100 (322)
T ss_dssp             CCEEEESCSHH-HHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHHH
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHHH
Confidence            57999998775 999999999998    68999987542                34466788999999997 4321   


Q ss_pred             -C--CCccCCCeEEEEee
Q 022295          225 -K--GSWIKPGAAVIDVG  239 (299)
Q Consensus       225 -~--~~~vk~gavVIDvg  239 (299)
                       .  ...++++.+|||+.
T Consensus       101 l~~l~~~l~~~~ivvs~s  118 (322)
T 2izz_A          101 LDEIGADIEDRHIVVSCA  118 (322)
T ss_dssp             HHHHGGGCCTTCEEEECC
T ss_pred             HHHHHhhcCCCCEEEEeC
Confidence             1  23467889999984

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.72  E-value=0.0015  Score=64.40  Aligned_cols=74  Identities=15%  Similarity=0.218  Sum_probs=57.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhhhcc---CCcEEEEecCCCCc--
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPESIVR---EADIVIAAAGQAMM--  223 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~~~~---~ADIVIsa~g~p~~--  223 (299)
                      ++|.|||.|.+ |.++|..|.+.|.+|++++++.                   .++.+.+.   ++|+||.+++.+..  
T Consensus         5 ~kIgiIGlG~M-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            5 ADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CEEEEEChhHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            57999998886 9999999999999999998652                   24445544   59999999987532  


Q ss_pred             --CC--CCccCCCeEEEEeeccC
Q 022295          224 --IK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       224 --i~--~~~vk~gavVIDvg~~~  242 (299)
                        +.  ...+++|.+|||.+...
T Consensus        84 ~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           84 DFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             HHHHHHGGGCCTTCEEEECSCCC
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCC
Confidence              21  24578999999998643

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.70  E-value=0.0019  Score=63.07  Aligned_cols=73  Identities=22%  Similarity=0.262  Sum_probs=56.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------------CChhhhccCCcE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------------TDPESIVREADI  213 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------------~~l~~~~~~ADI  213 (299)
                      -++.|||.|- +|.|+|..|++.|.+|++++++.                                  .++.+.+++||+
T Consensus         9 ~~~~vIGlG~-vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            9 VRIAMIGTGY-VGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             eEEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            5899999876 59999999999999999997542                                  244567889999


Q ss_pred             EEEecCCCC----------cCC------CCccCCCeEEEEeecc
Q 022295          214 VIAAAGQAM----------MIK------GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       214 VIsa~g~p~----------~i~------~~~vk~gavVIDvg~~  241 (299)
                      ||.+++.|.          .+.      ...+++|++||+.+.-
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv  131 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV  131 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred             EEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            999988773          121      1356889999997643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.68  E-value=0.0011  Score=52.52  Aligned_cols=56  Identities=27%  Similarity=0.331  Sum_probs=41.3

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------------C---hhhh-ccCCcEEEEecCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------------D---PESI-VREADIVIAAAGQA  221 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------------~---l~~~-~~~ADIVIsa~g~p  221 (299)
                      +++++++|+|.|. +|+.++..|.+.|++|+++.++..                  +   +.+. +.++|+||.++|.+
T Consensus         4 ~~~~~v~I~G~G~-iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            4 IKNKQFAVIGLGR-FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             --CCSEEEECCSH-HHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CcCCcEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            4678999999865 699999999999999988865310                  1   1122 56789999988865

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.68  E-value=0.02  Score=53.93  Aligned_cols=177  Identities=12%  Similarity=0.139  Sum_probs=111.5

Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHH
Q 022295           41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVL  117 (299)
Q Consensus        41 ~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~  117 (299)
                      .++.+ + ..|+...-+ +=..++.++|.++.++.- .+.+   -|-+.+.++-|+.-  +|+|.+-.|-.  -....+.
T Consensus        65 ~la~l-F-~e~STRTR~-SFE~A~~~LGg~~i~l~~-~~ssl~kgEsl~DTarvLs~~--~D~IviR~~~~--~~~~~lA  136 (339)
T 4a8t_A           65 SLGMI-F-QQSSTRTRV-SFETAMEQLGGHGEYLAP-GQIQLGGHETIEDTSRVLSRL--VDILMARVERH--HSIVDLA  136 (339)
T ss_dssp             EEEEE-E-SSCCSHHHH-HHHHHHHHTTCEEEEECC-C-CCSSSSSCHHHHHHHHHHH--CSEEEEECSSH--HHHHHHH
T ss_pred             eEEEE-e-cCCCchHHH-HHHHHHHHcCCeEEEeCc-ccccCCCCcCHHHHHHHHHHh--CCEEEEecCcH--HHHHHHH
Confidence            44444 3 244444444 457889999999987642 2211   12355555555442  68999887632  1112222


Q ss_pred             ccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhh--CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeE
Q 022295          118 GEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRS--GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATV  194 (299)
Q Consensus       118 ~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~--~~~l~gk~vvViG~s~~vG~pla~lL~~~gatV  194 (299)
                      +..       ++-.+|.|       .+...||=+.+ ++.+.++.  |.+++|++|+++|-++-|.+.++.+|...|++|
T Consensus       137 ~~~-------~vPVINag-------~~~~HPtQaLaDl~Ti~e~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v  202 (339)
T 4a8t_A          137 NCA-------TIPVINGM-------SDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNF  202 (339)
T ss_dssp             HHC-------SSCEEECC-------CSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESSCCHHHHHHHHHHHHTTCEE
T ss_pred             HhC-------CCCEEECC-------CCCcCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEE
Confidence            221       23456653       24568998888 55555555  437999999999998889999999999999999


Q ss_pred             EEEcCC-------------------------CCChhhhccCCcEEEEec----CC-------------CCc-CCCCcc--
Q 022295          195 TIVHSH-------------------------TTDPESIVREADIVIAAA----GQ-------------AMM-IKGSWI--  229 (299)
Q Consensus       195 tv~~~~-------------------------t~~l~~~~~~ADIVIsa~----g~-------------p~~-i~~~~v--  229 (299)
                      +++.-.                         +.++. .+++||+|.+-+    |.             |.+ |+.+.+  
T Consensus       203 ~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~  281 (339)
T 4a8t_A          203 VHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDR  281 (339)
T ss_dssp             EEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHH
T ss_pred             EEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhccccccCHHHHHh
Confidence            998632                         23555 789999999743    31             112 444443  


Q ss_pred             -CCCeEEEEeec
Q 022295          230 -KPGAAVIDVGT  240 (299)
Q Consensus       230 -k~gavVIDvg~  240 (299)
                       +|+++++=.+.
T Consensus       282 ak~dai~mHcLP  293 (339)
T 4a8t_A          282 AGANCKFMHCLP  293 (339)
T ss_dssp             HCTTCEEEECSC
T ss_pred             cCCCcEEECCCC
Confidence             57888887764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.64  E-value=0.002  Score=58.96  Aligned_cols=68  Identities=16%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcC--CC-------------------------C--ChhhhccCCcEEEEecC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHS--HT-------------------------T--DPESIVREADIVIAAAG  219 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~--~t-------------------------~--~l~~~~~~ADIVIsa~g  219 (299)
                      +|.|||.|.+ |.+++..|.+.|.+|+++++  +.                         .  ++.+.++++|+||.+++
T Consensus         2 ~I~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            2 IVSILGAGAM-GSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             EEEEESCCHH-HHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECcCHH-HHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            6899998775 99999999999999999987  31                         1  34455788999999998


Q ss_pred             CCCc------CCCCccCCCeEEEEee
Q 022295          220 QAMM------IKGSWIKPGAAVIDVG  239 (299)
Q Consensus       220 ~p~~------i~~~~vk~gavVIDvg  239 (299)
                      .+..      +.+  ++++++|||+.
T Consensus        81 ~~~~~~v~~~i~~--l~~~~~vv~~~  104 (335)
T 1txg_A           81 TDGVLPVMSRILP--YLKDQYIVLIS  104 (335)
T ss_dssp             GGGHHHHHHHHTT--TCCSCEEEECC
T ss_pred             hHHHHHHHHHHhc--CCCCCEEEEEc
Confidence            6542      233  78899999984

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.0019  Score=63.86  Aligned_cols=73  Identities=18%  Similarity=0.194  Sum_probs=56.3

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhhhccC---CcEEEEecCCCCc-
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPESIVRE---ADIVIAAAGQAMM-  223 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~~~~~---ADIVIsa~g~p~~-  223 (299)
                      .++|.|||.|.+ |.++|..|++.|.+|++++++.                   .++.+.++.   +|+||.+++.+.. 
T Consensus        10 ~~~IgvIGlG~M-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   88 (497)
T 2p4q_A           10 SADFGLIGLAVM-GQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV   88 (497)
T ss_dssp             CCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred             CCCEEEEeeHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence            357999998886 9999999999999999998642                   244555555   9999999987531 


Q ss_pred             ---CC--CCccCCCeEEEEeec
Q 022295          224 ---IK--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       224 ---i~--~~~vk~gavVIDvg~  240 (299)
                         +.  ...+++|.+|||++.
T Consensus        89 ~~vl~~l~~~l~~g~iIId~s~  110 (497)
T 2p4q_A           89 DALINQIVPLLEKGDIIIDGGN  110 (497)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSC
T ss_pred             HHHHHHHHHhCCCCCEEEECCC
Confidence               21  245788999999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.63  E-value=0.00087  Score=62.06  Aligned_cols=95  Identities=12%  Similarity=0.042  Sum_probs=69.2

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------Chhhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------DPESI  207 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------~l~~~  207 (299)
                      +||.+..++..+.+..---.|++|+|+|+|+.+|..+++++...||+|+.+.++..                   ++.+.
T Consensus       125 l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~  204 (340)
T 3gms_A          125 MYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYET  204 (340)
T ss_dssp             SSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             hcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHH
Confidence            46677777777754444457999999999977899999999999999888765432                   22221


Q ss_pred             ----c--cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          208 ----V--READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       208 ----~--~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                          +  +..|+||.++|.+... ..+.++++..++.+|..
T Consensus       205 ~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          205 VMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             HHHHTTTSCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             HHHHhCCCCCcEEEECCCChhHHHHHHHhcCCCEEEEEeec
Confidence                1  2589999999976532 22678898899999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.63  E-value=0.0076  Score=59.28  Aligned_cols=75  Identities=25%  Similarity=0.276  Sum_probs=56.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhC-CC-eEEEEcCCCC----C---h--------------------------------hh
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA-DA-TVTIVHSHTT----D---P--------------------------------ES  206 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~-ga-tVtv~~~~t~----~---l--------------------------------~~  206 (299)
                      ++|.|||.|- +|.|+|..|++. |. +|++++++..    .   +                                .+
T Consensus        19 mkIaVIGlG~-mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~e   97 (478)
T 3g79_A           19 KKIGVLGMGY-VGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFS   97 (478)
T ss_dssp             CEEEEECCST-THHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGG
T ss_pred             CEEEEECcCH-HHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHH
Confidence            6899999877 599999999999 99 9999986543    0   0                                24


Q ss_pred             hccCCcEEEEecCCCCcCC----C-------------CccCCCeEEEEeeccCC
Q 022295          207 IVREADIVIAAAGQAMMIK----G-------------SWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       207 ~~~~ADIVIsa~g~p~~i~----~-------------~~vk~gavVIDvg~~~~  243 (299)
                      .+++||+||.+++.|.-..    +             ..+++|++|||..+-+.
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~p  151 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITP  151 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCT
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCCh
Confidence            4778999999999874211    1             23688999999875443

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.63  E-value=0.075  Score=49.34  Aligned_cols=178  Identities=14%  Similarity=0.148  Sum_probs=113.8

Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHH
Q 022295           41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVL  117 (299)
Q Consensus        41 ~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~  117 (299)
                      .++.+-.  .|+...-+ +=..++.++|.++.++.- .+.+   -|-+.+.++-|+.-  +|+|.+-.|-...+  ..+.
T Consensus        38 ~la~lF~--e~STRTR~-SFe~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~~~~--~~lA  109 (307)
T 3tpf_A           38 TLAMIFE--KNSTRTRM-AFELAITELGGKALFLSS-NDLQLSRGEPVKDTARVIGAM--VDFVMMRVNKHETL--LEFA  109 (307)
T ss_dssp             EEEEEES--SCCHHHHH-HHHHHHHHTTCEEEEECT-TTCCTTTSSCHHHHHHHHHHH--SSEEEEECSCHHHH--HHHH
T ss_pred             EEEEEec--CCCcchHH-hHHHHHHHcCCeEEEcCc-ccccCCCCCCHHHHHHHHHHh--CCEEEEecCChHHH--HHHH
Confidence            4444432  33333333 457889999999887752 2221   23455556555543  68999987632111  2222


Q ss_pred             ccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC-CcEEEEEcCCccchHHHHHHHhhCCCeEEE
Q 022295          118 GEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK-GKRAVVVGRSNIVGLPVSLLLLKADATVTI  196 (299)
Q Consensus       118 ~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~-gk~vvViG~s~~vG~pla~lL~~~gatVtv  196 (299)
                      +..       ++-.+|.|       .+...||=+.+=+--++++..+++ |++++++|-++.|.+.++.+|...|++|++
T Consensus       110 ~~~-------~vPVINag-------~~~~HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~  175 (307)
T 3tpf_A          110 RYS-------KAPVINAL-------SELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISI  175 (307)
T ss_dssp             HHC-------SSCEEEEE-------CSSCCHHHHHHHHHHHHHTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             HhC-------CCCEEeCC-------CCCcCcHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEE
Confidence            221       23456754       235689988884444444444899 999999999888999999999999999999


Q ss_pred             EcCC-------------------------CCChhhhccCCcEEEEec----CCC-----------Cc-CCCCcc---CCC
Q 022295          197 VHSH-------------------------TTDPESIVREADIVIAAA----GQA-----------MM-IKGSWI---KPG  232 (299)
Q Consensus       197 ~~~~-------------------------t~~l~~~~~~ADIVIsa~----g~p-----------~~-i~~~~v---k~g  232 (299)
                      +.-.                         +.++.+.+++||+|.+-.    |..           .+ |+.+.+   +|+
T Consensus       176 ~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~  255 (307)
T 3tpf_A          176 AMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKD  255 (307)
T ss_dssp             ECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTT
T ss_pred             ECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCC
Confidence            8632                         236668899999999765    311           12 555544   577


Q ss_pred             eEEEEeec
Q 022295          233 AAVIDVGT  240 (299)
Q Consensus       233 avVIDvg~  240 (299)
                      ++++=.+.
T Consensus       256 ai~mH~lP  263 (307)
T 3tpf_A          256 AILLHCLP  263 (307)
T ss_dssp             CEEEECSC
T ss_pred             cEEECCCC
Confidence            88877664

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.62  E-value=0.0028  Score=57.74  Aligned_cols=70  Identities=21%  Similarity=0.348  Sum_probs=52.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------------------------------CCh
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------------------------------TDP  204 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------------------------------~~l  204 (299)
                      ++|.|||.|.+ |.++|..|++.|..|++++++.                                           .++
T Consensus        16 ~~I~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~   94 (302)
T 1f0y_A           16 KHVTVIGGGLM-GAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   94 (302)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence            68999998775 9999999999999999997641                                           234


Q ss_pred             hhhccCCcEEEEecCCCC-----cCC--CCccCCCeEEEEe
Q 022295          205 ESIVREADIVIAAAGQAM-----MIK--GSWIKPGAAVIDV  238 (299)
Q Consensus       205 ~~~~~~ADIVIsa~g~p~-----~i~--~~~vk~gavVIDv  238 (299)
                      .+.+++||+||.+++...     ++.  ...++++++++..
T Consensus        95 ~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~  135 (302)
T 1f0y_A           95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASN  135 (302)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred             HHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEC
Confidence            446789999999997532     111  2356788888764

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.61  E-value=0.12  Score=47.95  Aligned_cols=181  Identities=15%  Similarity=0.147  Sum_probs=113.7

Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCC-CCC-HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHc
Q 022295           41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPE-QVS-EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLG  118 (299)
Q Consensus        41 ~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~-~~~-~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~  118 (299)
                      +....++- .|+...-+ +=..++.++|.++.++.-.. ... -|-+.+.++-|+. -.+|+|.+-.|-...+  +.+.+
T Consensus        37 k~la~lF~-e~STRTR~-SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~-~~~D~iviR~~~~~~~--~~la~  111 (304)
T 3r7f_A           37 KFAANLFF-EPSTRTRF-SFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLES-IGVDVCVIRHSEDEYY--EELVS  111 (304)
T ss_dssp             CEEEEEES-SCCSHHHH-HHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHH-HTCCEEEEECSSTTCH--HHHHH
T ss_pred             CEEEEEec-CCChhHHH-hHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHH-hcCCEEEEecCChhHH--HHHHH
Confidence            33334442 34444433 45788999999988774211 111 1334555554443 1367999988744333  44433


Q ss_pred             cCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC--ccchHHHHHHHhhCCCeEE
Q 022295          119 EISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS--NIVGLPVSLLLLKADATVT  195 (299)
Q Consensus       119 ~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s--~~vG~pla~lL~~~gatVt  195 (299)
                      ..    +   +-.+|.|      ..+...||=+.+ ++.+.++.| +++|.+|+++|-+  +-|.+.++.+|...|++|+
T Consensus       112 ~~----~---vPVINag------dg~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~  177 (304)
T 3r7f_A          112 QV----N---IPILNAG------DGCGQHPTQSLLDLMTIYEEFN-TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVL  177 (304)
T ss_dssp             HC----S---SCEEESC------CTTSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEE
T ss_pred             hC----C---CCEEeCC------CCCCcCcHHHHHHHHHHHHHhC-CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEE
Confidence            22    2   3345642      124578998888 555555555 7999999999976  3479999999999999999


Q ss_pred             EEcCC-----------CCChhhhccCCcEEEEecCCC----------C----c-CCCCcc---CCCeEEEEeec
Q 022295          196 IVHSH-----------TTDPESIVREADIVIAAAGQA----------M----M-IKGSWI---KPGAAVIDVGT  240 (299)
Q Consensus       196 v~~~~-----------t~~l~~~~~~ADIVIsa~g~p----------~----~-i~~~~v---k~gavVIDvg~  240 (299)
                      ++.-.           +.++.+.++.||+|.+-....          .    + ++.+.+   +|+++++=.+.
T Consensus       178 ~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHclP  251 (304)
T 3r7f_A          178 FSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPAP  251 (304)
T ss_dssp             EESCGGGSCTTCSSCEECCHHHHHHHCSEEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEECCSC
T ss_pred             EECCCccCcchhhcCccCCHHHHhCCCCEEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEECCCC
Confidence            98532           347788999999999854310          1    1 454443   57888876663

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.60  E-value=0.0039  Score=57.79  Aligned_cols=95  Identities=19%  Similarity=0.176  Sum_probs=68.3

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhh---------------hccC
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPES---------------IVRE  210 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~---------------~~~~  210 (299)
                      .+||.....+..|++.++ -.|.+|+|+|+|. ||..+++++...|++|+.+.+....++.               ..+.
T Consensus       157 ~l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~  234 (348)
T 3two_A          157 PLLCAGITTYSPLKFSKV-TKGTKVGVAGFGG-LGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEE  234 (348)
T ss_dssp             GGGTHHHHHHHHHHHTTC-CTTCEEEEESCSH-HHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSC
T ss_pred             hhhhhHHHHHHHHHhcCC-CCCCEEEEECCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcC
Confidence            356666666777776643 4699999999865 6999999999999999887655433321               1115


Q ss_pred             CcEEEEecCCCCcC--CCCccCCCeEEEEeeccC
Q 022295          211 ADIVIAAAGQAMMI--KGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       211 ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~~  242 (299)
                      +|+||.++|.+..+  --+.++++..++.+|...
T Consensus       235 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          235 LDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             EEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCC
T ss_pred             CCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCC
Confidence            78999999987443  236788888888888653

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.59  E-value=0.002  Score=62.72  Aligned_cols=80  Identities=26%  Similarity=0.317  Sum_probs=56.0

Q ss_pred             hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------------------------CCChhhh
Q 022295          160 RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------------------------TTDPESI  207 (299)
Q Consensus       160 ~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------------------------t~~l~~~  207 (299)
                      ..+....-.+|.|||.|. +|.++|..|++ |.+|++++++                                |.++.+.
T Consensus        29 ~~~r~~~~mkIaVIGlG~-mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea  106 (432)
T 3pid_A           29 QMGRGSEFMKITISGTGY-VGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDA  106 (432)
T ss_dssp             ------CCCEEEEECCSH-HHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred             ccccccCCCEEEEECcCH-HHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHH
Confidence            333444446899999877 59999999987 9999999753                                1245577


Q ss_pred             ccCCcEEEEecCCCC----------cCC------CCccCCCeEEEEeeccC
Q 022295          208 VREADIVIAAAGQAM----------MIK------GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       208 ~~~ADIVIsa~g~p~----------~i~------~~~vk~gavVIDvg~~~  242 (299)
                      +++||+||.+++.|.          .+.      .. +++|++|||.+.-+
T Consensus       107 ~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~  156 (432)
T 3pid_A          107 YRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIP  156 (432)
T ss_dssp             HTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCC
T ss_pred             HhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCC
Confidence            889999999998762          110      12 68999999876543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.58  E-value=0.0013  Score=64.20  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------------ChhhhccCCcEEEEecCCC-
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------------DPESIVREADIVIAAAGQA-  221 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------------~l~~~~~~ADIVIsa~g~p-  221 (299)
                      ++|+|+|+|+|+ +|+.++..|++.|+.|++++++..                       ++.+.+.++|+||+++|.. 
T Consensus         2 ~~k~VlViGaG~-iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~   80 (450)
T 1ff9_A            2 ATKSVLMLGSGF-VTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   80 (450)
T ss_dssp             CCCEEEEECCST-THHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--C
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCcccc
Confidence            478999999776 599999999999999999976410                       1235567899999999853 


Q ss_pred             Cc-CCCCccCCCeEEEEeec
Q 022295          222 MM-IKGSWIKPGAAVIDVGT  240 (299)
Q Consensus       222 ~~-i~~~~vk~gavVIDvg~  240 (299)
                      +. +..+.+++|..++|..+
T Consensus        81 ~~~i~~a~l~~g~~vvd~~~  100 (450)
T 1ff9_A           81 HATVIKSAIRQKKHVVTTSY  100 (450)
T ss_dssp             HHHHHHHHHHHTCEEEESSC
T ss_pred             chHHHHHHHhCCCeEEEeec
Confidence            21 34456777888888754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.58  E-value=0.0011  Score=59.89  Aligned_cols=72  Identities=18%  Similarity=0.368  Sum_probs=54.7

Q ss_pred             cEEEEEcC-CccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCCCC---cCC--CCc
Q 022295          168 KRAVVVGR-SNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQAM---MIK--GSW  228 (299)
Q Consensus       168 k~vvViG~-s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~p~---~i~--~~~  228 (299)
                      ++|.|||. |. +|.+++..|.+.|.+|++++++.             .+..+.+++||+||.+++...   ++.  ...
T Consensus        12 m~I~iIG~tG~-mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~   90 (286)
T 3c24_A           12 KTVAILGAGGK-MGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNIIEKVAEDIVPR   90 (286)
T ss_dssp             CEEEEETTTSH-HHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCH-HHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchHHHHHHHHHHHh
Confidence            58999999 55 59999999999999999997652             134567889999999997433   121  134


Q ss_pred             cCCCeEEEEeec
Q 022295          229 IKPGAAVIDVGT  240 (299)
Q Consensus       229 vk~gavVIDvg~  240 (299)
                      ++++++|+|+..
T Consensus        91 l~~~~ivv~~s~  102 (286)
T 3c24_A           91 VRPGTIVLILDA  102 (286)
T ss_dssp             SCTTCEEEESCS
T ss_pred             CCCCCEEEECCC
Confidence            678999999654

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=96.58  E-value=0.0097  Score=54.96  Aligned_cols=188  Identities=16%  Similarity=0.168  Sum_probs=116.9

Q ss_pred             eccHHHHHHHHHHHHHHHHHHHhcCC--CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCC-CC-HHHHHH
Q 022295           12 IDGKAVAQTIRSEIAEEVRLLSEKYG--KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-VS-EAELIS   87 (299)
Q Consensus        12 l~gk~~a~~i~~~~~~~v~~l~~~~~--~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~-~~el~~   87 (299)
                      |+-..+.++=.+.|-+...++++...  .+-+.. .++- . .|-.=--+=..++.++|.++.++.-... .. -|-+.+
T Consensus         5 ls~~dls~~ei~~ll~~A~~lk~~~~~~L~gk~~-~lF~-e-~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~D   81 (291)
T 3d6n_B            5 ISSLDLTREEVEEILKYAKEFKEGKEETIKASAV-LFFS-E-PSTRTRLSFEKAARELGIETYLVSGSESSTVKGESFFD   81 (291)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHTTCCCCCCCEEE-EEES-S-CCHHHHHHHHHHHHHTTCEEEEEETTTTSCCTTCCHHH
T ss_pred             CchhhCCHHHHHHHHHHHHHHHhcccccCCCCEE-EEec-C-CCccHHHHHHHHHHHhCCeEEEECCccCcccCCCcHHH
Confidence            33333433333445455556654211  122333 3443 3 3433333557889999999888853211 11 134666


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIK  166 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~  166 (299)
                      .++-|+.= .+|+|.+-.|-...+.+. +.+..    +   +-.+|.|.      .+...||-+.+ ++.+.++.| +++
T Consensus        82 Tarvls~~-~~D~iviR~~~~~~~~~~-la~~~----~---vPVINAG~------g~~~HPtQaLaDl~Ti~e~~g-~l~  145 (291)
T 3d6n_B           82 TLKTFEGL-GFDYVVFRVPFVFFPYKE-IVKSL----N---LRLVNAGD------GTHQHPSQGLIDFFTIKEHFG-EVK  145 (291)
T ss_dssp             HHHHHHHT-TCSEEEEEESSCCCSCHH-HHHTC----S---SEEEEEEE------TTTBCHHHHHHHHHHHHHHHS-CCT
T ss_pred             HHHHHHHh-cCCEEEEEcCChHHHHHH-HHHhC----C---CCEEeCcc------CCCcCcHHHHHHHHHHHHHhC-CcC
Confidence            66666542 258999998866555321 33222    1   33456431      34578998888 455555554 799


Q ss_pred             CcEEEEEcC--CccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCcEEEEecC
Q 022295          167 GKRAVVVGR--SNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREADIVIAAAG  219 (299)
Q Consensus       167 gk~vvViG~--s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~ADIVIsa~g  219 (299)
                      |.+++++|-  ++-|.+.++.+|...|++|+++.-.              +.++.+.+++||+|.+ +-
T Consensus       146 gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~  213 (291)
T 3d6n_B          146 DLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LR  213 (291)
T ss_dssp             TCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CC
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eC
Confidence            999999998  6678999999999999999999632              4567789999999998 54

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.57  E-value=0.0036  Score=52.33  Aligned_cols=55  Identities=24%  Similarity=0.323  Sum_probs=44.2

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccCCcEEEEecCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVREADIVIAAAGQA  221 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g~p  221 (299)
                      +++++|.|+++-+|+.++..|+++|++|+++.++..                     .+.+.++.+|+||.++|..
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            479999999898999999999999999998876421                     1335677789999888743

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.55  E-value=0.03  Score=51.89  Aligned_cols=208  Identities=17%  Similarity=0.152  Sum_probs=130.1

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCC----CCc-EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYG----KVP-GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---   81 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~----~~P-~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---   81 (299)
                      .+|+-..+.++=.+.|-+...++++...    .+- .++.+-.  . .|-.=--+=..++.++|-++.++.-. +.+   
T Consensus        11 hlls~~dls~~ei~~ll~~A~~lk~~~~~~~~L~gk~~~~lF~--e-~STRTR~SFe~A~~~LGg~~i~l~~~-~ss~~k   86 (301)
T 2ef0_A           11 DLLDFSGYGPKELQALLDLAEQLKRERYRGEDLKGKVLALLFE--K-PSLRTRTTLEVAMVHLGGHAVYLDQK-QVGIGE   86 (301)
T ss_dssp             CBSSSTTCCHHHHHHHHHHHHHHHHHTCCCCTTTTCEEEEEES--S-CCHHHHHHHHHHHHHTTCEEEEEEGG-GSCTTT
T ss_pred             CCcchhhCCHHHHHHHHHHHHHHHhccccCCCCCCCEEEEEec--c-CCcchHHHHHHHHHHcCCeEEEECCc-ccccCC
Confidence            3555555654444455555555654321    122 3444433  3 34333335578899999998887532 221   


Q ss_pred             HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHh
Q 022295           82 EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKR  160 (299)
Q Consensus        82 ~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~  160 (299)
                      -|-+.+.++-|+.=  +|+|.+-.|-...+  ..+.+..       .+-.+|.|       .+...||-+.+ ++.+.++
T Consensus        87 gEsl~DTarvls~~--~D~iviR~~~~~~~--~~la~~~-------~vPVINa~-------~~~~HPtQaLaDl~Ti~e~  148 (301)
T 2ef0_A           87 REPVRDVAKNLERF--VEGIAARVFRHETV--EALARHA-------KVPVVNAL-------SDRAHPLQALADLLTLKEV  148 (301)
T ss_dssp             CCCHHHHHHHHTTT--CSEEEEECSSHHHH--HHHHHHC-------SSCEEEEE-------CSSCCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHh--CCEEEEecCChHHH--HHHHHHC-------CCCEEeCC-------CCccCchHHHHHHHHHHHH
Confidence            23577788877764  68999987632111  2222221       23556743       24568998888 5555555


Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------CCChhhhccCCcEEEEec----CC
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------TTDPESIVREADIVIAAA----GQ  220 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------t~~l~~~~~~ADIVIsa~----g~  220 (299)
                      .| +++|.+++++|-++-|.+.++.+|...|++|+++.-.                +.++.+.+++||+|.+-.    |.
T Consensus       149 ~g-~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~  227 (301)
T 2ef0_A          149 FG-GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQ  227 (301)
T ss_dssp             HS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC----
T ss_pred             hC-CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCc
Confidence            54 7999999999997778999999999999999999633                346778999999999733    21


Q ss_pred             C-----------Cc-CCCCcc---CCCeEEEEeec
Q 022295          221 A-----------MM-IKGSWI---KPGAAVIDVGT  240 (299)
Q Consensus       221 p-----------~~-i~~~~v---k~gavVIDvg~  240 (299)
                      .           .+ ++.+.+   +|+++|+=.+.
T Consensus       228 ~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP  262 (301)
T 2ef0_A          228 EAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLP  262 (301)
T ss_dssp             ----CHHHHHTTTCCBCHHHHTTSCTTCEEEECSC
T ss_pred             ccchhHHHHHhhccccCHHHHHhcCCCcEEECCCC
Confidence            1           12 444443   67888877664

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.55  E-value=0.002  Score=63.03  Aligned_cols=73  Identities=23%  Similarity=0.239  Sum_probs=56.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------------CChhhhccC---CcEEEEecCCCC----
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------TDPESIVRE---ADIVIAAAGQAM----  222 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------~~l~~~~~~---ADIVIsa~g~p~----  222 (299)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.                  .++.+.++.   +|+||.+++.+.    
T Consensus         6 ~~IgvIG~G~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~   84 (474)
T 2iz1_A            6 ANFGVVGMAVM-GKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA   84 (474)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred             CcEEEEeeHHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence            57999998875 9999999999999999998641                  245566555   999999998753    


Q ss_pred             cCC--CCccCCCeEEEEeecc
Q 022295          223 MIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       223 ~i~--~~~vk~gavVIDvg~~  241 (299)
                      .+.  ...+++|.+|||++..
T Consensus        85 vl~~l~~~l~~g~iiId~s~~  105 (474)
T 2iz1_A           85 TIKSLLPLLDIGDILIDGGNT  105 (474)
T ss_dssp             HHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHhhCCCCCEEEECCCC
Confidence            121  2457889999998743

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.54  E-value=0.0031  Score=53.43  Aligned_cols=53  Identities=15%  Similarity=0.167  Sum_probs=43.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC--------------hh----hhccCCcEEEEecCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD--------------PE----SIVREADIVIAAAGQA  221 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~--------------l~----~~~~~ADIVIsa~g~p  221 (299)
                      +|+|.|+++.+|+.++..|+++|++|+++.++...              +.    +.+..+|+||.++|.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence            69999998889999999999999999999876321              11    4677899999988864

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.53  E-value=0.048  Score=51.37  Aligned_cols=207  Identities=16%  Similarity=0.202  Sum_probs=125.2

Q ss_pred             eeccHHHHHHHHHHHHHHHHHHHhcCC---CC-cEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HH
Q 022295           11 IIDGKAVAQTIRSEIAEEVRLLSEKYG---KV-PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EA   83 (299)
Q Consensus        11 il~gk~~a~~i~~~~~~~v~~l~~~~~---~~-P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~   83 (299)
                      +|+-..+.++=.+.|-+...+|++...   .+ -.++.+ + ..|+...-+ +=..++.++|.++.++.- .+.+   -|
T Consensus        38 lLsi~dls~~ei~~ll~~A~~lk~~~~~~~L~gK~la~l-F-~epSTRTR~-SFE~A~~~LGg~vi~l~~-~~ss~~kgE  113 (340)
T 4ep1_A           38 LLTLEELTQEEIISLIEFAIYLKKNKQEPLLQGKILGLI-F-DKHSTRTRV-SFEAGMVQLGGHGMFLNG-KEMQMGRGE  113 (340)
T ss_dssp             BSSGGGSCHHHHHHHHHHHHHHHHSCCCCTTTTCEEEEE-E-SSCCHHHHH-HHHHHHHHTTCEEEEEES-CC------C
T ss_pred             ccchhhCCHHHHHHHHHHHHHHHhcccccccCCceEEEE-e-cCCCccHHH-HHHHHHHHcCCeEEEcCc-ccccCCCCC
Confidence            555555555444455555556654321   11 244443 3 234444333 457889999999887652 2211   12


Q ss_pred             HHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhC
Q 022295           84 ELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSG  162 (299)
Q Consensus        84 el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~  162 (299)
                      -+.+.++-|+.-  +|+|.+-.|-...+  ..+.+..    +   +-.+|.|       .+...||=+.+ ++.+.++.|
T Consensus       114 sl~DTarvLs~y--~D~IviR~~~~~~~--~~lA~~~----~---vPVINag-------~~~~HPtQaLaDl~TI~E~~G  175 (340)
T 4ep1_A          114 TVSDTAKVLSHY--IDGIMIRTFSHADV--EELAKES----S---IPVINGL-------TDDHHPCQALADLMTIYEETN  175 (340)
T ss_dssp             CTTHHHHHHHHH--CSEEEEECSCHHHH--HHHHHHC----S---SCEEEEE-------CSSCCHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHh--CCEEEEecCChhHH--HHHHHhC----C---CCEEeCC-------CCCCCcHHHHHHHHHHHHHhC
Confidence            244444444432  68999887632111  2222222    2   3456753       23568998888 555555555


Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCcEEEEe
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~ADIVIsa  217 (299)
                       .++|++|+++|-++.|.+.++.+|...|++|+++.-.                         +.++.+.+++||+|.+-
T Consensus       176 -~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~  254 (340)
T 4ep1_A          176 -TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTD  254 (340)
T ss_dssp             -CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEEC
T ss_pred             -CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEec
Confidence             6999999999998889999999999999999998532                         23567889999999865


Q ss_pred             c----CCC----------Cc-CCCCcc---CCCeEEEEeec
Q 022295          218 A----GQA----------MM-IKGSWI---KPGAAVIDVGT  240 (299)
Q Consensus       218 ~----g~p----------~~-i~~~~v---k~gavVIDvg~  240 (299)
                      .    |.+          .+ |+.+.+   +|+++|+=.+.
T Consensus       255 ~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLP  295 (340)
T 4ep1_A          255 VWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLP  295 (340)
T ss_dssp             CC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSC
T ss_pred             CccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCC
Confidence            4    211          12 555544   57888877764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.53  E-value=0.0036  Score=58.43  Aligned_cols=95  Identities=20%  Similarity=0.197  Sum_probs=68.2

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh---------------------
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP---------------------  204 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l---------------------  204 (299)
                      .+||.....+..+++.++...|.+|+|+|+|+ ||..+++++...|++|+++.+....+                     
T Consensus       160 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~  238 (357)
T 2cf5_A          160 PLLCAGVTVYSPLSHFGLKQPGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKM  238 (357)
T ss_dssp             GGGTHHHHHHHHHHHTSTTSTTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHH
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHH
Confidence            35666666677777766655899999999765 69999999988999988776543211                     


Q ss_pred             hhhccCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295          205 ESIVREADIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       205 ~~~~~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~  241 (299)
                      .+....+|+||-++|.+..+  --+.++++..++.+|..
T Consensus       239 ~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T 2cf5_A          239 SELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVI  277 (357)
T ss_dssp             HHSTTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCC
T ss_pred             HHhcCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCC
Confidence            12223579999999976543  23567888888888864

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.53  E-value=0.061  Score=49.97  Aligned_cols=177  Identities=14%  Similarity=0.174  Sum_probs=113.5

Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHH
Q 022295           41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVL  117 (299)
Q Consensus        41 ~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~  117 (299)
                      .++.+-.  .|+-..-+ +=..++.++|.++.++.- .+.+   -|-+.+.++-|+.=  +|+|.+-.|-.      ...
T Consensus        47 ~la~lF~--e~STRTR~-SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~------~~~  114 (309)
T 4f2g_A           47 TLAMIFE--KSSTRTRL-SFEAGIFQLGGHAVFMST-RDTQLGRGEPVEDSAQVISRM--VDIIMIRTFEQ------DII  114 (309)
T ss_dssp             EEEEEES--SCCHHHHH-HHHHHHHHTTCEEEEECC-SSCEETBEECHHHHHHHHHHH--CSEEEEECSCH------HHH
T ss_pred             eEEEEec--CCChhhHh-hHHHHHHHcCCeEEEcCc-ccccCCCCCCHHHHHHHHHHh--CCEEEEecCCH------HHH
Confidence            4444443  33333333 457789999999887652 2211   13355555555543  68999987632      222


Q ss_pred             ccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEE
Q 022295          118 GEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTI  196 (299)
Q Consensus       118 ~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv  196 (299)
                      +.+...-   ++-.+|.|       .+...||=+.+ ++.+.++.| +++|++|+++|-++.|.+.++.+|...|++|++
T Consensus       115 ~~lA~~~---~vPVINag-------~~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~  183 (309)
T 4f2g_A          115 QRFAENS---RVPVINGL-------TNEYHPCQVLADIFTYYEHRG-PIRGKTVAWVGDANNMLYTWIQAARILDFKLQL  183 (309)
T ss_dssp             HHHHHTC---SSCEEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHhC---CCCEEECC-------CCccCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEE
Confidence            2221111   23466754       23568998888 555555555 799999999999888999999999999999999


Q ss_pred             EcCC-------------------CCChhhhccCCcEEEEec----CCC-----------Cc-CCCCcc---CCCeEEEEe
Q 022295          197 VHSH-------------------TTDPESIVREADIVIAAA----GQA-----------MM-IKGSWI---KPGAAVIDV  238 (299)
Q Consensus       197 ~~~~-------------------t~~l~~~~~~ADIVIsa~----g~p-----------~~-i~~~~v---k~gavVIDv  238 (299)
                      +.-.                   +.++.+.+++||+|.+-+    |..           .+ |+.+.+   +|++++.=.
T Consensus       184 ~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~  263 (309)
T 4f2g_A          184 STPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHC  263 (309)
T ss_dssp             ECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTTSCTTCEEEEC
T ss_pred             ECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECC
Confidence            8521                   346778999999999754    321           12 455443   577888776


Q ss_pred             ec
Q 022295          239 GT  240 (299)
Q Consensus       239 g~  240 (299)
                      +.
T Consensus       264 lP  265 (309)
T 4f2g_A          264 LP  265 (309)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.52  E-value=0.0035  Score=56.77  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=54.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------------------------------CChhhhc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------------------------------TDPESIV  208 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------------------------------~~l~~~~  208 (299)
                      ++|.|||.|.+ |.++|..|++.|.+|++++++.                                       .++.+.+
T Consensus         5 ~kV~VIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~   83 (283)
T 4e12_A            5 TNVTVLGTGVL-GSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV   83 (283)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence            68999998775 9999999999999999997542                                       2344668


Q ss_pred             cCCcEEEEecCCC-C----cCC--CCccCCCeEEEEeec
Q 022295          209 READIVIAAAGQA-M----MIK--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       209 ~~ADIVIsa~g~p-~----~i~--~~~vk~gavVIDvg~  240 (299)
                      ++||+||.+++.. .    ++.  ...+++++++++...
T Consensus        84 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS  122 (283)
T 4e12_A           84 KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSS  122 (283)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence            8999999999743 1    111  134678899887653

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=96.52  E-value=0.16  Score=47.17  Aligned_cols=179  Identities=14%  Similarity=0.107  Sum_probs=111.9

Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHH
Q 022295           41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVL  117 (299)
Q Consensus        41 ~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~  117 (299)
                      .++.+-.  .| |-.=--+=..++.++|.++.++.-+.+.+   -|-+.+.++-|+.-  +|+|.+-.|-...+  ..+.
T Consensus        42 ~la~lF~--e~-STRTR~SFe~A~~~LGg~~i~l~~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~~~~--~~lA  114 (306)
T 4ekn_B           42 ILATVFY--EP-STRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGY--ADIIVLRHPSEGAA--RLAS  114 (306)
T ss_dssp             EEEEEES--SC-CHHHHHHHHHHHHHTTCEEEEECCCTTTTSSSSCCHHHHHHHHHHH--CSEEEEECSSTTHH--HHHH
T ss_pred             eEEEEEc--CC-ChhHHhhHHHHHHHcCCEEEEcCCcccccCCCCCCHHHHHHHHHHh--CcEEEEEcCChHHH--HHHH
Confidence            4444433  33 43333355788999999988774312221   12344444444432  57999987744322  3332


Q ss_pred             ccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC--ccchHHHHHHHhhC-CCe
Q 022295          118 GEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS--NIVGLPVSLLLLKA-DAT  193 (299)
Q Consensus       118 ~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s--~~vG~pla~lL~~~-gat  193 (299)
                      +..       .+-.+|.|      ..+.+.||-+.+ ++.+.++.| +++|.+|++||-+  +-|.+.++.++... |++
T Consensus       115 ~~~-------~vPVINag------~g~~~HPtQ~LaDl~Ti~e~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~  180 (306)
T 4ekn_B          115 EYS-------QVPIINAG------DGSNQHPTQTLLDLYTIMREIG-RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVE  180 (306)
T ss_dssp             HHC-------SSCEEESC------SSSSCCHHHHHHHHHHHHHHHS-CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCE
T ss_pred             HhC-------CCCEEeCC------CCCCcCcHHHHHHHHHHHHHhC-CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCE
Confidence            222       13445642      124578998888 555555555 7999999999975  34799999999998 999


Q ss_pred             EEEEcCC---------------------CCChhhhccCCcEEEEecCC----C----------Cc-CCCCccC-CCeEEE
Q 022295          194 VTIVHSH---------------------TTDPESIVREADIVIAAAGQ----A----------MM-IKGSWIK-PGAAVI  236 (299)
Q Consensus       194 Vtv~~~~---------------------t~~l~~~~~~ADIVIsa~g~----p----------~~-i~~~~vk-~gavVI  236 (299)
                      |+++.-.                     +.++.+.+++||+|.+....    +          .+ |+.+.++ |+++++
T Consensus       181 v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~q~er~~~~~e~~~~~~~y~v~~~~l~~~~ai~m  260 (306)
T 4ekn_B          181 MYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIM  260 (306)
T ss_dssp             EEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCCCGGGCCSHHHHHHHHHHHCBCHHHHTTCCCEEE
T ss_pred             EEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCcccccCCCHHHHHHhccCcEECHHHHcCCCCEEE
Confidence            9998522                     34777889999999976432    1          12 5555554 677777


Q ss_pred             Eeec
Q 022295          237 DVGT  240 (299)
Q Consensus       237 Dvg~  240 (299)
                      =.+.
T Consensus       261 H~lP  264 (306)
T 4ekn_B          261 HPLP  264 (306)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            6664

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.52  E-value=0.0033  Score=57.41  Aligned_cols=59  Identities=17%  Similarity=0.115  Sum_probs=44.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------ChhhhccCCcEEEEecCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------DPESIVREADIVIAAAGQA  221 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~l~~~~~~ADIVIsa~g~p  221 (299)
                      -++++|+|+|.|+++.+|+.++..|+++|++|+++.+...               .+.+.+...|+||..++..
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~   88 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM   88 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence            3568899999999999999999999999999999876532               1446778999999877743

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.51  E-value=0.0036  Score=51.25  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=43.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC----------------------hhhh-ccCCcEEEEecC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD----------------------PESI-VREADIVIAAAG  219 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~----------------------l~~~-~~~ADIVIsa~g  219 (299)
                      ....+++|+|+|.|. +|..++..|...|+.|+++.++...                      +.+. +..+|+||.+++
T Consensus        15 ~~~~~~~v~IiG~G~-iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGR-LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN   93 (155)
T ss_dssp             --CCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred             cccCCCcEEEECCCH-HHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence            457789999999866 5999999999999999999754211                      1122 566788888887


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      .+.
T Consensus        94 ~~~   96 (155)
T 2g1u_A           94 DDS   96 (155)
T ss_dssp             CHH
T ss_pred             CcH
Confidence            654

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.50  E-value=0.0061  Score=55.02  Aligned_cols=40  Identities=20%  Similarity=0.349  Sum_probs=36.4

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +.+|+||.++|-|+|.-+|+.+|..|+++||.|.++.++.
T Consensus         2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~   41 (258)
T 4gkb_A            2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHA   41 (258)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCc
Confidence            4679999999999988889999999999999999998764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.49  E-value=0.0022  Score=58.33  Aligned_cols=70  Identities=17%  Similarity=0.213  Sum_probs=52.8

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCCC---------------CChhhhccCCcEEEEecCCCCcCC---
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSHT---------------TDPESIVREADIVIAAAGQAMMIK---  225 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~~i~---  225 (299)
                      .+++.|||.|.+ |..++..|.+.|.   .|++++++.               .+..+.+++||+||.++. |..+.   
T Consensus         3 ~~~I~iIG~G~m-G~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~-p~~~~~vl   80 (280)
T 3tri_A            3 TSNITFIGGGNM-ARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK-PHQIKMVC   80 (280)
T ss_dssp             CSCEEEESCSHH-HHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC-GGGHHHHH
T ss_pred             CCEEEEEcccHH-HHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC-HHHHHHHH
Confidence            468999999886 9999999999987   899998652               355677899999999994 43221   


Q ss_pred             ---CCc-cCCCeEEEEe
Q 022295          226 ---GSW-IKPGAAVIDV  238 (299)
Q Consensus       226 ---~~~-vk~gavVIDv  238 (299)
                         ... +++++++|.+
T Consensus        81 ~~l~~~~l~~~~iiiS~   97 (280)
T 3tri_A           81 EELKDILSETKILVISL   97 (280)
T ss_dssp             HHHHHHHHTTTCEEEEC
T ss_pred             HHHHhhccCCCeEEEEe
Confidence               123 5677677754

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.49  E-value=0.0051  Score=55.25  Aligned_cols=56  Identities=18%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh------------------------hhhccCCcEEEEecCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP------------------------ESIVREADIVIAAAGQ  220 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l------------------------~~~~~~ADIVIsa~g~  220 (299)
                      ++||.++|-|+|.-+|+.+|..|+++||+|.++.++...+                        -+...+-|++|+.+|.
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            5899999999998899999999999999999998763221                        1345567888877774

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.48  E-value=0.0046  Score=55.83  Aligned_cols=58  Identities=19%  Similarity=0.344  Sum_probs=46.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC------------------------hhhhccCCcEEEEec
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD------------------------PESIVREADIVIAAA  218 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~------------------------l~~~~~~ADIVIsa~  218 (299)
                      .+|+||.++|-|+|.-+|+.+|..|+++||+|.++.+...+                        ..+..-.-|++|+.+
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA   86 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVHML   86 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEECC
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            47899999999999888999999999999999999875211                        113344679999877


Q ss_pred             CC
Q 022295          219 GQ  220 (299)
Q Consensus       219 g~  220 (299)
                      |.
T Consensus        87 G~   88 (261)
T 4h15_A           87 GG   88 (261)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.47  E-value=0.0032  Score=60.75  Aligned_cols=73  Identities=23%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------------CChhhhccCCcEE
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------------TDPESIVREADIV  214 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------------~~l~~~~~~ADIV  214 (299)
                      +|.|||.|. +|.++|..|++.|.+|++++++.                                  .++.+.+++||+|
T Consensus         2 kI~VIG~G~-vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            2 RISIFGLGY-VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             EEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            689999877 59999999999999999997531                                  1333567889999


Q ss_pred             EEecCCCCc---------CC------CCccCC---CeEEEEeeccC
Q 022295          215 IAAAGQAMM---------IK------GSWIKP---GAAVIDVGTNA  242 (299)
Q Consensus       215 Isa~g~p~~---------i~------~~~vk~---gavVIDvg~~~  242 (299)
                      |.+++.|.-         +.      ...+++   +++||+.+..+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~  126 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVL  126 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcC
Confidence            999987752         11      123577   89999875443

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.47  E-value=0.017  Score=53.97  Aligned_cols=176  Identities=20%  Similarity=0.295  Sum_probs=115.9

Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHc
Q 022295           42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLG  118 (299)
Q Consensus        42 Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~  118 (299)
                      ++.+-.  .|+...-+ +=..++.++|-++.++.- .+.+   -|-+.+.++-|+.=  +|+|.+-.|-.  -....+.+
T Consensus        49 la~lF~--e~STRTR~-SFe~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~--~~~~~lA~  120 (315)
T 1pvv_A           49 LAMIFQ--KPSTRTRV-SFEVAMAHLGGHALYLNA-QDLQLRRGETIADTARVLSRY--VDAIMARVYDH--KDVEDLAK  120 (315)
T ss_dssp             EEEEES--SCCSHHHH-HHHHHHHHTTSEEEEEEG-GGSTTTTTCCHHHHHHHHTTT--CSEEEEECSSH--HHHHHHHH
T ss_pred             EEEEec--CCCcchHH-HHHHHHHHcCCeEEEECC-ccccCCCCcCHHHHHHHHHHh--CcEEEEecCch--HHHHHHHH
Confidence            444443  34444333 457889999999888762 2221   24577777777764  78999987632  11122222


Q ss_pred             cCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE
Q 022295          119 EISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       119 ~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~  197 (299)
                      ..    +   +-.+|.|       .+...||-+.+ ++.+.++.| +++|.+|+++|-++-|.+.++.+|...|++|+++
T Consensus       121 ~~----~---vPVINa~-------~~~~HPtQaLaDl~Ti~e~~g-~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~  185 (315)
T 1pvv_A          121 YA----T---VPVINGL-------SDFSHPCQALADYMTIWEKKG-TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVA  185 (315)
T ss_dssp             HC----S---SCEEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred             hC----C---CCEEcCC-------CCCCCcHHHHHHHHHHHHHhC-CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEE
Confidence            21    2   3456732       23568998888 555555554 7999999999997778999999999999999999


Q ss_pred             cCC-------------------------CCChhhhccCCcEEEEec----CC----C-------Cc-CCCCcc---CCCe
Q 022295          198 HSH-------------------------TTDPESIVREADIVIAAA----GQ----A-------MM-IKGSWI---KPGA  233 (299)
Q Consensus       198 ~~~-------------------------t~~l~~~~~~ADIVIsa~----g~----p-------~~-i~~~~v---k~ga  233 (299)
                      .-.                         +.++.+.+++||+|.+-.    |.    +       .+ ++.+.+   +|++
T Consensus       186 ~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~a  265 (315)
T 1pvv_A          186 TPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDY  265 (315)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTC
T ss_pred             CCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCc
Confidence            632                         345668899999999733    21    1       12 455443   6788


Q ss_pred             EEEEeec
Q 022295          234 AVIDVGT  240 (299)
Q Consensus       234 vVIDvg~  240 (299)
                      +++=.+.
T Consensus       266 i~mH~lP  272 (315)
T 1pvv_A          266 MFMHCLP  272 (315)
T ss_dssp             EEEECSC
T ss_pred             EEECCCC
Confidence            8887664

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.47  E-value=0.0069  Score=56.77  Aligned_cols=95  Identities=23%  Similarity=0.242  Sum_probs=63.2

Q ss_pred             cccCCHHHHHHHHHhhCC----CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC------------------CCC
Q 022295          146 FLPCTPKGCLELLKRSGV----TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH------------------TTD  203 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~----~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~------------------t~~  203 (299)
                      .+||....++..|.+..-    .-.|++|+|.|+++.+|..+++++...|++|+.+.+.                  ..+
T Consensus       159 ~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~  238 (375)
T 2vn8_A          159 SLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGS  238 (375)
T ss_dssp             TSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSC
T ss_pred             hhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchH
Confidence            345545555666643332    3479999999976778999999999999988766432                  112


Q ss_pred             hhhhc---cCCcEEEEecCCC-CcC--CCCccCCCeEEEEeec
Q 022295          204 PESIV---READIVIAAAGQA-MMI--KGSWIKPGAAVIDVGT  240 (299)
Q Consensus       204 l~~~~---~~ADIVIsa~g~p-~~i--~~~~vk~gavVIDvg~  240 (299)
                      +.+.+   ..+|+||.++|.+ ..+  .-+.++++..++.+|.
T Consensus       239 ~~~~~~~~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~  281 (375)
T 2vn8_A          239 VEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVT  281 (375)
T ss_dssp             HHHHHHTSCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCC
T ss_pred             HHHHHhhcCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCC
Confidence            22222   3579999988877 322  2345788878888875

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=96.47  E-value=0.0019  Score=64.31  Aligned_cols=99  Identities=14%  Similarity=0.210  Sum_probs=79.7

Q ss_pred             CCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhh----CCC-------eEEEEcCC-----------
Q 022295          143 DPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK----ADA-------TVTIVHSH-----------  200 (299)
Q Consensus       143 ~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~----~ga-------tVtv~~~~-----------  200 (299)
                      ..+---+|..|++..|+-.+.+++..++++.|+|.+ |-.+|.+|..    +|.       .+++|+++           
T Consensus       258 iqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaA-g~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l~  336 (555)
T 1gq2_A          258 IQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEA-ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLT  336 (555)
T ss_dssp             THHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHH-HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCC
T ss_pred             cchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCch
Confidence            344445567889999999999999999999999998 9999999887    673       59999754           


Q ss_pred             ------------CCChhhhccC--CcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295          201 ------------TTDPESIVRE--ADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV  243 (299)
Q Consensus       201 ------------t~~l~~~~~~--ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~  243 (299)
                                  ..+|.+.++.  +|++|...+.|+.+++|||+      +.-+|+=++ ||.
T Consensus       337 ~~k~~~A~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  398 (555)
T 1gq2_A          337 PEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALS-NPT  398 (555)
T ss_dssp             TTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                        1257788884  99999999899999999985      567777666 443

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.46  E-value=0.0016  Score=59.94  Aligned_cols=95  Identities=15%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             cCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhhh-
Q 022295          148 PCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPESI-  207 (299)
Q Consensus       148 PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~~-  207 (299)
                      ||.+..+...+.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++                   ..++.+. 
T Consensus       122 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~  201 (325)
T 3jyn_A          122 MLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRV  201 (325)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             hhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHH
Confidence            55666666667655444579999999976678999999999999998877643                   1222222 


Q ss_pred             ---c--cCCcEEEEecCCCCcC-CCCccCCCeEEEEeeccC
Q 022295          208 ---V--READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       208 ---~--~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~~  242 (299)
                         +  +..|+||.++|.+.+- --++++++..++.+|...
T Consensus       202 ~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~  242 (325)
T 3jyn_A          202 LELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNAS  242 (325)
T ss_dssp             HHHTTTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTT
T ss_pred             HHHhCCCCceEEEECCChHHHHHHHHHhcCCCEEEEEecCC
Confidence               2  2589999999974331 236788888999998653

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.45  E-value=0.019  Score=54.00  Aligned_cols=170  Identities=18%  Similarity=0.144  Sum_probs=110.6

Q ss_pred             ccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCC
Q 022295           52 DSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG  128 (299)
Q Consensus        52 ~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg  128 (299)
                      .|-.=--+=..++.++|.++.++.- .+.+   -|-+.+.++-|+.-  +|+|.+-.|-.  -....+.+..       +
T Consensus        55 ~STRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~--~~~~~lA~~s-------~  122 (335)
T 1dxh_A           55 TSTRTRCAFEVAAYDQGANVTYIDP-NSSQIGHKESMKDTARVLGRM--YDAIEYRGFKQ--EIVEELAKFA-------G  122 (335)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECT-TTCCBTTTBCHHHHHHHHHHH--CSEEEEECSCH--HHHHHHHHHS-------S
T ss_pred             CCcchHHHHHHHHHHcCCeEEEECC-ccccCcCCCcHHHHHHHHHhh--CCEEEEecCCh--hHHHHHHHhC-------C
Confidence            3433333557889999999988863 2221   13355555555543  57999887632  1112222221       2


Q ss_pred             CCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC------
Q 022295          129 FHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH------  200 (299)
Q Consensus       129 ~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~------  200 (299)
                      +-.+|.|       .+.+.||=+.+ ++.+.++.|.+++|.+++++|-+ +-|.+.++..|...|++|++|.-.      
T Consensus       123 vPVINa~-------~~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~  195 (335)
T 1dxh_A          123 VPVFNGL-------TDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHD  195 (335)
T ss_dssp             SCEEEEE-------CSSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCH
T ss_pred             CCEEcCC-------CCCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCH
Confidence            4556732       24568998888 55555555448999999999986 567999999999999999999622      


Q ss_pred             -------------------CCChhhhccCCcEEEEec----CC-------------CCcCCCCcc----CCCeEEEEeec
Q 022295          201 -------------------TTDPESIVREADIVIAAA----GQ-------------AMMIKGSWI----KPGAAVIDVGT  240 (299)
Q Consensus       201 -------------------t~~l~~~~~~ADIVIsa~----g~-------------p~~i~~~~v----k~gavVIDvg~  240 (299)
                                         +.++.+.+++||+|.+-+    |.             |--|+.+.+    +|+++++=.+.
T Consensus       196 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (335)
T 1dxh_A          196 EFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  275 (335)
T ss_dssp             HHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence                               346778899999999733    21             112555554    67788877764

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.45  E-value=0.0029  Score=61.29  Aligned_cols=123  Identities=16%  Similarity=0.239  Sum_probs=70.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---ChhhhccCCcEEEEecC-CCCcCCCCccC--CCeEEEE
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---DPESIVREADIVIAAAG-QAMMIKGSWIK--PGAAVID  237 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---~l~~~~~~ADIVIsa~g-~p~~i~~~~vk--~gavVID  237 (299)
                      +++||+|.|||.|+. |+++|.+|.++|+.|++++.+..   ...+.+++..+-+. .| .|.    +.+.  ...+|+-
T Consensus         6 ~~~~k~v~viG~G~s-G~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~-~g~~~~----~~~~~~~d~vv~s   79 (451)
T 3lk7_A            6 TFENKKVLVLGLARS-GEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVV-CGSHPL----ELLDEDFCYMIKN   79 (451)
T ss_dssp             TTTTCEEEEECCTTT-HHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEE-ESCCCG----GGGGSCEEEEEEC
T ss_pred             hcCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEE-ECCChH----HhhcCCCCEEEEC
Confidence            478999999999987 99999999999999999987532   12223333233222 12 111    1111  1234444


Q ss_pred             eeccCCCCC---ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          238 VGTNAVDDS---TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       238 vg~~~~~~~---~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      -|+++....   -...|-.+.++.++-...... .+--|-|--|.-|+..|+.++++..
T Consensus        80 pgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~-~~IaVTGTnGKTTTt~ml~~iL~~~  137 (451)
T 3lk7_A           80 PGIPYNNPMVKKALEKQIPVLTEVELAYLVSES-QLIGITGSNGKTTTTTMIAEVLNAG  137 (451)
T ss_dssp             TTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCS-EEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             CcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCC-CEEEEECCCCHHHHHHHHHHHHHhc
Confidence            444332100   000122467776653211111 2233668889999999999988754

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=96.45  E-value=0.024  Score=53.66  Aligned_cols=164  Identities=17%  Similarity=0.219  Sum_probs=108.4

Q ss_pred             HHHHHHHHcCCceeeecCCCC-CC-HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccc
Q 022295           59 MKRKACAEVGIKSFDIDLPEQ-VS-EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGK  136 (299)
Q Consensus        59 ~k~k~~~~~Gi~~~~~~l~~~-~~-~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~  136 (299)
                      +=..++.++|.++.++..... .. -|-+.+.++-|..-  +|+|.+-.|-  |-....+.+..       ++-.+|.| 
T Consensus        83 SFE~A~~~LGg~~i~l~~~~s~l~kgEsl~DTarvLs~~--~D~IviR~~~--~~~~~~lA~~s-------~vPVINag-  150 (353)
T 3sds_A           83 STEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSM--VSCIVARVGP--HSDIANLAKHS-------SVPVINAL-  150 (353)
T ss_dssp             HHHHHHHHTTCEEEEECTTTC--CCSSCHHHHHHHHHTS--CSEEEEECSS--HHHHHHHHHHC-------SSCEEEEE-
T ss_pred             HHHHHHHHcCCeEEecCCccccccCCccHHHHHHHHHHh--cCEEEEEeCC--hHHHHHHHhhC-------CCCEEECC-
Confidence            557889999999877643211 11 14566777777764  7899987652  22112222221       23456754 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHhhCCC------------cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---
Q 022295          137 LAMKGRDPLFLPCTPKG-CLELLKRSGVT------------IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---  200 (299)
Q Consensus       137 l~~g~~~~~~~PcT~~a-v~~ll~~~~~~------------l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---  200 (299)
                            .+.+.||=+.+ ++.+.++.|--            ++|++|++||-+..|.+.++.+|...|++|++|.-.   
T Consensus       151 ------~d~~HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~  224 (353)
T 3sds_A          151 ------CDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYE  224 (353)
T ss_dssp             ------CSSCCHHHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             ------CCCCCcHHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccC
Confidence                  13468998888 56666666632            599999999999999999999999999999998522   


Q ss_pred             ------------------------CCChhhhccCCcEEEEec----CCC-----------Cc-CCCCcc-----CCCeEE
Q 022295          201 ------------------------TTDPESIVREADIVIAAA----GQA-----------MM-IKGSWI-----KPGAAV  235 (299)
Q Consensus       201 ------------------------t~~l~~~~~~ADIVIsa~----g~p-----------~~-i~~~~v-----k~gavV  235 (299)
                                              +.++.+.+++||+|++-+    |..           .+ |+.+.+     +++++|
T Consensus       225 ~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~  304 (353)
T 3sds_A          225 IPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKF  304 (353)
T ss_dssp             CCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEE
T ss_pred             CCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEE
Confidence                                    136678899999999754    321           12 565553     577888


Q ss_pred             EEeec
Q 022295          236 IDVGT  240 (299)
Q Consensus       236 IDvg~  240 (299)
                      +=.+.
T Consensus       305 MHcLP  309 (353)
T 3sds_A          305 MHCLP  309 (353)
T ss_dssp             EECSC
T ss_pred             ECCCC
Confidence            77763

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.44  E-value=0.0027  Score=58.18  Aligned_cols=36  Identities=28%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ++++||+|+|||.|. ||...+..|+..||.|+++..
T Consensus         9 ~~l~~k~VLVVGgG~-va~rka~~Ll~~Ga~VtViap   44 (274)
T 1kyq_A            9 HQLKDKRILLIGGGE-VGLTRLYKLMPTGCKLTLVSP   44 (274)
T ss_dssp             ECCTTCEEEEEEESH-HHHHHHHHHGGGTCEEEEEEE
T ss_pred             EEcCCCEEEEECCcH-HHHHHHHHHHhCCCEEEEEcC
Confidence            478999999999877 599999999999999999853

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=96.44  E-value=0.0021  Score=64.53  Aligned_cols=95  Identities=11%  Similarity=0.174  Sum_probs=77.9

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhh----CCC-------eEEEEcCC---------------
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK----ADA-------TVTIVHSH---------------  200 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~----~ga-------tVtv~~~~---------------  200 (299)
                      --+|..|++..|+-.+.+|+..++++.|+|.+ |-.+|.+|..    +|.       .+++|+++               
T Consensus       300 A~V~lAgllnAlki~gk~l~d~riv~~GAGaA-gigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~  378 (605)
T 1o0s_A          300 ASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAA-STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHV  378 (605)
T ss_dssp             HHHHHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGT
T ss_pred             HHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHH
Confidence            34567889999999999999999999999998 9999999887    784       58999754               


Q ss_pred             --------CCChhhhccC--CcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295          201 --------TTDPESIVRE--ADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV  243 (299)
Q Consensus       201 --------t~~l~~~~~~--ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~  243 (299)
                              ..+|.+.++.  +|++|...+.|+.++++||+      +.-+|+=++ ||.
T Consensus       379 ~~A~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  436 (605)
T 1o0s_A          379 QFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS-NPT  436 (605)
T ss_dssp             TTCBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                    1257788884  99999999999999999985      566777666 443

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.44  E-value=0.0054  Score=54.14  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=34.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   41 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKP   41 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999999998899999999999999999997653

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.43  E-value=0.0059  Score=53.58  Aligned_cols=38  Identities=24%  Similarity=0.370  Sum_probs=34.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   46 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN   46 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence            57899999999999999999999999999999987764

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.43  E-value=0.011  Score=55.72  Aligned_cols=171  Identities=14%  Similarity=0.131  Sum_probs=114.0

Q ss_pred             CcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccC
Q 022295           50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDV  126 (299)
Q Consensus        50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDV  126 (299)
                      .|+...-. +=..++.++|.++.++.- .+.+   -|-+.+.++-|+.-  +|+|.+-.|-...+  ..+.+..      
T Consensus        53 e~STRTR~-SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~~~~--~~lA~~~------  120 (333)
T 1duv_G           53 KDSTRTRC-SFEVAAYDQGARVTYLGP-SGSQIGHKESIKDTARVLGRM--YDGIQYRGYGQEIV--ETLAEYA------  120 (333)
T ss_dssp             SCCSHHHH-HHHHHHHHTTCEEEEECS-SSSCBTTTBCHHHHHHHHTTT--CSEEEEECSCHHHH--HHHHHHH------
T ss_pred             CCCccHHH-HHHHHHHHcCCeEEEECC-ccccCcCCCcHHHHHHHHHHh--CCEEEEEcCCchHH--HHHHHhC------
Confidence            34444333 457889999999988853 2221   24577788878764  78999987632111  2222211      


Q ss_pred             CCCCcccccccccCCCCCccccCCHHH-HHHHHHh-hCCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC---
Q 022295          127 DGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKR-SGVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH---  200 (299)
Q Consensus       127 Dg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~-~~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~---  200 (299)
                       ++-.+|.|       .+...||=+.+ ++.+.++ .|.+++|.+++++|-+ +-|.+.++..|...|++|++|.-.   
T Consensus       121 -~vPVINa~-------~~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~  192 (333)
T 1duv_G          121 -SVPVWNGL-------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACW  192 (333)
T ss_dssp             -SSCEEESC-------CSSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGC
T ss_pred             -CCCeEcCC-------CCCCCchHHHHHHHHHHHHhcCCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccC
Confidence             23456632       24578998888 5555555 4548999999999986 567999999999999999999522   


Q ss_pred             ----------------------CCChhhhccCCcEEEEec----CC-------------CCcCCCCcc----CCCeEEEE
Q 022295          201 ----------------------TTDPESIVREADIVIAAA----GQ-------------AMMIKGSWI----KPGAAVID  237 (299)
Q Consensus       201 ----------------------t~~l~~~~~~ADIVIsa~----g~-------------p~~i~~~~v----k~gavVID  237 (299)
                                            +.++.+.+++||+|.+-+    |.             |--|+.+.+    +|+++++=
T Consensus       193 p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mH  272 (333)
T 1duv_G          193 PEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLH  272 (333)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEEC
Confidence                                  346778899999999733    21             112565554    67888887


Q ss_pred             eec
Q 022295          238 VGT  240 (299)
Q Consensus       238 vg~  240 (299)
                      .+.
T Consensus       273 cLP  275 (333)
T 1duv_G          273 CLP  275 (333)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.42  E-value=0.0016  Score=60.12  Aligned_cols=94  Identities=18%  Similarity=0.169  Sum_probs=65.8

Q ss_pred             cCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhhh-
Q 022295          148 PCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPESI-  207 (299)
Q Consensus       148 PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~~-  207 (299)
                      ||++...+..+.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++.                   .++.+. 
T Consensus       130 ~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~  209 (334)
T 3qwb_A          130 LLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQV  209 (334)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHH
T ss_pred             hhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHH
Confidence            444555556665554445799999999766689999999999999988876531                   222222 


Q ss_pred             ---c--cCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          208 ---V--READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       208 ---~--~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                         +  +..|+||.++|.+.+ ---++++++..++.+|..
T Consensus       210 ~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  249 (334)
T 3qwb_A          210 LKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNA  249 (334)
T ss_dssp             HHHTTTSCEEEEEECCGGGGHHHHHHHEEEEEEEEECCCT
T ss_pred             HHHhCCCCceEEEECCChHHHHHHHHHhccCCEEEEEcCC
Confidence               1  248999999997433 123567888889999864

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.42  E-value=0.0064  Score=53.65  Aligned_cols=59  Identities=31%  Similarity=0.428  Sum_probs=45.1

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------CChhhh---ccCCcEEEEecCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------TDPESI---VREADIVIAAAGQ  220 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------~~l~~~---~~~ADIVIsa~g~  220 (299)
                      -.+++||+++|.|+++-+|+.++..|+++|++|.++.++.                .++.+.   +...|+||..+|.
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag~   91 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG   91 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCeEEEeeHHHHHHHHHHHhcCCCEEEECCCC
Confidence            4568999999999999999999999999999999987652                122222   2367888887774

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.41  E-value=0.012  Score=57.01  Aligned_cols=54  Identities=24%  Similarity=0.199  Sum_probs=44.7

Q ss_pred             ccccCCHHHHHHHH----HhhCCCcCCcEEEEEcCCccchHHHHHHHhh-CCCeEE-EEcC
Q 022295          145 LFLPCTPKGCLELL----KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK-ADATVT-IVHS  199 (299)
Q Consensus       145 ~~~PcT~~av~~ll----~~~~~~l~gk~vvViG~s~~vG~pla~lL~~-~gatVt-v~~~  199 (299)
                      +..+.|++|++..+    ++.|.+++|++|+|.|.|+ ||..++.+|.+ .|++|. ++++
T Consensus       183 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~Gn-VG~~~a~~L~e~~GakvVavsD~  242 (415)
T 2tmg_A          183 GREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGN-VGQFAALLISQELGSKVVAVSDS  242 (415)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSH-HHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CcCcchHHHHHHHHHHHHHHcCCCcCCCEEEEECCcH-HHHHHHHHHHHhcCCEEEEEEeC
Confidence            34578999987664    5579999999999999877 69999999998 999866 7765

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.0049  Score=57.12  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------CChh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------TDPE  205 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------~~l~  205 (299)
                      .+||.....+..|++.++ -.|++|+|+|+++.+|..+++++...|++|+++.++.                    .++.
T Consensus       150 ~l~~~~~ta~~~l~~~~~-~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~  228 (347)
T 2hcy_A          150 PILCAGITVYKALKSANL-MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIV  228 (347)
T ss_dssp             GGGTHHHHHHHHHHTTTC-CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHH
T ss_pred             HHhhhHHHHHHHHHhcCC-CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHH
Confidence            356655556677766543 3689999999977779999999999999988876432                    1222


Q ss_pred             hhcc-----CCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295          206 SIVR-----EADIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 ~~~~-----~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~  241 (299)
                      +.++     ..|+||.++|.+..+  --+.++++..++.+|..
T Consensus       229 ~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          229 GAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCC
T ss_pred             HHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence            2222     479999999875433  23567888888888864

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.41  E-value=0.0016  Score=58.80  Aligned_cols=72  Identities=21%  Similarity=0.280  Sum_probs=54.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhC--CCeEEEEcCCC----------------CChhhhccCCcEEEEecCCCC---cCC-
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA--DATVTIVHSHT----------------TDPESIVREADIVIAAAGQAM---MIK-  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~--gatVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~---~i~-  225 (299)
                      ++|.|||.|.+ |.+++..|.+.  +.+|++++++.                .++.+.++++|+||.+++...   ++. 
T Consensus         7 ~~I~iIG~G~m-G~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~   85 (290)
T 3b1f_A            7 KTIYIAGLGLI-GASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDFIKI   85 (290)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHHHHHHHH
T ss_pred             ceEEEEeeCHH-HHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHHHHHHHH
Confidence            68999998775 99999999877  57899887541                245567889999999997533   221 


Q ss_pred             -CCc-cCCCeEEEEeec
Q 022295          226 -GSW-IKPGAAVIDVGT  240 (299)
Q Consensus       226 -~~~-vk~gavVIDvg~  240 (299)
                       ..+ ++++.+|+|++.
T Consensus        86 l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           86 LADLDLKEDVIITDAGS  102 (290)
T ss_dssp             HHTSCCCTTCEEECCCS
T ss_pred             HHhcCCCCCCEEEECCC
Confidence             235 788999999764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.41  E-value=0.0023  Score=60.45  Aligned_cols=72  Identities=11%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------CCChhhhccCCcEEEEec
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      -.+|.|||.|.+ |.++|..|++.|.+|+++.++                            +.++.+.+++||+||.++
T Consensus        29 ~mkI~VIGaG~m-G~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           29 KHPIAILGAGSW-GTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CSCEEEECCSHH-HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             CCeEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            368999998775 999999999999999999754                            135567789999999999


Q ss_pred             CCCCc---CC--CCccCCCeEEEEee
Q 022295          219 GQAMM---IK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       219 g~p~~---i~--~~~vk~gavVIDvg  239 (299)
                      +...+   +.  ..+++++++||++.
T Consensus       108 p~~~~~~vl~~i~~~l~~~~ivvs~~  133 (356)
T 3k96_A          108 PSFAFHEVITRMKPLIDAKTRIAWGT  133 (356)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            75431   11  24578899999874

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.40  E-value=0.0022  Score=58.23  Aligned_cols=93  Identities=14%  Similarity=0.168  Sum_probs=63.3

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC--------------------hhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD--------------------PES  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~--------------------l~~  206 (299)
                      +||.....+..|.+.. --.|++|+|+|+++.+|..+++++...|++|+.+.++...                    +.+
T Consensus       107 l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~  185 (302)
T 1iz0_A          107 FPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAK  185 (302)
T ss_dssp             SHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHH
T ss_pred             hhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHH
Confidence            4555555666676555 4579999999996778999999999999998888664211                    112


Q ss_pred             hccCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          207 IVREADIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       207 ~~~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                      .++.+|+||. +|.+.+- .-+.++++..++.+|..
T Consensus       186 ~~~~~d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~  220 (302)
T 1iz0_A          186 AWGGLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAA  220 (302)
T ss_dssp             HTTSEEEEEE-CSCTTHHHHHTTEEEEEEEEEC---
T ss_pred             HhcCceEEEE-CCHHHHHHHHHhhccCCEEEEEeCC
Confidence            2356899999 8874321 23567887788888864

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.40  E-value=0.0032  Score=56.12  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=32.9

Q ss_pred             CCcCCcEEEEEcCC---ccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRS---NIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s---~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+|+||.++|-|++   ++ |+.+|..|+++||+|.++.++
T Consensus         2 ~~l~gK~alVTGaa~~~GI-G~aiA~~la~~Ga~Vvi~~r~   41 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSI-AFGVAKVLDQLGAKLVFTYRK   41 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEECC
Confidence            36899999999975   55 999999999999999999765

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.40  E-value=0.0023  Score=59.42  Aligned_cols=96  Identities=18%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------------Chhhh-
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------------DPESI-  207 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------------~l~~~-  207 (299)
                      +||.....+..|.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++..                  ++.+. 
T Consensus       140 l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v  219 (342)
T 4eye_A          140 LIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAV  219 (342)
T ss_dssp             HTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHH
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHH
Confidence            45555566667754444457999999999666799999999999999888765422                  22221 


Q ss_pred             ---c--cCCcEEEEecCCCCcC-CCCccCCCeEEEEeeccC
Q 022295          208 ---V--READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       208 ---~--~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~~  242 (299)
                         +  +.+|+||.++|.+.+- --++++++..++.+|...
T Consensus       220 ~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~  260 (342)
T 4eye_A          220 REATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAA  260 (342)
T ss_dssp             HHHTTTSCEEEEEESCC--CHHHHHHTEEEEEEEEEC----
T ss_pred             HHHhCCCCceEEEECCchhHHHHHHHhhcCCCEEEEEEccC
Confidence               2  2489999999976431 235678888888888643

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.39  E-value=0.0065  Score=55.40  Aligned_cols=59  Identities=14%  Similarity=0.157  Sum_probs=47.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------C------hhhhcc--CCcEEEEe
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------D------PESIVR--EADIVIAA  217 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------~------l~~~~~--~ADIVIsa  217 (299)
                      .+++|++|+|.|+++.+|+.++..|+++|++|+++.+...                 |      +.+.++  ..|+||..
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~   95 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS   95 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence            4678999999999999999999999999999999876321                 1      234555  78999988


Q ss_pred             cCCC
Q 022295          218 AGQA  221 (299)
Q Consensus       218 ~g~p  221 (299)
                      +|..
T Consensus        96 A~~~   99 (330)
T 2pzm_A           96 AAAY   99 (330)
T ss_dssp             CCCC
T ss_pred             CccC
Confidence            7743

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.39  E-value=0.0026  Score=50.96  Aligned_cols=55  Identities=18%  Similarity=0.191  Sum_probs=41.6

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------------C---hhh-hccCCcEEEEecCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------------D---PES-IVREADIVIAAAGQA  221 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------------~---l~~-~~~~ADIVIsa~g~p  221 (299)
                      .+++++|+|.|. +|+.++..|.++|..|+++.++..                  +   +.+ .+.++|+||.++|..
T Consensus         5 ~~~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~   81 (141)
T 3llv_A            5 GRYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDD   81 (141)
T ss_dssp             -CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCH
Confidence            467899999977 599999999999999999976521                  1   111 146789999888843

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.37  E-value=0.0022  Score=59.09  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=67.2

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------CChh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------TDPE  205 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------~~l~  205 (299)
                      .+||.....+..|.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++.                    .++.
T Consensus       129 ~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  208 (336)
T 4b7c_A          129 ALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLA  208 (336)
T ss_dssp             TTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHH
T ss_pred             hcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHH
Confidence            35555566777774444445799999999966679999999999999998876432                    1222


Q ss_pred             hhc-----cCCcEEEEecCCCCc-CCCCccCCCeEEEEeeccC
Q 022295          206 SIV-----READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       206 ~~~-----~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~~  242 (299)
                      +.+     ...|+||.++|.+.+ ---+.++++..++.+|...
T Consensus       209 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          209 AGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             HHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGG
T ss_pred             HHHHHhcCCCceEEEECCCcchHHHHHHHHhhCCEEEEEeecc
Confidence            222     247899988886432 1235678888888888654

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.36  E-value=0.018  Score=54.61  Aligned_cols=177  Identities=12%  Similarity=0.154  Sum_probs=116.3

Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHH
Q 022295           41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVL  117 (299)
Q Consensus        41 ~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~  117 (299)
                      .++.+-.  .|+...-+ +=..++.++|.++.++.- .+.+   -|-+.+.++-|+.-  +|+|.+-.|-.      ...
T Consensus        43 ~la~lF~--epSTRTR~-SFE~A~~~LGg~vi~l~~-~~ssl~kgEsl~DTarvLs~y--~D~IviR~~~~------~~~  110 (355)
T 4a8p_A           43 SLGMIFQ--QSSTRTRV-SFETAMEQLGGHGEYLAP-GQIQLGGHETIEDTSRVLSRL--VDILMARVERH------HSI  110 (355)
T ss_dssp             EEEEEES--SCCSHHHH-HHHHHHHHTTCEEEEECB-TTBCBTTTBCHHHHHHHHTTT--CSEEEEECSSH------HHH
T ss_pred             EEEEEec--CCChhhHh-hHHHHHHHcCCeEEEeCc-ccccCCCCcCHHHHHHHHHHh--CCEEEEecCcH------HHH
Confidence            4444432  34444433 457889999999987642 2221   24577888888774  89999987632      222


Q ss_pred             ccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhh--CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeE
Q 022295          118 GEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRS--GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATV  194 (299)
Q Consensus       118 ~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~--~~~l~gk~vvViG~s~~vG~pla~lL~~~gatV  194 (299)
                      ..+...-   ++-.+|.|       .+...||=+.+ ++.+.++.  |.+++|.+|++||-++-|.+.++.+|...|++|
T Consensus       111 ~~lA~~~---~vPVINag-------~~~~HPtQaLaDl~TI~E~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v  180 (355)
T 4a8p_A          111 VDLANCA---TIPVINGM-------SDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNF  180 (355)
T ss_dssp             HHHHHHC---SSCEEECC-------CSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESCCCHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHhC---CCCEEeCC-------CCCCCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEE
Confidence            2221111   23456653       24568998888 55555555  447999999999998889999999999999999


Q ss_pred             EEEcCC-------------------------CCChhhhccCCcEEEEec----CC-------------CCc-CCCCcc--
Q 022295          195 TIVHSH-------------------------TTDPESIVREADIVIAAA----GQ-------------AMM-IKGSWI--  229 (299)
Q Consensus       195 tv~~~~-------------------------t~~l~~~~~~ADIVIsa~----g~-------------p~~-i~~~~v--  229 (299)
                      +++.-.                         +.++. .+++||+|.+-+    |.             |.+ |+.+.+  
T Consensus       181 ~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~  259 (355)
T 4a8p_A          181 VHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDR  259 (355)
T ss_dssp             EEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHH
T ss_pred             EEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhccccccCHHHHHh
Confidence            998632                         23555 789999999743    31             212 455444  


Q ss_pred             -CCCeEEEEeec
Q 022295          230 -KPGAAVIDVGT  240 (299)
Q Consensus       230 -k~gavVIDvg~  240 (299)
                       +++++|+=.+.
T Consensus       260 ak~dai~MHcLP  271 (355)
T 4a8p_A          260 AGANCKFMHCLP  271 (355)
T ss_dssp             HCTTCEEEECSC
T ss_pred             cCCCcEEECCCC
Confidence             67888887774

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.36  E-value=0.0068  Score=54.15  Aligned_cols=40  Identities=28%  Similarity=0.395  Sum_probs=35.8

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++..
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   46 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPET   46 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4689999999999988999999999999999999987643

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.36  E-value=0.0049  Score=56.96  Aligned_cols=69  Identities=17%  Similarity=0.260  Sum_probs=51.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------------CChhhhccCCcEEEEecCCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      -++.|||.|.+ |.+++..|++.|.+|++++++.                         .+..+ +..+|+||.++..+.
T Consensus        15 ~kI~iIG~G~m-G~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~~~   92 (335)
T 1z82_A           15 MRFFVLGAGSW-GTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPVQY   92 (335)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCGGG
T ss_pred             CcEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCHHH
Confidence            47999998885 9999999999999999997642                         12344 678999999998543


Q ss_pred             c--CCCCccC-CCeEEEEee
Q 022295          223 M--IKGSWIK-PGAAVIDVG  239 (299)
Q Consensus       223 ~--i~~~~vk-~gavVIDvg  239 (299)
                      +  +- +.++ ++.+||++.
T Consensus        93 ~~~v~-~~l~~~~~~vv~~~  111 (335)
T 1z82_A           93 IREHL-LRLPVKPSMVLNLS  111 (335)
T ss_dssp             HHHHH-TTCSSCCSEEEECC
T ss_pred             HHHHH-HHhCcCCCEEEEEe
Confidence            2  10 1122 788999986

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.36  E-value=0.0014  Score=55.66  Aligned_cols=96  Identities=15%  Similarity=0.199  Sum_probs=61.8

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChh--
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPE--  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~--  205 (299)
                      +||.....+..+.+..---.|++|+|+|+++-+|..+++++...|++|+.+.++.                   .+..  
T Consensus        19 ~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~   98 (198)
T 1pqw_A           19 FGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADE   98 (198)
T ss_dssp             HHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHH
Confidence            3443444555555443334789999999766679999999999999988876431                   1111  


Q ss_pred             --hhc--cCCcEEEEecCCCCc-CCCCccCCCeEEEEeeccC
Q 022295          206 --SIV--READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       206 --~~~--~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~~  242 (299)
                        +.+  ...|+||.++|.+.+ --.+.++++..++.+|...
T Consensus        99 ~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~  140 (198)
T 1pqw_A           99 ILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKD  140 (198)
T ss_dssp             HHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGG
T ss_pred             HHHHhCCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCC
Confidence              112  247999988874322 1124567888888888653

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.36  E-value=0.022  Score=52.88  Aligned_cols=183  Identities=17%  Similarity=0.212  Sum_probs=111.6

Q ss_pred             eccHHHHHHHHHHHHHHHHHHHhcC--C---CCc-EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---H
Q 022295           12 IDGKAVAQTIRSEIAEEVRLLSEKY--G---KVP-GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---E   82 (299)
Q Consensus        12 l~gk~~a~~i~~~~~~~v~~l~~~~--~---~~P-~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~   82 (299)
                      |+-+.+.++=.+.|-+....+++..  +   .+- .++.+-.  .|+...-. +=..++.++|.++.++.-. +.+   -
T Consensus         6 ls~~dls~~ei~~ll~~A~~lk~~~~~~~~~L~gk~l~~lF~--e~STRTR~-SFe~A~~~LGg~~i~l~~~-~ss~~kg   81 (307)
T 2i6u_A            6 LRDDDLSPAEQAEVLELAAELKKDPVSRRPLQGPRGVAVIFD--KNSTRTRF-SFELGIAQLGGHAVVVDSG-STQLGRD   81 (307)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHHHSTTSCCTTTTTCEEEEEES--SCCSHHHH-HHHHHHHHTTCEEEEEEGG-GSGGGGT
T ss_pred             CchhhCCHHHHHHHHHHHHHHHhhhhccCcccCCCEEEEEec--CCCcchHH-HHHHHHHHcCCeEEEECCc-cccCCCC
Confidence            3434444333344445555565421  1   122 3444443  34444333 4578899999998877522 211   1


Q ss_pred             HHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhh
Q 022295           83 AELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRS  161 (299)
Q Consensus        83 ~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~  161 (299)
                      |-+.+.++-|+.-  +|+|.+-.|-...  ...+.+..       ++-.+|.|       .+...||-+.+ ++.+.++.
T Consensus        82 Esl~DTarvls~~--~D~iviR~~~~~~--~~~lA~~~-------~vPVINa~-------~~~~HPtQaLaDl~Ti~e~~  143 (307)
T 2i6u_A           82 ETLQDTAKVLSRY--VDAIVWRTFGQER--LDAMASVA-------TVPVINAL-------SDEFHPCQVLADLQTIAERK  143 (307)
T ss_dssp             CCHHHHHHHHHHH--EEEEEEECSSHHH--HHHHHHHC-------SSCEEESC-------CSSCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh--CCEEEEecCChhH--HHHHHhhC-------CCCEEcCC-------CCCcCccHHHHHHHHHHHHh
Confidence            2355555555543  6899988763211  12222221       24556632       24568998888 55555555


Q ss_pred             CCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCcEEE
Q 022295          162 GVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREADIVI  215 (299)
Q Consensus       162 ~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~ADIVI  215 (299)
                       .+++|.+++++|-+ +-|.+.++.+|...|++|+++.-.                         +.++.+.+++||+|.
T Consensus       144 -g~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy  222 (307)
T 2i6u_A          144 -GALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLV  222 (307)
T ss_dssp             -SCCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEE
T ss_pred             -CCcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEE
Confidence             47999999999986 567999999999999999999632                         345668899999999


Q ss_pred             Ee
Q 022295          216 AA  217 (299)
Q Consensus       216 sa  217 (299)
                      +-
T Consensus       223 ~~  224 (307)
T 2i6u_A          223 TD  224 (307)
T ss_dssp             EC
T ss_pred             ec
Confidence            73

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.35  E-value=0.013  Score=57.11  Aligned_cols=85  Identities=24%  Similarity=0.339  Sum_probs=65.7

Q ss_pred             HHHHHHHHhhCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCC---------------CCChhhh
Q 022295          152 KGCLELLKRSGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSH---------------TTDPESI  207 (299)
Q Consensus       152 ~av~~ll~~~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~---------------t~~l~~~  207 (299)
                      .=+++.+++...+++|++|.|+|-+         +.-...++..|.++|++|.+.+-.               ..++.+.
T Consensus       318 ~~vv~~l~~~~~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a  397 (444)
T 3vtf_A          318 RYAVQLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQAL  397 (444)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHH
T ss_pred             HHHHHHHHHHccccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHH
Confidence            4456667766678999999999933         222667889999999999999743               2456788


Q ss_pred             ccCCcEEEEecCCCCcCCCCccCCCeEEEEe
Q 022295          208 VREADIVIAAAGQAMMIKGSWIKPGAAVIDV  238 (299)
Q Consensus       208 ~~~ADIVIsa~g~p~~i~~~~vk~gavVIDv  238 (299)
                      +++||.||.+|..+.|-..+|  ++.+|+|.
T Consensus       398 ~~~aDavvi~t~h~ef~~ld~--~~~vv~D~  426 (444)
T 3vtf_A          398 LDQVEGVIIATAWPQYEGLDY--RGKVVVDG  426 (444)
T ss_dssp             HHHCSEEEECSCCGGGGGSCC--TTCEEEES
T ss_pred             HhCCCEEEEccCCHHHhCCCc--CCCEEEEC
Confidence            999999999999988755555  46799993

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.35  E-value=0.005  Score=57.89  Aligned_cols=93  Identities=17%  Similarity=0.192  Sum_probs=66.1

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC--------------------hhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD--------------------PES  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~--------------------l~~  206 (299)
                      +||.....+..|++.++ -.|.+|+|+|+|+ ||..+++++...|++|+.+.+....                    +.+
T Consensus       176 l~~~~~tA~~al~~~~~-~~g~~VlV~GaG~-vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~  253 (369)
T 1uuf_A          176 LLCAGITTYSPLRHWQA-GPGKKVGVVGIGG-LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAA  253 (369)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHT
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHH
Confidence            55655556677776543 3689999999866 7999999999999998877643211                    112


Q ss_pred             hccCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          207 IVREADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       207 ~~~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                      ....+|+||.++|.+..+.  -+.++++..++.+|..
T Consensus       254 ~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          254 HLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             TTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC
T ss_pred             hhcCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccC
Confidence            2246899999999875432  3678888888888864

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.35  E-value=0.0025  Score=58.42  Aligned_cols=94  Identities=22%  Similarity=0.224  Sum_probs=66.1

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC------------------CCCC-hhhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS------------------HTTD-PESI  207 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~------------------~t~~-l~~~  207 (299)
                      +||.....+..|+..+ .-.|.+|+|+|+++.+|..+++++...|++|+.+.+                  +..+ +.+.
T Consensus       134 l~~~~~ta~~al~~~~-~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~  212 (321)
T 3tqh_A          134 LPTAGLTALQALNQAE-VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAI  212 (321)
T ss_dssp             SHHHHHHHHHHHHHTT-CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHC
T ss_pred             hhhHHHHHHHHHHhcC-CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhh
Confidence            4555445566664443 357899999986666799999999999998776532                  2334 5566


Q ss_pred             ccCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          208 VREADIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       208 ~~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                      ++.+|+||-++|.+.+ -.-+.++++..++.+|..
T Consensus       213 ~~g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  247 (321)
T 3tqh_A          213 STPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTI  247 (321)
T ss_dssp             CSCEEEEEESSCHHHHHHHGGGEEEEEEEEECCST
T ss_pred             ccCCCEEEECCCcHHHHHHHHhccCCCEEEEeCCC
Confidence            6788999999997654 123567888888888743

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=96.34  E-value=0.018  Score=51.25  Aligned_cols=79  Identities=20%  Similarity=0.265  Sum_probs=54.2

Q ss_pred             CcCCcEEEEEcC----------------CccchHHHHHHHhhCCCeEEEEcCCCC-------------Ch-------hhh
Q 022295          164 TIKGKRAVVVGR----------------SNIVGLPVSLLLLKADATVTIVHSHTT-------------DP-------ESI  207 (299)
Q Consensus       164 ~l~gk~vvViG~----------------s~~vG~pla~lL~~~gatVtv~~~~t~-------------~l-------~~~  207 (299)
                      +++||+|+|-|.                |+-.|..+|..|+.+||.|+++++.+.             +.       .+.
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~~~~~~v~~~   84 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   84 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccccCCCCeEEccCcHHHHHHHHHHh
Confidence            578999999998                355699999999999999999875421             11       133


Q ss_pred             ccCCcEEEEecCCCCc----CCCCccCC---C--eEEEEeeccC
Q 022295          208 VREADIVIAAAGQAMM----IKGSWIKP---G--AAVIDVGTNA  242 (299)
Q Consensus       208 ~~~ADIVIsa~g~p~~----i~~~~vk~---g--avVIDvg~~~  242 (299)
                      ....|++|.++|...+    ...+-+|+   +  ...+.+--+|
T Consensus        85 ~~~~Dili~~Aav~d~~p~~~~~~KIkk~~~~~~~l~l~L~~~p  128 (226)
T 1u7z_A           85 VQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNP  128 (226)
T ss_dssp             GGGCSEEEECCBCCSEEESSCCSSCC-------CEEEEEEEECC
T ss_pred             cCCCCEEEECCcccCCCCccCChHHhccccccCCceEEEEeecH
Confidence            5679999998886442    33344665   2  4566666554

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.34  E-value=0.0066  Score=55.47  Aligned_cols=70  Identities=19%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------------
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------------  202 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------------  202 (299)
                      .+|.|+.-+..-+.     +.+++|+|.|++|.+|+.++..|+++|.+|+++.+...                       
T Consensus         9 ~~~~~~~~~~~~~~-----~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (351)
T 3ruf_A            9 IYMSRYEEITQQLI-----FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCF   83 (351)
T ss_dssp             -CCHHHHHHHHHHH-----HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEE
T ss_pred             HHHHHHhhHHhhCC-----CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEE
Confidence            34555666555443     57899999999999999999999999999999876421                       


Q ss_pred             ---------ChhhhccCCcEEEEecCC
Q 022295          203 ---------DPESIVREADIVIAAAGQ  220 (299)
Q Consensus       203 ---------~l~~~~~~ADIVIsa~g~  220 (299)
                               .+.+.++.+|+||..+|.
T Consensus        84 ~~~Dl~d~~~~~~~~~~~d~Vih~A~~  110 (351)
T 3ruf_A           84 IEGDIRDLTTCEQVMKGVDHVLHQAAL  110 (351)
T ss_dssp             EECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             EEccCCCHHHHHHHhcCCCEEEECCcc
Confidence                     134567789999988774

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.33  E-value=0.00099  Score=62.79  Aligned_cols=72  Identities=18%  Similarity=0.225  Sum_probs=54.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhcc----CCcEEEEecCCCC---cCC-
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVR----EADIVIAAAGQAM---MIK-  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~----~ADIVIsa~g~p~---~i~-  225 (299)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++    ++|+||.+++...   ++. 
T Consensus         9 ~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl~~   87 (341)
T 3ktd_A            9 RPVCILGLGLI-GGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLDA   87 (341)
T ss_dssp             SCEEEECCSHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHHH
T ss_pred             CEEEEEeecHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHHHH
Confidence            57999998875 9999999999999999998652              34455555    4699999998422   121 


Q ss_pred             -CCccCCCeEEEEeecc
Q 022295          226 -GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       226 -~~~vk~gavVIDvg~~  241 (299)
                       .. .++|++|+|++..
T Consensus        88 l~~-~~~~~iv~Dv~Sv  103 (341)
T 3ktd_A           88 VHT-HAPNNGFTDVVSV  103 (341)
T ss_dssp             HHH-HCTTCCEEECCSC
T ss_pred             HHc-cCCCCEEEEcCCC
Confidence             11 3789999999854

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.31  E-value=0.0036  Score=53.68  Aligned_cols=54  Identities=19%  Similarity=0.293  Sum_probs=44.1

Q ss_pred             cEEEEEcCCccchHHHHHHHh-hCCCeEEEEcCCCC------------------------ChhhhccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLL-KADATVTIVHSHTT------------------------DPESIVREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~-~~gatVtv~~~~t~------------------------~l~~~~~~ADIVIsa~g~p  221 (299)
                      |+++|.|+++-+|+.++..|+ ++|++|+++.++..                        ++.+.++.+|+||.++|..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            679999998889999999999 89999999876532                        1235677899999888864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.31  E-value=0.0023  Score=53.72  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCCC------------------CC---hhhh--ccCCcEEEEec
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSHT------------------TD---PESI--VREADIVIAAA  218 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~t------------------~~---l~~~--~~~ADIVIsa~  218 (299)
                      .++.+.+++|+|.|. +|..++..|.+. |+.|++++++.                  .+   +.+.  +.+||+||.++
T Consensus        35 ~~~~~~~v~IiG~G~-~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~  113 (183)
T 3c85_A           35 INPGHAQVLILGMGR-IGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM  113 (183)
T ss_dssp             BCCTTCSEEEECCSH-HHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred             cCCCCCcEEEECCCH-HHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence            457788999999877 599999999998 99999997541                  11   2233  67889999988


Q ss_pred             CCCC
Q 022295          219 GQAM  222 (299)
Q Consensus       219 g~p~  222 (299)
                      +.+.
T Consensus       114 ~~~~  117 (183)
T 3c85_A          114 PHHQ  117 (183)
T ss_dssp             SSHH
T ss_pred             CChH
Confidence            8643

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.31  E-value=0.0027  Score=62.32  Aligned_cols=72  Identities=22%  Similarity=0.330  Sum_probs=54.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------------CChhhhccCCcE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------------TDPESIVREADI  213 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------------~~l~~~~~~ADI  213 (299)
                      -+|.|||.|- ||.++|..|++.|.+|+.++++.                                  .++.+.+++||+
T Consensus         9 ~~I~VIG~G~-vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            9 MNLTIIGSGS-VGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             ceEEEECcCH-HHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            5899999877 59999999999999999997531                                  122345778999


Q ss_pred             EEEecCCC---------CcCC------CCccCCCeEEEEeec
Q 022295          214 VIAAAGQA---------MMIK------GSWIKPGAAVIDVGT  240 (299)
Q Consensus       214 VIsa~g~p---------~~i~------~~~vk~gavVIDvg~  240 (299)
                      ||.+++.|         ..+.      ...+++|++|++.+.
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ST  129 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKST  129 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            99999886         2211      134678999988753

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.30  E-value=0.0047  Score=53.81  Aligned_cols=69  Identities=19%  Similarity=0.213  Sum_probs=51.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEE-EcCCCC---------------ChhhhccCCcEEEEecCCCC---c---CC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTI-VHSHTT---------------DPESIVREADIVIAAAGQAM---M---IK  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv-~~~~t~---------------~l~~~~~~ADIVIsa~g~p~---~---i~  225 (299)
                      .++.|||.|.+ |..++..|.+.|..|++ ++++..               +..+.++++|+||.++....   .   +.
T Consensus        24 mkI~IIG~G~m-G~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~  102 (220)
T 4huj_A           24 TTYAIIGAGAI-GSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIADIVTQVS  102 (220)
T ss_dssp             CCEEEEECHHH-HHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHHHHHHHhh
Confidence            68999997775 99999999999999998 665421               22345788999999997322   1   22


Q ss_pred             CCccCCCeEEEEeec
Q 022295          226 GSWIKPGAAVIDVGT  240 (299)
Q Consensus       226 ~~~vk~gavVIDvg~  240 (299)
                      +  + ++.+|||+.-
T Consensus       103 ~--~-~~~ivi~~~~  114 (220)
T 4huj_A          103 D--W-GGQIVVDASN  114 (220)
T ss_dssp             C--C-TTCEEEECCC
T ss_pred             c--c-CCCEEEEcCC
Confidence            2  3 5889999874

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.29  E-value=0.024  Score=53.78  Aligned_cols=169  Identities=14%  Similarity=0.117  Sum_probs=109.5

Q ss_pred             ccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCC
Q 022295           52 DSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG  128 (299)
Q Consensus        52 ~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg  128 (299)
                      .|-.=--+=..++.++|.++.++.-. +.+   -|-+.+.++-|+.-  +|+|.+--|-.  -..+.+.+..       +
T Consensus        77 ~STRTR~SFE~A~~~LGg~vi~l~~~-~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~--~~~~~lA~~s-------~  144 (359)
T 2w37_A           77 SSTRTRSAFTTASIDLGAHPEYLGQN-DIQLGKKESTSDTAKVLGSM--FDGIEFRGFKQ--SDAEILARDS-------G  144 (359)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTT-TCCTTTSSCHHHHHHHHHHH--CSEEEEESSCH--HHHHHHHHHS-------S
T ss_pred             CCccHHHHHHHHHHHcCCeEEEeCCc-cccCCCCcCHHHHHHHHHHh--cCEEEEecCCh--HHHHHHHHhC-------C
Confidence            34333335578999999999888532 211   12344555544442  57899887632  1112222221       2


Q ss_pred             CCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC------
Q 022295          129 FHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH------  200 (299)
Q Consensus       129 ~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~------  200 (299)
                      +-.+|.|       .+.+.||=+.+ ++.+.++.| +++|.+++++|-+ +-|.+.++.+|...|++|++|.-.      
T Consensus       145 vPVINa~-------~~~~HPtQaLaDl~Ti~E~~g-~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~  216 (359)
T 2w37_A          145 VPVWNGL-------TDEWHPTQMLADFMTVKENFG-KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTE  216 (359)
T ss_dssp             SCEEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCH
T ss_pred             CCEEcCC-------CCCCCccHHHHHHHHHHHHhC-CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCH
Confidence            4556743       24568998888 555555555 8999999999986 567999999999999999999522      


Q ss_pred             -------------------CCChhhhccCCcEEEEec----CCC----------Cc-CCCCcc---C---CCeEEEEeec
Q 022295          201 -------------------TTDPESIVREADIVIAAA----GQA----------MM-IKGSWI---K---PGAAVIDVGT  240 (299)
Q Consensus       201 -------------------t~~l~~~~~~ADIVIsa~----g~p----------~~-i~~~~v---k---~gavVIDvg~  240 (299)
                                         +.++.+.++.||+|.+-+    |..          .+ |+.+.+   +   |+++++=.+.
T Consensus       217 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          217 ETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             HHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence                               346778899999999733    321          12 555554   5   6788877764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.29  E-value=0.0027  Score=57.21  Aligned_cols=71  Identities=20%  Similarity=0.358  Sum_probs=51.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------------Chhhhcc---CCcEEEEec
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------------DPESIVR---EADIVIAAA  218 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------------~l~~~~~---~ADIVIsa~  218 (299)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++++..                          +..+...   ++|+||.++
T Consensus         4 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v   82 (316)
T 2ew2_A            4 MKIAIAGAGAM-GSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT   82 (316)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred             CeEEEECcCHH-HHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence            47999998775 99999999999999999976421                          1112233   899999999


Q ss_pred             CCCCc---CC--CCccCCCeEEEEee
Q 022295          219 GQAMM---IK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       219 g~p~~---i~--~~~vk~gavVIDvg  239 (299)
                      +.+.+   +.  ...++++++|+++.
T Consensus        83 ~~~~~~~v~~~l~~~l~~~~~iv~~~  108 (316)
T 2ew2_A           83 KAQQLDAMFKAIQPMITEKTYVLCLL  108 (316)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             ccccHHHHHHHHHHhcCCCCEEEEec
Confidence            85431   11  23567889999985

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.27  E-value=0.0062  Score=53.02  Aligned_cols=37  Identities=32%  Similarity=0.521  Sum_probs=34.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCC
Confidence            4689999999999999999999999999999998876

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.27  E-value=0.005  Score=60.02  Aligned_cols=59  Identities=22%  Similarity=0.327  Sum_probs=47.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-CC-----------------hhhhccCCcEEEEecCCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-TD-----------------PESIVREADIVIAAAGQAM  222 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-~~-----------------l~~~~~~ADIVIsa~g~p~  222 (299)
                      ++++||+|+|||.|. +|...+..|++.||.|+++.... +.                 -.+.+..+|+||.++|.|.
T Consensus         8 ~~l~~~~vlVvGgG~-va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~~   84 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGD-VAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT   84 (457)
T ss_dssp             ECCBTCEEEEECCSH-HHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred             EECCCCEEEEECCCH-HHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCHH
Confidence            468999999999777 59999999999999999987532 11                 1134668999999999874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.26  E-value=0.003  Score=58.06  Aligned_cols=95  Identities=14%  Similarity=0.017  Sum_probs=64.7

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------CChhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------TDPES  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------~~l~~  206 (299)
                      +||.....+..|.+..-.-.|++|+|.|+++.+|..+++++...|++|+++.++.                    .++.+
T Consensus       126 l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~  205 (333)
T 1v3u_A          126 IGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEE  205 (333)
T ss_dssp             TSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHH
T ss_pred             hCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHH
Confidence            4544445556664443334799999999966679999999999999998876431                    22222


Q ss_pred             hc-----cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          207 IV-----READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       207 ~~-----~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                      .+     ...|++|.++|.+.+- --+.++++..++.+|..
T Consensus       206 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          206 ALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             HHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             HHHHHhCCCCeEEEECCChHHHHHHHHHHhcCCEEEEEecc
Confidence            22     2479999999865321 22567888888888864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.26  E-value=0.0055  Score=56.44  Aligned_cols=70  Identities=21%  Similarity=0.243  Sum_probs=53.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-----------------------------CChhhhccCCcEEEEec
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-----------------------------TDPESIVREADIVIAAA  218 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-----------------------------~~l~~~~~~ADIVIsa~  218 (299)
                      .+|.|||.|. +|..++..|.+.|.+|+++.++.                             .++.+.+.++|+||.++
T Consensus         5 mki~iiG~G~-~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   83 (359)
T 1bg6_A            5 KTYAVLGLGN-GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   83 (359)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CeEEEECCCH-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence            5899999877 59999999999999999997531                             13445577899999999


Q ss_pred             CCCCc---CC--CCccCCCeEEEEe
Q 022295          219 GQAMM---IK--GSWIKPGAAVIDV  238 (299)
Q Consensus       219 g~p~~---i~--~~~vk~gavVIDv  238 (299)
                      +.+..   +.  ...++++++|++.
T Consensus        84 ~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           84 PAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             CchHHHHHHHHHHHhCCCCCEEEEc
Confidence            86542   21  2346778888887

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.26  E-value=0.0056  Score=57.15  Aligned_cols=55  Identities=22%  Similarity=0.276  Sum_probs=44.8

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEecC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAAG  219 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g  219 (299)
                      ..+|+|||+|. +|.++|..|+..|. +|++.+..                          |.++++.+++||+||.++|
T Consensus         9 ~~kI~VIGaG~-vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g   87 (331)
T 1pzg_A            9 RKKVAMIGSGM-IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   87 (331)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence            35899999855 69999999998886 88888643                          2466668999999999998


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      .|.
T Consensus        88 ~p~   90 (331)
T 1pzg_A           88 LTK   90 (331)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.25  E-value=0.0054  Score=52.45  Aligned_cols=53  Identities=30%  Similarity=0.355  Sum_probs=44.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------ChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------DPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~l~~~~~~ADIVIsa~g~  220 (299)
                      ++|+|.|+++.+|+.++..|+++|++|+++.++..                    ++.+.++..|+||.++|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence            68999999999999999999999999999976521                    134667889999988874

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.25  E-value=0.0046  Score=55.33  Aligned_cols=57  Identities=30%  Similarity=0.351  Sum_probs=45.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------Chh-------------hhccCCcEEEEecCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------DPE-------------SIVREADIVIAAAGQ  220 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------~l~-------------~~~~~ADIVIsa~g~  220 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++..          |+.             +....-|+||..+|.
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg~  104 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGV  104 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            578999999999998999999999999999999876532          111             112367999988884

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.22  E-value=0.0043  Score=53.06  Aligned_cols=53  Identities=17%  Similarity=0.244  Sum_probs=43.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------ChhhhccCCcEEEEecCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------DPESIVREADIVIAAAGQA  221 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~l~~~~~~ADIVIsa~g~p  221 (299)
                      +|+|.|+++.+|+.++..|+++|++|+++.++..                    ++.+.++..|+||..+|..
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            6999999999999999999999999999876521                    2345577789999888753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.22  E-value=0.005  Score=54.86  Aligned_cols=70  Identities=13%  Similarity=0.123  Sum_probs=52.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---------------------hhhhccCCcEEEEecCCCCc---C
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---------------------PESIVREADIVIAAAGQAMM---I  224 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---------------------l~~~~~~ADIVIsa~g~p~~---i  224 (299)
                      +|.|||.|.+ |.+++..|.+.|.+|++++++...                     ..+.++.+|+||.+++.+.+   +
T Consensus         2 ~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~   80 (291)
T 1ks9_A            2 KITVLGCGAL-GQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (291)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             eEEEECcCHH-HHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhHHHHH
Confidence            6899998775 999999999999999999765321                     12445689999999986542   1


Q ss_pred             C--CCccCCCeEEEEee
Q 022295          225 K--GSWIKPGAAVIDVG  239 (299)
Q Consensus       225 ~--~~~vk~gavVIDvg  239 (299)
                      .  ...++++++|+|+.
T Consensus        81 ~~l~~~l~~~~~vv~~~   97 (291)
T 1ks9_A           81 KSLASTLPVTTPILLIH   97 (291)
T ss_dssp             HHHHTTSCTTSCEEEEC
T ss_pred             HHHHhhCCCCCEEEEec
Confidence            1  13467788888874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.22  E-value=0.0044  Score=57.34  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=66.9

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPES  206 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~  206 (299)
                      .+||.....+..|++.++ -.|++|+|+|+|+ +|..+++++...|++|+.+.++.                   .++.+
T Consensus       145 ~l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~  222 (339)
T 1rjw_A          145 PIFCAGVTTYKALKVTGA-KPGEWVAIYGIGG-LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAK  222 (339)
T ss_dssp             GGGTHHHHHHHHHHHHTC-CTTCEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHH
T ss_pred             hhhhhHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHH
Confidence            456665556677776643 3689999999977 79999999999999988876431                   22222


Q ss_pred             h----ccCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          207 I----VREADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       207 ~----~~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                      .    +..+|+||.++|.+..+.  -+.++++..++.+|..
T Consensus       223 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          223 FMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             HHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHHHhCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEeccc
Confidence            2    246899999999754432  2457888888888864

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.22  E-value=0.019  Score=53.82  Aligned_cols=169  Identities=18%  Similarity=0.180  Sum_probs=110.6

Q ss_pred             ccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCC
Q 022295           52 DSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG  128 (299)
Q Consensus        52 ~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg  128 (299)
                      .|-.=--+=..++.++|.++.++.- .+.+   -|-+.+.++-|+.=  +|+|.+-.|-...+  ..+.+..    +   
T Consensus        68 pSTRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~iviR~~~~~~~--~~lA~~~----~---  135 (325)
T 1vlv_A           68 RSTRTRLAFETAFAEEGGHPIFLSP-NDIHLGAKESLEDTARVLGRM--VDAIMFRGYKQETV--EKLAEYS----G---  135 (325)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECT-TTCCTTTSSCHHHHHHHHHTT--CSEEEEESSCHHHH--HHHHHHH----C---
T ss_pred             CCcchHHHHHHHHHHcCCeEEEECC-ccccCCCCcCHHHHHHHHHHh--CCEEEEECCChHHH--HHHHHhC----C---
Confidence            3433333557899999999888863 2221   23477777777764  68999987632111  2222211    2   


Q ss_pred             CCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC------
Q 022295          129 FHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH------  200 (299)
Q Consensus       129 ~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~------  200 (299)
                      +-.+|.     +  .+...||=+.+ ++.+.++.| +++|.+++++|-+ +-|.+.++.+|...|++|+++.-.      
T Consensus       136 vPVINa-----~--~~~~HPtQaLaDl~Ti~e~~g-~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~  207 (325)
T 1vlv_A          136 VPVYNG-----L--TDEFHPTQALADLMTIEENFG-RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRS  207 (325)
T ss_dssp             SCEEES-----C--CSSCCHHHHHHHHHHHHHHHS-CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCH
T ss_pred             CCEEeC-----C--CCCCCcHHHHHHHHHHHHHhC-CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCH
Confidence            345563     2  23578998888 555555554 8999999999986 567999999999999999999632      


Q ss_pred             -------------------CCChhhhccCCcEEEEec----CC----C-------Cc-CCCCcc----CCCeEEEEeec
Q 022295          201 -------------------TTDPESIVREADIVIAAA----GQ----A-------MM-IKGSWI----KPGAAVIDVGT  240 (299)
Q Consensus       201 -------------------t~~l~~~~~~ADIVIsa~----g~----p-------~~-i~~~~v----k~gavVIDvg~  240 (299)
                                         +.++.+.+++||+|.+-.    |.    +       .+ ++.+.+    +|++++.=.+.
T Consensus       208 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP  286 (325)
T 1vlv_A          208 DVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLP  286 (325)
T ss_dssp             HHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             HHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCC
Confidence                               345678899999999732    21    1       12 455444    66777777664

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.19  E-value=0.0049  Score=54.51  Aligned_cols=65  Identities=22%  Similarity=0.243  Sum_probs=47.9

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC---------------CChhhhccCCcEEEEecCCCCc----CCCCc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT---------------TDPESIVREADIVIAAAGQAMM----IKGSW  228 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~~----i~~~~  228 (299)
                      +|.|||.|.+ |..++..|.+.| ..|++++++.               .+..+.+ ++|+||.+++ |..    +. +.
T Consensus         2 ~i~iiG~G~m-G~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~-~l   77 (263)
T 1yqg_A            2 NVYFLGGGNM-AAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACK-NI   77 (263)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHT-TC
T ss_pred             EEEEECchHH-HHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHH-Hh
Confidence            6899998775 999999999999 8999998652               1333556 8999999998 431    11 10


Q ss_pred             c-CCCeEEEEe
Q 022295          229 I-KPGAAVIDV  238 (299)
Q Consensus       229 v-k~gavVIDv  238 (299)
                      . + +.+|+|+
T Consensus        78 ~~~-~~ivv~~   87 (263)
T 1yqg_A           78 RTN-GALVLSV   87 (263)
T ss_dssp             CCT-TCEEEEC
T ss_pred             ccC-CCEEEEe
Confidence            0 4 7888887

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.19  E-value=0.0054  Score=52.85  Aligned_cols=56  Identities=13%  Similarity=0.059  Sum_probs=45.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhC--CCeEEEEcCCC--------------------CChhhhccCCcEEEEecCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKA--DATVTIVHSHT--------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~--gatVtv~~~~t--------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      ..+++|+|.|+++.+|+.++..|+++  |++|+++.++.                    ..+.+.++..|+||..+|.
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            46899999999999999999999999  79999887641                    1234567788999988774

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.17  E-value=0.0057  Score=56.38  Aligned_cols=68  Identities=19%  Similarity=0.296  Sum_probs=50.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------------CChhhhccCCcEEEEecCCCCcC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------------TDPESIVREADIVIAAAGQAMMI  224 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~~i  224 (299)
                      ..|+|.|||.|.+ |.++|..|+ .|..|++.+++.                     .++.+ +++||+||.+++-..-+
T Consensus        11 ~~~~V~vIG~G~M-G~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           11 HHMKVFVIGAGLM-GRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             -CCEEEEECCSHH-HHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             CCCeEEEEeeCHH-HHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            4599999998876 999999999 999999998652                     23434 78999999999854311


Q ss_pred             CC------CccCCCeEEEE
Q 022295          225 KG------SWIKPGAAVID  237 (299)
Q Consensus       225 ~~------~~vk~gavVID  237 (299)
                      +.      +-+ |++++++
T Consensus        88 k~~l~~~l~~~-~~~Ilas  105 (293)
T 1zej_A           88 KVEVLREVERL-TNAPLCS  105 (293)
T ss_dssp             HHHHHHHHHTT-CCSCEEE
T ss_pred             HHHHHHHHhcC-CCCEEEE
Confidence            11      223 8888864

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=96.16  E-value=0.0041  Score=62.09  Aligned_cols=95  Identities=15%  Similarity=0.228  Sum_probs=76.9

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhh----CCC-------eEEEEcCC--------C------
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK----ADA-------TVTIVHSH--------T------  201 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~----~ga-------tVtv~~~~--------t------  201 (299)
                      --+|..|++..|+-.|.+++..++++.|+|.+ |-.+|.+|..    +|.       .+++|+++        .      
T Consensus       264 a~V~lAgllnAlki~gk~l~d~riv~~GAGaA-gigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k  342 (564)
T 1pj3_A          264 AAVALAGLLAAQKVISKPISEHKILFLGAGEA-ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQ  342 (564)
T ss_dssp             HHHHHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTT
T ss_pred             HHHHHHHHHHHHHHhCCcHhHcEEEEeCCCHH-HHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCcccchHHH
Confidence            34567889999999999999999999999998 9999999885    783       58999753        0      


Q ss_pred             ------------CChhhhcc--CCcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295          202 ------------TDPESIVR--EADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV  243 (299)
Q Consensus       202 ------------~~l~~~~~--~ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~  243 (299)
                                  .+|.+.++  .+|++|...+.|+.+++|||+      +.-+|+=++ ||.
T Consensus       343 ~~~A~~~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  403 (564)
T 1pj3_A          343 EPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS-NPT  403 (564)
T ss_dssp             GGGCBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHHHHhcCccccCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                        24778888  699999998899999999985      466776666 443

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.14  E-value=0.0047  Score=56.84  Aligned_cols=94  Identities=16%  Similarity=0.130  Sum_probs=63.4

Q ss_pred             cCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChh---
Q 022295          148 PCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPE---  205 (299)
Q Consensus       148 PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~---  205 (299)
                      ||.....+..|.+..---.|++|+|.|+++.+|..+++++...|++|+.+.++.                   .+..   
T Consensus       127 ~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i  206 (333)
T 1wly_A          127 MLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVV  206 (333)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             hhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHH
Confidence            443444555665443334789999999866679999999999999988886542                   1211   


Q ss_pred             -hhc--cCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          206 -SIV--READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 -~~~--~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                       +.+  ...|+||.++|.+.+ ---+.++++..++.+|..
T Consensus       207 ~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~  246 (333)
T 1wly_A          207 REITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHA  246 (333)
T ss_dssp             HHHHTTCCEEEEEECSCTTTHHHHHHTEEEEEEEEECCCT
T ss_pred             HHHhCCCCCeEEEECCcHHHHHHHHHhhccCCEEEEEecC
Confidence             122  247999999987322 122567888888888864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.14  E-value=0.0039  Score=61.13  Aligned_cols=72  Identities=17%  Similarity=0.241  Sum_probs=54.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhhhc---cCCcEEEEecCCCC-c-
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPESIV---READIVIAAAGQAM-M-  223 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~~~---~~ADIVIsa~g~p~-~-  223 (299)
                      .+|.|||.|.+ |.+++..|++.|.+|++++++.                   .++.+.+   +++|+||.+++.+. + 
T Consensus         3 m~IgvIG~G~m-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~   81 (482)
T 2pgd_A            3 ADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (482)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CeEEEEChHHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHH
Confidence            46999998875 9999999999999999998642                   2344554   48999999998753 1 


Q ss_pred             --CC--CCccCCCeEEEEeec
Q 022295          224 --IK--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       224 --i~--~~~vk~gavVIDvg~  240 (299)
                        +.  ...+++|.+|||++.
T Consensus        82 ~vl~~l~~~l~~g~iII~~s~  102 (482)
T 2pgd_A           82 NFIEKLVPLLDIGDIIIDGGN  102 (482)
T ss_dssp             HHHHHHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHhhcCCCCEEEECCC
Confidence              21  134678999999863

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.11  E-value=0.012  Score=52.95  Aligned_cols=54  Identities=19%  Similarity=0.204  Sum_probs=44.8

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------ChhhhccCCcEEEEecCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------DPESIVREADIVIAAAGQ  220 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------~l~~~~~~ADIVIsa~g~  220 (299)
                      +++|+|.|+++.+|+.++..|+++|.+|+++.+...                 .+.+.++.+|+||..++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence            478999999999999999999999999999877622                 134567789999987774

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.11  E-value=0.0062  Score=53.83  Aligned_cols=53  Identities=15%  Similarity=0.265  Sum_probs=44.0

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCC----CeEEEEcCCC--------CChhhhccCCcEEEEecCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKAD----ATVTIVHSHT--------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~g----atVtv~~~~t--------~~l~~~~~~ADIVIsa~g~  220 (299)
                      ..+|.|||.|.+ |.+++..|.+.|    ..|++++++.        .+..+.++++|+||.++..
T Consensus         4 ~m~i~iiG~G~m-G~~~a~~l~~~g~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~   68 (262)
T 2rcy_A            4 NIKLGFMGLGQM-GSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKP   68 (262)
T ss_dssp             SSCEEEECCSHH-HHHHHHHHHHHTSSCGGGEEEECSSCCSSSSEECSCHHHHHHHCSEEEECSCT
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCCCCCeEEEEeCCcccCceEEeCCHHHHHhcCCEEEEEeCH
Confidence            357999998775 999999999888    6899998753        3566778899999999984

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.11  E-value=0.016  Score=53.96  Aligned_cols=94  Identities=18%  Similarity=0.231  Sum_probs=66.8

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------Chh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------DPE  205 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~l~  205 (299)
                      .+||.....+..|++.++ -.|++|+|+|+| .+|..+++++...|++|+.+.+...                    ++.
T Consensus       160 ~l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG-~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~  237 (360)
T 1piw_A          160 PLLCGGLTVYSPLVRNGC-GPGKKVGIVGLG-GIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWG  237 (360)
T ss_dssp             GGGTHHHHHHHHHHHTTC-STTCEEEEECCS-HHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHH
T ss_pred             hhhhhHHHHHHHHHHcCC-CCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHH
Confidence            356666666777776443 368999999994 5799999999889999888764422                    222


Q ss_pred             hhc-cCCcEEEEecCC--CCcCC--CCccCCCeEEEEeecc
Q 022295          206 SIV-READIVIAAAGQ--AMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 ~~~-~~ADIVIsa~g~--p~~i~--~~~vk~gavVIDvg~~  241 (299)
                      +.+ ..+|+||.++|.  +..+.  -+.++++..++.+|..
T Consensus       238 ~~~~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          238 EKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             HHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCC
T ss_pred             HHhhcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCC
Confidence            222 358999999998  65543  3567888888888864

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.10  E-value=0.0054  Score=54.22  Aligned_cols=37  Identities=35%  Similarity=0.495  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLD   45 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998764

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.10  E-value=0.06  Score=50.43  Aligned_cols=210  Identities=10%  Similarity=0.039  Sum_probs=126.1

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcC--C---CC-cEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCC--C
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKY--G---KV-PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV--S   81 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~--~---~~-P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~   81 (299)
                      .+|+-..+.++=.+.|-+...+|++..  +   .+ -.++.+ + ..|+-..-+ +=..++.++|.++.+..|..+.  .
T Consensus         9 hlls~~dls~~ei~~ll~~A~~lk~~~~~~~~~L~gk~la~l-F-~e~STRTR~-SFE~A~~~LGg~~i~~~l~~~ss~~   85 (328)
T 3grf_A            9 HLLTISALCPKELAYLIDRALDMKKNPAKYTARAANKTLLAF-F-AKPSLRTRV-SLETAMTRLGGHAIYYELGANSNVG   85 (328)
T ss_dssp             CBSSGGGSCHHHHHHHHHHHHHHHHCGGGGTTTTTTCEEEEE-E-SSCCHHHHH-HHHHHHHHHTCEEEEEEC-------
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhhhhccCcccCCCEEEEE-e-cCCCchHHH-HHHHHHHHCCCeEEccccCccccCC
Confidence            455555555433344444444454321  1   11 244444 3 234443333 4578899999999885454321  1


Q ss_pred             -HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHH
Q 022295           82 -EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLK  159 (299)
Q Consensus        82 -~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~  159 (299)
                       -|-+.+.++-|+.=  +|+|.+-.|-.  -....+.+..    +   +-.+|.|       .+...||=+.+ ++.+.+
T Consensus        86 kgEsl~DTarvls~~--~D~iviR~~~~--~~~~~lA~~~----~---vPVINag-------~~~~HPtQaLaDl~Ti~e  147 (328)
T 3grf_A           86 GKETVQDTAEVFSRM--VDICTARLATK--EMMREMAQHA----S---VPCINAL-------DDFGHPLQMVCDFMTIKE  147 (328)
T ss_dssp             ---CHHHHHHHHTTT--CSEEEEECSSH--HHHHHHHHHC----S---SCEEESS-------CSSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhh--CCEEEEecCCh--hHHHHHHHhC----C---CCEEeCC-------CCCCCcHHHHHHHHHHHH
Confidence             24477788888764  89999987732  1112222222    2   3455643       23568998888 666666


Q ss_pred             hhCC------CcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-----------------------------CCC
Q 022295          160 RSGV------TIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-----------------------------TTD  203 (299)
Q Consensus       160 ~~~~------~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-----------------------------t~~  203 (299)
                      +.|.      +++|++++++|-+ +.|.+.++.+|...|++|+++.-.                             +.+
T Consensus       148 ~~g~~~~~~~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d  227 (328)
T 3grf_A          148 KFTAAGEFSNGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHD  227 (328)
T ss_dssp             HHHHTTCCTTTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESS
T ss_pred             HhCCccccccccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcC
Confidence            6662      7999999999987 668999999999899999998532                             135


Q ss_pred             hhhhccCCcEEEEe----cC-CC-----------Cc-CCCCcc---CCCeEEEEeec
Q 022295          204 PESIVREADIVIAA----AG-QA-----------MM-IKGSWI---KPGAAVIDVGT  240 (299)
Q Consensus       204 l~~~~~~ADIVIsa----~g-~p-----------~~-i~~~~v---k~gavVIDvg~  240 (299)
                      +.+.+++||+|.+-    .| ..           .+ ++.+.+   +|+++++=.+.
T Consensus       228 ~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lP  284 (328)
T 3grf_A          228 CKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLP  284 (328)
T ss_dssp             HHHHHTTCSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSC
T ss_pred             HHHHhcCCCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCCC
Confidence            56788999999974    34 11           12 555544   57888887764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.10  E-value=0.0032  Score=58.67  Aligned_cols=95  Identities=16%  Similarity=0.142  Sum_probs=65.2

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPESI  207 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~~  207 (299)
                      +||....++..|.+..---.|++|+|+|+++.+|..+++++...|++|+++.++                   ..++.+.
T Consensus       148 l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~  227 (353)
T 4dup_A          148 LPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAV  227 (353)
T ss_dssp             SHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHH
Confidence            444444455555433333478999999776778999999999999998887643                   1233333


Q ss_pred             cc-----CCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          208 VR-----EADIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       208 ~~-----~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                      ++     ..|+||.++|.+.+ -.-+.++++..++.+|..
T Consensus       228 ~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~  267 (353)
T 4dup_A          228 IKAETGQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFL  267 (353)
T ss_dssp             HHHHHSSCEEEEEESCCGGGHHHHHHTEEEEEEEEECCCT
T ss_pred             HHHHhCCCceEEEECCCHHHHHHHHHHhccCCEEEEEEec
Confidence            32     48999999997643 123567888888888864

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.09  E-value=0.0082  Score=53.69  Aligned_cols=39  Identities=31%  Similarity=0.285  Sum_probs=34.9

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..+++||+|+|.|+++-+|+.++..|+++|++|.++.++
T Consensus         9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~   47 (269)
T 3vtz_A            9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLD   47 (269)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457899999999999989999999999999999998765

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.09  E-value=0.0097  Score=54.85  Aligned_cols=36  Identities=14%  Similarity=0.386  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhh--CCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLK--ADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~--~gatVtv~~~  199 (299)
                      ++++++|+|.|+++.+|+.++..|++  +|++|+++.+
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            57899999999999999999999999  8999999875

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.08  E-value=0.007  Score=57.07  Aligned_cols=57  Identities=12%  Similarity=0.296  Sum_probs=43.7

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCC-----------------------CCChhhhccCCcEEEEecCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSH-----------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~-----------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      .+++|+|||++|.||.++|..|+.+|.  +|.+++..                       +.++.+.+++||+||.+.|.
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG~   86 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGA   86 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccCC
Confidence            568999999855679999998888873  78888643                       23566789999999999996


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        87 p~   88 (343)
T 3fi9_A           87 PR   88 (343)
T ss_dssp             --
T ss_pred             CC
Confidence            63

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.08  E-value=0.015  Score=55.22  Aligned_cols=155  Identities=16%  Similarity=0.154  Sum_probs=100.1

Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHc
Q 022295           42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLG  118 (299)
Q Consensus        42 Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~  118 (299)
                      ++.+-  ..|+...-+ +=..++.++|.++.++.-. +.+   -|-+.+.++-|..-  +|+|.+--|-.      ..++
T Consensus        73 la~lF--~epSTRTR~-SFE~A~~~LGg~vi~l~~~-~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~------~~~~  140 (358)
T 4h31_A           73 IALIF--EKASTRTRC-AFEVAAFDQGAQVTYIGPS-GSQIGDKESMKDTARVLGRM--YDGIQYRGFGQ------AIVE  140 (358)
T ss_dssp             EEEEE--SSCCSHHHH-HHHHHHHHTTCEEEEECSS-SSCBTTTBCHHHHHHHHHHH--CSEEEEECSCH------HHHH
T ss_pred             EEEEe--CCCChhhHH-HHHHHHHHcCCeEEECCcc-cccccCccchhHHHHHhhcc--CceeEecccch------hHHH
Confidence            44443  344555544 4477899999998766532 221   23466666665553  67898876522      2222


Q ss_pred             cCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhC-CCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEE
Q 022295          119 EISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSG-VTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVT  195 (299)
Q Consensus       119 ~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~-~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVt  195 (299)
                      .+...-+|   -..|      |+ .+...||=+.+ ++.+.++.+ ..++|.+|+++|-+ +.|.+.++.++...|++|+
T Consensus       141 ~la~~s~v---PVIN------G~-g~~~HPtQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~  210 (358)
T 4h31_A          141 ELGAFAGV---PVWN------GL-TDEFHPTQILADFLTMLEHSQGKALADIQFAYLGDARNNVGNSLMVGAAKMGMDIR  210 (358)
T ss_dssp             HHHHHSSS---CEEE------SC-CSSCCHHHHHHHHHHHHHTTTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEE
T ss_pred             HhhhhccC---ceEC------CC-CcCCCchHHHHHHHHHHHHhcCCCcCceEEEecCCCCcccchHHHHHHHhcCceEE
Confidence            22221122   2333      22 34568998888 555556554 47999999999954 4579999999999999999


Q ss_pred             EEcCC-------------------------CCChhhhccCCcEEEEec
Q 022295          196 IVHSH-------------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       196 v~~~~-------------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      +|.-.                         +.++.+.+++||+|.+-+
T Consensus       211 ~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~  258 (358)
T 4h31_A          211 LVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDV  258 (358)
T ss_dssp             EESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             EeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEEE
Confidence            99632                         347788999999998643

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.07  E-value=0.01  Score=55.29  Aligned_cols=54  Identities=24%  Similarity=0.411  Sum_probs=43.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEecC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAAG  219 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g  219 (299)
                      .++|+|||+|. +|.++|..|+..|. .|++.+..                          |.++ +.+++||+||.++|
T Consensus        14 ~~kI~ViGaG~-vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           14 RKKISIIGAGQ-IGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            36899999855 69999999999987 88888653                          1344 67899999999998


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      .|.
T Consensus        92 ~p~   94 (328)
T 2hjr_A           92 VPR   94 (328)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.07  E-value=0.0041  Score=58.48  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=53.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC-------CeEEEEcCCCC---------------------------------Chhhh
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD-------ATVTIVHSHTT---------------------------------DPESI  207 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g-------atVtv~~~~t~---------------------------------~l~~~  207 (299)
                      ++|.|||.|.+ |.+++..|++.|       .+|++++++..                                 ++.+.
T Consensus        22 ~kI~iIGaG~m-G~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea  100 (375)
T 1yj8_A           22 LKISILGSGNW-ASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV  100 (375)
T ss_dssp             BCEEEECCSHH-HHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred             CEEEEECcCHH-HHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence            47999998775 999999999888       89999976533                                 12345


Q ss_pred             ccCCcEEEEecCCCC---cCC--CC----ccCCCeEEEEee
Q 022295          208 VREADIVIAAAGQAM---MIK--GS----WIKPGAAVIDVG  239 (299)
Q Consensus       208 ~~~ADIVIsa~g~p~---~i~--~~----~vk~gavVIDvg  239 (299)
                      +++||+||.++....   .+.  ..    .++++++||++.
T Consensus       101 ~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~  141 (375)
T 1yj8_A          101 INDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLT  141 (375)
T ss_dssp             HTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECC
T ss_pred             HcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeC
Confidence            678999999998532   111  23    678899999974

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.06  E-value=0.0055  Score=54.61  Aligned_cols=39  Identities=28%  Similarity=0.369  Sum_probs=32.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   61 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTE   61 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999999998899999999999999999998764

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.05  E-value=0.006  Score=53.99  Aligned_cols=37  Identities=24%  Similarity=0.412  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   41 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADID   41 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.05  E-value=0.0044  Score=53.93  Aligned_cols=57  Identities=16%  Similarity=0.147  Sum_probs=45.9

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCC---------------------ChhhhccCCcEEEEecCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTT---------------------DPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g~p~  222 (299)
                      ..|+|+|.|+++-+|+.++..|+++| ++|+++.++..                     ++.+.++.+|+||.+.|.+.
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            35899999998889999999999999 89998876521                     23466788999998877544

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.04  E-value=0.015  Score=45.65  Aligned_cols=54  Identities=20%  Similarity=0.376  Sum_probs=40.6

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------Ch---h-hhccCCcEEEEecCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------DP---E-SIVREADIVIAAAGQA  221 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------~l---~-~~~~~ADIVIsa~g~p  221 (299)
                      +.+++|+|.|. +|+.++..|.+.|..|+++.++..                   +.   . ..+.++|+||.+++.+
T Consensus         4 ~m~i~IiG~G~-iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   80 (140)
T 1lss_A            4 GMYIIIAGIGR-VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   80 (140)
T ss_dssp             -CEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence            46899999866 599999999999999999975421                   11   1 1256789999998864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.04  E-value=0.0084  Score=58.72  Aligned_cols=74  Identities=23%  Similarity=0.362  Sum_probs=54.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhC--CCeEEEEcCCC---------------C------------------ChhhhccCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA--DATVTIVHSHT---------------T------------------DPESIVREAD  212 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~--gatVtv~~~~t---------------~------------------~l~~~~~~AD  212 (299)
                      .+|.|||.|. ||.++|..|++.  |.+|++++++.               +                  ++.+.+++||
T Consensus        10 mkI~VIG~G~-vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD   88 (481)
T 2o3j_A           10 SKVVCVGAGY-VGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD   88 (481)
T ss_dssp             CEEEEECCST-THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence            4899999877 599999999988  68999997531               1                  2235577899


Q ss_pred             EEEEecCCCCc--------------CC------CCccCCCeEEEEeeccC
Q 022295          213 IVIAAAGQAMM--------------IK------GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       213 IVIsa~g~p~~--------------i~------~~~vk~gavVIDvg~~~  242 (299)
                      +||.+++.|.-              +.      ...+++|++|||.+..+
T Consensus        89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  138 (481)
T 2o3j_A           89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVP  138 (481)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred             EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            99999987631              11      13467899999965443

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.03  E-value=0.0062  Score=53.34  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=34.7

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~   42 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADIN   42 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            46789999999999989999999999999999998765

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.02  E-value=0.011  Score=54.62  Aligned_cols=94  Identities=18%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCCC-------------------CC---
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSHT-------------------TD---  203 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~t-------------------~~---  203 (299)
                      +||.....+..|++.++ -.|++|+|+|+|+.+|..+++++... |++|+++.++.                   .+   
T Consensus       152 l~~~~~ta~~~l~~~~~-~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  230 (347)
T 1jvb_A          152 LTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLA  230 (347)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             chhhHHHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHH
Confidence            56655556677766433 37899999999967899999999998 99988876431                   12   


Q ss_pred             -hhhhc--cCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295          204 -PESIV--READIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       204 -l~~~~--~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~  241 (299)
                       +.+..  ...|+||.++|.+..+  --+.++++..++.+|..
T Consensus       231 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          231 EIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             HHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             HHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCC
Confidence             22333  3589999999976433  23567888888888864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.02  E-value=0.0027  Score=56.92  Aligned_cols=35  Identities=26%  Similarity=0.442  Sum_probs=30.8

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~  200 (299)
                      |++++|+|+|.|++ |.+++..|+..|. ++++++..
T Consensus        29 l~~~~VlVvG~Gg~-G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           29 LKDSRVLIVGLGGL-GCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HHHCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCeEEEEeeCHH-HHHHHHHHHHcCCCeEEEEcCC
Confidence            56789999999985 9999999999996 89998754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.02  E-value=0.0044  Score=57.32  Aligned_cols=71  Identities=21%  Similarity=0.265  Sum_probs=53.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC-------CeEEEEcCCCC---------------------------------Chhhh
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD-------ATVTIVHSHTT---------------------------------DPESI  207 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g-------atVtv~~~~t~---------------------------------~l~~~  207 (299)
                      ++|.|||.|.+ |.+++..|++.|       .+|++++++..                                 ++.+.
T Consensus         9 mkI~iIG~G~m-G~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            9 KKVCIVGSGNW-GSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CeEEEECCCHH-HHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            58999998775 999999999888       78999876432                                 23345


Q ss_pred             ccCCcEEEEecCCCCc---CC--CCccCCCeEEEEee
Q 022295          208 VREADIVIAAAGQAMM---IK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       208 ~~~ADIVIsa~g~p~~---i~--~~~vk~gavVIDvg  239 (299)
                      +++||+||.++....+   +.  ...++++++|+++.
T Consensus        88 ~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~  124 (354)
T 1x0v_A           88 AEDADILIFVVPHQFIGKICDQLKGHLKANATGISLI  124 (354)
T ss_dssp             HTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECC
T ss_pred             HcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEEC
Confidence            6789999999975331   11  24567899999985

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.01  E-value=0.0055  Score=53.14  Aligned_cols=38  Identities=26%  Similarity=0.423  Sum_probs=34.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   40 (248)
T 2pnf_A            3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTS   40 (248)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999999999999999999999999998764

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.00  E-value=0.011  Score=55.04  Aligned_cols=53  Identities=23%  Similarity=0.335  Sum_probs=43.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      ++|+|||+|. +|.+++..|+..|. +|.+++..                          |.++ +.+++||+||.++|.
T Consensus         5 ~kI~VIGaG~-vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            5 AKIVLVGSGM-IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF   82 (322)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            5899999855 69999999999986 88888643                          1345 678999999999987


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        83 p~   84 (322)
T 1t2d_A           83 TK   84 (322)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.00  E-value=0.0059  Score=59.84  Aligned_cols=71  Identities=10%  Similarity=0.166  Sum_probs=54.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-----------------------------------CChhhhccCCc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-----------------------------------TDPESIVREAD  212 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-----------------------------------~~l~~~~~~AD  212 (299)
                      ++|.|||.|.+ |.++|..|++.|..|++++++.                                   .++ +.+++||
T Consensus        55 ~kVaVIGaG~M-G~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aD  132 (460)
T 3k6j_A           55 NSVAIIGGGTM-GKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-HKLSNCD  132 (460)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-GGCTTCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-HHHccCC
Confidence            78999998775 9999999999999999997642                                   233 3588999


Q ss_pred             EEEEecCCC-C----cCC--CCccCCCeEEEEeec
Q 022295          213 IVIAAAGQA-M----MIK--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       213 IVIsa~g~p-~----~i~--~~~vk~gavVIDvg~  240 (299)
                      +||.|++.. .    ++.  .+.+++++++++...
T Consensus       133 lVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTS  167 (460)
T 3k6j_A          133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTS  167 (460)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCC
Confidence            999999742 2    121  245688999987654

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.99  E-value=0.013  Score=51.89  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ++.||+++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   55 (253)
T 2nm0_A           18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG   55 (253)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999999999999999999999999999987653

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.99  E-value=0.011  Score=51.96  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   40 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQA   40 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            5789999999999999999999999999999988764

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.99  E-value=0.0053  Score=54.52  Aligned_cols=55  Identities=16%  Similarity=0.189  Sum_probs=45.8

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------------ChhhhccCCcEEEEecCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------------DPESIVREADIVIAAAGQ  220 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------------~l~~~~~~ADIVIsa~g~  220 (299)
                      ++|+|+|.|+++-+|+.++..|+++|++|+++.+...                  .+.+.+++.|+||...|.
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~   74 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGI   74 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence            5789999999999999999999999999998876531                  134667889999988875

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.99  E-value=0.0032  Score=56.86  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=34.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+||.++|-|+|.-+|+.+|..|+++||.|.+++++
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~   40 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELL   40 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            6899999999998888999999999999999999875

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.99  E-value=0.0069  Score=54.14  Aligned_cols=55  Identities=24%  Similarity=0.375  Sum_probs=43.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------C------------------------ChhhhccCCcEEE
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------T------------------------DPESIVREADIVI  215 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------~------------------------~l~~~~~~ADIVI  215 (299)
                      +++|+|.|+++.+|+.++..|+++|++|+++.+..       .                        .+.+.++.+|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            57899999988899999999999999998887653       0                        1235567789999


Q ss_pred             EecCCC
Q 022295          216 AAAGQA  221 (299)
Q Consensus       216 sa~g~p  221 (299)
                      .++|..
T Consensus        82 ~~a~~~   87 (307)
T 2gas_A           82 CAAGRL   87 (307)
T ss_dssp             ECSSSS
T ss_pred             ECCccc
Confidence            887754

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.99  E-value=0.0082  Score=56.31  Aligned_cols=77  Identities=12%  Similarity=0.062  Sum_probs=55.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC------------------CCCChhhhcc-----CCcEEEEecCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS------------------HTTDPESIVR-----EADIVIAAAGQA  221 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~------------------~t~~l~~~~~-----~ADIVIsa~g~p  221 (299)
                      -.|.+|+|+|+++.||..+++++...|++|+...+                  +..++.+.++     .+|+||-++|.+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~  242 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV  242 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCch
Confidence            57999999999777899999999999998765532                  1223333222     389999999986


Q ss_pred             CcCC--CCcc-CCCeEEEEeecc
Q 022295          222 MMIK--GSWI-KPGAAVIDVGTN  241 (299)
Q Consensus       222 ~~i~--~~~v-k~gavVIDvg~~  241 (299)
                      ..+.  -+.+ +++..++.+|..
T Consensus       243 ~~~~~~~~~l~~~~G~iv~~g~~  265 (371)
T 3gqv_A          243 ESTTFCFAAIGRAGGHYVSLNPF  265 (371)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSCC
T ss_pred             HHHHHHHHHhhcCCCEEEEEecC
Confidence            5432  2456 578888888854

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.98  E-value=0.0066  Score=51.70  Aligned_cols=52  Identities=17%  Similarity=0.216  Sum_probs=42.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------Chh----hhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------DPE----SIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~l~----~~~~~ADIVIsa~g~  220 (299)
                      +|+|.|+++.+|+.++..|+++|++|+++.++..               |+.    +.+...|+||.++|.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            6999999999999999999999999999976521               221    457789999988886

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.98  E-value=0.0053  Score=58.72  Aligned_cols=71  Identities=30%  Similarity=0.363  Sum_probs=52.6

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------------------CChhhhccCCcEEEE
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------------------TDPESIVREADIVIA  216 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------------------~~l~~~~~~ADIVIs  216 (299)
                      +|.|||.|. ||.++|..|++ |.+|++++++.                                .+..+.+++||+||.
T Consensus         2 kI~VIG~G~-vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            2 KIAVAGSGY-VGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             EEEEECCSH-HHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCCH-HHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            689999877 59999999998 99999997531                                123455778999999


Q ss_pred             ecCCCC----------cCC------CCccCCCeEEEEeeccC
Q 022295          217 AAGQAM----------MIK------GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       217 a~g~p~----------~i~------~~~vk~gavVIDvg~~~  242 (299)
                      +++.|.          .+.      .. +++|++||+...++
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~  120 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIP  120 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCC
T ss_pred             ecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCC
Confidence            999872          111      12 67899999855544

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.97  E-value=0.0096  Score=55.60  Aligned_cols=96  Identities=25%  Similarity=0.230  Sum_probs=66.5

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPES  206 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~  206 (299)
                      .+||....++..|.+..---.|++|+|+|. +.+|..+++++...|++|+++.+..                   .++.+
T Consensus       169 ~l~~~~~ta~~al~~~~~~~~g~~VlV~G~-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  247 (363)
T 3uog_A          169 TLPCAGLTAWFALVEKGHLRAGDRVVVQGT-GGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVE  247 (363)
T ss_dssp             TTTTHHHHHHHHHTTTTCCCTTCEEEEESS-BHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             hcccHHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHH
Confidence            356666666777744443457999999995 5579999999999999988876431                   23222


Q ss_pred             h----c--cCCcEEEEecCCCCc-CCCCccCCCeEEEEeeccC
Q 022295          207 I----V--READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       207 ~----~--~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~~  242 (299)
                      .    +  +.+|+||.++|.+.+ ---+.++++..++.+|...
T Consensus       248 ~v~~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~  290 (363)
T 3uog_A          248 RVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLE  290 (363)
T ss_dssp             HHHHHHTTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCS
T ss_pred             HHHHHhCCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecCC
Confidence            2    2  158999999994332 1235678888999998754

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.97  E-value=0.0056  Score=51.59  Aligned_cols=53  Identities=23%  Similarity=0.378  Sum_probs=41.9

Q ss_pred             Cc-EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----C------hhhhcc---CCcEEEEecCC
Q 022295          167 GK-RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----D------PESIVR---EADIVIAAAGQ  220 (299)
Q Consensus       167 gk-~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----~------l~~~~~---~ADIVIsa~g~  220 (299)
                      || +++|.|+++-+|+.++..|+ +|++|+++.++..    |      +.+.+.   ..|+||..+|.
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~   68 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGS   68 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            56 89999999999999999999 9999999877631    2      223343   37999988884

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.97  E-value=0.0025  Score=57.60  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=35.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|+||.++|-|++.-+|+.+|..|+++||+|.++.++
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~   42 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIR   42 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            47999999999999989999999999999999999765

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=95.97  E-value=0.0098  Score=53.20  Aligned_cols=58  Identities=14%  Similarity=0.235  Sum_probs=45.3

Q ss_pred             CCcEEEEEcC----------------CccchHHHHHHHhhCCCeEEEEcCCCC---------------C-------hhhh
Q 022295          166 KGKRAVVVGR----------------SNIVGLPVSLLLLKADATVTIVHSHTT---------------D-------PESI  207 (299)
Q Consensus       166 ~gk~vvViG~----------------s~~vG~pla~lL~~~gatVtv~~~~t~---------------~-------l~~~  207 (299)
                      +||+|+|-|.                ||-.|..+|..|+.+||.|+++++.+.               .       +.+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~   81 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQER   81 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHHh
Confidence            5899999998                676799999999999999999987532               0       1134


Q ss_pred             ccCCcEEEEecCCCCc
Q 022295          208 VREADIVIAAAGQAMM  223 (299)
Q Consensus       208 ~~~ADIVIsa~g~p~~  223 (299)
                      ...+|++|.+++...+
T Consensus        82 ~~~~Dili~aAAvsD~   97 (232)
T 2gk4_A           82 VQDYQVLIHSMAVSDY   97 (232)
T ss_dssp             GGGCSEEEECSBCCSE
T ss_pred             cCCCCEEEEcCccccc
Confidence            5689999988886543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.97  E-value=0.0059  Score=57.11  Aligned_cols=95  Identities=21%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPESI  207 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~~  207 (299)
                      +||.+..++..|.+.+---.|++|+|+|+++.+|..+++++...|++|+.+.+..                   .++.+.
T Consensus       144 l~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~  223 (362)
T 2c0c_A          144 LLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTV  223 (362)
T ss_dssp             TTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHH
T ss_pred             ccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHH
Confidence            3444455556665544334799999999766689999999999999988876431                   222222


Q ss_pred             c-----cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          208 V-----READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       208 ~-----~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                      +     ..+|+||.++|.+.+- --+.++++..++.+|..
T Consensus       224 ~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          224 LKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             HHHHCTTCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCG
T ss_pred             HHHhcCCCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCC
Confidence            2     2479999888863221 12456777788888864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.96  E-value=0.0094  Score=53.31  Aligned_cols=57  Identities=14%  Similarity=0.232  Sum_probs=43.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----C---hh------------hhccCCcEEEEecCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----D---PE------------SIVREADIVIAAAGQA  221 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----~---l~------------~~~~~ADIVIsa~g~p  221 (299)
                      +.+++|+|.|+++.+|+.++..|+++|++|+++.+...    .   +.            .-+.+.|+||.+++..
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~d~vi~~a~~~   80 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLSDVRLVYHLASHK   80 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHTTEEEEEECCCCC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccccCCEEEECCccC
Confidence            46799999999999999999999999999999976543    1   11            0122689999887754

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.95  E-value=0.011  Score=52.71  Aligned_cols=57  Identities=18%  Similarity=0.311  Sum_probs=45.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------C------hhhhcc-------CCcEEEEecCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------D------PESIVR-------EADIVIAAAGQ  220 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------~------l~~~~~-------~ADIVIsa~g~  220 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++..          |      +.+.+.       ..|+||..+|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~   84 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGI   84 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            478999999999999999999999999999999876521          1      112222       68999988884

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.95  E-value=0.0096  Score=58.44  Aligned_cols=122  Identities=11%  Similarity=0.110  Sum_probs=71.0

Q ss_pred             CCcEEEEEcCCccchHH-HHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccC-CCeEEEEeeccCC
Q 022295          166 KGKRAVVVGRSNIVGLP-VSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIK-PGAAVIDVGTNAV  243 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~p-la~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk-~gavVIDvg~~~~  243 (299)
                      ..|++.|||-|++ |+. +|.+|.++|+.|++++.+.....+.+++..+-|. .|.    .++.+. ...+|+--|+++.
T Consensus        21 ~~~~v~viGiG~s-G~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~-~g~----~~~~~~~~d~vV~Spgi~~~   94 (494)
T 4hv4_A           21 RVRHIHFVGIGGA-GMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIY-FHH----RPENVLDASVVVVSTAISAD   94 (494)
T ss_dssp             -CCEEEEETTTST-THHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEE-SSC----CGGGGTTCSEEEECTTSCTT
T ss_pred             cCCEEEEEEEcHh-hHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEE-CCC----CHHHcCCCCEEEECCCCCCC
Confidence            4689999999997 996 8999999999999998764433333443333222 121    111221 2344444444432


Q ss_pred             CCC---ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          244 DDS---TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       244 ~~~---~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      ...   -...|-.+.+++++-...-+...+--|-|--|.=||..|+.++++.+
T Consensus        95 ~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~  147 (494)
T 4hv4_A           95 NPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEA  147 (494)
T ss_dssp             CHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhc
Confidence            100   00012257777775331111111223668899999999999988764

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.94  E-value=0.015  Score=53.99  Aligned_cols=58  Identities=24%  Similarity=0.280  Sum_probs=46.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCC-----------------C------hhhhccCCcEEEEecC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTT-----------------D------PESIVREADIVIAAAG  219 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~-----------------~------l~~~~~~ADIVIsa~g  219 (299)
                      .+++++|+|.|+++.+|+.++..|+++| ++|+++.+...                 |      +.+.++.+|+||..+|
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            4688999999999999999999999999 99999875421                 1      2245668899998877


Q ss_pred             CC
Q 022295          220 QA  221 (299)
Q Consensus       220 ~p  221 (299)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.94  E-value=0.0038  Score=58.27  Aligned_cols=95  Identities=20%  Similarity=0.163  Sum_probs=64.3

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPES  206 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~  206 (299)
                      .+||....++..|.+..---.|++|+|.|+++.+|..+++++...|++|+.+.++.                   .++.+
T Consensus       150 ~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~  229 (351)
T 1yb5_A          150 AIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYID  229 (351)
T ss_dssp             TTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHH
T ss_pred             hhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHH
Confidence            34555555666665433334699999999967789999999999999988876431                   12211


Q ss_pred             ----hcc--CCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295          207 ----IVR--EADIVIAAAGQAMMI-KGSWIKPGAAVIDVGT  240 (299)
Q Consensus       207 ----~~~--~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~  240 (299)
                          .+.  ..|+||.++|.+.+- .-+.++++-.++.+|.
T Consensus       230 ~~~~~~~~~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          230 KIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             HHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCC
T ss_pred             HHHHHcCCCCcEEEEECCChHHHHHHHHhccCCCEEEEEec
Confidence                121  589999998865331 2255788778888884

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.91  E-value=0.012  Score=52.01  Aligned_cols=38  Identities=18%  Similarity=0.314  Sum_probs=34.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   40 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46899999999999999999999999999999987653

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.89  E-value=0.0061  Score=53.07  Aligned_cols=38  Identities=21%  Similarity=0.423  Sum_probs=34.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   44 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC
Confidence            35789999999999999999999999999999998764

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=95.89  E-value=0.0063  Score=54.45  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=34.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   60 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTR   60 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36899999999999989999999999999999998765

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=95.89  E-value=0.0063  Score=53.69  Aligned_cols=38  Identities=21%  Similarity=0.324  Sum_probs=34.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRK   47 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999998765

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.89  E-value=0.013  Score=53.34  Aligned_cols=57  Identities=19%  Similarity=0.317  Sum_probs=43.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------C------hhhhccC--CcEEEEec
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------D------PESIVRE--ADIVIAAA  218 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------~------l~~~~~~--ADIVIsa~  218 (299)
                      .+++++|+|.|+++.+|+.++..|+++|++|+++.+...                 |      +.+.++.  .|+||..+
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A   97 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTA   97 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECc
Confidence            357899999999999999999999999999999876421                 1      2244555  89999877


Q ss_pred             CC
Q 022295          219 GQ  220 (299)
Q Consensus       219 g~  220 (299)
                      |.
T Consensus        98 ~~   99 (333)
T 2q1w_A           98 AS   99 (333)
T ss_dssp             CC
T ss_pred             ee
Confidence            74

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.89  E-value=0.01  Score=51.62  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   37 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   37 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCc
Confidence            3689999999999999999999999999999987653

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=95.89  E-value=0.0077  Score=54.08  Aligned_cols=37  Identities=32%  Similarity=0.401  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~   62 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARD   62 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998764

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=95.88  E-value=0.05  Score=51.73  Aligned_cols=160  Identities=15%  Similarity=0.133  Sum_probs=104.9

Q ss_pred             HHHHHHHHcCCceeeec-----CCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCccc
Q 022295           59 MKRKACAEVGIKSFDID-----LPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLN  133 (299)
Q Consensus        59 ~k~k~~~~~Gi~~~~~~-----l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n  133 (299)
                      +=..++.++|.++.++.     +...-|-.|-...+.++     +|+|.+--|-.      .....+...-+   +-.+|
T Consensus        88 SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~-----~D~IviR~~~~------~~~~~lA~~s~---vPVIN  153 (365)
T 4amu_A           88 AFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRF-----YDGIEFRGFAQ------SDVDALVKYSG---VPVWN  153 (365)
T ss_dssp             HHHHHHHHHTCEEEEECHHHHCCSSSSCHHHHHHHHHHH-----CSEEEEECSCH------HHHHHHHHHHC---SCEEE
T ss_pred             HHHHHHHhCCCEEEEcCCccccCCCCcCHHHHHHHHHhh-----CcEEEEecCCh------hHHHHHHHhCC---CCEEe
Confidence            45788999999998763     22222233444444444     67998876632      12222221112   34567


Q ss_pred             ccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-----------
Q 022295          134 IGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-----------  200 (299)
Q Consensus       134 ~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-----------  200 (299)
                      .|       .+.+.||=+.+ ++.+.++.| .++|++|+++|-+ ..|.+.++.+|...|++|++|.-.           
T Consensus       154 a~-------~~~~HPtQaLaDl~Ti~E~~G-~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~  225 (365)
T 4amu_A          154 GL-------TDDEHPTQIIADFMTMKEKFG-NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVL  225 (365)
T ss_dssp             EE-------CSSCCHHHHHHHHHHHHHHHS-SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHH
T ss_pred             CC-------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHH
Confidence            53       23568998888 556666665 5999999999987 567999999999999999998532           


Q ss_pred             ----------------CCChhhhccCCcEEEEec----CCC------------Cc-CCCCcc---CCCeEEEEeec
Q 022295          201 ----------------TTDPESIVREADIVIAAA----GQA------------MM-IKGSWI---KPGAAVIDVGT  240 (299)
Q Consensus       201 ----------------t~~l~~~~~~ADIVIsa~----g~p------------~~-i~~~~v---k~gavVIDvg~  240 (299)
                                      +.++.+.++.||+|.+-+    |.+            .+ |+.+.+   +|+++++=.+.
T Consensus       226 ~~~~~~~~~~g~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP  301 (365)
T 4amu_A          226 AKCIELFKRNGGSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLP  301 (365)
T ss_dssp             HHHHHHHHHHSCEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSC
T ss_pred             HHHHHHHHHcCCEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCC
Confidence                            235668899999999742    421            12 566654   57888887774

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=95.88  E-value=0.0078  Score=53.43  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998765

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.88  E-value=0.0087  Score=55.15  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPESI  207 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~~  207 (299)
                      +||.....+..|+..++ -.|.+|+|+|+|+ ||..+++++...|++|+.+.+.                   ..++.+.
T Consensus       148 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~  225 (340)
T 3s2e_A          148 ILCAGVTVYKGLKVTDT-RPGQWVVISGIGG-LGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAW  225 (340)
T ss_dssp             GGTHHHHHHHHHHTTTC-CTTSEEEEECCST-THHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHH
T ss_pred             ccchhHHHHHHHHHcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHH
Confidence            56666666777765433 4789999999866 6999999999999998887543                   1233333


Q ss_pred             cc----CCcEEEEecCCCCcCC--CCccCCCeEEEEeeccC
Q 022295          208 VR----EADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       208 ~~----~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~~  242 (299)
                      ++    .+|+||.++|.+..+.  -+.++++..++.+|...
T Consensus       226 ~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  266 (340)
T 3s2e_A          226 LQKEIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPP  266 (340)
T ss_dssp             HHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCS
T ss_pred             HHHhCCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCC
Confidence            32    5788998888665432  25578888888888653

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.87  E-value=0.0089  Score=53.22  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=35.3

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (271)
T 4iin_A           24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS   62 (271)
T ss_dssp             CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457899999999999889999999999999999988764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.87  E-value=0.018  Score=53.31  Aligned_cols=120  Identities=16%  Similarity=0.108  Sum_probs=71.8

Q ss_pred             CcEEEEEcCCccchHH-HHHHHhhCCCeEEEEcCCCC-ChhhhccCCcEEEEecCCCCcCCCCccC---CCeEEEEeecc
Q 022295          167 GKRAVVVGRSNIVGLP-VSLLLLKADATVTIVHSHTT-DPESIVREADIVIAAAGQAMMIKGSWIK---PGAAVIDVGTN  241 (299)
Q Consensus       167 gk~vvViG~s~~vG~p-la~lL~~~gatVtv~~~~t~-~l~~~~~~ADIVIsa~g~p~~i~~~~vk---~gavVIDvg~~  241 (299)
                      .|++.|||.|++ |+. +|.+|.++|+.|++++.+.. ...+.+++..+-|. .|.    .++.+.   ...+|+--|++
T Consensus         4 ~~~i~~iGiGg~-Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~-~g~----~~~~l~~~~~d~vV~Spgi~   77 (326)
T 3eag_A            4 MKHIHIIGIGGT-FMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVY-EGF----DAAQLDEFKADVYVIGNVAK   77 (326)
T ss_dssp             CCEEEEESCCSH-HHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEE-ESC----CGGGGGSCCCSEEEECTTCC
T ss_pred             CcEEEEEEECHH-HHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEE-CCC----CHHHcCCCCCCEEEECCCcC
Confidence            489999999997 995 99999999999999997643 23333443333332 121    112221   23455555554


Q ss_pred             CCCCC---ccCCCceeeccCCchh--hhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          242 AVDDS---TKKSGYRLVGDVDFHE--ACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       242 ~~~~~---~~~~g~kl~GDvdf~~--~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      +....   -...|-.+.+++++-.  ..+ ...+--|-|--|.=|+..|+.++++.+
T Consensus        78 ~~~p~~~~a~~~gi~v~~~~e~~~~~~~~-~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           78 RGMDVVEAILNLGLPYISGPQWLSENVLH-HHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             TTCHHHHHHHHTTCCEEEHHHHHHHHTGG-GSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHcCCcEEeHHHHHHHHHhc-CCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            32100   0001235788877532  111 112223668899999999999998764

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=95.86  E-value=0.011  Score=52.41  Aligned_cols=56  Identities=14%  Similarity=0.251  Sum_probs=45.6

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC------hhhhcc--CCcEEEEecCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD------PESIVR--EADIVIAAAGQA  221 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~------l~~~~~--~ADIVIsa~g~p  221 (299)
                      .-++|+|.|+++.+|+.++..|+++|++|+++.+..-|      +.+.++  ..|+||..+|..
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   74 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT   74 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCccC
Confidence            45899999999999999999999999999999876433      334566  689999888753

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=95.86  E-value=0.008  Score=53.12  Aligned_cols=37  Identities=22%  Similarity=0.351  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   49 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   49 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5789999999999999999999999999999998654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=95.86  E-value=0.0089  Score=53.34  Aligned_cols=38  Identities=26%  Similarity=0.301  Sum_probs=34.7

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   54 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN   54 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999999999999999999999998765

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=95.85  E-value=0.0067  Score=53.45  Aligned_cols=38  Identities=29%  Similarity=0.384  Sum_probs=34.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   42 (248)
T 3op4_A            5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS   42 (248)
T ss_dssp             TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999998765

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.85  E-value=0.0068  Score=55.63  Aligned_cols=57  Identities=25%  Similarity=0.358  Sum_probs=45.0

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------CChhhhcc--CCcEEE
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------TDPESIVR--EADIVI  215 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------~~l~~~~~--~ADIVI  215 (299)
                      ..++|+|.|++|.+|+.++..|+++|.+|+++.+..                            ..+.+.++  .+|+||
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence            467899999999999999999999999999887754                            01335667  899999


Q ss_pred             EecCCCC
Q 022295          216 AAAGQAM  222 (299)
Q Consensus       216 sa~g~p~  222 (299)
                      .++|..+
T Consensus        89 ~~a~~~n   95 (346)
T 3i6i_A           89 STVGGES   95 (346)
T ss_dssp             ECCCGGG
T ss_pred             ECCchhh
Confidence            8887643

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=95.85  E-value=0.0082  Score=53.79  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   55 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   55 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998764

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.83  E-value=0.013  Score=57.48  Aligned_cols=55  Identities=16%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------ChhhhccCCcEEEEecCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------DPESIVREADIVIAAAGQA  221 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------~l~~~~~~ADIVIsa~g~p  221 (299)
                      +++|+|.|++|.+|+.++..|+++|.+|+++.+...           .+.+.+..+|+||..+|..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCCc
Confidence            789999999999999999999999999999976532           2346678899999887753

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.83  E-value=0.0079  Score=53.64  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~   65 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCART   65 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            3789999999999999999999999999999998764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.82  E-value=0.0045  Score=57.44  Aligned_cols=94  Identities=18%  Similarity=0.180  Sum_probs=63.7

Q ss_pred             ccCCHHHHHHHHHh-hCCCc-----CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------------C
Q 022295          147 LPCTPKGCLELLKR-SGVTI-----KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------T  202 (299)
Q Consensus       147 ~PcT~~av~~ll~~-~~~~l-----~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------~  202 (299)
                      +||+....+..|.+ .++..     .|++|+|+|+++.+|..+++++...||+|+.+.++.                  .
T Consensus       125 ~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~  204 (346)
T 3fbg_A          125 LPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKE  204 (346)
T ss_dssp             SHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTS
T ss_pred             cchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCc
Confidence            45555455555543 33332     799999997667789999999999999999887642                  1


Q ss_pred             Chhhhc-----cCCcEEEEecCCCCcCC--CCccCCCeEEEEeec
Q 022295          203 DPESIV-----READIVIAAAGQAMMIK--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       203 ~l~~~~-----~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~  240 (299)
                      ++.+.+     +..|+||.++|.+..+.  -+.++++..++.+|.
T Consensus       205 ~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~  249 (346)
T 3fbg_A          205 SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVA  249 (346)
T ss_dssp             CHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSC
T ss_pred             cHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECC
Confidence            222222     24799999998765432  256788777777764

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=95.81  E-value=0.0069  Score=52.93  Aligned_cols=39  Identities=28%  Similarity=0.427  Sum_probs=35.4

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..++++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~   47 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSN   47 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            356899999999999999999999999999999998765

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.81  E-value=0.011  Score=54.09  Aligned_cols=57  Identities=23%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------------C------hhhhccCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------------D------PESIVREA  211 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------------~------l~~~~~~A  211 (299)
                      ++++++|+|.|+++.+|+.++..|+++|++|+++.+...                          |      +.+.++..
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            367899999999999999999999999999998865321                          1      23456788


Q ss_pred             cEEEEecCC
Q 022295          212 DIVIAAAGQ  220 (299)
Q Consensus       212 DIVIsa~g~  220 (299)
                      |+||.++|.
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999988774

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.80  E-value=0.012  Score=51.04  Aligned_cols=34  Identities=29%  Similarity=0.426  Sum_probs=31.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~  197 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~   35 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLN   35 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            3689999999999999999999999999999988

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.79  E-value=0.011  Score=48.01  Aligned_cols=55  Identities=15%  Similarity=0.256  Sum_probs=42.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----C---------------------hhhh-ccCCcEEEEecC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----D---------------------PESI-VREADIVIAAAG  219 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----~---------------------l~~~-~~~ADIVIsa~g  219 (299)
                      ..++++|+|.|. +|+.++..|.+.|..|+++.+...    .                     +.+. +.+||.||.+++
T Consensus         2 ~~~~vlI~G~G~-vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (153)
T 1id1_A            2 RKDHFIVCGHSI-LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CCSCEEEECCSH-HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence            357899999866 599999999999999999976421    0                     1232 778899999888


Q ss_pred             CC
Q 022295          220 QA  221 (299)
Q Consensus       220 ~p  221 (299)
                      ..
T Consensus        81 ~d   82 (153)
T 1id1_A           81 ND   82 (153)
T ss_dssp             CH
T ss_pred             Ch
Confidence            54

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.77  E-value=0.013  Score=53.94  Aligned_cols=54  Identities=19%  Similarity=0.305  Sum_probs=43.1

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC--------------------------CChhhhccCCcEEEEecC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT--------------------------TDPESIVREADIVIAAAG  219 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t--------------------------~~l~~~~~~ADIVIsa~g  219 (299)
                      .++|.|||+|. +|.+++..|+..|. +|+++++..                          .++ +.+++||+||.++|
T Consensus         4 ~~kI~VIGaG~-~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQ-IGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence            46899999865 59999999999887 899886542                          233 56789999999998


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      .|.
T Consensus        82 ~p~   84 (317)
T 2ewd_A           82 IPG   84 (317)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.77  E-value=0.006  Score=59.76  Aligned_cols=71  Identities=15%  Similarity=0.233  Sum_probs=53.6

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------CChhhhcc---CCcEEEEecCCCC-
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------TDPESIVR---EADIVIAAAGQAM-  222 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------~~l~~~~~---~ADIVIsa~g~p~-  222 (299)
                      +|.|||.|.+ |.+++..|++.|.+|++++++.                      .++.+.+.   ++|+||.+++.+. 
T Consensus         3 kIgVIG~G~m-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            3 DVGVVGLGVM-GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             EEEEEChHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            6899998775 9999999999999999998641                      23445554   4999999998753 


Q ss_pred             c---CC--CCccCCCeEEEEeec
Q 022295          223 M---IK--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       223 ~---i~--~~~vk~gavVIDvg~  240 (299)
                      +   +.  ...+++|.+|||++.
T Consensus        82 v~~vl~~l~~~l~~g~iIId~sn  104 (478)
T 1pgj_A           82 TDSTIEQLKKVFEKGDILVDTGN  104 (478)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCC
T ss_pred             HHHHHHHHHhhCCCCCEEEECCC
Confidence            1   21  134678999999873

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=95.77  E-value=0.02  Score=51.54  Aligned_cols=38  Identities=24%  Similarity=0.426  Sum_probs=34.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   43 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSA   43 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            57899999999999899999999999999999987654

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.75  E-value=0.013  Score=52.73  Aligned_cols=56  Identities=16%  Similarity=0.242  Sum_probs=44.9

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-C------Chhhhcc--CCcEEEEecCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-T------DPESIVR--EADIVIAAAGQA  221 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-~------~l~~~~~--~ADIVIsa~g~p  221 (299)
                      .+++|+|.|+++.+|+.++..|+++|++|+++.++. -      .+.+.++  ..|+||..+|..
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~   66 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKV   66 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcCeec
Confidence            468999999999999999999999999988876542 1      2345566  899999887754

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=95.74  E-value=0.0067  Score=53.71  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=34.8

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLK   45 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999999999999999999999998765

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.74  E-value=0.015  Score=53.53  Aligned_cols=75  Identities=20%  Similarity=0.337  Sum_probs=51.9

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------------------CChhhhccCCcEE
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------------------TDPESIVREADIV  214 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------------------~~l~~~~~~ADIV  214 (299)
                      +.+...++|.|||.|.+ |..++..|++.|..|+++ ++.                           .+. +.+..+|+|
T Consensus        14 ~~~~~~~kI~IiGaGa~-G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   90 (318)
T 3hwr_A           14 NLYFQGMKVAIMGAGAV-GCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLV   90 (318)
T ss_dssp             ------CEEEEESCSHH-HHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEE
T ss_pred             hhhccCCcEEEECcCHH-HHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEE
Confidence            34456789999998775 999999999999999998 432                           122 335789999


Q ss_pred             EEecCCCCc---CC--CCccCCCeEEEEee
Q 022295          215 IAAAGQAMM---IK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       215 Isa~g~p~~---i~--~~~vk~gavVIDvg  239 (299)
                      |.++....+   +.  ...++++++|+.+-
T Consensus        91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~~  120 (318)
T 3hwr_A           91 LFCVKSTDTQSAALAMKPALAKSALVLSLQ  120 (318)
T ss_dssp             EECCCGGGHHHHHHHHTTTSCTTCEEEEEC
T ss_pred             EEEcccccHHHHHHHHHHhcCCCCEEEEeC
Confidence            999986542   11  24567788888763

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.73  E-value=0.0042  Score=57.63  Aligned_cols=93  Identities=13%  Similarity=0.072  Sum_probs=63.4

Q ss_pred             ccCCHHHHHHHHHhhCCCcCC-cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKG-KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPES  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~g-k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~  206 (299)
                      +||.+..++.+++..+  ..| +.++|.|.++.+|..+++++...||+|+.+.++.                   .++.+
T Consensus       146 l~~~~~ta~~~~~~~~--~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~  223 (349)
T 3pi7_A          146 MIVNPLTAIAMFDIVK--QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEA  223 (349)
T ss_dssp             SSHHHHHHHHHHHHHH--HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHH
T ss_pred             ccccHHHHHHHHHHHh--hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHH
Confidence            3555555556666555  445 7777776677789999999999999988876432                   22222


Q ss_pred             hc------cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          207 IV------READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       207 ~~------~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                      .+      +..|+||.++|.+.+- --+.++++..++.+|..
T Consensus       224 ~v~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  265 (349)
T 3pi7_A          224 TLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRL  265 (349)
T ss_dssp             HHHHHHHHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCS
T ss_pred             HHHHHhcCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEecc
Confidence            22      3589999999976541 12467888889999854

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.73  E-value=0.011  Score=53.11  Aligned_cols=54  Identities=13%  Similarity=0.271  Sum_probs=40.2

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccC--CcEEEEecCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVRE--ADIVIAAAGQ  220 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~--ADIVIsa~g~  220 (299)
                      ||+|+|.|+++.+|+.++..|+++|++|+++.+..             ..+.+.++.  .|+||..+|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence            68999999999999999999999999999887432             123345553  8999988774

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.72  E-value=0.017  Score=53.89  Aligned_cols=55  Identities=20%  Similarity=0.298  Sum_probs=43.9

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEec
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      +..+|.|||+|. +|.+++..|+..|. +|++++..                          |.+. +.+++||+||.++
T Consensus         6 ~~~kI~viGaG~-vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            6 ARNKIALIGSGM-IGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             cCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            457899999865 69999999998887 88888643                          1233 7899999999999


Q ss_pred             CCCC
Q 022295          219 GQAM  222 (299)
Q Consensus       219 g~p~  222 (299)
                      |.|.
T Consensus        84 g~p~   87 (324)
T 3gvi_A           84 GVPR   87 (324)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            9653

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.72  E-value=0.015  Score=52.13  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=34.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   64 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT   64 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH
Confidence            46899999999999989999999999999999988743

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.71  E-value=0.013  Score=53.01  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+|+|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   36 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRR   36 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            358999999999999999999999999999998765

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.71  E-value=0.0059  Score=55.94  Aligned_cols=93  Identities=11%  Similarity=0.046  Sum_probs=62.6

Q ss_pred             cCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhhh-
Q 022295          148 PCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPESI-  207 (299)
Q Consensus       148 PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~~-  207 (299)
                      ||.....+..|.+..---.|++|+|.|+++.+|..+++++...|++|+.+.++.                   .+..+. 
T Consensus       122 ~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  201 (327)
T 1qor_A          122 FLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERL  201 (327)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             hhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHH
Confidence            343344555665433334699999999766679999999999999998886531                   122111 


Q ss_pred             ---c--cCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295          208 ---V--READIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       208 ---~--~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~  241 (299)
                         +  ...|++|.++| +..+  --+.++++..++.+|..
T Consensus       202 ~~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g~~  241 (327)
T 1qor_A          202 KEITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFGNS  241 (327)
T ss_dssp             HHHTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECCCT
T ss_pred             HHHhCCCCceEEEECCc-hHHHHHHHHHhcCCCEEEEEecC
Confidence               1  24799999999 4332  22567888888888864

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.71  E-value=0.0069  Score=55.81  Aligned_cols=95  Identities=16%  Similarity=0.062  Sum_probs=62.7

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------Chh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPE  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~  205 (299)
                      +||....++..|.+..-.-.|++|+|+|+++.+|..+++++...|++|+++.++..                     ++.
T Consensus       136 l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~  215 (345)
T 2j3h_A          136 LGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLT  215 (345)
T ss_dssp             TSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSH
T ss_pred             ccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHH
Confidence            45444455566644333347999999998667899999999999999888764311                     222


Q ss_pred             hhc-----cCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          206 SIV-----READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 ~~~-----~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                      +.+     ...|+||.++|.+.+ -.-+.++++..++.+|..
T Consensus       216 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~G~~  257 (345)
T 2j3h_A          216 AALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMI  257 (345)
T ss_dssp             HHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCG
T ss_pred             HHHHHHhCCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEccc
Confidence            222     247888888886422 123567787788888864

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.71  E-value=0.021  Score=53.17  Aligned_cols=57  Identities=12%  Similarity=0.119  Sum_probs=46.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------C------hhhhccCCcEEEEecCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------D------PESIVREADIVIAAAGQ  220 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~------l~~~~~~ADIVIsa~g~  220 (299)
                      +..+++|+|.|+++.+|+.++..|+++|++|+++.+...               |      +.+.++..|+||..+|.
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            346789999999999999999999999999998876531               1      33567789999988774

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.70  E-value=0.011  Score=53.22  Aligned_cols=55  Identities=18%  Similarity=0.194  Sum_probs=44.0

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-C-----------------------------ChhhhccCCcEEEE
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-T-----------------------------DPESIVREADIVIA  216 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-~-----------------------------~l~~~~~~ADIVIs  216 (299)
                      .++|+|.|+++.+|+.++..|+++|++|+++.++. .                             .+.+.++.+|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            47899999988899999999999999999887653 0                             13356778899998


Q ss_pred             ecCCC
Q 022295          217 AAGQA  221 (299)
Q Consensus       217 a~g~p  221 (299)
                      ++|..
T Consensus        84 ~a~~~   88 (321)
T 3c1o_A           84 ALPFP   88 (321)
T ss_dssp             CCCGG
T ss_pred             CCCcc
Confidence            87754

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=95.69  E-value=0.0092  Score=52.55  Aligned_cols=38  Identities=16%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   47 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   47 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999999999999999999999998764

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.67  E-value=0.0081  Score=52.99  Aligned_cols=37  Identities=32%  Similarity=0.428  Sum_probs=30.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   42 (257)
T 3tl3_A            6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR   42 (257)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             eecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCc
Confidence            5789999999999889999999999999999998764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.67  E-value=0.017  Score=51.40  Aligned_cols=36  Identities=17%  Similarity=0.129  Sum_probs=33.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   61 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRS   61 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            689999999999989999999999999999999765

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=95.66  E-value=0.0099  Score=58.84  Aligned_cols=73  Identities=25%  Similarity=0.197  Sum_probs=55.5

Q ss_pred             cCC-cEEEEEcCCccchHHHHHHHhhC------CCeEEEEcCCC-------------------CChhhhccCCcEEEEec
Q 022295          165 IKG-KRAVVVGRSNIVGLPVSLLLLKA------DATVTIVHSHT-------------------TDPESIVREADIVIAAA  218 (299)
Q Consensus       165 l~g-k~vvViG~s~~vG~pla~lL~~~------gatVtv~~~~t-------------------~~l~~~~~~ADIVIsa~  218 (299)
                      |+| |+|.|||.|.+ |.++|..|.+.      |..|++..++.                   .++.+.+++||+||.++
T Consensus        51 L~GiKkIgIIGlGsM-G~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaV  129 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLI  129 (525)
T ss_dssp             TTTCSEEEEECCTTH-HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECS
T ss_pred             hcCCCEEEEEeEhHH-HHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECC
Confidence            688 99999999886 99999999998      88888775431                   24567889999999999


Q ss_pred             CCC---CcCC--CCccCCCeEEEEe
Q 022295          219 GQA---MMIK--GSWIKPGAAVIDV  238 (299)
Q Consensus       219 g~p---~~i~--~~~vk~gavVIDv  238 (299)
                      +..   .++.  ...+++|++|+..
T Consensus       130 P~~~~~eVl~eI~p~LK~GaILs~A  154 (525)
T 3fr7_A          130 SDAAQADNYEKIFSHMKPNSILGLS  154 (525)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEES
T ss_pred             ChHHHHHHHHHHHHhcCCCCeEEEe
Confidence            842   2332  2346889886554

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.65  E-value=0.0067  Score=56.50  Aligned_cols=95  Identities=14%  Similarity=0.115  Sum_probs=63.7

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhh-
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPES-  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~-  206 (299)
                      +||.....+..|.+..---.|++|+|.|+++.+|..+++++...|++|+++.++.                   .+..+ 
T Consensus       143 l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  222 (354)
T 2j8z_A          143 IPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEA  222 (354)
T ss_dssp             SHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             ccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHH
Confidence            4444444555553333234689999999766789999999999999988876431                   12211 


Q ss_pred             ---hc--cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          207 ---IV--READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       207 ---~~--~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                         .+  ...|++|.++|.+.+- --+.++++..++.+|..
T Consensus       223 ~~~~~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~  263 (354)
T 2j8z_A          223 TLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLM  263 (354)
T ss_dssp             HHHHTTTSCEEEEEESSCGGGHHHHHHHEEEEEEEEECCCT
T ss_pred             HHHHhcCCCceEEEECCCchHHHHHHHhccCCCEEEEEecc
Confidence               12  2579999999976431 22557888888888864

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.65  E-value=0.0081  Score=51.83  Aligned_cols=57  Identities=21%  Similarity=0.231  Sum_probs=44.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-C------hhhh---ccCCcEEEEecCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-D------PESI---VREADIVIAAAGQ  220 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-~------l~~~---~~~ADIVIsa~g~  220 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++.. |      +++.   +..-|++|..+|.
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nAg~   69 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAGS   69 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            468999999999998999999999999999999876531 2      2222   3467999988884

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.65  E-value=0.01  Score=54.84  Aligned_cols=94  Identities=16%  Similarity=0.150  Sum_probs=62.8

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhh-
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPES-  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~-  206 (299)
                      +||.....+..|.+..---.|++|+|+|+++.+|..+++++...|++|+.+.++.                   .++.+ 
T Consensus       147 l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~  226 (343)
T 2eih_A          147 IPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKE  226 (343)
T ss_dssp             SHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHH
T ss_pred             chhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHH
Confidence            3443344555565432223689999999967789999999999999988876431                   12222 


Q ss_pred             ---hc--cCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          207 ---IV--READIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       207 ---~~--~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                         .+  ...|+||.++| +..+.  -+.++++..++.+|..
T Consensus       227 ~~~~~~~~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~g~~  267 (343)
T 2eih_A          227 VRRLTGGKGADKVVDHTG-ALYFEGVIKATANGGRIAIAGAS  267 (343)
T ss_dssp             HHHHTTTTCEEEEEESSC-SSSHHHHHHHEEEEEEEEESSCC
T ss_pred             HHHHhCCCCceEEEECCC-HHHHHHHHHhhccCCEEEEEecC
Confidence               22  25799999999 44332  2557787788888864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.64  E-value=0.0093  Score=48.04  Aligned_cols=54  Identities=19%  Similarity=0.279  Sum_probs=41.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------------C---hhh-hccCCcEEEEecCCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------------D---PES-IVREADIVIAAAGQAM  222 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------------~---l~~-~~~~ADIVIsa~g~p~  222 (299)
                      .+++|+|.|.+ |+.++..|.+.|..|+++.++..                  +   +.+ .+.+||+||.+++...
T Consensus         8 ~~viIiG~G~~-G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A            8 NHALLVGYGRV-GSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             SCEEEECCSHH-HHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHH
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChH
Confidence            47999998875 99999999999999999976521                  1   122 2578999999988653

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=95.63  E-value=0.014  Score=51.67  Aligned_cols=53  Identities=17%  Similarity=0.270  Sum_probs=43.9

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh------hhhcc--CCcEEEEecCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP------ESIVR--EADIVIAAAGQA  221 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l------~~~~~--~ADIVIsa~g~p  221 (299)
                      +|+|.|+++.+|+.++..|+++|++|+.+.+..-|+      .+.++  ..|+||..+|..
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~a~~~   67 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYT   67 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcCCCEEEECCccc
Confidence            899999999999999999999999999998765443      34555  589999887754

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.63  E-value=0.015  Score=57.11  Aligned_cols=85  Identities=28%  Similarity=0.462  Sum_probs=63.3

Q ss_pred             HHHHHHhhCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCCC---------CChhhhccCCcEEE
Q 022295          154 CLELLKRSGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSHT---------TDPESIVREADIVI  215 (299)
Q Consensus       154 v~~ll~~~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~t---------~~l~~~~~~ADIVI  215 (299)
                      +.+.|...+.+++|++|.|+|-+         +.-...++..|.++|++|.+.+-.-         .++.+.++.||.||
T Consensus       340 i~~~l~~~~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vv  419 (478)
T 3g79_A          340 TVAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIV  419 (478)
T ss_dssp             HHHHHHTTTCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEE
T ss_pred             HHHHHhhcccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEE
Confidence            34444445678999999999932         2236788999999999999986432         46678899999999


Q ss_pred             EecCCCCcC--CCCcc----C-CCeEEEEe
Q 022295          216 AAAGQAMMI--KGSWI----K-PGAAVIDV  238 (299)
Q Consensus       216 sa~g~p~~i--~~~~v----k-~gavVIDv  238 (299)
                      .+|..+.|-  +.+.+    + +..+|+|.
T Consensus       420 i~t~~~~f~~~d~~~~~~~~~~~~~~i~D~  449 (478)
T 3g79_A          420 VLAGHSAYSSLKADWAKKVSAKANPVIIDG  449 (478)
T ss_dssp             ECSCCHHHHSCCHHHHHHHHCCSSCEEEES
T ss_pred             EecCCHHHHhhhHHHHHHHhccCCCEEEEC
Confidence            999998873  44334    3 37799993

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.63  E-value=0.015  Score=52.14  Aligned_cols=38  Identities=26%  Similarity=0.375  Sum_probs=34.1

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ..+++||.++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~   63 (271)
T 3v2g_A           26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYV   63 (271)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            35789999999999988999999999999999998843

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=95.59  E-value=0.013  Score=52.24  Aligned_cols=37  Identities=24%  Similarity=0.143  Sum_probs=32.9

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +.+|+++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   39 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRT   39 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999999999899999999999999999987653

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.59  E-value=0.014  Score=54.59  Aligned_cols=57  Identities=21%  Similarity=0.351  Sum_probs=44.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-----------------------CChhhhccCCcEEEEec
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-----------------------TDPESIVREADIVIAAA  218 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-----------------------~~l~~~~~~ADIVIsa~  218 (299)
                      +-.+++|+|||+|. ||.+++..|+..+.  ++.+++...                       .+..+.+++||+||.+.
T Consensus         6 ~~~~~kV~ViGaG~-vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~a   84 (326)
T 3vku_A            6 DKDHQKVILVGDGA-VGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITA   84 (326)
T ss_dssp             -CCCCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred             cCCCCEEEEECCCH-HHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECC
Confidence            45678999999866 59999999988875  788886431                       12247799999999999


Q ss_pred             CCC
Q 022295          219 GQA  221 (299)
Q Consensus       219 g~p  221 (299)
                      |.|
T Consensus        85 g~~   87 (326)
T 3vku_A           85 GAP   87 (326)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            865

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=95.58  E-value=0.027  Score=54.24  Aligned_cols=147  Identities=18%  Similarity=0.211  Sum_probs=96.1

Q ss_pred             HHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCC---CCCCCHHHHHccCCcccc-CCCC---
Q 022295           60 KRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPL---PKHINEEKVLGEISLEKD-VDGF---  129 (299)
Q Consensus        60 k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Pl---p~~i~~~~i~~~i~p~KD-VDg~---  129 (299)
                      =..++.++|.++.++.- .+.+   -|-+.+.++-|..-  +|+|.+-.|.   ..|-...++.+...  ++ =+|+   
T Consensus        81 FE~A~~~LGg~~i~l~~-~~ssl~kGEsl~DTarvLs~y--~D~IviRh~~~~g~~~~~~~~la~~~~--~~~~~~v~~~  155 (399)
T 3q98_A           81 YASALNLLGLAQQDLDE-GKSQIAHGETVRETANMISFC--ADAIGIRDDMYLGAGNAYMREVGAALD--DGYKQGVLPQ  155 (399)
T ss_dssp             HHHHHHHHTCEEEECC--------CCTTHHHHHHHTCTT--EEEEEEEECCCCCC---HHHHHHHHHH--HHHHTTSCSS
T ss_pred             HHHHHHHcCCeEEEeCC-ccccCCCCCCHHHHHHHHHhh--CcEEEEeccccCCcchHHHHHHHHHhh--hhcccccccC
Confidence            46788999999877642 1111   24578888888764  8999999884   22222222322210  00 0221   


Q ss_pred             --CcccccccccCCCCCccccCCHHH-HHHHHHhhCC--CcCCcEEEEE-------cCCccchHHHHHHHhhCCCeEEEE
Q 022295          130 --HPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGV--TIKGKRAVVV-------GRSNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       130 --~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~--~l~gk~vvVi-------G~s~~vG~pla~lL~~~gatVtv~  197 (299)
                        -.+|.+       .+.+.||=+.+ ++.+.++.|-  .|+|++|+++       |++..|.+.++.+|...|++|++|
T Consensus       156 ~~PVINal-------~d~~HPtQaLaDl~TI~E~~G~~~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~  228 (399)
T 3q98_A          156 RPALVNLQ-------CDIDHPTQSMADLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLA  228 (399)
T ss_dssp             CCEEEEEE-------CSSCCHHHHHHHHHHHHHHHSSSGGGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEE
T ss_pred             CCcEEeCC-------CCCcCcHHHHHHHHHHHHHhCCccccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEE
Confidence              245642       24578998888 6667777774  4899999998       555567899999999999999998


Q ss_pred             cCC-------------------------CCChhhhccCCcEEEEec
Q 022295          198 HSH-------------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       198 ~~~-------------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      .-.                         +.++.+.++.||+|.+-+
T Consensus       229 ~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~aDvVytd~  274 (399)
T 3q98_A          229 HPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKS  274 (399)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEecC
Confidence            632                         245668899999999864

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=95.58  E-value=0.0092  Score=52.78  Aligned_cols=39  Identities=15%  Similarity=0.216  Sum_probs=34.2

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG   41 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999999999899999999999999999998753

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=95.57  E-value=0.0091  Score=52.33  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r   39 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYR   39 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcC
Confidence            478999999999999999999999999999999877

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.56  E-value=0.014  Score=54.81  Aligned_cols=96  Identities=18%  Similarity=0.237  Sum_probs=64.7

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC---------------------CC
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT---------------------TD  203 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t---------------------~~  203 (299)
                      .+||.....+..+.+..---.|.+|+|+|+|. ||..+++++...|+ +|+.+.+..                     .+
T Consensus       173 ~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~  251 (378)
T 3uko_A          173 LLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGT-VGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKP  251 (378)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCCEEEECCSH-HHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSC
T ss_pred             hhhhhHHHHHHHHHhhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchh
Confidence            35555554555454333334689999999855 69999999999998 788776432                     12


Q ss_pred             hhhhcc-----CCcEEEEecCCCCcCC--CCccCCC-eEEEEeeccC
Q 022295          204 PESIVR-----EADIVIAAAGQAMMIK--GSWIKPG-AAVIDVGTNA  242 (299)
Q Consensus       204 l~~~~~-----~ADIVIsa~g~p~~i~--~~~vk~g-avVIDvg~~~  242 (299)
                      +.+.++     .+|+||-++|.+..+.  -+.+++| ..++.+|...
T Consensus       252 ~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~  298 (378)
T 3uko_A          252 IQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA  298 (378)
T ss_dssp             HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred             HHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccC
Confidence            222222     3899999999875432  3568885 8888898643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.55  E-value=0.011  Score=54.73  Aligned_cols=94  Identities=21%  Similarity=0.194  Sum_probs=65.1

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-------------------CChhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-------------------TDPES  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-------------------~~l~~  206 (299)
                      +||.....+..++..++ -.|.+|+|+|+|. +|..+++++...|+ +|+.+.+..                   .++.+
T Consensus       148 ~~~~~~ta~~al~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  225 (352)
T 3fpc_A          148 IPDMMTTGFHGAELANI-KLGDTVCVIGIGP-VGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVE  225 (352)
T ss_dssp             TTTHHHHHHHHHHHTTC-CTTCCEEEECCSH-HHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHH
T ss_pred             ccchhHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHH
Confidence            44444445555655443 4689999999765 69999999999999 788886542                   12222


Q ss_pred             ----hcc--CCcEEEEecCCCCcCC--CCccCCCeEEEEeeccC
Q 022295          207 ----IVR--EADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       207 ----~~~--~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~~  242 (299)
                          .+.  .+|+||.++|.+..+.  -++++++..++.+|...
T Consensus       226 ~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~  269 (352)
T 3fpc_A          226 QILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG  269 (352)
T ss_dssp             HHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             HHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccC
Confidence                222  4899999999876442  35688988899998653

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.55  E-value=0.02  Score=52.78  Aligned_cols=53  Identities=15%  Similarity=0.313  Sum_probs=41.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      .+|+|||+|. ||.+++..|+..|. +|.+++..                          |.++ +.+++||+||.++|.
T Consensus         3 ~kI~VIGaG~-vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A            3 KKISIIGAGF-VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA   80 (309)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECCCH-HHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence            5899999855 69999999999885 88877643                          1344 678999999999987


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        81 p~   82 (309)
T 1ur5_A           81 PR   82 (309)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.55  E-value=0.02  Score=53.51  Aligned_cols=95  Identities=17%  Similarity=0.204  Sum_probs=63.1

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC---------------------CC
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT---------------------TD  203 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t---------------------~~  203 (299)
                      .+||.....+..+.+..-.-.|++|+|+|+| .+|..+++++...|+ +|+.+.+..                     .+
T Consensus       172 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG-~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~  250 (374)
T 1cdo_A          172 LLGCGVSTGFGAAVNTAKVEPGSTCAVFGLG-AVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEP  250 (374)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSC
T ss_pred             hhccHHHHHHHHHHhccCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchh
Confidence            3455444445445433333468999999975 469999999999999 787775331                     12


Q ss_pred             hhhhcc-----CCcEEEEecCCCCcCC--CCccCCC-eEEEEeecc
Q 022295          204 PESIVR-----EADIVIAAAGQAMMIK--GSWIKPG-AAVIDVGTN  241 (299)
Q Consensus       204 l~~~~~-----~ADIVIsa~g~p~~i~--~~~vk~g-avVIDvg~~  241 (299)
                      +.+.++     .+|+||.++|.+..+.  -+.++++ -.++.+|..
T Consensus       251 ~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          251 ISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             HHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             HHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCC
Confidence            322222     4799999999765432  3567888 788888864

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.54  E-value=0.0097  Score=53.20  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=32.7

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +.++.||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        11 ~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   49 (266)
T 3p19_A           11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARR   49 (266)
T ss_dssp             ----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            345789999999999989999999999999999998765

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.53  E-value=0.017  Score=52.05  Aligned_cols=54  Identities=15%  Similarity=0.243  Sum_probs=43.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------------ChhhhccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------------DPESIVREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------------~l~~~~~~ADIVIsa~g~p  221 (299)
                      ++|+|+|+++.+|+.++..|+++|++|+++.++..                         .+.+.++.+|+||.++|..
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~   90 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFP   90 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchh
Confidence            68999999888999999999999999998876542                         1235567789999887754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.53  E-value=0.014  Score=52.13  Aligned_cols=55  Identities=20%  Similarity=0.335  Sum_probs=43.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------------------------ChhhhccCCcEEEE
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------------------------DPESIVREADIVIA  216 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------------------------~l~~~~~~ADIVIs  216 (299)
                      .++|+|+|+++.+|+.++..|+++|.+|+++.|...                              .+.+.++.+|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            578999999888999999999999999988876421                              13355677899998


Q ss_pred             ecCCC
Q 022295          217 AAGQA  221 (299)
Q Consensus       217 a~g~p  221 (299)
                      ++|..
T Consensus        84 ~a~~~   88 (308)
T 1qyc_A           84 TVGSL   88 (308)
T ss_dssp             CCCGG
T ss_pred             CCcch
Confidence            87754

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=95.52  E-value=0.027  Score=54.52  Aligned_cols=157  Identities=18%  Similarity=0.232  Sum_probs=99.9

Q ss_pred             CcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCH---HHHHccCCc-
Q 022295           50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINE---EKVLGEISL-  122 (299)
Q Consensus        50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~---~~i~~~i~p-  122 (299)
                      .|+...-+ +=..++.++|.++.++.-. +.+   -|-+.+.++-|+.-  +|+|.+-.|.......   ..+.+.... 
T Consensus        69 epSTRTR~-SFE~A~~~LGg~vi~l~~~-~ss~~kGEsl~DTarvLs~y--~D~IviRh~~~~g~~~~~~~~lA~~~~~~  144 (418)
T 2yfk_A           69 DNSTRTRF-SFASACNLLGLEVQDLDEG-KSQISHGETVRETANMISFM--ADIIGIRDDMYIGKGNAYMHEVSESVQEG  144 (418)
T ss_dssp             ---CHHHH-HHHHHHHHHTCEEEEECC---------CHHHHHHHHTTTT--EEEEEEEECSSTTHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHH-HHHHHHHHCCCeEEecCCC-cccCCCCcCHHHHHHHHHHh--CcEEEEecccccCcchHHHHHHHHHHHhh
Confidence            44444443 4578899999998877532 221   24688888888875  8999998874311111   112221100 


Q ss_pred             ccc-C--CCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCC--CcCCcEEEEE-------cCCccchHHHHHHHhh
Q 022295          123 EKD-V--DGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGV--TIKGKRAVVV-------GRSNIVGLPVSLLLLK  189 (299)
Q Consensus       123 ~KD-V--Dg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~--~l~gk~vvVi-------G~s~~vG~pla~lL~~  189 (299)
                      .+. +  .....+|.|       .+...||=+.+ ++.+.++.|-  .++|++|+++       |++..|.+.++.+|..
T Consensus       145 ~~~~~~~~~~PVINa~-------~~~~HPtQaLaDl~TI~E~~G~l~~l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~  217 (418)
T 2yfk_A          145 YKDGVLEQRPTLVNLQ-------CDIDHPTQAMADALHLIHEFGGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTR  217 (418)
T ss_dssp             HHTTSCSSCCEEEEEE-------ESSCCHHHHHHHHHHHHHHTTSSGGGTTCEEEEECCCCSSSCCCSHHHHHHHHHHGG
T ss_pred             hcccccCCCCeEEeCC-------CCccChHHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHH
Confidence            010 0  112345743       23468998888 6666666663  2899999999       5666689999999999


Q ss_pred             CCCeEEEEcCC-------------------------CCChhhhccCCcEEEEe
Q 022295          190 ADATVTIVHSH-------------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       190 ~gatVtv~~~~-------------------------t~~l~~~~~~ADIVIsa  217 (299)
                      .|++|++|.-.                         +.++.+.+++||+|.+-
T Consensus       218 lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~ADVVytd  270 (418)
T 2yfk_A          218 LGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDADVVYPK  270 (418)
T ss_dssp             GTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCSEEEEC
T ss_pred             cCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEEc
Confidence            99999999643                         23566889999999985

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.52  E-value=0.018  Score=53.80  Aligned_cols=96  Identities=17%  Similarity=0.182  Sum_probs=63.5

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC---------------------CC
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT---------------------TD  203 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t---------------------~~  203 (299)
                      .+||.....+..+.+..---.|++|+|+|+|. ||..+++++...|+ +|+.+.+..                     .+
T Consensus       171 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~  249 (374)
T 2jhf_A          171 LIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGG-VGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKP  249 (374)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSC
T ss_pred             hhccHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchh
Confidence            34554444454454333334789999999755 69999999999999 787775431                     12


Q ss_pred             hhhhcc-----CCcEEEEecCCCCcCC--CCccCCC-eEEEEeeccC
Q 022295          204 PESIVR-----EADIVIAAAGQAMMIK--GSWIKPG-AAVIDVGTNA  242 (299)
Q Consensus       204 l~~~~~-----~ADIVIsa~g~p~~i~--~~~vk~g-avVIDvg~~~  242 (299)
                      +.+.++     .+|+||.++|.+..+.  -+.++++ ..++.+|...
T Consensus       250 ~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~  296 (374)
T 2jhf_A          250 IQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPP  296 (374)
T ss_dssp             HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred             HHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCC
Confidence            222222     4799999999765432  3567888 8888888643

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=95.52  E-value=0.01  Score=53.38  Aligned_cols=38  Identities=34%  Similarity=0.531  Sum_probs=34.8

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   65 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARH   65 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36899999999999989999999999999999998765

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.51  E-value=0.013  Score=50.44  Aligned_cols=54  Identities=24%  Similarity=0.273  Sum_probs=42.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------C------hhhhcc------CCcEEEEecCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------D------PESIVR------EADIVIAAAGQ  220 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------~------l~~~~~------~ADIVIsa~g~  220 (299)
                      ||+++|.|+++-+|+.++..|+++|++|.++.++..         |      +.+.+.      ..|+||..+|.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~   76 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGV   76 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcccc
Confidence            689999999999999999999999999999876532         1      223333      56999988774

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.50  E-value=0.029  Score=50.52  Aligned_cols=36  Identities=22%  Similarity=0.171  Sum_probs=32.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      .++|++|+|.|+++.+|+.++..|+++|++|+++.+
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r   43 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR   43 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            357899999999999999999999999999988754

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=95.50  E-value=0.011  Score=53.15  Aligned_cols=39  Identities=26%  Similarity=0.340  Sum_probs=35.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKP   67 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            358999999999998899999999999999999987654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.50  E-value=0.033  Score=54.18  Aligned_cols=83  Identities=20%  Similarity=0.308  Sum_probs=61.6

Q ss_pred             HHHHhhCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCc
Q 022295          156 ELLKRSGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREAD  212 (299)
Q Consensus       156 ~ll~~~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~AD  212 (299)
                      ++.+..+.+++|++|.|+|-+         +.-...++..|.++|++|.+.+-.              ..++.+.++.||
T Consensus       311 ~i~~~l~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad  390 (446)
T 4a7p_A          311 KVIKAMGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGAD  390 (446)
T ss_dssp             HHHHHTTSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBS
T ss_pred             HHHHHhcccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCC
Confidence            334455778999999999954         233678999999999999998632              235567899999


Q ss_pred             EEEEecCCCCcC--CCCccCC---CeEEEEe
Q 022295          213 IVIAAAGQAMMI--KGSWIKP---GAAVIDV  238 (299)
Q Consensus       213 IVIsa~g~p~~i--~~~~vk~---gavVIDv  238 (299)
                      .||.+|..+.|-  +.+.++.   +.+|+|.
T Consensus       391 ~vvi~t~~~~f~~~d~~~~~~~~~~~~i~D~  421 (446)
T 4a7p_A          391 ALVIVTEWDAFRALDLTRIKNSLKSPVLVDL  421 (446)
T ss_dssp             EEEECSCCTTTTSCCHHHHHTTBSSCBEECS
T ss_pred             EEEEeeCCHHhhcCCHHHHHHhcCCCEEEEC
Confidence            999999999874  3333432   4678883

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=95.49  E-value=0.0093  Score=53.56  Aligned_cols=37  Identities=27%  Similarity=0.270  Sum_probs=31.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++.||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRR   61 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999999889999999999999999998765

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=95.49  E-value=0.022  Score=51.12  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ||+|+|.|+++-+|+.++..|+++|++|+++.+
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEe
Confidence            689999999999999999999999999987755

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.49  E-value=0.0074  Score=55.03  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=34.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -.|+||.++|-|+|.-+|+.+|..|+++||+|.++.++
T Consensus        25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~   62 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRR   62 (273)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35899999999998888999999999999999999865

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.48  E-value=0.027  Score=50.34  Aligned_cols=53  Identities=21%  Similarity=0.275  Sum_probs=41.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC--------------------hhhhccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD--------------------PESIVREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~--------------------l~~~~~~ADIVIsa~g~p  221 (299)
                      ++|+|.|+++.+|+.++..|+++|++|+++.+....                    +.+.++. |+||..+|.+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~~   73 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAANP   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCCCC
Confidence            579999999999999999999999999998754221                    2233444 8999877754

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=95.48  E-value=0.014  Score=51.55  Aligned_cols=69  Identities=16%  Similarity=0.240  Sum_probs=50.5

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-C-------------CChhhhccCCcEEEEecCCCCc---CC--CCcc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-T-------------TDPESIVREADIVIAAAGQAMM---IK--GSWI  229 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-t-------------~~l~~~~~~ADIVIsa~g~p~~---i~--~~~v  229 (299)
                      +|.|||.|.+ |.+++..|.+.|.+|+++++. .             .+..+.++++|+||.+++.+..   +.  .+.+
T Consensus         2 ~I~iIG~G~m-G~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~   80 (264)
T 1i36_A            2 RVGFIGFGEV-AQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (264)
T ss_dssp             EEEEESCSHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             eEEEEechHH-HHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCcCCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhc
Confidence            6899998885 999999999999999987652 1             2344667899999999986532   11  1234


Q ss_pred             CCCeEEEEeec
Q 022295          230 KPGAAVIDVGT  240 (299)
Q Consensus       230 k~gavVIDvg~  240 (299)
                      ++  ++||++.
T Consensus        81 ~~--~vi~~s~   89 (264)
T 1i36_A           81 RG--IYVDINN   89 (264)
T ss_dssp             CS--EEEECSC
T ss_pred             Cc--EEEEccC
Confidence            54  8888853

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=95.48  E-value=0.02  Score=50.31  Aligned_cols=39  Identities=13%  Similarity=0.098  Sum_probs=33.0

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCC---CeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKAD---ATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~g---atVtv~~~~t  201 (299)
                      .++++|+++|.|+++-+|+.++..|+++|   ++|+++.++.
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~   58 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR   58 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecCh
Confidence            35789999999999999999999999999   8999987653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.46  E-value=0.057  Score=49.51  Aligned_cols=71  Identities=15%  Similarity=0.227  Sum_probs=51.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------------------CChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      .+|+|||.|.+ |..++..|.+.|..|+++.+..                           .+..+..+.+|+||.++..
T Consensus         3 mkI~IiGaGai-G~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~   81 (320)
T 3i83_A            3 LNILVIGTGAI-GSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV   81 (320)
T ss_dssp             CEEEEESCCHH-HHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence            47999998775 9999999999999999986542                           1222333489999999986


Q ss_pred             CCcCC-----CCccCCCeEEEEee
Q 022295          221 AMMIK-----GSWIKPGAAVIDVG  239 (299)
Q Consensus       221 p~~i~-----~~~vk~gavVIDvg  239 (299)
                      ..+-.     ...++++++|+.+-
T Consensus        82 ~~~~~~l~~l~~~l~~~t~Iv~~~  105 (320)
T 3i83_A           82 VEGADRVGLLRDAVAPDTGIVLIS  105 (320)
T ss_dssp             CTTCCHHHHHTTSCCTTCEEEEEC
T ss_pred             CChHHHHHHHHhhcCCCCEEEEeC
Confidence            54311     24567788887763

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.46  E-value=0.021  Score=52.04  Aligned_cols=92  Identities=15%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhh---------------ccCC
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESI---------------VREA  211 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~---------------~~~A  211 (299)
                      +||.....+..| +..---.|.+|+|+|+ +.||..+++++...||+|+.+. ....++..               -..+
T Consensus       124 l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~  200 (315)
T 3goh_A          124 LPCPLLTAWQAF-EKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKY  200 (315)
T ss_dssp             SHHHHHHHHHHH-TTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCE
T ss_pred             CccHHHHHHHHH-hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCc
Confidence            555556666777 3333347999999999 5579999999999999988876 33332210               2457


Q ss_pred             cEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295          212 DIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       212 DIVIsa~g~p~~i-~~~~vk~gavVIDvg~~  241 (299)
                      |+||-++|.+.+- .-+.++++..++.+|..
T Consensus       201 Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~  231 (315)
T 3goh_A          201 FAIFDAVNSQNAAALVPSLKANGHIICIQDR  231 (315)
T ss_dssp             EEEECC-------TTGGGEEEEEEEEEECCC
T ss_pred             cEEEECCCchhHHHHHHHhcCCCEEEEEeCC
Confidence            9999999977652 23567888888888754

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.45  E-value=0.028  Score=50.27  Aligned_cols=52  Identities=25%  Similarity=0.356  Sum_probs=43.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC--------hhhhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD--------PESIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~--------l~~~~~~ADIVIsa~g~  220 (299)
                      +|+|.|++|.+|+.++..|.++|.+|++..|+...        ..+.+..+|.||..+|.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla~~   61 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAGE   61 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhccCCCEEEEeccC
Confidence            69999999999999999999999999999875421        13557899999987764

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.45  E-value=0.0094  Score=55.31  Aligned_cols=95  Identities=16%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             ccCCHHHHHHHHHhhCCCcCC--cEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC--------------------CC
Q 022295          147 LPCTPKGCLELLKRSGVTIKG--KRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT--------------------TD  203 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~g--k~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t--------------------~~  203 (299)
                      +|+.....+..|.+..---.|  ++|+|.|+++.+|..+++++...|+ +|+++.++.                    .+
T Consensus       139 l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~  218 (357)
T 2zb4_A          139 IGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDN  218 (357)
T ss_dssp             TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSC
T ss_pred             cccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchH
Confidence            344444556666333333468  9999999967789999999999999 988876542                    11


Q ss_pred             hhhhcc-----CCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          204 PESIVR-----EADIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       204 l~~~~~-----~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                      +.+.++     ..|++|.++|...+ ---+.++++..++.+|..
T Consensus       219 ~~~~~~~~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~  262 (357)
T 2zb4_A          219 VAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQI  262 (357)
T ss_dssp             HHHHHHHHCTTCEEEEEESCCHHHHHHHHHTEEEEEEEEECCCG
T ss_pred             HHHHHHHhcCCCCCEEEECCCHHHHHHHHHHhccCcEEEEECCc
Confidence            111111     37888888885222 112456777777888764

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.44  E-value=0.021  Score=52.37  Aligned_cols=58  Identities=14%  Similarity=0.281  Sum_probs=41.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCCC--------------------hhhhcc-----CCcEEEEe
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTTD--------------------PESIVR-----EADIVIAA  217 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~~--------------------l~~~~~-----~ADIVIsa  217 (299)
                      ++++++|+|.|+++.+|+.++..|+++| ++|+++.+....                    +.+.++     ..|+||..
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~  122 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHE  122 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEEC
Confidence            3578999999999999999999999999 899988764321                    123343     48999988


Q ss_pred             cCCC
Q 022295          218 AGQA  221 (299)
Q Consensus       218 ~g~p  221 (299)
                      +|..
T Consensus       123 A~~~  126 (357)
T 2x6t_A          123 GACS  126 (357)
T ss_dssp             CSCC
T ss_pred             Cccc
Confidence            7743

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=95.43  E-value=0.0078  Score=55.75  Aligned_cols=53  Identities=25%  Similarity=0.327  Sum_probs=45.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC-CC-CChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS-HT-TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~-~t-~~l~~~~~~ADIVIsa~g~  220 (299)
                      .+|+|.|++|.+|+.++..|+++|. +|+.+++ .. ..+.+.++++|+||..+|.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~   56 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGV   56 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcC
Confidence            3799999999999999999999998 9999887 32 3466778899999988774

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=95.43  E-value=0.02  Score=53.23  Aligned_cols=95  Identities=13%  Similarity=0.130  Sum_probs=62.3

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC----------------------
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD----------------------  203 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~----------------------  203 (299)
                      .+||.+..++..|.+..---.|.+|+|+|+++.||..+++++...||+|+++-+...+                      
T Consensus       147 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~  226 (357)
T 1zsy_A          147 TLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEEL  226 (357)
T ss_dssp             HTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHH
T ss_pred             hhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcc
Confidence            4566666666677655434479999999997778999999988899976544322111                      


Q ss_pred             ----hhhhcc---CCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295          204 ----PESIVR---EADIVIAAAGQAMMI-KGSWIKPGAAVIDVGT  240 (299)
Q Consensus       204 ----l~~~~~---~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~  240 (299)
                          +.+.+.   .+|+||-++|.+... .-+.++++..++.+|.
T Consensus       227 ~~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~  271 (357)
T 1zsy_A          227 RRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGG  271 (357)
T ss_dssp             HSGGGGGTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCC
T ss_pred             hHHHHHHHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEec
Confidence                111122   368888888865432 2356788777888874

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.42  E-value=0.023  Score=51.07  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=33.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~   61 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGI   61 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            3578999999999988999999999999999998864

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=95.42  E-value=0.0079  Score=52.98  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~   39 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDIN   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998889999999999999999998765

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=95.42  E-value=0.034  Score=47.99  Aligned_cols=35  Identities=20%  Similarity=0.232  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   35 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARS   35 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999999889999999999999999988765

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.42  E-value=0.022  Score=53.21  Aligned_cols=95  Identities=16%  Similarity=0.165  Sum_probs=62.3

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC---------------------CCh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT---------------------TDP  204 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t---------------------~~l  204 (299)
                      +||.....+..+.+..---.|.+|+|+|+|. ||..+++++...|+ +|+.+.+..                     .++
T Consensus       172 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~  250 (373)
T 1p0f_A          172 IGCGFATGYGAAVNTAKVTPGSTCAVFGLGG-VGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPI  250 (373)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCH
T ss_pred             hhhHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchH
Confidence            3444444444443333334689999999755 69999999888898 787775331                     123


Q ss_pred             hhhcc-----CCcEEEEecCCCCcCC--CCccCCC-eEEEEeeccC
Q 022295          205 ESIVR-----EADIVIAAAGQAMMIK--GSWIKPG-AAVIDVGTNA  242 (299)
Q Consensus       205 ~~~~~-----~ADIVIsa~g~p~~i~--~~~vk~g-avVIDvg~~~  242 (299)
                      .+.++     .+|+||-++|.+..+.  -+.++++ ..++.+|...
T Consensus       251 ~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~  296 (373)
T 1p0f_A          251 YEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLAS  296 (373)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             HHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCC
Confidence            22222     4799999999765432  3567888 8888888643

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=95.41  E-value=0.012  Score=50.81  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~   38 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARD   38 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            47899999999999999999999999999998765

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.41  E-value=0.021  Score=53.32  Aligned_cols=94  Identities=18%  Similarity=0.227  Sum_probs=62.7

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC---------------------CC
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT---------------------TD  203 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t---------------------~~  203 (299)
                      .+||.....+..+.+..-.-.|.+|+|+|+|. ||..+++++...|+ +|+.+.+..                     .+
T Consensus       175 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~  253 (376)
T 1e3i_A          175 LIGCGFSSGYGAAINTAKVTPGSTCAVFGLGC-VGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKP  253 (376)
T ss_dssp             GGGTHHHHHHHHHHTTSCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSC
T ss_pred             hhccHHHHHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccch
Confidence            45554444555554333334689999999754 69999999999999 787775331                     12


Q ss_pred             hhhhcc-----CCcEEEEecCCCCcCC--CCccCCC-eEEEEeec
Q 022295          204 PESIVR-----EADIVIAAAGQAMMIK--GSWIKPG-AAVIDVGT  240 (299)
Q Consensus       204 l~~~~~-----~ADIVIsa~g~p~~i~--~~~vk~g-avVIDvg~  240 (299)
                      +.+.++     .+|+||-++|.+..+.  -++++++ ..++-+|.
T Consensus       254 ~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          254 VQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECC
Confidence            222222     4899999999765432  3567887 78888886

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.41  E-value=0.011  Score=55.45  Aligned_cols=87  Identities=29%  Similarity=0.400  Sum_probs=61.7

Q ss_pred             HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-------------------CCChhhhcc----
Q 022295          154 CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-------------------TTDPESIVR----  209 (299)
Q Consensus       154 v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-------------------t~~l~~~~~----  209 (299)
                      .+..++..++ -.|.+|+|+|+|. ||..+++++...|+ +|+++.+.                   +.++.+.++    
T Consensus       171 a~~~l~~~~~-~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~  248 (370)
T 4ej6_A          171 CLHGVDLSGI-KAGSTVAILGGGV-IGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVG  248 (370)
T ss_dssp             HHHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTS
T ss_pred             HHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhh
Confidence            4455555544 3689999999855 79999999999999 78777533                   234444443    


Q ss_pred             ----CCcEEEEecCCCCcCC--CCccCCCeEEEEeeccC
Q 022295          210 ----EADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       210 ----~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~~  242 (299)
                          .+|+||.++|.+..+.  -+.+++|..++.+|...
T Consensus       249 ~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~  287 (370)
T 4ej6_A          249 LVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLP  287 (370)
T ss_dssp             SSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             ccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccC
Confidence                3899999999765432  35678888888898654

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=95.40  E-value=0.0095  Score=52.60  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999998765

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.40  E-value=0.015  Score=56.05  Aligned_cols=111  Identities=26%  Similarity=0.411  Sum_probs=66.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh-----------------hhhccCCcEEEEecCCCCcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP-----------------ESIVREADIVIAAAGQAMMIKG  226 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l-----------------~~~~~~ADIVIsa~g~p~~i~~  226 (299)
                      +++||+|.|||.|+. |+..|.+|.++|++|+.++++....                 .+.+..+|.||.+.|.|.-. +
T Consensus         2 ~~~~~~v~viG~G~~-G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~-p   79 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAH-P   79 (439)
T ss_dssp             CCTTCCEEEECCHHH-HHHHHHHHHTTTCCCEEEESSSSCTTGGGSCTTSCEEESSCCHHHHHTCSEEEECTTSCTTC-H
T ss_pred             CCCCCEEEEEeecHH-HHHHHHHHHhCCCEEEEEECCCCcchhHHhhCCCEEEECCCcHHHhccCCEEEeCCCCCCCC-H
Confidence            468899999999997 9999999999999999998764221                 12233456666555533210 1


Q ss_pred             CccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295          227 SWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA  293 (299)
Q Consensus       227 ~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~  293 (299)
                      +...        ..   +     .+..+.++.++-.-.-....| -|-|--|.=||..|+.++++++
T Consensus        80 ~~~~--------a~---~-----~~~~v~~~~~~~~~~~~~~vI-~VTGTnGKTTT~~ml~~iL~~~  129 (439)
T 2x5o_A           80 SLSA--------AA---D-----AGIEIVGDIELFCREAQAPIV-AITGSNGKSTVTTLVGEMAKAA  129 (439)
T ss_dssp             HHHH--------HH---H-----TTCEEECHHHHHHHHCCSCEE-EEECSSSHHHHHHHHHHHHHHT
T ss_pred             HHHH--------HH---H-----CCCcEEEHHHHHHHhcCCCEE-EEECCCCHHHHHHHHHHHHHhc
Confidence            1100        00   0     011355554422111111122 3668889999999999988764

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=95.38  E-value=0.023  Score=53.55  Aligned_cols=76  Identities=26%  Similarity=0.316  Sum_probs=52.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCC---CeEEEEcCCCC----------Ch------hhhccCCcEEEEecCCCC--cCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKAD---ATVTIVHSHTT----------DP------ESIVREADIVIAAAGQAM--MIK  225 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~g---atVtv~~~~t~----------~l------~~~~~~ADIVIsa~g~p~--~i~  225 (299)
                      |-+|.|+|++|.+|.-+..+|.+++   .++..+.|...          ++      .+.+.++|+||.|+|.-.  -+-
T Consensus         1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a   80 (344)
T 3tz6_A            1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQA   80 (344)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHHHHHHH
Confidence            4589999999999999999999873   34555554321          11      123578999999987411  122


Q ss_pred             CCccCCCeEEEEeeccC
Q 022295          226 GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       226 ~~~vk~gavVIDvg~~~  242 (299)
                      +..++.|+.|||.+..+
T Consensus        81 ~~~~~~G~~vID~Sa~~   97 (344)
T 3tz6_A           81 PRFAAAGVTVIDNSSAW   97 (344)
T ss_dssp             HHHHHTTCEEEECSSTT
T ss_pred             HHHHhCCCEEEECCCcc
Confidence            23457799999999865

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.37  E-value=0.019  Score=51.23  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=36.0

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++..
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAV   41 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccch
Confidence            4689999999999999999999999999999999987643

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.37  E-value=0.011  Score=52.95  Aligned_cols=64  Identities=11%  Similarity=0.212  Sum_probs=48.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCc---CC--CCccCCCeEEEEee
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMM---IK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~---i~--~~~vk~gavVIDvg  239 (299)
                      .+|.|||.|.+ |.+++..|.+.|.+|+.+++.     +.+++||  |.+++...+   +.  ...+++|++|+|+.
T Consensus         7 mkI~IIG~G~~-G~sLA~~L~~~G~~V~~~~~~-----~~~~~aD--ilavP~~ai~~vl~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A            7 LRVGIFDDGSS-TVNMAEKLDSVGHYVTVLHAP-----EDIRDFE--LVVIDAHGVEGYVEKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             CEEEEECCSCC-CSCHHHHHHHTTCEEEECSSG-----GGGGGCS--EEEECSSCHHHHHHHHHTTCCTTCEEEECC
T ss_pred             cEEEEEeeCHH-HHHHHHHHHHCCCEEEEecCH-----HHhccCC--EEEEcHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            57999998885 999999999999999988763     3378899  555554321   21  13578999999974

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.37  E-value=0.028  Score=48.50  Aligned_cols=54  Identities=20%  Similarity=0.288  Sum_probs=43.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC--------------hhhhcc----CCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD--------------PESIVR----EADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~--------------l~~~~~----~ADIVIsa~g~p  221 (299)
                      |+++|.|+++-+|+.++..|+++|++|+++.++...              +.+.++    ..|+||..+|..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~   73 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVG   73 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCCC
Confidence            579999999999999999999999999998775431              223333    789999888743

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=95.37  E-value=0.01  Score=51.39  Aligned_cols=38  Identities=26%  Similarity=0.317  Sum_probs=34.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   40 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999998764

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.36  E-value=0.02  Score=52.71  Aligned_cols=51  Identities=24%  Similarity=0.363  Sum_probs=41.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC--eEEEEcCC--------------------------CCChhhhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      +|+|||+|. +|.+++..|+..+.  +|++++..                          |.+ .+.+++||+||.++|.
T Consensus         2 kI~ViGaG~-vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            689999965 69999999988875  78888643                          124 5789999999999996


Q ss_pred             C
Q 022295          221 A  221 (299)
Q Consensus       221 p  221 (299)
                      |
T Consensus        80 ~   80 (294)
T 1oju_A           80 A   80 (294)
T ss_dssp             C
T ss_pred             C
Confidence            6

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=95.35  E-value=0.0085  Score=53.08  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=34.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   41 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRN   41 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999989999999999999999999765

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=95.35  E-value=0.011  Score=53.19  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=34.7

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~   49 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRD   49 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999999999989999999999999999998765

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=95.34  E-value=0.021  Score=53.38  Aligned_cols=177  Identities=13%  Similarity=0.184  Sum_probs=113.1

Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHc
Q 022295           42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLG  118 (299)
Q Consensus        42 Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~  118 (299)
                      ++.+-.  .|+...-+ +=..++.++|.++.++.-. +.+   -|-+.+.++-|+.-  +|+|.+-.|-...+  ..+.+
T Consensus        49 l~~lF~--e~STRTR~-SFe~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvls~~--~D~iviR~~~~~~~--~~lA~  120 (321)
T 1oth_A           49 LGMIFE--KRSTRTRL-STETGFALLGGHPCFLTTQ-DIHLGVNESLTDTARVLSSM--ADAVLARVYKQSDL--DTLAK  120 (321)
T ss_dssp             EEEEES--SCCSHHHH-HHHHHHHHTTCEEEEEETT-TSCBTTTBCHHHHHHHHHHH--CSEEEEECSCHHHH--HHHHH
T ss_pred             EEEEec--CCCcchHH-HHHHHHHHcCCeEEEECCC-cCcCCCCCCHHHHHHHHHHh--CCEEEEeCCChhHH--HHHHH
Confidence            444443  34444433 4578899999999877532 221   12344555544442  57899887632111  22222


Q ss_pred             cCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE
Q 022295          119 EISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       119 ~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~  197 (299)
                      ..       .+-.+|.|       .+...||-+.+ ++.+.++.| +++|.+|+++|-+..|.+.++.+|...|++|++|
T Consensus       121 ~~-------~vPVINa~-------~~~~HPtQaLaDl~Ti~e~~g-~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~  185 (321)
T 1oth_A          121 EA-------SIPIINGL-------SDLYHPIQILADYLTLQEHYS-SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAA  185 (321)
T ss_dssp             HC-------SSCEEESC-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEE
T ss_pred             hC-------CCCEEcCC-------CCCCCcHHHHHHHHHHHHHhC-CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEE
Confidence            11       23456632       24568998888 555555554 7999999999998878999999999999999999


Q ss_pred             cCC-------------------------CCChhhhccCCcEEEEec----CCC-----------Cc-CCCCcc---CCCe
Q 022295          198 HSH-------------------------TTDPESIVREADIVIAAA----GQA-----------MM-IKGSWI---KPGA  233 (299)
Q Consensus       198 ~~~-------------------------t~~l~~~~~~ADIVIsa~----g~p-----------~~-i~~~~v---k~ga  233 (299)
                      .-.                         +.++.+.+++||+|.+-+    |..           .+ ++.+.+   +|++
T Consensus       186 ~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~da  265 (321)
T 1oth_A          186 TPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDW  265 (321)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTC
T ss_pred             CCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCC
Confidence            632                         245668899999999843    321           12 455443   6788


Q ss_pred             EEEEeecc
Q 022295          234 AVIDVGTN  241 (299)
Q Consensus       234 vVIDvg~~  241 (299)
                      +++=.+..
T Consensus       266 i~mH~lP~  273 (321)
T 1oth_A          266 TFLHCLPR  273 (321)
T ss_dssp             EEEECSCC
T ss_pred             EEECCCCC
Confidence            88877754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.32  E-value=0.021  Score=53.31  Aligned_cols=96  Identities=19%  Similarity=0.196  Sum_probs=63.5

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC---------------------CC
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT---------------------TD  203 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t---------------------~~  203 (299)
                      .+||.....+..+.+..-.-.|.+|+|+|+|. ||..+++++...|+ +|+.+.+..                     .+
T Consensus       170 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~  248 (373)
T 2fzw_A          170 LLGCGISTGYGAAVNTAKLEPGSVCAVFGLGG-VGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKP  248 (373)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSC
T ss_pred             hhccHHHHHHHHHHhhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccccc
Confidence            34554444444454333334689999999755 69999999988999 787775331                     12


Q ss_pred             hhhhcc-----CCcEEEEecCCCCcCC--CCccCCC-eEEEEeeccC
Q 022295          204 PESIVR-----EADIVIAAAGQAMMIK--GSWIKPG-AAVIDVGTNA  242 (299)
Q Consensus       204 l~~~~~-----~ADIVIsa~g~p~~i~--~~~vk~g-avVIDvg~~~  242 (299)
                      +.+.++     .+|+||.++|.+..+.  -+.++++ ..++.+|...
T Consensus       249 ~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~  295 (373)
T 2fzw_A          249 IQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAA  295 (373)
T ss_dssp             HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred             HHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCC
Confidence            222222     4799999999765432  3567888 8888888643

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.32  E-value=0.025  Score=51.75  Aligned_cols=36  Identities=33%  Similarity=0.305  Sum_probs=32.7

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++++|+|.|+++.+|+.++..|+++|++|+++.+.
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   42 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLT   42 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCC
Confidence            468999999999999999999999999999988764

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=95.31  E-value=0.01  Score=52.24  Aligned_cols=38  Identities=26%  Similarity=0.389  Sum_probs=34.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~   42 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRD   42 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            46789999999999889999999999999999999765

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.31  E-value=0.015  Score=53.69  Aligned_cols=58  Identities=16%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhC-CC-eEEEEcCCCC-------------------------ChhhhccCCcEEEE
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKA-DA-TVTIVHSHTT-------------------------DPESIVREADIVIA  216 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~-ga-tVtv~~~~t~-------------------------~l~~~~~~ADIVIs  216 (299)
                      .++||+|+|.|+++.+|+.++..|+++ |+ +|+++.+...                         .+.+.++..|+||.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            368999999999999999999999999 97 8988866411                         13356778899998


Q ss_pred             ecCCC
Q 022295          217 AAGQA  221 (299)
Q Consensus       217 a~g~p  221 (299)
                      ++|..
T Consensus        98 ~Aa~~  102 (344)
T 2gn4_A           98 AAALK  102 (344)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            88754

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.31  E-value=0.019  Score=51.24  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=34.0

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~   60 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYA   60 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            5689999999999988999999999999999988765

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.30  E-value=0.022  Score=48.00  Aligned_cols=55  Identities=15%  Similarity=0.155  Sum_probs=41.9

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCCC-----------Chh--hhccC--CcEEEEecCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHTT-----------DPE--SIVRE--ADIVIAAAGQ  220 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t~-----------~l~--~~~~~--ADIVIsa~g~  220 (299)
                      .+++|+|.|+++.+|+.++..|+++|+  +|+++.++..           |+.  +.+.+  .|+||.++|.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a~~   75 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGT   75 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhhhcEEEECeee
Confidence            468999999999999999999999998  9998876532           222  11222  7999988774

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.30  E-value=0.0096  Score=52.91  Aligned_cols=38  Identities=34%  Similarity=0.399  Sum_probs=34.7

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   41 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARD   41 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999889999999999999999998764

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=95.29  E-value=0.0093  Score=51.97  Aligned_cols=38  Identities=18%  Similarity=0.356  Sum_probs=34.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   44 (254)
T 2wsb_A            7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDRE   44 (254)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999998765

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.28  E-value=0.015  Score=50.86  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=34.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   47 (265)
T 1h5q_A           11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRS   47 (265)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCc
Confidence            5789999999999999999999999999999998774

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.27  E-value=0.013  Score=54.76  Aligned_cols=96  Identities=18%  Similarity=0.170  Sum_probs=64.2

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-------------------CCChh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-------------------TTDPE  205 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-------------------t~~l~  205 (299)
                      .+||.....+..+.+..---.|++|+|+|.|. ||..+++++...|+ .|+.+.+.                   ..++.
T Consensus       170 ~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~  248 (371)
T 1f8f_A          170 PLGCGIQTGAGACINALKVTPASSFVTWGAGA-VGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPV  248 (371)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEESCSH-HHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HhcchHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHH
Confidence            45665555566564333234689999999754 69999999888898 57766532                   12332


Q ss_pred             hhcc-----CCcEEEEecCCCCcCC--CCccCCCeEEEEeeccC
Q 022295          206 SIVR-----EADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       206 ~~~~-----~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~~  242 (299)
                      +.++     .+|+||.++|.+..+.  -+.++++..++.+|...
T Consensus       249 ~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  292 (371)
T 1f8f_A          249 AAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQ  292 (371)
T ss_dssp             HHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCS
T ss_pred             HHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCC
Confidence            2222     4799999999765432  35678888888888653

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=95.26  E-value=0.034  Score=51.88  Aligned_cols=39  Identities=21%  Similarity=0.293  Sum_probs=35.2

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~   79 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTA   79 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECCh
Confidence            468999999999998899999999999999999987653

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=95.26  E-value=0.011  Score=51.29  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999998765

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.24  E-value=0.0082  Score=53.57  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=34.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~   63 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLA   63 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999999765

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.24  E-value=0.031  Score=54.14  Aligned_cols=54  Identities=30%  Similarity=0.361  Sum_probs=45.3

Q ss_pred             ccccCCHHHHHHH----HHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEcC
Q 022295          145 LFLPCTPKGCLEL----LKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVHS  199 (299)
Q Consensus       145 ~~~PcT~~av~~l----l~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~~  199 (299)
                      ...++|.+|++..    +++.+.+++||+|+|.|.|+ ||..++.+|.+.|++|. ++++
T Consensus       192 ~r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~Gn-VG~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          192 GRDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQ-VGAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             SCSCHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCccchHHHHHHHHHHHHHhcCCCccCCEEEEECcCH-HHHHHHHHHHHCCCEEEEEEcC
Confidence            3457899987765    45579999999999999777 59999999999999877 7776

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.24  E-value=0.035  Score=48.38  Aligned_cols=54  Identities=15%  Similarity=0.211  Sum_probs=42.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC--------------hhhhccC----CcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD--------------PESIVRE----ADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~--------------l~~~~~~----ADIVIsa~g~p  221 (299)
                      |+++|.|+++-+|+.++..|+++|++|+++.++...              +.+.+++    -|+||..+|..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~   73 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLG   73 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            579999999999999999999999999998776421              2233433    49999888853

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=95.24  E-value=0.034  Score=51.50  Aligned_cols=95  Identities=22%  Similarity=0.130  Sum_probs=59.4

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCC----------------CCChhhhc-
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSH----------------TTDPESIV-  208 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~----------------t~~l~~~~-  208 (299)
                      +||.....+..|.+..---.|.+|+|.|+++.+|..+++++...| ++|+...+.                ..++.+.+ 
T Consensus       123 l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~  202 (349)
T 4a27_A          123 FPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNADYVQEVK  202 (349)
T ss_dssp             SHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEECGGGHHHHGGGSSEEEETTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHcCCcEEEcCCccHHHHHH
Confidence            455555555566554444579999999997778999988887775 576665432                12222222 


Q ss_pred             ----cCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          209 ----READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       209 ----~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                          ..+|+||-++|.+.+ ---+.++++..++-+|..
T Consensus       203 ~~~~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~G~~  240 (349)
T 4a27_A          203 RISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSS  240 (349)
T ss_dssp             HHCTTCEEEEEEECC-------CTTEEEEEEEEEEC--
T ss_pred             HhcCCCceEEEECCCchhHHHHHHHhhcCCEEEEECCC
Confidence                248999999987765 223667888888888864

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=95.23  E-value=0.019  Score=52.10  Aligned_cols=60  Identities=20%  Similarity=0.410  Sum_probs=46.4

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCC-------CeEEEEcCCCC---------------C------hhhhc-cCCc
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKAD-------ATVTIVHSHTT---------------D------PESIV-READ  212 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~g-------atVtv~~~~t~---------------~------l~~~~-~~AD  212 (299)
                      +..++|++|+|.|+++.+|+.++..|+++|       ++|+++.+...               |      +.+.+ ...|
T Consensus         9 ~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d   88 (342)
T 2hrz_A            9 NLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVEARPD   88 (342)
T ss_dssp             CSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHHTCCS
T ss_pred             CCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHhcCCC
Confidence            345789999999999999999999999999       78988865421               1      22345 4789


Q ss_pred             EEEEecCCC
Q 022295          213 IVIAAAGQA  221 (299)
Q Consensus       213 IVIsa~g~p  221 (299)
                      +||..+|..
T Consensus        89 ~vih~A~~~   97 (342)
T 2hrz_A           89 VIFHLAAIV   97 (342)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCccC
Confidence            999887743

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.23  E-value=0.011  Score=51.77  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   38 (245)
T 1uls_A            2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (245)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3689999999999999999999999999999998765

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.23  E-value=0.008  Score=52.34  Aligned_cols=37  Identities=19%  Similarity=0.304  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRT   47 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecC
Confidence            5789999999999889999999999999999998764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.23  E-value=0.034  Score=50.32  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++|+|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~   38 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNL   38 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            46899999999999999999999999999998754

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.22  E-value=0.012  Score=53.63  Aligned_cols=39  Identities=15%  Similarity=0.346  Sum_probs=35.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   75 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSP   75 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999999999999899999999999999999997653

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=95.21  E-value=0.0098  Score=53.23  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=34.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   44 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRN   44 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999999999999999999999998765

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.21  E-value=0.0078  Score=53.48  Aligned_cols=38  Identities=21%  Similarity=0.428  Sum_probs=34.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   43 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRS   43 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36899999999999989999999999999999998764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.20  E-value=0.03  Score=51.46  Aligned_cols=52  Identities=25%  Similarity=0.390  Sum_probs=40.3

Q ss_pred             EEEEEcCCccchHHHHHHHhhC--CCeEEEEcCCC--------------------------CChhhhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKA--DATVTIVHSHT--------------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~--gatVtv~~~~t--------------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      +|+|||+|. +|.+++..|+..  +.+|+++++..                          .++.+ +++||+||.++|.
T Consensus         2 kI~VIGaG~-vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            2 KITVIGAGN-VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            689999855 699999999885  67899886542                          23333 8899999999987


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        80 p~   81 (310)
T 1guz_A           80 PR   81 (310)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.18  E-value=0.026  Score=49.91  Aligned_cols=52  Identities=10%  Similarity=0.074  Sum_probs=41.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhh----------------ccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESI----------------VREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~----------------~~~ADIVIsa~g~  220 (299)
                      ++|+|.|+ |.+|+.++..|+++|.+|+.+.++.......                +..+|+||.+++.
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCc
Confidence            78999998 7789999999999999999998764322110                5678999987764

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=95.17  E-value=0.038  Score=48.01  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~   35 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRN   35 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999998765

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=95.16  E-value=0.01  Score=52.24  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   45 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRN   45 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999998765

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.16  E-value=0.011  Score=51.92  Aligned_cols=71  Identities=21%  Similarity=0.289  Sum_probs=53.3

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeE-EEEcCCC------CChhhhc-cCCcEEEEecCCCC-c-CCCCccCCCeEEEEe
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATV-TIVHSHT------TDPESIV-READIVIAAAGQAM-M-IKGSWIKPGAAVIDV  238 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatV-tv~~~~t------~~l~~~~-~~ADIVIsa~g~p~-~-i~~~~vk~gavVIDv  238 (299)
                      +|.|||.|.+ |++++..|.+.|.++ .+++++.      .++.+.+ .++|+||.+++... . +-...++.|..|++.
T Consensus         2 ~vgiIG~G~m-G~~~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~   80 (236)
T 2dc1_A            2 LVGLIGYGAI-GKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVL   80 (236)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEECCCHH-HHHHHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEE
Confidence            6899999775 999999998888886 6887653      3577777 68999999987432 1 223456789889887


Q ss_pred             ec
Q 022295          239 GT  240 (299)
Q Consensus       239 g~  240 (299)
                      ..
T Consensus        81 ~~   82 (236)
T 2dc1_A           81 ST   82 (236)
T ss_dssp             CG
T ss_pred             Cc
Confidence            54

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.16  E-value=0.0072  Score=55.88  Aligned_cols=92  Identities=15%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             ccCCHHHHHHHHHhh-----CCCcCCcEEEEEcCCccchHHHHHHHhhC--CCeEEEEcCCCC--------------Chh
Q 022295          147 LPCTPKGCLELLKRS-----GVTIKGKRAVVVGRSNIVGLPVSLLLLKA--DATVTIVHSHTT--------------DPE  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~~-----~~~l~gk~vvViG~s~~vG~pla~lL~~~--gatVtv~~~~t~--------------~l~  205 (299)
                      +||.....+..|+..     ++  .|.+|+|+|+| .||..+++++...  |++|+.+.+...              +..
T Consensus       148 l~~~~~ta~~al~~~~~~~~~~--~g~~VlV~GaG-~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~  224 (344)
T 2h6e_A          148 LADAGTTSMGAIRQALPFISKF--AEPVVIVNGIG-GLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMK  224 (344)
T ss_dssp             GGTHHHHHHHHHHHHHHHHTTC--SSCEEEEECCS-HHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHH
T ss_pred             hhhhhHHHHHHHHhhhhcccCC--CCCEEEEECCC-HHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccc
Confidence            566555566777766     55  89999999995 5799999999888  999888864321              111


Q ss_pred             -------hhc--cCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295          206 -------SIV--READIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 -------~~~--~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~  241 (299)
                             +..  +.+|+||.++|.+..+  --+.++++..++.+|..
T Consensus       225 ~~~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (344)
T 2h6e_A          225 DAESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGME  271 (344)
T ss_dssp             HHHHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             cchHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCC
Confidence                   111  1579999999977433  23567888888888864

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=95.16  E-value=0.017  Score=52.05  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=35.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ++|+||.++|-|+|.-+|+.+|..|+++||+|.++.++.
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~   43 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRA   43 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            579999999999998899999999999999999998763

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=95.15  E-value=0.012  Score=51.47  Aligned_cols=37  Identities=27%  Similarity=0.318  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   40 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLD   40 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998765

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.15  E-value=0.025  Score=51.83  Aligned_cols=53  Identities=23%  Similarity=0.395  Sum_probs=41.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCC-------------------------CChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHT-------------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      ++|+|||+|. +|.+++..|+..|  .+|++++++.                         .++ +.+++||+||.+++.
T Consensus         2 ~kI~VIGaG~-~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGN-VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence            4799999766 5999999999888  6899886531                         233 557789999999997


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        80 ~~   81 (309)
T 1hyh_A           80 IK   81 (309)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.13  E-value=0.039  Score=49.26  Aligned_cols=55  Identities=15%  Similarity=0.262  Sum_probs=43.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------------------ChhhhccCCcEEEEe
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------------------DPESIVREADIVIAA  217 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------------------~l~~~~~~ADIVIsa  217 (299)
                      .++|+|.|+++.+|+.++..|+++|++|+++.++..                             .+.+.++.+|+||.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            478999999899999999999999999998876521                             133567778999987


Q ss_pred             cCCC
Q 022295          218 AGQA  221 (299)
Q Consensus       218 ~g~p  221 (299)
                      +|..
T Consensus        84 a~~~   87 (313)
T 1qyd_A           84 LAGG   87 (313)
T ss_dssp             CCCS
T ss_pred             Cccc
Confidence            7743

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.12  E-value=0.022  Score=53.42  Aligned_cols=55  Identities=24%  Similarity=0.349  Sum_probs=42.8

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCC-------------------------CCChhhhccCCcEEEEec
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSH-------------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~-------------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      ..++|.|||+|. ||.+++..|+..|.  .|.+++..                         +.+.+ .+++||+||.++
T Consensus        20 ~~~kV~ViGaG~-vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~-~~~daDiVIita   97 (330)
T 3ldh_A           20 SYNKITVVGCDA-VGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS-VSAGSKLVVITA   97 (330)
T ss_dssp             CCCEEEEESTTH-HHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC-SCSSCSEEEECC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH-HhCCCCEEEEeC
Confidence            457999999955 69999999998885  78888643                         12443 489999999999


Q ss_pred             CCCC
Q 022295          219 GQAM  222 (299)
Q Consensus       219 g~p~  222 (299)
                      |.|.
T Consensus        98 G~p~  101 (330)
T 3ldh_A           98 GARQ  101 (330)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9763

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.12  E-value=0.039  Score=51.36  Aligned_cols=55  Identities=25%  Similarity=0.357  Sum_probs=43.1

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC--------------------------CChhhhccCCcEEEEec
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT--------------------------TDPESIVREADIVIAAA  218 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t--------------------------~~l~~~~~~ADIVIsa~  218 (299)
                      +.++|.|||+|. +|.+++..|+..+. +|.+++...                          .+ .+.+++||+||.++
T Consensus         4 ~~~kI~iiGaG~-vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~a   81 (321)
T 3p7m_A            4 ARKKITLVGAGN-IGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTA   81 (321)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcC
Confidence            457899999766 69999999998886 888886431                          12 37789999999999


Q ss_pred             CCCC
Q 022295          219 GQAM  222 (299)
Q Consensus       219 g~p~  222 (299)
                      |.|.
T Consensus        82 g~p~   85 (321)
T 3p7m_A           82 GVPR   85 (321)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            8663

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=95.12  E-value=0.011  Score=52.15  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=34.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   42 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   42 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999998764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.11  E-value=0.0054  Score=56.87  Aligned_cols=95  Identities=20%  Similarity=0.164  Sum_probs=62.2

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------CCChhhhc--
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------TTDPESIV--  208 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------t~~l~~~~--  208 (299)
                      +||.....+..|.+..---.|++|+|+|+++.+|..+++++...|++|+.+.+.                ..++.+.+  
T Consensus       131 l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~lGa~~i~~~~~~~~~~~~  210 (343)
T 3gaz_A          131 LPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSDLEYVRDLGATPIDASREPEDYAAE  210 (343)
T ss_dssp             SHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTSEEEETTSCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCCEeccCCCHHHHHHH
Confidence            455544455555333333479999999976668999999999999998877221                11222221  


Q ss_pred             ----cCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          209 ----READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       209 ----~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                          +.+|+||.++|.+.+ -.-+.++++..++.+|..
T Consensus       211 ~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~  248 (343)
T 3gaz_A          211 HTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGW  248 (343)
T ss_dssp             HHTTSCEEEEEESSCTHHHHHHHHHEEEEEEEEESCCC
T ss_pred             HhcCCCceEEEECCCcHHHHHHHHHHhcCCeEEEEccc
Confidence                258999999986433 123567887788887754

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=95.10  E-value=0.011  Score=51.86  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   40 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARR   40 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999999999999999999999999998765

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.10  E-value=0.036  Score=51.51  Aligned_cols=56  Identities=27%  Similarity=0.383  Sum_probs=44.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC---------------------------CChhhhccCCcEEEEe
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT---------------------------TDPESIVREADIVIAA  217 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t---------------------------~~l~~~~~~ADIVIsa  217 (299)
                      +.++|.|||+|. +|.++|..|+..|. +|++++...                           .+-.+.+++||+||.+
T Consensus         7 ~~~kv~ViGaG~-vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIia   85 (315)
T 3tl2_A            7 KRKKVSVIGAGF-TGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVIT   85 (315)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEe
Confidence            467999999865 69999999999998 899987541                           0113678999999999


Q ss_pred             cCCCC
Q 022295          218 AGQAM  222 (299)
Q Consensus       218 ~g~p~  222 (299)
                      +|.|.
T Consensus        86 ag~p~   90 (315)
T 3tl2_A           86 AGIAR   90 (315)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            98653

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.10  E-value=0.019  Score=50.39  Aligned_cols=39  Identities=18%  Similarity=0.318  Sum_probs=35.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   49 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   49 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            458899999999999999999999999999999987653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.09  E-value=0.018  Score=50.20  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|++ |+.|.++.++
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~   37 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRN   37 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESC
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCC
Confidence            46899999999999999999999987 8899888765

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=95.08  E-value=0.0089  Score=52.88  Aligned_cols=37  Identities=24%  Similarity=0.296  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   39 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRT   39 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999998765

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.07  E-value=0.042  Score=50.00  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++++|+|.|+++.+|+.++..|+++|++|+++.+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   60 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   60 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999999999999999999999988764

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=95.07  E-value=0.013  Score=52.65  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   38 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKS   38 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            4789999999999999999999999999999999765

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.05  E-value=0.013  Score=54.21  Aligned_cols=84  Identities=17%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             HHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-------------------CCChhhhc------
Q 022295          155 LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-------------------TTDPESIV------  208 (299)
Q Consensus       155 ~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-------------------t~~l~~~~------  208 (299)
                      +..++..++  .|++|+|+|+| .+|..+++++...|+ +|+.+.+.                   ..++.+.+      
T Consensus       158 ~~~l~~~~~--~g~~VlV~GaG-~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g  234 (348)
T 2d8a_A          158 VDTVLAGPI--SGKSVLITGAG-PLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDG  234 (348)
T ss_dssp             HHHHTTSCC--TTCCEEEECCS-HHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTT
T ss_pred             HHHHHhcCC--CCCEEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCC
Confidence            444544455  99999999995 579999999999999 88887543                   12332222      


Q ss_pred             cCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          209 READIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       209 ~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                      +.+|+||.++|.+..+.  -+.++++..++.+|..
T Consensus       235 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  269 (348)
T 2d8a_A          235 NGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLY  269 (348)
T ss_dssp             SCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccC
Confidence            25899999999755432  2567888889999864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.05  E-value=0.042  Score=51.48  Aligned_cols=56  Identities=25%  Similarity=0.432  Sum_probs=43.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCC-------------------------CCChhhhccCCcEEEEe
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSH-------------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~-------------------------t~~l~~~~~~ADIVIsa  217 (299)
                      ...++|.|||+|. ||..++..|+.+|.  .+.+++..                         +.+. +.+++||+||.+
T Consensus        17 ~~~~kV~ViGaG~-vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGVGA-VGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEEC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEc
Confidence            4568999999865 69999999988885  78888643                         1233 469999999999


Q ss_pred             cCCCC
Q 022295          218 AGQAM  222 (299)
Q Consensus       218 ~g~p~  222 (299)
                      .|.|.
T Consensus        95 aG~~~   99 (331)
T 4aj2_A           95 AGARQ   99 (331)
T ss_dssp             CSCCC
T ss_pred             cCCCC
Confidence            99653

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.04  E-value=0.038  Score=51.11  Aligned_cols=54  Identities=26%  Similarity=0.429  Sum_probs=42.6

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC--CeEEEEcCC-----------------------CCChhhhccCCcEEEEecCCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSH-----------------------TTDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~-----------------------t~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      +|+|+|++|.||.+++..|+..+  .+|.+++..                       |.++++.+++||+||.++|.|.
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999985557999999999887  578887532                       1246667999999999998764

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.04  E-value=0.014  Score=52.00  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~   39 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDRE   39 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3789999999999999999999999999999998765

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=95.03  E-value=0.0074  Score=55.10  Aligned_cols=91  Identities=23%  Similarity=0.257  Sum_probs=58.1

Q ss_pred             CHHHHHHHHHhhCCCcC-CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhh--------------------c
Q 022295          150 TPKGCLELLKRSGVTIK-GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESI--------------------V  208 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~-gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~--------------------~  208 (299)
                      |++..+..+++.++... |+ |+|.|+++.||..+++++...||+|+.+.+....++..                    .
T Consensus       130 ta~~al~~~~~~~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~  208 (324)
T 3nx4_A          130 TAMLCVMALEDAGIRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLE  208 (324)
T ss_dssp             HHHHHHHHHHHTTCCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSC
T ss_pred             HHHHHHHHhhhcccCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhc
Confidence            44444555566655443 56 99999977789999999999999988876543222100                    0


Q ss_pred             -cCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          209 -READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       209 -~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                       ...|++|-++|.+.+ -.-+.++++-.++.+|..
T Consensus       209 ~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          209 KQLWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             CCCccEEEECCCcHHHHHHHHHHhcCCEEEEEecC
Confidence             135677777765422 122456777777777754

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.03  E-value=0.017  Score=54.05  Aligned_cols=94  Identities=18%  Similarity=0.152  Sum_probs=62.0

Q ss_pred             ccCCHHHHHHHHHh-hCCCc----CCcEEEEEcCCccchHHHHHHHhh-CCCeEEEEcCCC------------------C
Q 022295          147 LPCTPKGCLELLKR-SGVTI----KGKRAVVVGRSNIVGLPVSLLLLK-ADATVTIVHSHT------------------T  202 (299)
Q Consensus       147 ~PcT~~av~~ll~~-~~~~l----~gk~vvViG~s~~vG~pla~lL~~-~gatVtv~~~~t------------------~  202 (299)
                      +||.....+..|.+ .++..    .|.+|+|+|+++.||..+++++.. .|++|+.+.++.                  .
T Consensus       147 l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~  226 (363)
T 4dvj_A          147 LPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSK  226 (363)
T ss_dssp             SHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTS
T ss_pred             hhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC
Confidence            45544445555533 33321    699999999777789998888876 588998886541                  2


Q ss_pred             Chhhhc-----cCCcEEEEecCCCCcCC--CCccCCCeEEEEeec
Q 022295          203 DPESIV-----READIVIAAAGQAMMIK--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       203 ~l~~~~-----~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~  240 (299)
                      ++.+.+     ...|+||.++|.+..+.  -+.++++..++.+|.
T Consensus       227 ~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~  271 (363)
T 4dvj_A          227 PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD  271 (363)
T ss_dssp             CHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSC
T ss_pred             CHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECC
Confidence            233322     25799999998765432  356788877777764

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.02  E-value=0.035  Score=49.80  Aligned_cols=57  Identities=18%  Similarity=0.264  Sum_probs=42.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------C------hhhhccC--CcEEEEecCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------D------PESIVRE--ADIVIAAAGQ  220 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------~------l~~~~~~--ADIVIsa~g~  220 (299)
                      ..+-++|+|.|+++.+|+.++..|+++|++|+++.+...           |      +.+.++.  .|+||..+|.
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            345689999999999999999999999999998876532           2      2234444  7999988774

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.00  E-value=0.013  Score=55.97  Aligned_cols=72  Identities=17%  Similarity=0.283  Sum_probs=51.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC---CeEEEEcCCCC----------------------------ChhhhccC--CcEE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD---ATVTIVHSHTT----------------------------DPESIVRE--ADIV  214 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g---atVtv~~~~t~----------------------------~l~~~~~~--ADIV  214 (299)
                      ++|+|+|+|+ +|+.++..|++.+   ..|+++.++..                            ++.+.+++  +|+|
T Consensus         2 ~kVlIiGaGg-iG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV   80 (405)
T 4ina_A            2 AKVLQIGAGG-VGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV   80 (405)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence            5899999976 5999999999988   48999876421                            13344555  8999


Q ss_pred             EEecCCCC--cCCCCccCCCeEEEEeec
Q 022295          215 IAAAGQAM--MIKGSWIKPGAAVIDVGT  240 (299)
Q Consensus       215 Isa~g~p~--~i~~~~vk~gavVIDvg~  240 (299)
                      |+++|...  .+-...++.|..++|+..
T Consensus        81 in~ag~~~~~~v~~a~l~~g~~vvD~a~  108 (405)
T 4ina_A           81 LNIALPYQDLTIMEACLRTGVPYLDTAN  108 (405)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCCEEESSC
T ss_pred             EECCCcccChHHHHHHHHhCCCEEEecC
Confidence            99988421  123345677888999743

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.00  E-value=0.048  Score=52.94  Aligned_cols=82  Identities=20%  Similarity=0.226  Sum_probs=61.0

Q ss_pred             HHHhhCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCCC---------------CChhhhccCCc
Q 022295          157 LLKRSGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSHT---------------TDPESIVREAD  212 (299)
Q Consensus       157 ll~~~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~t---------------~~l~~~~~~AD  212 (299)
                      +.+..+.+++|++|.|+|-+         +.-...++..|.++|++|.+.+-.-               .++.+.++.||
T Consensus       308 ~~~~~~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad  387 (450)
T 3gg2_A          308 FSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAE  387 (450)
T ss_dssp             HHHHTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCS
T ss_pred             HHHHhcccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCC
Confidence            33445678999999999943         2236788999999999999986432               34567889999


Q ss_pred             EEEEecCCCCcCCCCc--cC---CCeEEEEe
Q 022295          213 IVIAAAGQAMMIKGSW--IK---PGAAVIDV  238 (299)
Q Consensus       213 IVIsa~g~p~~i~~~~--vk---~gavVIDv  238 (299)
                      .||.+|..+.|-..+|  ++   .+.+|+|.
T Consensus       388 ~~vi~t~~~~f~~~~~~~~~~~~~~~~i~D~  418 (450)
T 3gg2_A          388 ALFHVTEWKEFRMPDWSALSQAMAASLVIDG  418 (450)
T ss_dssp             CEEECSCCGGGSSCCHHHHHHHSSSCEEEES
T ss_pred             EEEEccCCHHHhhcCHHHHHHhcCCCEEEEC
Confidence            9999999998854443  32   25689994

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=95.00  E-value=0.012  Score=51.83  Aligned_cols=37  Identities=30%  Similarity=0.389  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRN   40 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998765

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=95.00  E-value=0.0096  Score=52.99  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   53 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRD   53 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999998764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=94.98  E-value=0.0097  Score=52.92  Aligned_cols=38  Identities=29%  Similarity=0.421  Sum_probs=34.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   43 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRR   43 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999998765

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.98  E-value=0.038  Score=49.32  Aligned_cols=53  Identities=23%  Similarity=0.209  Sum_probs=42.3

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCCC-----------------------hhhhccCCcEEEEecC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTTD-----------------------PESIVREADIVIAAAG  219 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~~-----------------------l~~~~~~ADIVIsa~g  219 (299)
                      .|+|+|.|+++.+|+.++..|+++| ++|+++.++...                       +.+.++.+|+||..+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            5889999999999999999999988 899988765321                       2345677888887766

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=94.97  E-value=0.013  Score=51.93  Aligned_cols=37  Identities=22%  Similarity=0.452  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   40 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998764

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=94.97  E-value=0.014  Score=51.16  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDIN   39 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999999999999999999999999998764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.97  E-value=0.02  Score=50.79  Aligned_cols=53  Identities=19%  Similarity=0.224  Sum_probs=41.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------ChhhhccC-CcEEEEecC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------DPESIVRE-ADIVIAAAG  219 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------~l~~~~~~-ADIVIsa~g  219 (299)
                      ++++|+|.|+ |.+|+.++..|+++|.+|+.+.++..                 .+.+.++. +|+||..+|
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            4689999995 66899999999999999999876532                 12344555 899997765

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.96  E-value=0.029  Score=49.48  Aligned_cols=38  Identities=32%  Similarity=0.466  Sum_probs=34.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQ   40 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            45789999999999999999999999999999998764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.96  E-value=0.013  Score=51.93  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=34.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -.++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   44 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAART   44 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            35789999999999889999999999999999998765

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=94.95  E-value=0.017  Score=50.37  Aligned_cols=34  Identities=35%  Similarity=0.423  Sum_probs=31.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~  197 (299)
                      .++||.++|.|+++-+|+.++..|+++|++|.++
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~   37 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIH   37 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence            3689999999999889999999999999999885

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.94  E-value=0.023  Score=52.54  Aligned_cols=71  Identities=24%  Similarity=0.331  Sum_probs=52.8

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------------CChhhhccCCcEEEEecCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      ..+|.|||.|. +|..++..|.+.|..|+++.+..                          .+..+ +..+|+||.++..
T Consensus         3 ~mkI~IiGaG~-~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGA-VGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCH-HHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCH-HHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            36899999877 59999999999999999997631                          23333 5789999999986


Q ss_pred             CCc---CC--CCccCCCeEEEEee
Q 022295          221 AMM---IK--GSWIKPGAAVIDVG  239 (299)
Q Consensus       221 p~~---i~--~~~vk~gavVIDvg  239 (299)
                      +.+   +.  ...++++++|+.+-
T Consensus        81 ~~~~~~~~~l~~~l~~~~~iv~~~  104 (335)
T 3ghy_A           81 PALESVAAGIAPLIGPGTCVVVAM  104 (335)
T ss_dssp             HHHHHHHGGGSSSCCTTCEEEECC
T ss_pred             hhHHHHHHHHHhhCCCCCEEEEEC
Confidence            432   11  24577889998864

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=94.94  E-value=0.013  Score=52.44  Aligned_cols=37  Identities=14%  Similarity=0.353  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   60 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRS   60 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999998765

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.93  E-value=0.013  Score=51.86  Aligned_cols=37  Identities=14%  Similarity=0.272  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   46 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998654

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=94.92  E-value=0.034  Score=50.52  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +|+|+|.|+++.+|+.++..|+++|++|+++.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEec
Confidence            579999999999999999999999999998854

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=94.91  E-value=0.042  Score=53.13  Aligned_cols=52  Identities=23%  Similarity=0.287  Sum_probs=44.3

Q ss_pred             ccccCCHHHHHHHH----HhhCCC-cCCcEEEEEcCCccchHHHHHHHhh-CCCeEEEE
Q 022295          145 LFLPCTPKGCLELL----KRSGVT-IKGKRAVVVGRSNIVGLPVSLLLLK-ADATVTIV  197 (299)
Q Consensus       145 ~~~PcT~~av~~ll----~~~~~~-l~gk~vvViG~s~~vG~pla~lL~~-~gatVtv~  197 (299)
                      +..++|++|++..+    ++.+.+ ++||++.|+|.|.+ |+.+|.+|.. .|++|..+
T Consensus       185 ~~~~aTg~Gv~~~~~~~~~~~G~~~l~gktvgI~G~G~V-G~~vA~~l~~~~G~kVv~~  242 (419)
T 1gtm_A          185 GRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNA-GYYLAKIMSEDFGMKVVAV  242 (419)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHH-HHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcchhhHHHHHHHHHHHHhCCcccCCCEEEEEcCCHH-HHHHHHHHHHhcCCEEEEE
Confidence            44579999987665    457899 99999999998885 9999999999 99998866

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=94.91  E-value=0.021  Score=50.11  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=34.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            47899999999999999999999999999999987654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.90  E-value=0.013  Score=53.15  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=34.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~   64 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVD   64 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999999999998765

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=94.90  E-value=0.019  Score=50.51  Aligned_cols=53  Identities=23%  Similarity=0.277  Sum_probs=43.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------C------hhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------D------PESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------~------l~~~~~~ADIVIsa~g~  220 (299)
                      |+++|.|+++.+|+.++..|+++|++|+++.++..            |      +.+.++..|+||..+|.
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            68999999999999999999999999998876432            1      34567789999988774

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.87  E-value=0.033  Score=54.29  Aligned_cols=53  Identities=19%  Similarity=0.181  Sum_probs=44.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------------CCChhhhccCCcE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------------TTDPESIVREADI  213 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------------t~~l~~~~~~ADI  213 (299)
                      ++++|||.|- ||-|+|..|++.|.+|+.++..                                  |.+..+.++.||+
T Consensus        22 ~~IaViGlGY-VGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~  100 (444)
T 3vtf_A           22 ASLSVLGLGY-VGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDA  100 (444)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSE
T ss_pred             CEEEEEccCH-HHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCc
Confidence            6899999877 6999999999999999988632                                  2345577889999


Q ss_pred             EEEecCCC
Q 022295          214 VIAAAGQA  221 (299)
Q Consensus       214 VIsa~g~p  221 (299)
                      +|.++|.|
T Consensus       101 ~~I~VpTP  108 (444)
T 3vtf_A          101 TFIAVGTP  108 (444)
T ss_dssp             EEECCCCC
T ss_pred             eEEEecCC
Confidence            99999876

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.87  E-value=0.028  Score=50.04  Aligned_cols=39  Identities=23%  Similarity=0.375  Sum_probs=34.9

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..+++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~   54 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   54 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            456899999999999999999999999999999998764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=94.87  E-value=0.017  Score=52.13  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=34.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~   80 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLD   80 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999989999999999999999988654

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=94.86  E-value=0.011  Score=52.03  Aligned_cols=37  Identities=38%  Similarity=0.485  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   39 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998764

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=94.86  E-value=0.04  Score=51.14  Aligned_cols=56  Identities=14%  Similarity=0.311  Sum_probs=44.1

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCC-------eEEEEcCC----------------------------CCChhhhccCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADA-------TVTIVHSH----------------------------TTDPESIVREA  211 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~ga-------tVtv~~~~----------------------------t~~l~~~~~~A  211 (299)
                      ..+|+|+|++|.||.+++..|+.++.       +|.+++..                            +.++.+.++.|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            35899999867789999999988874       68877654                            02456789999


Q ss_pred             cEEEEecCCCC
Q 022295          212 DIVIAAAGQAM  222 (299)
Q Consensus       212 DIVIsa~g~p~  222 (299)
                      |+||.++|.|.
T Consensus        85 D~Vi~~ag~~~   95 (329)
T 1b8p_A           85 DVALLVGARPR   95 (329)
T ss_dssp             SEEEECCCCCC
T ss_pred             CEEEEeCCCCC
Confidence            99999988654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.86  E-value=0.029  Score=48.92  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~   46 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLD   46 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.86  E-value=0.012  Score=52.17  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=34.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARD   62 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            35789999999999889999999999999999998765

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=94.85  E-value=0.0098  Score=53.32  Aligned_cols=38  Identities=26%  Similarity=0.307  Sum_probs=34.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~   59 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTD   59 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999989999999999999999998654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=94.85  E-value=0.014  Score=52.47  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~   60 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVN   60 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999989999999999999999998765

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=94.85  E-value=0.038  Score=50.06  Aligned_cols=35  Identities=23%  Similarity=0.263  Sum_probs=29.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ++||+|+|.|+++.+|+.++..|+++|++|+.+.+
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r   37 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVR   37 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEC
Confidence            36899999999999999999999999999987644

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.84  E-value=0.011  Score=53.24  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   62 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADID   62 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35899999999999888999999999999999998765

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=94.84  E-value=0.023  Score=50.35  Aligned_cols=38  Identities=34%  Similarity=0.380  Sum_probs=34.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   68 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSH   68 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999999999999999999999999987654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=94.83  E-value=0.0096  Score=53.65  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=31.0

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   66 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRR   66 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            46899999999999889999999999999999998765

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=94.82  E-value=0.015  Score=51.28  Aligned_cols=37  Identities=30%  Similarity=0.397  Sum_probs=33.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   38 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            6799999999999899999999999999999987653

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=94.82  E-value=0.031  Score=53.12  Aligned_cols=73  Identities=23%  Similarity=0.299  Sum_probs=51.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCCCC----------Ch------hhhccCCcEEEEecCCCCcCC---
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSHTT----------DP------ESIVREADIVIAAAGQAMMIK---  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~t~----------~l------~~~~~~ADIVIsa~g~p~~i~---  225 (299)
                      .+|.|||++|.+|.-+..+|.+++.   +++...+...          ++      .+.+..+|+||.|+|.  ...   
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~--~~s~~~   80 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGS--STSAKY   80 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCH--HHHHHH
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCCh--HhHHHH
Confidence            4799999999999999999998743   4454443211          11      1335789999999873  222   


Q ss_pred             -CCccCCCeEEEEeeccC
Q 022295          226 -GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       226 -~~~vk~gavVIDvg~~~  242 (299)
                       +..++.|+.|||.+..+
T Consensus        81 a~~~~~~G~~vIDlSa~~   98 (366)
T 3pwk_A           81 APYAVKAGVVVVDNTSYF   98 (366)
T ss_dssp             HHHHHHTTCEEEECSSTT
T ss_pred             HHHHHHCCCEEEEcCCcc
Confidence             23457799999999875

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.82  E-value=0.029  Score=49.46  Aligned_cols=38  Identities=21%  Similarity=0.344  Sum_probs=33.3

Q ss_pred             CCcCCcEEEEEcCCcc--chHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNI--VGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~--vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++.  +|+.++..|+++|++|.++.+.
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~   42 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAG   42 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCc
Confidence            4689999999999855  7999999999999999988654

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=94.81  E-value=0.033  Score=45.67  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=51.2

Q ss_pred             CcEEEEEcCC---ccchHHHHHHHhhCCCeEEEEcCCC-----------CChhhhccCCcEEEEecCCCC---cCCCCc-
Q 022295          167 GKRAVVVGRS---NIVGLPVSLLLLKADATVTIVHSHT-----------TDPESIVREADIVIAAAGQAM---MIKGSW-  228 (299)
Q Consensus       167 gk~vvViG~s---~~vG~pla~lL~~~gatVtv~~~~t-----------~~l~~~~~~ADIVIsa~g~p~---~i~~~~-  228 (299)
                      -++|.|||.|   +..|.+++..|.+.|.+|+.+|.+.           +++.+.....|++|.+++.+.   .+. +. 
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp~~~v~~v~~-~~~   91 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNSEAAWGVAQ-EAI   91 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCSTHHHHHHH-HHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeCHHHHHHHHH-HHH
Confidence            4789999996   4469999999999999999888654           356666678899999988432   121 12 


Q ss_pred             -cCCCeEEEEee
Q 022295          229 -IKPGAAVIDVG  239 (299)
Q Consensus       229 -vk~gavVIDvg  239 (299)
                       ...+.++++.|
T Consensus        92 ~~g~~~i~i~~~  103 (145)
T 2duw_A           92 AIGAKTLWLQLG  103 (145)
T ss_dssp             HHTCCEEECCTT
T ss_pred             HcCCCEEEEcCC
Confidence             23456777643

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=94.81  E-value=0.03  Score=49.95  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=34.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   43 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRC   43 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            5789999999999989999999999999999998764

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=94.81  E-value=0.027  Score=49.45  Aligned_cols=37  Identities=32%  Similarity=0.501  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   37 (255)
T 2q2v_A            1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFG   37 (255)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999989999999999999999988654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.81  E-value=0.019  Score=53.42  Aligned_cols=70  Identities=21%  Similarity=0.341  Sum_probs=52.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------CChhhhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      +|.|||.|.+ |.+++..|++.|.+|++++++.                            .++.+.+.++|+||.++..
T Consensus        17 kI~iIG~G~m-G~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~   95 (366)
T 1evy_A           17 KAVVFGSGAF-GTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT   95 (366)
T ss_dssp             EEEEECCSHH-HHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH
T ss_pred             eEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh
Confidence            7999998775 9999999999999999997541                            2344567889999999974


Q ss_pred             CC---cCCC------CccCC-CeEEEEee
Q 022295          221 AM---MIKG------SWIKP-GAAVIDVG  239 (299)
Q Consensus       221 p~---~i~~------~~vk~-gavVIDvg  239 (299)
                      ..   .+..      ..+++ +++|||+.
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~  124 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCT  124 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEEC
Confidence            32   1221      24567 89999985

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=94.78  E-value=0.027  Score=53.26  Aligned_cols=39  Identities=8%  Similarity=0.009  Sum_probs=33.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      ...+++|+|.|+++.+|+.++..|+++|++|+++.+...
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            356789999999999999999999999999998876543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=94.77  E-value=0.038  Score=50.37  Aligned_cols=54  Identities=24%  Similarity=0.241  Sum_probs=43.1

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCC-----CeEEEEcCCCC--------------C------hhhhccC---CcEEEEec
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKAD-----ATVTIVHSHTT--------------D------PESIVRE---ADIVIAAA  218 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~g-----atVtv~~~~t~--------------~------l~~~~~~---ADIVIsa~  218 (299)
                      |++|+|.|+++.+|+.++..|+++|     ++|+++.+...              |      +.+.++.   .|+||..+
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a   80 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVT   80 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECC
Confidence            5789999999999999999999999     89998875421              1      2345666   89999887


Q ss_pred             CC
Q 022295          219 GQ  220 (299)
Q Consensus       219 g~  220 (299)
                      |.
T Consensus        81 ~~   82 (364)
T 2v6g_A           81 WA   82 (364)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.77  E-value=0.023  Score=48.39  Aligned_cols=71  Identities=13%  Similarity=0.167  Sum_probs=50.7

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccCCcEEEEecCCCC---cC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVREADIVIAAAGQAM---MI  224 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g~p~---~i  224 (299)
                      ++.|+|+.+.+|+.++..|.+.|.+|++++++..                     ++.+.++++|+||.+++...   ++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~~~~~~~~   81 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDTA   81 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCChhhHHHHH
Confidence            6899994444699999999999999999976521                     23345678999999987432   11


Q ss_pred             C--CCccCCCeEEEEeec
Q 022295          225 K--GSWIKPGAAVIDVGT  240 (299)
Q Consensus       225 ~--~~~vk~gavVIDvg~  240 (299)
                      .  ...+ ++.+++|+..
T Consensus        82 ~~l~~~~-~~~~vi~~~~   98 (212)
T 1jay_A           82 RDLKNIL-REKIVVSPLV   98 (212)
T ss_dssp             HHTHHHH-TTSEEEECCC
T ss_pred             HHHHHHc-CCCEEEEcCC
Confidence            1  1223 4889999874

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.76  E-value=0.029  Score=52.35  Aligned_cols=56  Identities=18%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC------------------------CChhhhccCCcEEEEecC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT------------------------TDPESIVREADIVIAAAG  219 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t------------------------~~l~~~~~~ADIVIsa~g  219 (299)
                      ...+|+|||+|. ||.+++..|+..|.  +|++++...                        .+..+.+++||+||.++|
T Consensus         4 ~~~kI~ViGaG~-vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag   82 (326)
T 3pqe_A            4 HVNKVALIGAGF-VGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAG   82 (326)
T ss_dssp             SCCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecc
Confidence            357899999866 69999999988885  788886431                        012367899999999999


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      .|.
T Consensus        83 ~p~   85 (326)
T 3pqe_A           83 ANQ   85 (326)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            653

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=94.76  E-value=0.015  Score=52.07  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=34.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~   59 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK   59 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998765

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.74  E-value=0.041  Score=49.62  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=30.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .-.+++|+|.|+++.+|+.++..|+++|++|+++.+.
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   47 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   47 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence            3467999999999999999999999999999988764

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=94.74  E-value=0.071  Score=50.45  Aligned_cols=192  Identities=17%  Similarity=0.206  Sum_probs=114.7

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCC----cEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecC---------
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKV----PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDL---------   76 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~----P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l---------   76 (299)
                      .+|+-+.+.++=.+.|-+....+++.....    -.++.+-.  .|....-+ +=..++.++|-++.++.-         
T Consensus        25 hlLsi~Dls~~ei~~ll~~A~~~k~~~~~~~L~gK~va~lF~--epSTRTR~-SFE~A~~~LGg~~i~l~~~~ss~~~~~  101 (359)
T 3kzn_A           25 HFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFF--NPSMRTRT-SFELGAFQLGGHAVVLQPGKDAWPIEF  101 (359)
T ss_dssp             CBSCGGGSCHHHHHHHHHHHHHHHHCCCCCTTTTCEEEEEES--SCCHHHHH-HHHHHHHHTTCEEEEECHHHHSCCEEC
T ss_pred             cccchhhCCHHHHHHHHHHHHHHHhcCCCCcCCCCEEEEEec--CCCccHHH-HHHHHHHHcCCCEEecCCCCccccccc
Confidence            367777776555555666666676542111    24454432  34444444 457889999998876531         


Q ss_pred             CCC-----CCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCC-----HHHHHccCCccccCCCCCcccccccccCCCCCcc
Q 022295           77 PEQ-----VSEAELISKVHELNVMPDVHGILVQLPLPKHIN-----EEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLF  146 (299)
Q Consensus        77 ~~~-----~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~-----~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~  146 (299)
                      ...     -..+.+.+.++-+..  -+|+|.+-.. +...+     +...++.+.-.-+   +-..|.     |+   ..
T Consensus       102 ~~~s~~~~~k~Es~~DTarvls~--y~D~iviR~~-~~~~~~~~~~~~~~~~~~a~~~~---vPVIN~-----g~---~~  167 (359)
T 3kzn_A          102 NLGTVMDGDTEEHIAEVARVLGR--YVDLIGVRAF-PKFVDWSKDREDQVLKSFAKYSP---VPVINM-----ET---IT  167 (359)
T ss_dssp             SSSCCCCSSCCEEHHHHHHHHHH--HCSEEEEECC-CCSSCHHHHTTCHHHHHHHHHCS---SCEEES-----SS---SC
T ss_pred             cccccccCcccchHHHHHHHHhc--cCcEEEEEcc-ccccchhcchhhHHHHHHHHhCC---CcccCc-----cc---cc
Confidence            100     012335555555543  2778888632 22111     0122222211112   233453     32   34


Q ss_pred             ccCCHHH-HHHHHHhhCC-CcCCcEEEEEcC------CccchHHHHHHHhhCCCeEEEEcCC------------------
Q 022295          147 LPCTPKG-CLELLKRSGV-TIKGKRAVVVGR------SNIVGLPVSLLLLKADATVTIVHSH------------------  200 (299)
Q Consensus       147 ~PcT~~a-v~~ll~~~~~-~l~gk~vvViG~------s~~vG~pla~lL~~~gatVtv~~~~------------------  200 (299)
                      .||=+.+ ++.+.++.|. +++|++++++|.      +..|.+.+..++...|+.|+++...                  
T Consensus       168 HPtQaL~Dl~Ti~e~~G~~dl~g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~  247 (359)
T 3kzn_A          168 HPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVA  247 (359)
T ss_dssp             CHHHHHHHHHHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCccccCCeEEEEEeecCCccccchhhhhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHH
Confidence            7998888 6666677774 799999999875      3447889999999999999988642                  


Q ss_pred             --------CCChhhhccCCcEEEEec
Q 022295          201 --------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       201 --------t~~l~~~~~~ADIVIsa~  218 (299)
                              +.++.+.+++||+|.+-.
T Consensus       248 ~~g~~i~~~~d~~eav~~aDvvyt~r  273 (359)
T 3kzn_A          248 ESGGSLQVSHDIDSAYAGADVVYAKS  273 (359)
T ss_dssp             HHSCEEEEECCHHHHHTTCSEEEEEC
T ss_pred             hhCCCcccccCHHHHhcCCeEEEEEE
Confidence                    346778999999999654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=94.73  E-value=0.032  Score=49.56  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=34.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            46899999999999889999999999999999998654

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=94.71  E-value=0.035  Score=51.54  Aligned_cols=55  Identities=16%  Similarity=0.347  Sum_probs=42.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCC-----------------------CChhhhccCCcEEEEecCCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHT-----------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t-----------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      .+|+|+|++|.||.+++..|+.+|  .+|.+++...                       .++.+.++.||+||.++|.|.
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~~   88 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPR   88 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcCC
Confidence            589999976678999999998888  5788776321                       134567899999999998654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.70  E-value=0.033  Score=49.47  Aligned_cols=37  Identities=16%  Similarity=0.225  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            5789999999999889999999999999999998654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=94.70  E-value=0.015  Score=50.59  Aligned_cols=37  Identities=30%  Similarity=0.331  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~   38 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATS   38 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999988765

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=94.68  E-value=0.06  Score=48.68  Aligned_cols=33  Identities=30%  Similarity=0.310  Sum_probs=29.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      +|+|+|.|+++.+|+.++..|+++|++|+++.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r   41 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVR   41 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEc
Confidence            789999999999999999999999999987543

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=94.67  E-value=0.014  Score=51.54  Aligned_cols=37  Identities=41%  Similarity=0.508  Sum_probs=33.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (260)
T 2qq5_A            2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRH   38 (260)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999999999999999999999988764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=94.67  E-value=0.057  Score=48.75  Aligned_cols=53  Identities=23%  Similarity=0.345  Sum_probs=40.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---------------------hhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---------------------PESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---------------------l~~~~~~ADIVIsa~g~  220 (299)
                      .+|+|.|+++.+|+.++..|+++|++|+++.+....                     +.+.++..|+||..+|.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            479999999999999999999999999998765321                     23456778999977774

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=94.66  E-value=0.052  Score=51.12  Aligned_cols=58  Identities=16%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCC-------eEEEEcCC--------------------------CCChhhhccCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADA-------TVTIVHSH--------------------------TTDPESIVREA  211 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~ga-------tVtv~~~~--------------------------t~~l~~~~~~A  211 (299)
                      .+..||+|+|+++-+|.+++.+|+....       .+.+.+..                          +.+..+.+++|
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~a  101 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGV  101 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTC
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCC
Confidence            4567999999866679999998876532       45555532                          23566789999


Q ss_pred             cEEEEecCCCC
Q 022295          212 DIVIAAAGQAM  222 (299)
Q Consensus       212 DIVIsa~g~p~  222 (299)
                      |+||.+.|.|.
T Consensus       102 dvVvi~aG~pr  112 (345)
T 4h7p_A          102 AIAIMCGAFPR  112 (345)
T ss_dssp             SEEEECCCCCC
T ss_pred             CEEEECCCCCC
Confidence            99999988653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=94.65  E-value=0.013  Score=51.68  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=33.5

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   40 (250)
T 3nyw_A            3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARS   40 (250)
T ss_dssp             --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            35789999999999889999999999999999998765

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=94.65  E-value=0.018  Score=51.05  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEE-cCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIV-HSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~-~~~  200 (299)
                      +||+++|.|+++-+|+.++..|+++|++|.++ .++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~   38 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARS   38 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            68999999999889999999999999999886 443

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.65  E-value=0.011  Score=56.67  Aligned_cols=95  Identities=18%  Similarity=0.246  Sum_probs=61.4

Q ss_pred             ccCCHHHHHHHHHhh--CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh--------------------
Q 022295          147 LPCTPKGCLELLKRS--GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP--------------------  204 (299)
Q Consensus       147 ~PcT~~av~~ll~~~--~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l--------------------  204 (299)
                      +||.....+..|...  .---.|++|+|.|+++.+|..+++++...||+|+++.+....+                    
T Consensus       199 l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~  278 (447)
T 4a0s_A          199 SPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGIT  278 (447)
T ss_dssp             SHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCC
T ss_pred             hHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeccccccc
Confidence            344333344445321  2234799999999966689999999999999987775431100                    


Q ss_pred             -----------------h----hhc-cCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          205 -----------------E----SIV-READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       205 -----------------~----~~~-~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                                       .    +.+ ...|+||.++|.+.+ -.-.+++++..++.+|..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~  338 (447)
T 4a0s_A          279 DDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSS  338 (447)
T ss_dssp             TTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHHHHHHHHHSCTTCEEEESCCT
T ss_pred             ccccccccccchhhhHHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCEEEEEecC
Confidence                             0    111 358999999997532 122467888888888854

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=94.64  E-value=0.047  Score=49.12  Aligned_cols=53  Identities=17%  Similarity=0.290  Sum_probs=41.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------C------hhhhcc--CCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------D------PESIVR--EADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~------l~~~~~--~ADIVIsa~g~  220 (299)
                      ++|+|.|+++.+|+.++..|+++|++|+++.+...               |      +.+.++  ..|+||..+|.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~   77 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAAD   77 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            68999999999999999999999999998865321               1      224455  78999987774

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.64  E-value=0.02  Score=52.59  Aligned_cols=37  Identities=30%  Similarity=0.419  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+|+|.|+|+-+|+.++..|+++|++|.++.++
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~   41 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIR   41 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999999889999999999999999998765

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=94.64  E-value=0.029  Score=50.02  Aligned_cols=54  Identities=15%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhC--CCeEEEEcCCCC-------------C------hhhhcc--CCcEEEEecCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKA--DATVTIVHSHTT-------------D------PESIVR--EADIVIAAAGQ  220 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~--gatVtv~~~~t~-------------~------l~~~~~--~ADIVIsa~g~  220 (299)
                      +++|+|.|+++.+|+.++..|+++  |++|+++.++..             |      +.+.++  ..|+||..+|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   78 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAAL   78 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            578999999999999999999998  889998876432             1      234455  78999988774

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=94.64  E-value=0.012  Score=52.99  Aligned_cols=37  Identities=30%  Similarity=0.492  Sum_probs=33.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~   41 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARN   41 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999999889999999999999999998764

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=94.63  E-value=0.028  Score=48.80  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~   39 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.61  E-value=0.02  Score=49.33  Aligned_cols=53  Identities=13%  Similarity=0.258  Sum_probs=41.3

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------C---hhh-hccCCcEEEEecCCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------D---PES-IVREADIVIAAAGQAM  222 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------~---l~~-~~~~ADIVIsa~g~p~  222 (299)
                      +|+|+|.|. +|+.++..|.++|..|+++.++..                   +   +.+ .+.+||+||.+++...
T Consensus         2 ~iiIiG~G~-~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C            2 KVIIIGGET-TAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE   77 (218)
T ss_dssp             CEEEECCHH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence            689999866 599999999999999999975421                   1   223 2678999999998653

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.61  E-value=0.036  Score=49.25  Aligned_cols=38  Identities=11%  Similarity=0.232  Sum_probs=34.8

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~   64 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   64 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence            45899999999999999999999999999999998765

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=94.59  E-value=0.046  Score=49.57  Aligned_cols=54  Identities=22%  Similarity=0.386  Sum_probs=43.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhC--CCeEEEEcCCCC--------------------C------hhhhccCCcEEEEecC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA--DATVTIVHSHTT--------------------D------PESIVREADIVIAAAG  219 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~--gatVtv~~~~t~--------------------~------l~~~~~~ADIVIsa~g  219 (299)
                      ++|+|.|+++.+|+.++..|+++  |++|+++.+...                    |      +.+.++.+|+||..+|
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   84 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA   84 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence            68999999999999999999998  889998865321                    1      2356778899998887


Q ss_pred             CC
Q 022295          220 QA  221 (299)
Q Consensus       220 ~p  221 (299)
                      ..
T Consensus        85 ~~   86 (348)
T 1oc2_A           85 ES   86 (348)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.59  E-value=0.048  Score=53.06  Aligned_cols=68  Identities=21%  Similarity=0.340  Sum_probs=50.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------------------------------CChhhhccCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------------------------TDPESIVREA  211 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------------------------~~l~~~~~~A  211 (299)
                      ++|.|||.|.+ |.++|..|++.|..|++++++.                                    .++ +.+++|
T Consensus        38 ~kV~VIGaG~M-G~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           38 SSVGVLGLGTM-GRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            68999998775 9999999999999999997542                                    122 346789


Q ss_pred             cEEEEecCCCC-----cCC--CCccCCCeEEEE
Q 022295          212 DIVIAAAGQAM-----MIK--GSWIKPGAAVID  237 (299)
Q Consensus       212 DIVIsa~g~p~-----~i~--~~~vk~gavVID  237 (299)
                      |+||.|++..-     ++.  ...+++++++++
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence            99999997431     111  134678999887

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=94.58  E-value=0.033  Score=48.98  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      -||+++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   56 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRE   56 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            379999999999899999999999999999998764

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=94.58  E-value=0.039  Score=48.05  Aligned_cols=37  Identities=14%  Similarity=0.109  Sum_probs=33.1

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   41 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            5789999999999999999999999999999987754

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.58  E-value=0.014  Score=52.11  Aligned_cols=37  Identities=27%  Similarity=0.428  Sum_probs=33.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRS   39 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d1a4ia1	170	c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehy	8e-58
d1b0aa1	166	c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehy	3e-50
d1edza2	146	c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/	1e-40
d1edza1	171	c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehy	4e-37
d1b0aa2	121	c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/	2e-34
d1a4ia2	125	c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/	2e-34

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  181 bits (460), Expect = 8e-58
 Identities = 92/170 (54%), Positives = 118/170 (69%)

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
              +N G+LA    +  F+PCTPKGCLEL+K +GV I G+ AVVVGRS IVG P+  LLL
Sbjct: 1   LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLL 60

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
             +ATVT  HS T   +  V + DI++ A GQ  M+KG WIKPGA VID G N V D  K
Sbjct: 61  WNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKK 120

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
            +G ++VGDV + EA + A  +TPVPGGVGPMTVAML+++T++ AKR +E
Sbjct: 121 PNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE 170

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

 Score =  162 bits (410), Expect = 3e-50
 Identities = 79/167 (47%), Positives = 101/167 (60%), Gaps = 8/167 (4%)

Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
           FHP N+G+L    R P   PCTP+G + LL+R  +   G  AVV+G SNIVG P+S+ LL
Sbjct: 1   FHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 58

Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
            A  T T+ H  T +    V  AD++I A G+   I G WIK GA VIDVG N +++   
Sbjct: 59  LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG-- 116

Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
               ++VGDV F +A K A  +TPVPGGVGPMTVA L+ NTL     
Sbjct: 117 ----KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVE 159

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  136 bits (344), Expect = 1e-40
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
              I    VA+T  +EI   V    + + G+ P L   +      ++ Y +  +K    +
Sbjct: 3   GRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESM 62

Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
           G +     + ++     L   + + N    V+GI+V  P+  +  ++ +   +  EKDV+
Sbjct: 63  GFRYDLRVIEDKD---FLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVE 119

Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKGCL 155
           G + +    L                 +
Sbjct: 120 GLNHVYYQNLYH--NVRYLDKENRLKSI 145

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  127 bits (321), Expect = 4e-37
 Identities = 42/185 (22%), Positives = 64/185 (34%), Gaps = 53/185 (28%)

Query: 148 PCTPKGCLELLKR---------SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH 198
           PCTP   +++L+           G  + GK+ +V+ RS IVG P++ LL    ATV  V 
Sbjct: 1   PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVD 60

Query: 199 SHTTD-------------------------PESIVREADIVIAAAGQA-MMIKGSWIKPG 232
            +                             +    ++D+VI             +IK G
Sbjct: 61  VNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEG 120

Query: 233 AAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDG 292
           A  I+                        +  + A    P+ G V   T+AMLLRN L  
Sbjct: 121 AVCINFACT---------------KNFSDDVKEKASLYVPMTGKV---TIAMLLRNMLRL 162

Query: 293 AKRVI 297
            + V 
Sbjct: 163 VRNVE 167

>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

 Score =  119 bits (300), Expect = 2e-34
 Identities = 64/120 (53%), Positives = 78/120 (65%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
           A IIDGK +AQ +RSE+A++V+       + PGLAVV+VG    SQ YV+ KRKAC EVG
Sbjct: 2   AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 61

Query: 69  IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
             S   DLPE  SEAEL+  +  LN    + GILVQLPLP  I+  KVL  I  +KDVDG
Sbjct: 62  FVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 121

>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 2e-34
 Identities = 53/123 (43%), Positives = 76/123 (61%), Gaps = 3/123 (2%)

Query: 9   ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
           A I++GK ++  IR+ +  +V  L E+  G  P LA++ VG R DS  Y+++K KA  E+
Sbjct: 3   AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 62

Query: 68  GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH--INEEKVLGEISLEKD 125
           GIK+  I LP   +E+E++  +  LN    VHG LVQLPL     IN E+V+  I+ EKD
Sbjct: 63  GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 122

Query: 126 VDG 128
           VDG
Sbjct: 123 VDG 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1edza2	146	Tetrahydrofolate dehydrogenase/cyclohydrolase {Bak	100.0
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1b0aa2	121	Tetrahydrofolate dehydrogenase/cyclohydrolase {Esc	100.0
d1a4ia2	125	Tetrahydrofolate dehydrogenase/cyclohydrolase {Hum	100.0
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.64
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	99.6
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.56
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.55
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.49
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	99.25
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.16
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.13
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.69
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.67
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.46
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.29
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.18
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.14
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.07
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.03
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.02
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.89
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.89
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.84
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.84
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.82
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.71
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.67
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.52
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.49
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.46
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.45
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.35
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	97.32
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.31
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.23
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.21
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.08
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.07
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.07
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.02
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.02
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.01
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.01
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.99
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.98
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.95
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.94
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.94
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.93
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.89
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.89
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.87
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.86
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.86
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.84
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.82
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.8
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.8
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.8
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.78
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.77
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.77
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.74
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.74
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.73
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.71
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.71
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.7
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.64
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.6
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.6
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.59
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.59
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.58
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.56
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.56
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.55
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.54
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.53
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.52
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.5
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.48
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.47
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.46
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.46
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.44
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.44
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.44
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.44
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.43
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.43
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.4
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.39
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.37
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.37
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.37
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.36
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.36
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.36
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.32
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.27
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.26
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.24
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.23
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.21
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.2
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.19
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.17
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.15
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.15
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.12
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.12
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.1
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.1
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	96.08
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.08
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.06
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.04
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.02
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.99
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.98
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.98
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.93
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.93
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.92
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.91
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.91
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.87
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.86
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.85
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.83
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.81
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.81
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.79
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.79
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.79
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	95.78
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.78
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.77
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	95.76
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.76
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.71
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	95.7
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.68
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.67
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.65
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.64
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.64
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.62
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.59
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.57
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.56
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.53
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.52
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.38
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.36
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.36
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	95.35
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.33
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	95.32
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.3
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.26
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.25
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.23
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	95.23
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	95.22
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.21
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.12
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.09
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.07
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	95.06
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.0
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	95.0
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.97
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	94.91
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	94.87
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.84
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.81
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	94.8
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.8
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	94.77
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.73
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.73
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.66
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.59
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.51
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.49
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.4
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	94.39
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.34
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.33
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.3
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	94.25
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.23
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	94.21
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.21
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.17
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.15
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.12
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.1
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.05
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.03
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	94.01
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.01
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.0
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	93.97
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.93
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.9
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	93.89
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.88
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.77
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.75
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	93.73
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.6
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.38
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.29
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	93.26
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	93.21
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.2
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.12
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.08
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	93.04
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	93.03
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.82
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.75
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.71
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.69
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	92.68
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.68
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.68
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	92.67
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	92.67
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.63
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.62
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.52
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.48
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.32
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	92.32
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	92.19
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.18
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	92.11
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.08
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.64
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.31
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.31
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.13
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.12
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	91.0
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	90.99
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	90.94
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	90.79
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	90.75
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	90.67
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.61
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.56
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.55
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	90.44
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	90.38
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.37
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.34
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.31
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	89.86
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.85
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.83
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	89.82
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	89.8
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	89.73
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.67
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	89.63
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.62
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	89.35
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.33
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.1
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	88.84
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	88.73
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	88.62
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	88.29
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	88.18
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	88.17
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	88.09
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	88.02
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	87.93
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	87.02
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	87.02
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	86.75
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	86.73
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	86.68
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.64
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.62
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	86.62
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	86.57
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	86.37
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	86.21
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.6
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	84.8
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	84.56
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	84.5
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	84.38
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	84.08
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	84.03
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.8
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	83.44
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.21
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	83.1
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.61
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	82.18
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	82.18
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	82.12
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	82.12
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	81.99
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	81.52
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	80.97
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	80.63
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	80.33
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	80.32
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	80.1
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	80.1

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-58  Score=393.30  Aligned_cols=162  Identities=48%  Similarity=0.814  Sum_probs=157.1

Q ss_pred             CCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhc
Q 022295          129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIV  208 (299)
Q Consensus       129 ~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~  208 (299)
                      |||.|+|+|+.|  .++|+||||+||+++|++|+++++||+|+|||||++||+|++++|.++|||||+||++|+++.+++
T Consensus         1 fhp~N~G~l~~~--~~~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~   78 (166)
T d1b0aa1           1 FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV   78 (166)
T ss_dssp             CSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH
T ss_pred             CCchhHHHHhCC--CCCCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHH
Confidence            799999999987  688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHH
Q 022295          209 READIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRN  288 (299)
Q Consensus       209 ~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n  288 (299)
                      ++|||||+|+|+|++++++|+|+|++|||+|+++.+++      ++|||+||+++.++++++|||||||||||++|||+|
T Consensus        79 ~~ADivI~a~G~p~~i~~~~vk~g~vvIDvGi~~~~~~------~~~Gdvd~~~v~~~a~~~TPvPGGVGP~Tva~L~~N  152 (166)
T d1b0aa1          79 ENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG------KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIEN  152 (166)
T ss_dssp             HHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEECTTS------CEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHH
T ss_pred             hhhhHhhhhccCcccccccccCCCcEEEecCceecCCC------CEEeccccHhHHhheeEeCCCCCcccHHHHHHHHHH
Confidence            99999999999999999999999999999999987663      799999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 022295          289 TLDGAKRVIE  298 (299)
Q Consensus       289 ~v~a~~~~~~  298 (299)
                      +++|+++|..
T Consensus       153 ~v~a~~~~~~  162 (166)
T d1b0aa1         153 TLQACVEYHD  162 (166)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHhC
Confidence            9999999874

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-58  Score=394.85  Aligned_cols=170  Identities=54%  Similarity=0.892  Sum_probs=156.1

Q ss_pred             CCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhc
Q 022295          129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIV  208 (299)
Q Consensus       129 ~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~  208 (299)
                      +|++|+|+|+.|+.+++|+||||+||+++|++|+++++||+|+|||||+.||||++++|+++||||++||++|+++.+++
T Consensus         1 l~~~N~G~l~~g~~~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~~   80 (170)
T d1a4ia1           1 LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV   80 (170)
T ss_dssp             CSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH
T ss_pred             CCccchhhHhcCCCCCCCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHHH
Confidence            68999999999865689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHH
Q 022295          209 READIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRN  288 (299)
Q Consensus       209 ~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n  288 (299)
                      ++|||||+|+|+|++++++|+|+|++|||+|+++.+++..++|++++||+||+++.++++++|||||||||||++|||+|
T Consensus        81 ~~aDivi~a~G~~~~i~~~~vk~g~iviDvgi~~~~~~~~~~~~~~~gdvd~~~v~~~a~~~TPvPGGVGp~Tva~L~~N  160 (170)
T d1a4ia1          81 NKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQS  160 (170)
T ss_dssp             TTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC----------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHHH
T ss_pred             hhccchhhccccccccccccccCCCeEeccCcccccccccCCCCEEecccchHhhhhhceEeCCCCCchhHHHHHHHHHH
Confidence            99999999999999999999999999999999998765555566899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 022295          289 TLDGAKRVIE  298 (299)
Q Consensus       289 ~v~a~~~~~~  298 (299)
                      +++++++|++
T Consensus       161 ~v~a~~r~l~  170 (170)
T d1a4ia1         161 TVESAKRFLE  170 (170)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999999974

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-44  Score=301.08  Aligned_cols=142  Identities=18%  Similarity=0.202  Sum_probs=133.6

Q ss_pred             ceeeccHHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         9 ~~il~gk~~a~~i~~~~~~~v~~l~~~~-~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      +++|||+++|++|++++++++++|+++. |++|+|++|+||+||+|.+|+++|.|+|+++||+++.   ++..+++|+++
T Consensus         3 gkiidG~~iA~~i~~~l~~~v~~l~~~~~g~~P~Lavilvg~d~aS~~Yv~~k~k~a~~~Gi~~~l---~~~~~~~~l~~   79 (146)
T d1edza2           3 GRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDL---RVIEDKDFLEE   79 (146)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEE---EECSSGGGHHH
T ss_pred             CeeccHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCcccc---CccchHHHHHH
Confidence            5799999999999999999999998765 7999999999999999999999999999999999764   44568899999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHH
Q 022295           88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCL  155 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~  155 (299)
                      .|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|  ..++.||||+||+
T Consensus        80 ~I~~LN~D~~V~GIlvQlPLP~~i~~~~i~~~I~p~KDVDGl~p~N~G~L~~~--~~~l~P~t~~~~i  145 (146)
T d1edza2          80 AIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHN--VRYLDKENRLKSI  145 (146)
T ss_dssp             HHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTTTBTTCCSHHHHHHHHTT--CCBSSSSSCSBCC
T ss_pred             HHHHHhcchhhhhhhhcCCCCcccCHHHHHHhcCCCCCcCCCChHhHHHHHcC--CCCCCCCCccCcc
Confidence            99999999999999999999999999999999999999999999999999987  7789999998864

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-43  Score=299.59  Aligned_cols=132  Identities=31%  Similarity=0.457  Sum_probs=122.3

Q ss_pred             cCCHHHHHHHHHhhCC---------CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---------------
Q 022295          148 PCTPKGCLELLKRSGV---------TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---------------  203 (299)
Q Consensus       148 PcT~~av~~ll~~~~~---------~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---------------  203 (299)
                      ||||+||++||++|++         +++||+|+|||||++||+|+|.||+++|||||+||+++.+               
T Consensus         1 PcTp~gv~~LL~~y~I~~~~~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1edza1           1 PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHV   80 (171)
T ss_dssp             CHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEE
T ss_pred             CCcHHHHHHHHHHcCcccccccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeecc
Confidence            9999999999999998         9999999999999999999999999999999999987532               


Q ss_pred             ----------hhhhccCCcEEEEecCCCCc-CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceecc
Q 022295          204 ----------PESIVREADIVIAAAGQAMM-IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTP  272 (299)
Q Consensus       204 ----------l~~~~~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTP  272 (299)
                                +++++++|||||+|+|.|++ ++.||+|+|++|||+|+++.               +++++.+++++|||
T Consensus        81 ~~~~~~~~~~lk~~~~~aDIvIsavG~p~~~i~~d~ik~GavvIDvGi~~~---------------~~~~v~~~a~~iTP  145 (171)
T d1edza1          81 EDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKN---------------FSDDVKEKASLYVP  145 (171)
T ss_dssp             EEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCTTEEEEECSSSCC---------------BCGGGGTTEEEEES
T ss_pred             ccccccchhHHhhccccCCEEEEccCCCccccChhhcccCceEeecccccc---------------cccchhheeeEEcC
Confidence                      67788899999999999998 99999999999999999753               24678999999999


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHh
Q 022295          273 VPGGVGPMTVAMLLRNTLDGAKRVI  297 (299)
Q Consensus       273 VPGGVGp~T~a~L~~n~v~a~~~~~  297 (299)
                      |||||   |++|||+|+++++|+|.
T Consensus       146 VPGGV---TvamLl~N~v~a~~~~~  167 (171)
T d1edza1         146 MTGKV---TIAMLLRNMLRLVRNVE  167 (171)
T ss_dssp             CCHHH---HHHHHHHHHHHHHHHHH
T ss_pred             CCCHH---HHHHHHHHHHHHHHHHH
Confidence            99997   99999999999999875

>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.2e-38  Score=256.53  Aligned_cols=120  Identities=53%  Similarity=0.756  Sum_probs=117.8

Q ss_pred             ceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHH
Q 022295            9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISK   88 (299)
Q Consensus         9 ~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~   88 (299)
                      |+|||||++|++++++++++++.++++.+++|+|++|+||+||+|..|+++|.|+|+++||+++.+.||++++|+||++.
T Consensus         2 A~iLdGk~vA~~i~~~l~~~i~~~~~~~~~~P~LavI~vg~d~aS~~Yv~~k~k~a~~lGi~~~~~~l~~~~t~~~l~~~   81 (121)
T d1b0aa2           2 AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLEL   81 (121)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHH
T ss_pred             CEeccHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEeCCChhHHHHHHHHHHHHHhhccceeeeeccccccHHHHHHH
Confidence            78999999999999999999999998877899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCC
Q 022295           89 VHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG  128 (299)
Q Consensus        89 i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg  128 (299)
                      |++||+|++|||||||+|||+|+|+++++++|+|+|||||
T Consensus        82 I~~lN~d~~v~GIlvqlPLP~~i~~~~i~~~I~p~KDVDG  121 (121)
T d1b0aa2          82 IDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG  121 (121)
T ss_dssp             HHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTC
T ss_pred             HHHHhCCCchhhhhhcCCCCCCcCHHHHHhccCcCcCCCC
Confidence            9999999999999999999999999999999999999998

>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-37  Score=253.53  Aligned_cols=120  Identities=44%  Similarity=0.712  Sum_probs=117.0

Q ss_pred             ceeeccHHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295            9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS   87 (299)
Q Consensus         9 ~~il~gk~~a~~i~~~~~~~v~~l~~~~-~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~   87 (299)
                      |+|||||++|++|+++++++++.|+++. |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus         3 a~iLdGk~vA~~i~~~lk~~v~~l~~~~~g~~P~LavIlvg~d~aS~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~el~~   82 (125)
T d1a4ia2           3 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMK   82 (125)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHH
T ss_pred             CEEeehHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCChhHHHHHHHHHHHHHhccceEEEEecCcchhHHHHHH
Confidence            7899999999999999999999998875 789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCceEEEEeCCCCCC--CCHHHHHccCCccccCCC
Q 022295           88 KVHELNVMPDVHGILVQLPLPKH--INEEKVLGEISLEKDVDG  128 (299)
Q Consensus        88 ~i~~ln~d~~v~GIlvq~Plp~~--i~~~~i~~~i~p~KDVDg  128 (299)
                      .|++||+|++|||||||+|||+|  +|+++++++|+|.|||||
T Consensus        83 ~I~~lN~d~~V~GIlvqlPLP~~~~~~~~~i~~~I~p~KDVDG  125 (125)
T d1a4ia2          83 YITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDG  125 (125)
T ss_dssp             HHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTC
T ss_pred             HHHHHhccCCcceEEEecCCCCCCCcCHHHHHhcCCCCcCCCC
Confidence            99999999999999999999987  999999999999999998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.4e-15  Score=128.19  Aligned_cols=129  Identities=25%  Similarity=0.284  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------------Chh-hhccCC
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------------DPE-SIVREA  211 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------------~l~-~~~~~A  211 (299)
                      ..|+++.|++.+++++||+|+|+|+|++ +|+++..|.+.|++|++++|+..                  ++. ....++
T Consensus         2 g~Gf~~~l~~~~~~~~~k~vlIlGaGGa-arai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T d1nyta1           2 GVGLLSDLERLSFIRPGLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEF   80 (170)
T ss_dssp             HHHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCC
T ss_pred             HhHHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccccccccccccc
Confidence            4689999999999999999999999997 99999999999999999998631                  111 124578


Q ss_pred             cEEEEecCC---CC--cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHH
Q 022295          212 DIVIAAAGQ---AM--MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLL  286 (299)
Q Consensus       212 DIVIsa~g~---p~--~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~  286 (299)
                      |+||++|+.   +.  .++.+.++++++|+|+.|+|.+++             |-..++..++-+ +-+|.+     ||+
T Consensus        81 dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T~-------------ll~~A~~~G~~~-~i~Gl~-----MLi  141 (170)
T d1nyta1          81 DLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTP-------------FLAWCEQRGSKR-NADGLG-----MLV  141 (170)
T ss_dssp             SEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCH-------------HHHHHHHTTCCE-EECTHH-----HHH
T ss_pred             ceeecccccCcccCCCCCcHHHhccCcEEEEeecCCCCCH-------------HHHHHHHcCCCc-ccCCHH-----HHH
Confidence            999988852   22  356678999999999999998763             566677777532 334566     999


Q ss_pred             HHHHHHHHHHhcC
Q 022295          287 RNTLDGAKRVIEL  299 (299)
Q Consensus       287 ~n~v~a~~~~~~~  299 (299)
                      +|.+.+++.|+|.
T Consensus       142 ~Qa~~~f~lwtG~  154 (170)
T d1nyta1         142 AQAAHAFLLWHGV  154 (170)
T ss_dssp             HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999873

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.7e-15  Score=127.69  Aligned_cols=128  Identities=20%  Similarity=0.260  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCCCh-------------------------
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTTDP-------------------------  204 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~~l-------------------------  204 (299)
                      ..|+++.|++.+++++||+|+|+|+|++ ||+++..|...|+ ++++++|+..++                         
T Consensus         2 ~~Gf~~~l~~~~~~l~~k~vlIlGaGGa-arai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (182)
T d1vi2a1           2 GTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD   80 (182)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC
T ss_pred             HHHHHHHHHHcCCCcCCCEEEEECCcHH-HHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc
Confidence            4789999999999999999999999997 9999999999997 799999864322                         


Q ss_pred             ----hhhccCCcEEEEecCC---CC----c-CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceecc
Q 022295          205 ----ESIVREADIVIAAAGQ---AM----M-IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTP  272 (299)
Q Consensus       205 ----~~~~~~ADIVIsa~g~---p~----~-i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTP  272 (299)
                          .+.+..+|+||++|+.   |.    + .+.+.++++.+|+|+.|+|.+++             |...++..++  +
T Consensus        81 ~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~-------------ll~~a~~~g~--~  145 (182)
T d1vi2a1          81 QQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTK-------------LLQQAQQAGC--K  145 (182)
T ss_dssp             HHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCH-------------HHHHHHTTTC--E
T ss_pred             ccchhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCccccH-------------HHHHHHHCcC--e
Confidence                2335789999999862   21    1 34556899999999999998763             6677777887  4


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhcC
Q 022295          273 VPGGVGPMTVAMLLRNTLDGAKRVIEL  299 (299)
Q Consensus       273 VPGGVGp~T~a~L~~n~v~a~~~~~~~  299 (299)
                      +-.|.+     ||++|.+.+++.|++.
T Consensus       146 ~i~Gl~-----Mli~Qa~~~f~iwtg~  167 (182)
T d1vi2a1         146 TIDGYG-----MLLWQGAEQFTLWTGK  167 (182)
T ss_dssp             EECHHH-----HHHHHHHHHHHHHHSS
T ss_pred             EeccHH-----HHHHHHHHHHHHHhCC
Confidence            555666     9999999999999973

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=6.9e-15  Score=124.55  Aligned_cols=126  Identities=19%  Similarity=0.225  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------------------Chhh
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------------------DPES  206 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------------------~l~~  206 (299)
                      ..|+++.|++++.+++||+|+|+|+|++ +|+++..|.+.| .|+|.+|+..                        ++..
T Consensus         2 ~~G~~~~l~~~~~~~~~k~vlIlGaGG~-arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~   79 (177)
T d1nvta1           2 GIGARMALEEEIGRVKDKNIVIYGAGGA-ARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDV   79 (177)
T ss_dssp             HHHHHHHHHHHHCCCCSCEEEEECCSHH-HHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTC
T ss_pred             HHHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhh
Confidence            4689999999999999999999999997 999999998776 9999998621                        2334


Q ss_pred             hccCCcEEEEecCCC---C-----cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCcc
Q 022295          207 IVREADIVIAAAGQA---M-----MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVG  278 (299)
Q Consensus       207 ~~~~ADIVIsa~g~p---~-----~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVG  278 (299)
                      ....+|++|++|+..   .     .++.+.++++.+|+|+.|+|.+++             |-..++..++  ++-+|.+
T Consensus        80 ~~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~-------------l~~~a~~~G~--~~i~Gl~  144 (177)
T d1nvta1          80 DLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETV-------------LLKEAKKVNA--KTINGLG  144 (177)
T ss_dssp             CCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCH-------------HHHHHHTTTC--EEECTHH
T ss_pred             ccchhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHhHH-------------HHHHHHHCCC--cccCCHH
Confidence            567899999988742   2     256678899999999999998763             5567777777  4445665


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 022295          279 PMTVAMLLRNTLDGAKRVIE  298 (299)
Q Consensus       279 p~T~a~L~~n~v~a~~~~~~  298 (299)
                           ||++|.+.+++.|+|
T Consensus       145 -----MLv~Qa~~qf~lwtg  159 (177)
T d1nvta1         145 -----MLIYQGAVAFKIWTG  159 (177)
T ss_dssp             -----HHHHHHHHHHHHHHS
T ss_pred             -----HHHHHHHHHHHHHHC
Confidence                 999999999999986

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.55  E-value=3.9e-15  Score=125.32  Aligned_cols=127  Identities=13%  Similarity=0.189  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCCC---hh----------hhccCCcEEEE
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTTD---PE----------SIVREADIVIA  216 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~~---l~----------~~~~~ADIVIs  216 (299)
                      ..|+.++|++++++ ++|+|+|+|+|++ +|+++..|.+.|+ +|+|++|+...   +.          ....++|+||+
T Consensus         2 ~~G~~~~l~~~~~~-~~~~vlIlGaGGa-arai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~~~~DliIN   79 (167)
T d1npya1           2 YIAIVKLIEKYHLN-KNAKVIVHGSGGM-AKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVN   79 (167)
T ss_dssp             HHHHHHHHHHTTCC-TTSCEEEECSSTT-HHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEEE
T ss_pred             hHHHHHHHHHcCCC-CCCeEEEECCCHH-HHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccccchhhhee
Confidence            46899999999998 8999999999997 9999999999997 79999886321   10          12467899998


Q ss_pred             ecCC---CCc------CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHH
Q 022295          217 AAGQ---AMM------IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLR  287 (299)
Q Consensus       217 a~g~---p~~------i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~  287 (299)
                      ||+.   |+.      ++..+++++++|+|+.|+|.+++             |-..++..|+  ++-+|.+     ||++
T Consensus        80 aTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T~-------------ll~~A~~~G~--~~i~Gl~-----Mli~  139 (167)
T d1npya1          80 VTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETP-------------FIRYAQARGK--QTISGAA-----VIVL  139 (167)
T ss_dssp             CSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCH-------------HHHHHHHTTC--EEECHHH-----HHHH
T ss_pred             ccccCCccccccccccccHhhcCCcceEEEEeeccCCCH-------------HHHHHHHCCC--eEEECHH-----HHHH
Confidence            8862   321      44556788999999999998763             5567777787  4556676     9999


Q ss_pred             HHHHHHHHHhcC
Q 022295          288 NTLDGAKRVIEL  299 (299)
Q Consensus       288 n~v~a~~~~~~~  299 (299)
                      |.+.+++.|++.
T Consensus       140 Qa~~~f~lwtg~  151 (167)
T d1npya1         140 QAVEQFELYTHQ  151 (167)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCC
Confidence            999999999863

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.49  E-value=1.1e-14  Score=123.07  Aligned_cols=129  Identities=21%  Similarity=0.293  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChh-------------------hhccCC
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPE-------------------SIVREA  211 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~-------------------~~~~~A  211 (299)
                      ..|+++.|++++++++||+|+|+|+|++ +|+++..|.+.+..|+|++|+....+                   ..+.++
T Consensus         2 ~~Gf~~~l~~~~~~~~~k~vlIlGaGGa-arai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1p77a1           2 GIGLVTDLQRLNWLRPNQHVLILGAGGA-TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTY   80 (171)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCC
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhcccccccc
Confidence            4689999999999999999999999997 99999999988889999998732111                   125689


Q ss_pred             cEEEEecCC--CC---cCCCCccCCCeEEEEeec-cCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHH
Q 022295          212 DIVIAAAGQ--AM---MIKGSWIKPGAAVIDVGT-NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAML  285 (299)
Q Consensus       212 DIVIsa~g~--p~---~i~~~~vk~gavVIDvg~-~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L  285 (299)
                      |+||++|+.  ++   ....+.++++.+++|+.| +|.+++             |-..++..++-+ +.+|.+     ||
T Consensus        81 diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T~-------------~l~~A~~~g~~~-v~~Gl~-----Ml  141 (171)
T d1p77a1          81 DLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTP-------------FIALCKSLGLTN-VSDGFG-----ML  141 (171)
T ss_dssp             SEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCH-------------HHHHHHHTTCCC-EECSHH-----HH
T ss_pred             ceeeecccccccccccchhhhhhcccceeeeeeccCcccHH-------------HHHHHHHcCCCc-ccCcHH-----HH
Confidence            999998873  22   234455788999999999 566552             567777777633 656777     99


Q ss_pred             HHHHHHHHHHHhcC
Q 022295          286 LRNTLDGAKRVIEL  299 (299)
Q Consensus       286 ~~n~v~a~~~~~~~  299 (299)
                      ++|.+.+++.|+|.
T Consensus       142 ~~Qa~~~f~iwtg~  155 (171)
T d1p77a1         142 VAQAAHSFHLWRGV  155 (171)
T ss_dssp             HHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHCC
Confidence            99999999999973

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.25  E-value=4.6e-12  Score=105.76  Aligned_cols=95  Identities=18%  Similarity=0.257  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-----------------CChhhhccCC
Q 022295          150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-----------------TDPESIVREA  211 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-----------------~~l~~~~~~A  211 (299)
                      .+.+.++++++...++++|+|+|||+|++ |+.++..|...|+ .+++++|+.                 .++.+.+.++
T Consensus         7 v~~aAv~la~~~~~~l~~~~ilviGaG~~-g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~   85 (159)
T d1gpja2           7 IGSAAVELAERELGSLHDKTVLVVGAGEM-GKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARS   85 (159)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEESCCHH-HHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCcccCeEEEECCCHH-HHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccC
Confidence            46778888888877999999999999886 9999999999998 699999762                 3566889999


Q ss_pred             cEEEEecCCCCc-CCCCccC---------CCeEEEEeeccCCCC
Q 022295          212 DIVIAAAGQAMM-IKGSWIK---------PGAAVIDVGTNAVDD  245 (299)
Q Consensus       212 DIVIsa~g~p~~-i~~~~vk---------~gavVIDvg~~~~~~  245 (299)
                      ||||+||+.|+. +++++++         ...++||+|+++.-+
T Consensus        86 Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          86 DVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             SEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             CEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCCCcC
Confidence            999999999985 7888884         346999999987543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.3e-11  Score=100.30  Aligned_cols=92  Identities=25%  Similarity=0.334  Sum_probs=79.0

Q ss_pred             CHHHHH-HHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcEEE
Q 022295          150 TPKGCL-ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADIVI  215 (299)
Q Consensus       150 T~~av~-~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADIVI  215 (299)
                      |-+.++ -+++..+..|.||+|+|+|.|.+ ||.+|+.|...||.|++++..             ...+.+.++.||++|
T Consensus         6 ~g~S~~~~~~r~t~~~l~Gk~v~V~GyG~i-G~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivv   84 (163)
T d1li4a1           6 CRESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFV   84 (163)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEE
T ss_pred             chhhHHHHHHHHhCceecCCEEEEeccccc-cHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEE
Confidence            344555 44556899999999999999985 999999999999999999865             356789999999999


Q ss_pred             EecCCCCcCCCCcc---CCCeEEEEeeccC
Q 022295          216 AAAGQAMMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       216 sa~g~p~~i~~~~v---k~gavVIDvg~~~  242 (299)
                      ++||.++.|+.+++   |+|+++..+|...
T Consensus        85 taTGn~~vI~~eh~~~MKdgaIL~N~Ghfd  114 (163)
T d1li4a1          85 TTTGCIDIILGRHFEQMKDDAIVCNIGHFD  114 (163)
T ss_dssp             ECSSCSCSBCHHHHTTCCTTEEEEECSSST
T ss_pred             ecCCCccchhHHHHHhccCCeEEEEecccc
Confidence            99999999998775   8899999999653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.13  E-value=7.5e-11  Score=98.62  Aligned_cols=87  Identities=24%  Similarity=0.317  Sum_probs=76.5

Q ss_pred             HHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcEEEEecCCC
Q 022295          155 LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADIVIAAAGQA  221 (299)
Q Consensus       155 ~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADIVIsa~g~p  221 (299)
                      --+++..+.-+.||+++|+|.|.+ ||.+|+.|...||.|+|+...             ...+.+.++.||++|||||.+
T Consensus        11 d~i~r~t~~~laGk~vvV~GYG~v-GrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTGn~   89 (163)
T d1v8ba1          11 DGLMRATDFLISGKIVVICGYGDV-GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNV   89 (163)
T ss_dssp             HHHHHHHCCCCTTSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSS
T ss_pred             HHHHHHhCceecCCEEEEeccccc-chhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCCCC
Confidence            344556799999999999999995 999999999999999999754             357889999999999999999


Q ss_pred             CcCCCCcc---CCCeEEEEeeccC
Q 022295          222 MMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       222 ~~i~~~~v---k~gavVIDvg~~~  242 (299)
                      +.|+.+++   |+|++|..+|...
T Consensus        90 ~vI~~~h~~~MKdgaIl~N~GHfd  113 (163)
T d1v8ba1          90 DVIKLEHLLKMKNNAVVGNIGHFD  113 (163)
T ss_dssp             SSBCHHHHTTCCTTCEEEECSSTT
T ss_pred             ccccHHHHHHhhCCeEEEeccccc
Confidence            99988775   8899999999754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.69  E-value=6.1e-09  Score=87.29  Aligned_cols=77  Identities=25%  Similarity=0.453  Sum_probs=65.3

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------------------CCChhhhccCCcEEEEecC----
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------------------TTDPESIVREADIVIAAAG----  219 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------------------t~~l~~~~~~ADIVIsa~g----  219 (299)
                      ....+|+|||+|. +|...+..+.+.||.|++.+.+                     ...+.+.+++||+||+++=    
T Consensus        30 v~pa~V~ViGaGv-aG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          30 VKPGKVVILGGGV-VGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             BCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCcEEEEECCCh-HHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            3568999999876 5999999999999999999865                     1246789999999998884    


Q ss_pred             -CCCcCCCCcc---CCCeEEEEeeccC
Q 022295          220 -QAMMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       220 -~p~~i~~~~v---k~gavVIDvg~~~  242 (299)
                       .|++|+.+|+   |||+++||+.++.
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDvaidq  135 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVAVDQ  135 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEeecCC
Confidence             3668999986   8899999999865

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.67  E-value=2.7e-08  Score=84.01  Aligned_cols=82  Identities=24%  Similarity=0.338  Sum_probs=64.7

Q ss_pred             CCHHHHHHHH-HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------------
Q 022295          149 CTPKGCLELL-KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------------  201 (299)
Q Consensus       149 cT~~av~~ll-~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------------  201 (299)
                      .|+.|.+..+ ++.+.+|+||+++|.|+++-+|+.++..|+++|++|+++.++.                          
T Consensus         4 ~~~~~~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~   83 (191)
T d1luaa1           4 TTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADD   83 (191)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSH
T ss_pred             ccHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccH
Confidence            3456655555 6679999999999999988889999999999999999998751                          


Q ss_pred             CChhhhccCCcEEEEecCCC-CcCCCCccC
Q 022295          202 TDPESIVREADIVIAAAGQA-MMIKGSWIK  230 (299)
Q Consensus       202 ~~l~~~~~~ADIVIsa~g~p-~~i~~~~vk  230 (299)
                      .++++.+.++|+||+++|.+ ..++.+.++
T Consensus        84 ~~~~~~~~~iDilin~Ag~g~~~~~~e~~~  113 (191)
T d1luaa1          84 ASRAEAVKGAHFVFTAGAIGLELLPQAAWQ  113 (191)
T ss_dssp             HHHHHHTTTCSEEEECCCTTCCCBCHHHHH
T ss_pred             HHHHHHhcCcCeeeecCccccccCCHHHHH
Confidence            23457788999999998853 345655554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.46  E-value=1.3e-07  Score=79.96  Aligned_cols=76  Identities=24%  Similarity=0.320  Sum_probs=61.7

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------------------------------
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------------------------------  202 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------------------------------  202 (299)
                      ...+|+|||+|. +|...+....+.||.|++.+.+..                                           
T Consensus        28 ~pa~VvViGaGv-aG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGV-AGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcH-HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            457999999766 599999999999999999985421                                           


Q ss_pred             ChhhhccCCcEEEEecC-----CCCcCCCCcc---CCCeEEEEeeccC
Q 022295          203 DPESIVREADIVIAAAG-----QAMMIKGSWI---KPGAAVIDVGTNA  242 (299)
Q Consensus       203 ~l~~~~~~ADIVIsa~g-----~p~~i~~~~v---k~gavVIDvg~~~  242 (299)
                      .+.+++++||+||+++=     .|.+|+.+|+   |||+++||++++.
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidq  154 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  154 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecC
Confidence            12355889999998884     3568999986   8899999999964

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.29  E-value=6.6e-07  Score=75.29  Aligned_cols=78  Identities=24%  Similarity=0.322  Sum_probs=65.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------CChhhhccCCcEEEEecCC----CCcCCCCc---
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------TDPESIVREADIVIAAAGQ----AMMIKGSW---  228 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------~~l~~~~~~ADIVIsa~g~----p~~i~~~~---  228 (299)
                      .+.||++.|||.|.+ |+.++.+|..-|+.|+.+++..        .++.+.+++||+|+.+++.    .++|+.+.   
T Consensus        39 ~l~gk~vgIiG~G~I-G~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~  117 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEI-GTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  117 (181)
T ss_dssp             CCTTCEEEEESCSTH-HHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             cccCceEEEeccccc-cccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccccccccccccceeee
Confidence            479999999999996 9999999999999999997643        4688999999999988873    24677655   


Q ss_pred             cCCCeEEEEeeccC
Q 022295          229 IKPGAAVIDVGTNA  242 (299)
Q Consensus       229 vk~gavVIDvg~~~  242 (299)
                      +|+|+++|++|.-.
T Consensus       118 mk~~ailIN~~RG~  131 (181)
T d1qp8a1         118 MAEDAVFVNVGRAE  131 (181)
T ss_dssp             SCTTCEEEECSCGG
T ss_pred             ccccceEEeccccc
Confidence            58999999998543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.18  E-value=9.7e-07  Score=75.28  Aligned_cols=81  Identities=17%  Similarity=0.286  Sum_probs=67.6

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-----------CCChhhhccCCcEEEEecCC----CCcCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-----------TTDPESIVREADIVIAAAGQ----AMMIKG  226 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-----------t~~l~~~~~~ADIVIsa~g~----p~~i~~  226 (299)
                      +.+|.||+|.|||.|.+ |+.+|.+|..-|++|..++..           ..++.+.+++||+|+.+++.    -++|+.
T Consensus        38 g~el~gk~vgIiG~G~I-G~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~  116 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHI-GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMIND  116 (197)
T ss_dssp             BCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH
T ss_pred             CccccCCeEEEeccccc-chhHHHhHhhhcccccccCcccccccccceeeeccccccccccccccccCCccccccccccH
Confidence            56789999999999996 999999999999999988754           24688999999999988872    347877


Q ss_pred             Cc---cCCCeEEEEeeccCC
Q 022295          227 SW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       227 ~~---vk~gavVIDvg~~~~  243 (299)
                      +.   +|+|+++|.+|.-.+
T Consensus       117 ~~l~~mk~~a~lIN~sRG~i  136 (197)
T d1j4aa1         117 ESIAKMKQDVVIVNVSRGPL  136 (197)
T ss_dssp             HHHHHSCTTEEEEECSCGGG
T ss_pred             HHHhhhCCccEEEecCchhh
Confidence            65   489999999986543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.14  E-value=2e-06  Score=72.99  Aligned_cols=83  Identities=16%  Similarity=0.259  Sum_probs=68.6

Q ss_pred             hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCC----CC
Q 022295          160 RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQ----AM  222 (299)
Q Consensus       160 ~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~----p~  222 (299)
                      ..+.+|.||++.|||.|.+ |+.+|.+|..-|++|..+++..             .++.+.+++||+|+..++.    -+
T Consensus        42 ~~~~eL~gktvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~  120 (193)
T d1mx3a1          42 SGAARIRGETLGIIGLGRV-GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH  120 (193)
T ss_dssp             TTCCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTT
T ss_pred             cCceeeeCceEEEeccccc-cccceeeeeccccceeeccCcccccchhhhccccccchhhccccCCEEEEeecccccchh
Confidence            4467899999999999996 9999999999999999987642             3688999999999987772    23


Q ss_pred             cCCCC---ccCCCeEEEEeeccCC
Q 022295          223 MIKGS---WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       223 ~i~~~---~vk~gavVIDvg~~~~  243 (299)
                      +++.+   .+|+|+++|++|.-.+
T Consensus       121 li~~~~l~~mk~~a~lIN~sRG~i  144 (193)
T d1mx3a1         121 LINDFTVKQMRQGAFLVNTARGGL  144 (193)
T ss_dssp             SBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             hhhHHHHhccCCCCeEEecCCceE
Confidence            67765   4689999999997544

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=3.5e-06  Score=70.88  Aligned_cols=81  Identities=20%  Similarity=0.322  Sum_probs=68.4

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------CChhhhccCCcEEEEecC-CC---CcCCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------TDPESIVREADIVIAAAG-QA---MMIKGS  227 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------~~l~~~~~~ADIVIsa~g-~p---~~i~~~  227 (299)
                      +.++.|+++.|+|.|.+ |+.+|.+|..-|++|+..++..          .++.+.+++||||+...+ .+   ++|+.+
T Consensus        39 ~~~l~~~~vgiiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~  117 (188)
T d1sc6a1          39 SFEARGKKLGIIGYGHI-GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK  117 (188)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             cccccceEEEEeecccc-hhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHH
Confidence            45789999999999996 9999999999999999997542          358899999999998887 33   478887


Q ss_pred             cc---CCCeEEEEeeccCC
Q 022295          228 WI---KPGAAVIDVGTNAV  243 (299)
Q Consensus       228 ~v---k~gavVIDvg~~~~  243 (299)
                      .+   ++|+++|.++.-.+
T Consensus       118 ~l~~mk~~a~lIN~aRG~l  136 (188)
T d1sc6a1         118 EISLMKPGSLLINASRGTV  136 (188)
T ss_dssp             HHHHSCTTEEEEECSCSSS
T ss_pred             HHhhCCCCCEEEEcCcHHh
Confidence            64   89999999997654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=4.1e-06  Score=70.33  Aligned_cols=81  Identities=23%  Similarity=0.299  Sum_probs=67.2

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecC-C---CCcCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAG-Q---AMMIK  225 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g-~---p~~i~  225 (299)
                      +.++.||++.|+|.|.+ |+.++.+|..-|+.|...+++.            .++.+.+++||+|+..++ .   .++|+
T Consensus        39 ~~~l~~k~vgiiG~G~I-G~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin  117 (184)
T d1ygya1          39 GTEIFGKTVGVVGLGRI-GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  117 (184)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             cccccceeeeeccccch-hHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhh
Confidence            45789999999999886 9999999999999999887643            367789999999998887 3   34787


Q ss_pred             CCc---cCCCeEEEEeeccCC
Q 022295          226 GSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       226 ~~~---vk~gavVIDvg~~~~  243 (299)
                      .+.   +|+|+++|++|.-.+
T Consensus       118 ~~~l~~mk~~a~lIN~sRG~i  138 (184)
T d1ygya1         118 KEALAKTKPGVIIVNAARGGL  138 (184)
T ss_dssp             HHHHTTSCTTEEEEECSCTTS
T ss_pred             HHHHhhhCCCceEEEecchhh
Confidence            755   588999999997554

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.02  E-value=6e-06  Score=69.38  Aligned_cols=82  Identities=20%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCcEEEEecCC-C---C
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREADIVIAAAGQ-A---M  222 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~ADIVIsa~g~-p---~  222 (299)
                      .+.+++|+++.|+|.|.+ |+.++.+|..-|+.|....+.              ..++.+.+++||+|+...+. +   +
T Consensus        38 ~~~~l~~~~vgiiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~  116 (188)
T d2naca1          38 HAYDLEAMHVGTVAAGRI-GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEH  116 (188)
T ss_dssp             TCCCCTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTT
T ss_pred             cceeccccceeecccccc-chhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchh
Confidence            467899999999999996 999999999999999988753              24678999999999988873 2   4


Q ss_pred             cCCCCc---cCCCeEEEEeeccCC
Q 022295          223 MIKGSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       223 ~i~~~~---vk~gavVIDvg~~~~  243 (299)
                      +|+.+.   +|+|+++|.++.-.+
T Consensus       117 li~~~~l~~mk~ga~lIN~aRG~i  140 (188)
T d2naca1         117 MINDETLKLFKRGAYIVNTARGKL  140 (188)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGG
T ss_pred             hhHHHHHHhCCCCCEEEecCchhh
Confidence            677655   589999999997544

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.00  E-value=4.2e-06  Score=71.16  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=67.9

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------CChhhhccCCcEEEEecCC-C---CcCCCC
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------TDPESIVREADIVIAAAGQ-A---MMIKGS  227 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------~~l~~~~~~ADIVIsa~g~-p---~~i~~~  227 (299)
                      +.+|.||++.|||.|.+ |+.++.+|..-|++|..++++.          .++.+.+++||+|+..++. +   ++|+.+
T Consensus        40 ~~~l~~ktvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~  118 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHI-GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEA  118 (199)
T ss_dssp             CCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHH
T ss_pred             cccccceeeeeeecccc-cccccccccccceeeeccCCccchhhhcchhHHHHHHHHHhcccceeeecccccccccccHH
Confidence            56899999999999996 9999999999999999997642          2577899999999988763 2   368876


Q ss_pred             c---cCCCeEEEEeeccCC
Q 022295          228 W---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       228 ~---vk~gavVIDvg~~~~  243 (299)
                      .   +|+|+++|.+|.-.+
T Consensus       119 ~l~~mk~~a~lIN~aRG~v  137 (199)
T d1dxya1         119 AFNLMKPGAIVINTARPNL  137 (199)
T ss_dssp             HHHHSCTTEEEEECSCTTS
T ss_pred             HhhccCCceEEEecccHhh
Confidence            5   489999999997554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.89  E-value=9.7e-06  Score=68.48  Aligned_cols=82  Identities=15%  Similarity=0.229  Sum_probs=67.5

Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecC-CC---C
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAG-QA---M  222 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g-~p---~  222 (299)
                      .+.+++||++.|||.|.+ |+.++.+|..-|+.|..++++.              .++.+.+++||+|+..++ .|   +
T Consensus        41 ~~~~l~g~tvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~  119 (191)
T d1gdha1          41 VGEKLDNKTLGIYGFGSI-GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRY  119 (191)
T ss_dssp             CBCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             ccceecccceEEeecccc-hHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhh
Confidence            356789999999999996 9999999999999998886532              367899999999998887 33   4


Q ss_pred             cCCCCc---cCCCeEEEEeeccCC
Q 022295          223 MIKGSW---IKPGAAVIDVGTNAV  243 (299)
Q Consensus       223 ~i~~~~---vk~gavVIDvg~~~~  243 (299)
                      +|+.+.   +|+|+++|+++.-.+
T Consensus       120 li~~~~l~~mk~~a~lIN~sRG~i  143 (191)
T d1gdha1         120 FFNKATIKSLPQGAIVVNTARGDL  143 (191)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGG
T ss_pred             eecHHHhhCcCCccEEEecCCccc
Confidence            787655   589999999997654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=6.5e-06  Score=61.23  Aligned_cols=37  Identities=22%  Similarity=0.380  Sum_probs=34.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++||+|+|+|.|.+ |+.+|.+|.++|+.|++++.+.
T Consensus         2 ~~~~K~v~ViGlG~s-G~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHH-HHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEeeCCc
Confidence            689999999999998 9999999999999999998754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.84  E-value=2.5e-06  Score=68.81  Aligned_cols=76  Identities=17%  Similarity=0.194  Sum_probs=57.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------------ChhhhccCCcEEEEecCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------------DPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------------~l~~~~~~ADIVIsa~g~p~  222 (299)
                      ++|+|+|||+|.+ |+++|..|.++|..|++++++..                       .+.+.+..+|++|++++...
T Consensus         1 ~~K~IliiGaG~~-G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~   79 (182)
T d1e5qa1           1 ATKSVLMLGSGFV-TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   79 (182)
T ss_dssp             CCCEEEEECCSTT-HHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGG
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchh
Confidence            4799999999875 99999999999999999997621                       23356788899998876432


Q ss_pred             --cCCCCccCCCeEEEEeeccC
Q 022295          223 --MIKGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       223 --~i~~~~vk~gavVIDvg~~~  242 (299)
                        .+.....+.+..++|+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~  101 (182)
T d1e5qa1          80 HATVIKSAIRQKKHVVTTSYVS  101 (182)
T ss_dssp             HHHHHHHHHHHTCEEECSSCCC
T ss_pred             hhHHHHHHHhhccceeecccCc
Confidence              13334556678888887653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.84  E-value=1.2e-05  Score=65.35  Aligned_cols=73  Identities=23%  Similarity=0.374  Sum_probs=59.3

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCc----C-CC---
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMM----I-KG---  226 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~----i-~~---  226 (299)
                      +|-|||-|.+ |.++|..|++.|.+|++++++.              .+..+.++++|+||++++.+.-    + ..   
T Consensus         2 kIgiIGlG~M-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           2 KVGFIGLGIM-GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             EEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             EEEEEehhHH-HHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            5899999886 9999999999999999998763              3567889999999999986652    2 22   


Q ss_pred             -CccCCCeEEEEeeccC
Q 022295          227 -SWIKPGAAVIDVGTNA  242 (299)
Q Consensus       227 -~~vk~gavVIDvg~~~  242 (299)
                       ...++|.++||.+...
T Consensus        81 ~~~~~~g~iiid~sT~~   97 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIA   97 (161)
T ss_dssp             HHHCCTTCEEEECSCCC
T ss_pred             hhccCCCCEEEECCCCC
Confidence             2357899999998753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.82  E-value=1.1e-05  Score=65.61  Aligned_cols=71  Identities=23%  Similarity=0.237  Sum_probs=57.3

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-----------------------------CCChhhhccCCcEEEEe
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-----------------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-----------------------------t~~l~~~~~~ADIVIsa  217 (299)
                      .|+++|||+|.+ |.++|..|.+.|..|++..+.                             +.++.+.+++||+||.+
T Consensus         1 sk~iaIiGaG~~-G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLGLGNG-GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            389999998875 999999999999999999764                             24677889999999999


Q ss_pred             cCCCCc---C--CCCccCCCeEEEEe
Q 022295          218 AGQAMM---I--KGSWIKPGAAVIDV  238 (299)
Q Consensus       218 ~g~p~~---i--~~~~vk~gavVIDv  238 (299)
                      +.....   +  =..+++++++|+..
T Consensus        80 v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          80 VPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EchhHHHHHHHHhhhccCCCCEEEEe
Confidence            986542   2  13578888888754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=1.8e-05  Score=63.37  Aligned_cols=76  Identities=20%  Similarity=0.268  Sum_probs=60.1

Q ss_pred             cCCcEEEEEc-CCccchHHHHHHHhhCCCeEEEEcCCCC-ChhhhccCCcEEEEecCCCCc---C--CCCccCCCeEEEE
Q 022295          165 IKGKRAVVVG-RSNIVGLPVSLLLLKADATVTIVHSHTT-DPESIVREADIVIAAAGQAMM---I--KGSWIKPGAAVID  237 (299)
Q Consensus       165 l~gk~vvViG-~s~~vG~pla~lL~~~gatVtv~~~~t~-~l~~~~~~ADIVIsa~g~p~~---i--~~~~vk~gavVID  237 (299)
                      ..=|+|.||| .|.+ |.++|..|.+.|.+|+++++... ...+....+|+++.++.....   +  -...++++++++|
T Consensus         7 ~~~~kI~iIGg~G~m-G~~la~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD   85 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKL-GGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLAD   85 (152)
T ss_dssp             TTCCCEEEETTTSHH-HHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEE
T ss_pred             CCCCeEEEEcCCCHH-HHHHHHHHHHcCCCcEecccccccccchhhhhccccccccchhhheeeeecccccccCCceEEE
Confidence            3447999999 6765 99999999999999999998754 345668999999999885442   1  2345688999999


Q ss_pred             eecc
Q 022295          238 VGTN  241 (299)
Q Consensus       238 vg~~  241 (299)
                      ++..
T Consensus        86 ~~Sv   89 (152)
T d2pv7a2          86 LTSV   89 (152)
T ss_dssp             CCSC
T ss_pred             eccc
Confidence            9863

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.67  E-value=4.8e-05  Score=61.77  Aligned_cols=73  Identities=25%  Similarity=0.407  Sum_probs=59.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCcEEEEecCCCC----cC-CC--
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREADIVIAAAGQAM----MI-KG--  226 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~ADIVIsa~g~p~----~i-~~--  226 (299)
                      ++|.+||-|.+ |.++|..|++.|.+|++++++              ..++.+.++++|+|++++..+.    ++ ..  
T Consensus         2 ~kIg~IGlG~M-G~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~   80 (162)
T d3cuma2           2 KQIAFIGLGHM-GAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   80 (162)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred             CEEEEEEEHHH-HHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence            57999999886 999999999999999999876              2467799999999999998654    11 21  


Q ss_pred             --CccCCCeEEEEeecc
Q 022295          227 --SWIKPGAAVIDVGTN  241 (299)
Q Consensus       227 --~~vk~gavVIDvg~~  241 (299)
                        ..+++|.++||.+..
T Consensus        81 ~~~~l~~g~iiid~st~   97 (162)
T d3cuma2          81 LLAHIAPGTLVLECSTI   97 (162)
T ss_dssp             HHHHSCTTCEEEECSCC
T ss_pred             ccccCCCCCEEEECCCC
Confidence              246889999999865

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.52  E-value=0.00011  Score=62.41  Aligned_cols=79  Identities=22%  Similarity=0.322  Sum_probs=58.1

Q ss_pred             CCHHHHHHHHH----hhCC-CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhh-cc
Q 022295          149 CTPKGCLELLK----RSGV-TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESI-VR  209 (299)
Q Consensus       149 cT~~av~~ll~----~~~~-~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~-~~  209 (299)
                      +|+.|+...++    +.+. +|+||+|+|-|.|+ ||..+|..|.+.|++|+++..+.             -+..+. ..
T Consensus         4 ~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~-VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~   82 (201)
T d1c1da1           4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGA-VGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST   82 (201)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccc
Confidence            57788776665    4576 79999999999988 59999999999999999997652             123344 34


Q ss_pred             CCcEEEEecCCCCcCCCCcc
Q 022295          210 EADIVIAAAGQAMMIKGSWI  229 (299)
Q Consensus       210 ~ADIVIsa~g~p~~i~~~~v  229 (299)
                      .+||++-| ...+.|+.+.+
T Consensus        83 ~~DI~iPc-A~~~~I~~~~a  101 (201)
T d1c1da1          83 PCDVFAPC-AMGGVITTEVA  101 (201)
T ss_dssp             CCSEEEEC-SCSCCBCHHHH
T ss_pred             cceeeecc-cccccccHHHH
Confidence            78998844 33455655443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.49  E-value=6.1e-05  Score=57.58  Aligned_cols=59  Identities=22%  Similarity=0.327  Sum_probs=45.2

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-CC-----------------hhhhccCCcEEEEecCCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-TD-----------------PESIVREADIVIAAAGQAM  222 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-~~-----------------l~~~~~~ADIVIsa~g~p~  222 (299)
                      ++++||+|+|||.|. +|..-+..|++.||.|++..... ++                 -.+.+..+++|+.+++.+.
T Consensus         8 l~l~~k~vlVvG~G~-va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~   84 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGD-VAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT   84 (113)
T ss_dssp             ECCBTCEEEEECCSH-HHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred             EEeCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHH
Confidence            478999999999888 59999999999999999986431 11                 1234667788888877654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=6e-05  Score=61.96  Aligned_cols=95  Identities=19%  Similarity=0.306  Sum_probs=71.8

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-------------------CChh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-------------------TDPE  205 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-------------------~~l~  205 (299)
                      .++|.+..++..+++..-.-.|.+|+|+|+|+ +|..+++++...|| +|+++.++.                   .+..
T Consensus         8 ~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~-iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~   86 (182)
T d1vj0a2           8 MAMCSGATAYHAFDEYPESFAGKTVVIQGAGP-LGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVE   86 (182)
T ss_dssp             HHTTHHHHHHHHHHTCSSCCBTCEEEEECCSH-HHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHH
T ss_pred             HhhcHHHHHHHHHHHHhCCCCCCEEEEECCCc-cchhheecccccccccccccccccccccccccccceEEEeccccchH
Confidence            46788888888988776556799999999976 69999999999998 788886431                   2222


Q ss_pred             hh---c------cCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          206 SI---V------READIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 ~~---~------~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                      +.   +      +.+|+||.++|.|..+.  -+.+++|..++=+|..
T Consensus        87 ~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          87 ERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             HHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeec
Confidence            21   1      13799999999887543  4678898888888864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.45  E-value=3.9e-05  Score=62.04  Aligned_cols=71  Identities=21%  Similarity=0.239  Sum_probs=55.5

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------CChhhhccCCcEEEEecCCCC---cCC--CCc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------TDPESIVREADIVIAAAGQAM---MIK--GSW  228 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~---~i~--~~~  228 (299)
                      +|.|||.|.+ |..+|..|.+.|.+|+.++++.               .+..+.+++||+||.+++...   .+.  .+.
T Consensus         2 kI~iIG~G~m-G~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~~l~~~   80 (165)
T d2f1ka2           2 KIGVVGLGLI-GASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLIPH   80 (165)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             EEEEEeecHH-HHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhhhhhhh
Confidence            6899999885 9999999999999999998652               123367899999999986321   121  356


Q ss_pred             cCCCeEEEEeec
Q 022295          229 IKPGAAVIDVGT  240 (299)
Q Consensus       229 vk~gavVIDvg~  240 (299)
                      ++++++|+|++.
T Consensus        81 l~~~~iv~~~~s   92 (165)
T d2f1ka2          81 LSPTAIVTDVAS   92 (165)
T ss_dssp             SCTTCEEEECCS
T ss_pred             cccccceeeccc
Confidence            889999999974

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=7.7e-05  Score=56.65  Aligned_cols=80  Identities=13%  Similarity=0.283  Sum_probs=60.3

Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccC
Q 022295           41 GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI  120 (299)
Q Consensus        41 ~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i  120 (299)
                      ++.+-+ ..+|.|.+ =++++++++++|++++|..|+.    +++.+.++.+.+ .++.|++|++|+++.+  -++++.+
T Consensus         7 ~~~~~i-~g~P~s~S-P~ihn~~~~~~gi~~~Y~~~~v----~~l~~~~~~~~~-~~~~G~nVT~P~K~~~--~~~~d~~   77 (102)
T d1npya2           7 QLCMSL-SGRPSNFG-TTFHNYLYDKLGLNFIYKAFTT----QDIEHAIKGVRA-LGIRGCAVSMPFKETC--MPFLDEI   77 (102)
T ss_dssp             EEEEEE-CSSCCSHH-HHHHHHHHHHHTCCEEEEEECC----SCHHHHHHHHHH-HTCCEEEECTTCTTTT--GGGCSEE
T ss_pred             EEEEEE-cCCcccCC-HHHHHHHHHHcCCCeEEeeEec----ccHHHHHHHHhc-cccceeEEehhHHHHH--HHHhhhC
Confidence            454344 44778875 4689999999999999999863    246666666665 4799999999999887  6777888


Q ss_pred             Cc-cccCCCC
Q 022295          121 SL-EKDVDGF  129 (299)
Q Consensus       121 ~p-~KDVDg~  129 (299)
                      ++ .+.+.++
T Consensus        78 s~~a~~igAv   87 (102)
T d1npya2          78 HPSAQAIESV   87 (102)
T ss_dssp             CHHHHTTTCC
T ss_pred             ChhhhhcCcE
Confidence            77 6666554

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=3.3e-05  Score=58.76  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=52.6

Q ss_pred             HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cccCCCC
Q 022295           58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGF  129 (299)
Q Consensus        58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KDVDg~  129 (299)
                      .+++.++++.|+++.|..++  ++.++|.+.++.+.+ .++.|++|++|+++.+  -++++.++| .+.+.++
T Consensus        20 ~ihn~~f~~~gi~~~Y~~~~--v~~~~l~~~~~~l~~-~~~~G~nVT~P~K~~~--~~~~d~~~~~a~~igAv   87 (102)
T d1vi2a2          20 EMQNKALEKAGLPFTYMAFE--VDNDSFPGAIEGLKA-LKMRGTGVSMPNKQLA--CEYVDELTPAAKLVGAI   87 (102)
T ss_dssp             HHHHHHHHHTTCSEEEEEEE--CCTTTHHHHHHHHHH-TTCCEEEECTTSTTGG--GGGCSEECHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCcEEeeEe--eCchHHHHHHHHhhh-hccchhhhhhHHHHHH--HHhcccCCHHHHhhCcE
Confidence            57899999999999999885  666778888888876 4799999999999666  556666666 4555444

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.31  E-value=0.00013  Score=58.58  Aligned_cols=71  Identities=11%  Similarity=0.187  Sum_probs=55.7

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------------CCChhhhccCCcEEEEecCCCCcCC--CCccCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------------TTDPESIVREADIVIAAAGQAMMIK--GSWIKP  231 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------------t~~l~~~~~~ADIVIsa~g~p~~i~--~~~vk~  231 (299)
                      ++.+||.|.+ |.+++.-|.+.+..|++++++               +.+..+.+++||+||.++. |..+.  -..+++
T Consensus         2 kIg~IG~G~m-G~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl~~l~~   79 (152)
T d2ahra2           2 KIGIIGVGKM-ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPLHF   79 (152)
T ss_dssp             EEEEECCSHH-HHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTSCC
T ss_pred             EEEEEeccHH-HHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHhhhccc
Confidence            6899999886 999999999999999999865               3467788999999999984 54321  123678


Q ss_pred             CeEEEEeecc
Q 022295          232 GAAVIDVGTN  241 (299)
Q Consensus       232 gavVIDvg~~  241 (299)
                      +.++|++...
T Consensus        80 ~~~iis~~ag   89 (152)
T d2ahra2          80 KQPIISMAAG   89 (152)
T ss_dssp             CSCEEECCTT
T ss_pred             ceeEeccccc
Confidence            8889887643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.23  E-value=0.00014  Score=59.74  Aligned_cols=96  Identities=20%  Similarity=0.224  Sum_probs=70.3

Q ss_pred             ccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-------------------CCh
Q 022295          145 LFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-------------------TDP  204 (299)
Q Consensus       145 ~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-------------------~~l  204 (299)
                      .++||.-.-.+..++..++. .|.+|+|+|.|+ ||...++++...|+ .|+++.++.                   .+.
T Consensus         7 ~~l~~~~~ta~~a~~~a~~~-~g~~VlI~GaG~-vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~   84 (174)
T d1jqba2           7 VMITDMMTTGFHGAELADIE-MGSSVVVIGIGA-VGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHI   84 (174)
T ss_dssp             HTTTTHHHHHHHHHHHTTCC-TTCCEEEECCSH-HHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCH
T ss_pred             HHhhhHHHHHHHHHHHhCCC-CCCEEEEEcCCc-chhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhH
Confidence            35777655566777776654 689999999977 59999999999998 688776541                   222


Q ss_pred             hh----hc--cCCcEEEEecCCCCcCC--CCccCCCeEEEEeeccC
Q 022295          205 ES----IV--READIVIAAAGQAMMIK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       205 ~~----~~--~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~~  242 (299)
                      .+    .+  +.+|+||-++|.+..+.  -+.++|+..++-+|...
T Consensus        85 ~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          85 EDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             HHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             HHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecC
Confidence            22    22  23899999999987653  36689998898899754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00021  Score=59.35  Aligned_cols=57  Identities=23%  Similarity=0.292  Sum_probs=47.5

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------------CChhhhccCCcEEEEecCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      ..|+|+|+|+++-+|+.++..|+++|..|++..|+.                     .++.+.++.+|+||.++|...
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~   79 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN   79 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccCC
Confidence            468999999999999999999999999999997642                     134577999999999988543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.0002  Score=57.12  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=31.7

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      +.++||+|+|||.|. ||.--+..|++.||.||++.
T Consensus         9 ~~l~gkrvLViGgG~-va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1           9 HQLKDKRILLIGGGE-VGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             ECCTTCEEEEEEESH-HHHHHHHHHGGGTCEEEEEE
T ss_pred             eeeCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEe
Confidence            468999999999877 59999999999999999995

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.07  E-value=4.8e-05  Score=57.65  Aligned_cols=68  Identities=12%  Similarity=0.044  Sum_probs=53.5

Q ss_pred             HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cccCCCCC
Q 022295           58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGFH  130 (299)
Q Consensus        58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KDVDg~~  130 (299)
                      .+++.++++.|+++.|..++  ++.++|.+.++.+.+ .++.|++|++|+++.+  .++++.+++ .+.+.+++
T Consensus        18 ~ihn~~~~~~gi~~~y~~~~--v~~~~~~~~~~~l~~-~~~~G~nVT~P~K~~~--~~~~d~~~~~a~~igAvN   86 (101)
T d1p77a2          18 LIQNKLAAQTHQTMEYIAKL--GDLDAFEQQLLAFFE-EGAKGCNITSPFKERA--YQLADEYSQRAKLAEACN   86 (101)
T ss_dssp             HHHHHHHHHTTCCEEEEEEE--CCTTTHHHHHHHHHH-TTCCEEEECTTCHHHH--HHHCSEECHHHHHHTCCS
T ss_pred             HHHHHHHHHcCCCccccccc--CCHHHHHHHHHHHHh-ccccceeeccHHHHHH--HHHhccCCHHHHHcCeeE
Confidence            46789999999999998885  666788888888875 5799999999999655  556666666 56666554

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=3.6e-05  Score=58.42  Aligned_cols=72  Identities=11%  Similarity=0.095  Sum_probs=54.4

Q ss_pred             cHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cccCCCCC
Q 022295           53 SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGFH  130 (299)
Q Consensus        53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KDVDg~~  130 (299)
                      |.+- .+++.++++.|++..|..+.  +..+++.+.++.+.+ .++.|++|++|+++.+  .++++.+++ .+.+.+++
T Consensus        14 S~SP-~ihn~~~~~~gi~~~y~~~~--v~~~~~~~~~~~l~~-~~~~G~nVT~P~K~~~--~~~~d~~~~~a~~igAvN   86 (101)
T d1nyta2          14 SKSP-FIHQQFAQQLNIEHPYGRVL--APINDFINTLNAFFS-AGGKGANVTVPFKEEA--FARADELTERAALAGAVN   86 (101)
T ss_dssp             CSHH-HHHHHHHHHHTCCCCEEEEE--CCTTCHHHHHHHHHH-TTCCEEEECTTCHHHH--HHHCSEECHHHHHHTCCS
T ss_pred             ccCH-HHHHHHHHHcCCcchhhhhc--CChHhHHHHHHHhhh-ccchhheeehHHHHHH--HHHhccCChHHHHhCcEE
Confidence            4444 47899999999999988774  666788888888875 5799999999999555  556666666 56665554

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=0.00051  Score=58.99  Aligned_cols=58  Identities=17%  Similarity=0.297  Sum_probs=47.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC-----------------------hhhhccCCcEEEEecC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD-----------------------PESIVREADIVIAAAG  219 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~-----------------------l~~~~~~ADIVIsa~g  219 (299)
                      -+|+||+++|.|+|.-+|+.+|..|+++|++|.++.++...                       ..+....-|++|+.+|
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            36899999999999888999999999999999999876421                       1133446799998888


Q ss_pred             C
Q 022295          220 Q  220 (299)
Q Consensus       220 ~  220 (299)
                      .
T Consensus        83 ~   83 (237)
T d1uzma1          83 L   83 (237)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.02  E-value=4.3e-05  Score=58.88  Aligned_cols=83  Identities=19%  Similarity=0.219  Sum_probs=58.1

Q ss_pred             cEEEEEEECCCc-ccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHc
Q 022295           40 PGLAVVIVGGRK-DSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLG  118 (299)
Q Consensus        40 P~Laii~vg~d~-~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~  118 (299)
                      .++ .=++|+.- .|.+- .++++.+++.|++++|..++  +++++|.+.++.+.+ .++.|++|++|+++.+  -.+++
T Consensus        11 tk~-~gliG~pi~~S~SP-~ihn~~~~~~gi~~~y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~~--~~~~d   83 (110)
T d1nvta2          11 TKV-IGLIGHPVEHSFSP-IMHNAAFKDKGLNYVYVAFD--VLPENLKYVIDGAKA-LGIVGFNVTIPHKIEI--MKYLD   83 (110)
T ss_dssp             CEE-EEEEESSCTTCSHH-HHHHHHHHHTTCCEEEEEEE--CCGGGGGGHHHHHHH-HTCCEEEECTTSTTGG--GGGCS
T ss_pred             ccE-EEEEcCCcccccCH-HHHHHHHHHcCCcEEEeecc--cCHHHHHHHHHhhcc-cCcchhheehHHHHHH--HHHhc
Confidence            444 22357332 23333 36789999999999999885  666667777777664 3799999999999776  56777


Q ss_pred             cCCc-cccCCCC
Q 022295          119 EISL-EKDVDGF  129 (299)
Q Consensus       119 ~i~p-~KDVDg~  129 (299)
                      .+++ .+.+.++
T Consensus        84 ~~s~~a~~igav   95 (110)
T d1nvta2          84 EIDKDAQLIGAV   95 (110)
T ss_dssp             EECHHHHHHTCC
T ss_pred             cCCHHHHHhCcE
Confidence            7777 5555554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00056  Score=55.20  Aligned_cols=94  Identities=18%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC--------------------hhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD--------------------PES  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~--------------------l~~  206 (299)
                      ++|-...+++.|++.++ -.|.+|+|+|.|+ ||...++++...||.+.+..+....                    ...
T Consensus        12 l~Cag~Tay~al~~~~~-~~G~~VlI~GaG~-vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~   89 (168)
T d1uufa2          12 LLCAGITTYSPLRHWQA-GPGKKVGVVGIGG-LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAA   89 (168)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHT
T ss_pred             HHhHHHHHHHHHHHhCC-CCCCEEEEeccch-HHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHH
Confidence            46743344566666554 3699999999876 6999999999999988777544211                    123


Q ss_pred             hccCCcEEEEecCCCCcC--CCCccCCCeEEEEeeccC
Q 022295          207 IVREADIVIAAAGQAMMI--KGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       207 ~~~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~~  242 (299)
                      ..+.+|++|-++|.+..+  --++++++-.++-+|...
T Consensus        90 ~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          90 HLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             TTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-
T ss_pred             hcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCC
Confidence            345689999999987654  336788888888888653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00093  Score=53.89  Aligned_cols=94  Identities=19%  Similarity=0.284  Sum_probs=65.6

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------C-hh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------D-PE  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~-l~  205 (299)
                      ++|...-.+..|++.++ -.|.+|+|+|.|+ +|..+++++...|++|+++.++..                    + .+
T Consensus         9 l~cag~Ta~~al~~~~~-~~g~~vlI~GaG~-vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~   86 (168)
T d1piwa2           9 LLCGGLTVYSPLVRNGC-GPGKKVGIVGLGG-IGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGE   86 (168)
T ss_dssp             GGTHHHHHHHHHHHTTC-STTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHH
T ss_pred             HHHHHHHHHHHHHHhCc-CCCCEEEEECCCC-cchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHH
Confidence            56755556677777665 4799999999876 699999988889999888865421                    1 12


Q ss_pred             hhccCCcEEEEecCCCCc--CC--CCccCCCeEEEEeeccC
Q 022295          206 SIVREADIVIAAAGQAMM--IK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       206 ~~~~~ADIVIsa~g~p~~--i~--~~~vk~gavVIDvg~~~  242 (299)
                      ......|.+|.++|.+.-  +.  -+.++++-.++-+|...
T Consensus        87 ~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          87 KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCC
T ss_pred             hhhcccceEEEEecCCccchHHHHHHHhhccceEEEecccc
Confidence            334557888887775542  22  24578877788888643

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.99  E-value=0.00049  Score=55.60  Aligned_cols=56  Identities=23%  Similarity=0.308  Sum_probs=44.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCC--------------------------CCChhhhccCCcEEEEec
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSH--------------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      +-+||+|||+|. ||.++|.+|+..+ +++.+++.+                          +.+.++.+++||+||.++
T Consensus         6 k~~KI~IIGaG~-VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGSGM-IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            458999999866 6999999888777 588887643                          234557789999999999


Q ss_pred             CCCC
Q 022295          219 GQAM  222 (299)
Q Consensus       219 g~p~  222 (299)
                      |.|.
T Consensus        85 g~~~   88 (154)
T d1pzga1          85 GLTK   88 (154)
T ss_dssp             SCSS
T ss_pred             cccc
Confidence            8764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.0004  Score=59.81  Aligned_cols=38  Identities=26%  Similarity=0.317  Sum_probs=35.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+|+||+++|.|+|.-+|+.+|..|+++|+.|.++.++
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   38 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999999999888999999999999999999875

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.00043  Score=59.15  Aligned_cols=57  Identities=32%  Similarity=0.391  Sum_probs=45.1

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------------C---hhhhccCCcEEEEecCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------------D---PESIVREADIVIAAAGQA  221 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------------~---l~~~~~~ADIVIsa~g~p  221 (299)
                      |+||+++|.|+|.-+|+.+|..|+++|++|.++.++..                +   +.+...+-|++|+.+|.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~   77 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGP   77 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEeccccc
Confidence            78999999999888899999999999999999987521                1   224455677888777643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.94  E-value=0.0003  Score=58.69  Aligned_cols=54  Identities=26%  Similarity=0.393  Sum_probs=45.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------CCChhhhccCCcEEEEecC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------TTDPESIVREADIVIAAAG  219 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------t~~l~~~~~~ADIVIsa~g  219 (299)
                      ++|+|||+|.. |.++|..|.+.|.+|++..++                            |.++.+.+++||+||.|++
T Consensus         8 ~KI~ViGaG~w-GtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP   86 (189)
T d1n1ea2           8 NKAVVFGSGAF-GTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC
T ss_pred             ceEEEECCCHH-HHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc
Confidence            67999998775 999999999998899997643                            2367788999999999998


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      ...
T Consensus        87 s~~   89 (189)
T d1n1ea2          87 TQF   89 (189)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00049  Score=59.24  Aligned_cols=39  Identities=23%  Similarity=0.309  Sum_probs=35.8

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ..|+||+++|.|+|.-+|+.+|..|+++|++|.++.++.
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            468999999999999999999999999999999998763

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00026  Score=57.47  Aligned_cols=95  Identities=11%  Similarity=0.040  Sum_probs=66.3

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPES  206 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~  206 (299)
                      -+||++..++..|.+..---.|.+|+|.|+++.||..+.+++...||+|++..++                   +.++.+
T Consensus         8 ~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~   87 (179)
T d1qora2           8 ASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVE   87 (179)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHH
Confidence            3588888888888765443468999999999988999999999999998888543                   334443


Q ss_pred             hc------cCCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295          207 IV------READIVIAAAGQAMMI-KGSWIKPGAAVIDVGT  240 (299)
Q Consensus       207 ~~------~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~  240 (299)
                      .+      +..|+|+.++|.+.+- ..+.++++..++-+|.
T Consensus        88 ~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          88 RLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             HHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeeccc
Confidence            32      2368888888765442 3355666555555554

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00044  Score=59.05  Aligned_cols=45  Identities=22%  Similarity=0.334  Sum_probs=39.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhc
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIV  208 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~  208 (299)
                      +|+||.++|.|+|.-+|+.+|..|+++|++|.++.++...+++..
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   46 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA   46 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            689999999999999999999999999999999998766655433

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.89  E-value=0.00027  Score=57.77  Aligned_cols=74  Identities=14%  Similarity=0.198  Sum_probs=57.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------------------ChhhhccCCcEEEEecCCCCcC-
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------------------DPESIVREADIVIAAAGQAMMI-  224 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------------------~l~~~~~~ADIVIsa~g~p~~i-  224 (299)
                      ++|-+||-|.+ |.++|..|++.|..|++++++..                      ++.+.+..+|++|.....+.-+ 
T Consensus         3 ~nIg~IGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           3 ADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CcEEEEeEhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            68999999986 99999999999999999987531                      2336677889999887655421 


Q ss_pred             ---C--CCccCCCeEEEEeeccC
Q 022295          225 ---K--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       225 ---~--~~~vk~gavVIDvg~~~  242 (299)
                         .  .+.+++|.++||.+...
T Consensus        82 ~v~~~l~~~~~~g~iiid~sT~~  104 (176)
T d2pgda2          82 NFIEKLVPLLDIGDIIIDGGNSE  104 (176)
T ss_dssp             HHHHHHHHHCCTTCEEEECSCCC
T ss_pred             HHHHHHHhccccCcEEEecCcch
Confidence               1  13468899999998653

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.87  E-value=0.00076  Score=60.65  Aligned_cols=76  Identities=13%  Similarity=0.274  Sum_probs=58.3

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhh-CC-CeEEEEcCCC------------------CChhhhccCCcEEEEecCCCC-cC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLK-AD-ATVTIVHSHT------------------TDPESIVREADIVIAAAGQAM-MI  224 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~-~g-atVtv~~~~t------------------~~l~~~~~~ADIVIsa~g~p~-~i  224 (299)
                      .-+++.|||.|.- ++.-+.+|.. .. .+|.+.+++.                  .+..+.++.|||||++|.+.. ++
T Consensus       124 ~~~~l~iiGaG~Q-A~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~P~~  202 (320)
T d1omoa_         124 NSSVFGFIGCGTQ-AYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKPVV  202 (320)
T ss_dssp             TCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSCCB
T ss_pred             CccEEEEecCccc-HHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCccccc
Confidence            3478999997764 8877776654 33 3788887652                  134577899999999999654 68


Q ss_pred             CCCccCCCeEEEEeeccC
Q 022295          225 KGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       225 ~~~~vk~gavVIDvg~~~  242 (299)
                      +.+|++||+.|.=+|.+.
T Consensus       203 ~~~~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         203 KAEWVEEGTHINAIGADG  220 (320)
T ss_dssp             CGGGCCTTCEEEECSCCS
T ss_pred             chhhcCCCCeEeecCCcc
Confidence            999999999999999753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.86  E-value=0.00041  Score=55.80  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCCC----------------Ch-hhhccCCcEEEEecCCCC---cCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHTT----------------DP-ESIVREADIVIAAAGQAM---MIK  225 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t~----------------~l-~~~~~~ADIVIsa~g~p~---~i~  225 (299)
                      |++.|||.|.+ |..+|..|.+.|.  +|+.++++..                +. .....++|+||.|++...   ++.
T Consensus         2 k~I~IIG~G~m-G~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~   80 (171)
T d2g5ca2           2 QNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (171)
T ss_dssp             CEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEEccCHH-HHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhh
Confidence            57999999876 9999999999884  6777775421                11 233457999999988322   221


Q ss_pred             --CCccCCCeEEEEeecc
Q 022295          226 --GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       226 --~~~vk~gavVIDvg~~  241 (299)
                        .+.++++++|+|++..
T Consensus        81 ~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          81 KLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHSCTTCEEEECCSC
T ss_pred             hhhccccccccccccccc
Confidence              2457889999999964

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00038  Score=56.66  Aligned_cols=93  Identities=16%  Similarity=0.209  Sum_probs=63.6

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh------------------h--h
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP------------------E--S  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l------------------~--~  206 (299)
                      +||.+.-.+..|++.++ -.|++|+|.|+++.||..+.+++...|++|..+.++...+                  .  .
T Consensus         9 l~~~~~TA~~al~~~~~-~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~   87 (171)
T d1iz0a2           9 FPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAK   87 (171)
T ss_dssp             SHHHHHHHHHHHHHTTC-CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC-CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhh
Confidence            56666666777776543 4799999999877889999999999999988775432110                  1  1


Q ss_pred             hccCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          207 IVREADIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       207 ~~~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                      .-+.+|+||.++|. .+ -.-++++++-.++.+|..
T Consensus        88 ~~~g~D~v~d~~G~-~~~~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2          88 AWGGLDLVLEVRGK-EVEESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             HTTSEEEEEECSCT-THHHHHTTEEEEEEEEEC---
T ss_pred             ccccccccccccch-hHHHHHHHHhcCCcEEEEeCC
Confidence            23458999988873 22 122568888888888853

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.84  E-value=0.00072  Score=53.73  Aligned_cols=72  Identities=14%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------ChhhhccCCcEEEEecCCCCcC---CCCccCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------DPESIVREADIVIAAAGQAMMI---KGSWIKP  231 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------~l~~~~~~ADIVIsa~g~p~~i---~~~~vk~  231 (299)
                      ||.|||.|.+ |.++|..|++.|.+|+++++...              +..+.++++|+||+++......   ..-.-..
T Consensus         2 kIgiIG~G~m-G~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~   80 (152)
T d1i36a2           2 RVGFIGFGEV-AQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (152)
T ss_dssp             EEEEESCSHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             EEEEEcHHHH-HHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHhhcccC
Confidence            6899999886 99999999999999999876532              3558899999999999754321   0000123


Q ss_pred             CeEEEEeecc
Q 022295          232 GAAVIDVGTN  241 (299)
Q Consensus       232 gavVIDvg~~  241 (299)
                      +.++||+...
T Consensus        81 ~~~~id~st~   90 (152)
T d1i36a2          81 RGIYVDINNI   90 (152)
T ss_dssp             CSEEEECSCC
T ss_pred             CceeeccCcC
Confidence            6789998754

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.82  E-value=0.00027  Score=57.47  Aligned_cols=95  Identities=15%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhhh
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPESI  207 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~~  207 (299)
                      +||.+...+..|.+..---+|.+|+|.|+++.||..+++++...|++|.++-+.                   +.++.+.
T Consensus         6 l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~   85 (183)
T d1pqwa_           6 FGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADE   85 (183)
T ss_dssp             HHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHH
Confidence            567667677776665444568999999987778999999999999987766432                   3344443


Q ss_pred             c------cCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295          208 V------READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       208 ~------~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~  241 (299)
                      +      +..|+++.++|.+.+ .--+.++++..++.+|..
T Consensus        86 v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_          86 ILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKK  126 (183)
T ss_dssp             HHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCG
T ss_pred             HHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccC
Confidence            3      348999999986543 123567888889999854

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.80  E-value=0.00098  Score=55.57  Aligned_cols=53  Identities=25%  Similarity=0.236  Sum_probs=44.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------------CCChhhhccCCcEE
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------------TTDPESIVREADIV  214 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------------t~~l~~~~~~ADIV  214 (299)
                      +|+|||.|- ||.|+|..|+++|..|+..+.+                                  +.++.+.+++||++
T Consensus         2 kI~ViGlG~-vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           2 RISIFGLGY-VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             EEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCH-hHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            689999877 5999999999999999988642                                  23566788999999


Q ss_pred             EEecCCCC
Q 022295          215 IAAAGQAM  222 (299)
Q Consensus       215 Isa~g~p~  222 (299)
                      +.+++.|.
T Consensus        81 ~i~VpTP~   88 (202)
T d1mv8a2          81 FICVGTPS   88 (202)
T ss_dssp             EECCCCCB
T ss_pred             EEecCccc
Confidence            99999874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00025  Score=57.62  Aligned_cols=95  Identities=19%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPES  206 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~  206 (299)
                      -+||...-.+..|.+..---.|.+|+|.|+++.||..+.+++...|++|+.+.+.                   +.++.+
T Consensus         8 ~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~   87 (174)
T d1yb5a2           8 AIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYID   87 (174)
T ss_dssp             TTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHH
Confidence            3677777677777554433479999999987778999999999999988776432                   233333


Q ss_pred             hc------cCCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295          207 IV------READIVIAAAGQAMMI-KGSWIKPGAAVIDVGT  240 (299)
Q Consensus       207 ~~------~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~  240 (299)
                      .+      +..|+|+.++|.+.+- --+.++++..++.+|.
T Consensus        88 ~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2          88 KIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             HHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCC
T ss_pred             HhhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEec
Confidence            32      2379999888865331 1256788888888884

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.80  E-value=0.00044  Score=59.90  Aligned_cols=43  Identities=21%  Similarity=0.350  Sum_probs=38.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChh
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPE  205 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~  205 (299)
                      .+|+||.++|.|+|.-+|+.+|..|+++||+|.++.++..++.
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~   47 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAV   47 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4789999999999998899999999999999999988765543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.78  E-value=0.00031  Score=61.12  Aligned_cols=38  Identities=26%  Similarity=0.301  Sum_probs=35.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|+||+|+|.|+++-+|+.+|..|+++|+.|.++.++
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~   39 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN   39 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999999999989999999999999999999876

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.77  E-value=0.0012  Score=52.71  Aligned_cols=55  Identities=25%  Similarity=0.405  Sum_probs=42.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCC-----------------------CCChhhhccCCcEEEEecCCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSH-----------------------TTDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~-----------------------t~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      .||+|||++|.||..+|.+|..++.  ++.+++.+                       +.+..+.+++|||||.+.|.|.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            3799999856689999999998884  56766532                       2345678999999999888653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.77  E-value=0.00084  Score=53.96  Aligned_cols=95  Identities=17%  Similarity=0.195  Sum_probs=69.6

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-------------------CCChh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-------------------TTDPE  205 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-------------------t~~l~  205 (299)
                      .+||........+++.++ -.|.+|+|+|.++.+|..+++++...|+ +|+++.++                   ..+..
T Consensus         8 ~l~c~~~Ta~~al~~~~~-~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~   86 (170)
T d1jvba2           8 PLTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPL   86 (170)
T ss_dssp             GGGTHHHHHHHHHHHTTC-CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHH
Confidence            578877777777877654 4688999999867779999998888884 88888643                   12322


Q ss_pred             hhc------cCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          206 SIV------READIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 ~~~------~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                      +.+      ...|++|-++|.+..++  -+++++|..++=+|..
T Consensus        87 ~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2          87 AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             HHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             HHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccc
Confidence            222      34899999999876544  3678998888888865

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.74  E-value=0.00045  Score=55.22  Aligned_cols=95  Identities=18%  Similarity=0.178  Sum_probs=67.9

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CC---
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TD---  203 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~---  203 (299)
                      -+||+...++..|+..++. .|.+|+|.|.|. +|...++++...|+.|+++.++.                   .+   
T Consensus         8 ~l~~~~~Ta~~al~~~~~~-~g~~vlv~G~G~-iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~   85 (168)
T d1rjwa2           8 PIFCAGVTTYKALKVTGAK-PGEWVAIYGIGG-LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAK   85 (168)
T ss_dssp             GGGTHHHHHHHHHHHHTCC-TTCEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCCEEEEeeccc-chhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhh
Confidence            4688888788888888765 588999999877 59999999999999988886431                   12   


Q ss_pred             -hhhhccCCcEEEEecCCCCcCC--CCccCCCeEEEEeeccC
Q 022295          204 -PESIVREADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       204 -l~~~~~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~~  242 (299)
                       +.+.....|.+|..++.+..+.  -+.++++..++-+|.+.
T Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~  127 (168)
T d1rjwa2          86 FMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPP  127 (168)
T ss_dssp             HHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCS
T ss_pred             hcccccCCCceEEeecCCHHHHHHHHHHhccCCceEeccccc
Confidence             2344555666666666555432  24578888888888653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00059  Score=54.06  Aligned_cols=70  Identities=13%  Similarity=0.132  Sum_probs=53.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccCCcEEEEecCCCCc---C
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVREADIVIAAAGQAMM---I  224 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g~p~~---i  224 (299)
                      ||+|||+|. +|..++..|++.|.+|+++.+...                     +..+.+..+|+||.++..+.+   +
T Consensus         2 kI~IiGaG~-iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~   80 (167)
T d1ks9a2           2 KITVLGCGA-LGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (167)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             EEEEECcCH-HHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHHH
Confidence            799999876 599999999999999999976531                     233667899999999987653   1


Q ss_pred             C--CCccCCCeEEEEee
Q 022295          225 K--GSWIKPGAAVIDVG  239 (299)
Q Consensus       225 ~--~~~vk~gavVIDvg  239 (299)
                      .  ..++.+++.|+.+.
T Consensus        81 ~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          81 KSLASTLPVTTPILLIH   97 (167)
T ss_dssp             HHHHTTSCTTSCEEEEC
T ss_pred             HhhccccCcccEEeecc
Confidence            1  24566777777763

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.73  E-value=0.00035  Score=60.74  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|+||.++|.|+|.-+|+.+|..|+++||+|.++.++
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   41 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   41 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47999999999999888999999999999999999875

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.71  E-value=0.00062  Score=54.79  Aligned_cols=79  Identities=22%  Similarity=0.297  Sum_probs=56.3

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCC---CeEEEEcCCC----------------CChhhhccCCcEEEEecCCCC--cCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKAD---ATVTIVHSHT----------------TDPESIVREADIVIAAAGQAM--MIK  225 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~g---atVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~--~i~  225 (299)
                      |-+|.|||++|.||.-+.++|.++.   ..++.+.++.                ........+.|+++.+++...  ..-
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~   80 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA   80 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHH
Confidence            5689999999999999999998884   3455554331                112245678899999887422  133


Q ss_pred             CCccCCCeEEEEeeccCCCC
Q 022295          226 GSWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       226 ~~~vk~gavVIDvg~~~~~~  245 (299)
                      ++..+.|..|||.+..+.-+
T Consensus        81 ~~~~~~~~~VIDlSsdfR~~  100 (154)
T d2gz1a1          81 PYAVKAGVVVVDNTSYFRQN  100 (154)
T ss_dssp             HHHHHTTCEEEECSSTTTTC
T ss_pred             hhhccccceehhcChhhhcc
Confidence            45567899999999876544

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.71  E-value=0.0012  Score=57.08  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=33.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+|+||.|+|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~   38 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999999999888999999999999998888543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.70  E-value=0.00057  Score=54.80  Aligned_cols=94  Identities=16%  Similarity=0.157  Sum_probs=65.0

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChh-
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPE-  205 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~-  205 (299)
                      .+||+...++..+++.++ -.|.+|+|+|.|. +|..+++++...|++|+++.++.                   .+.. 
T Consensus         8 ~l~ca~~Ta~~al~~~~~-~~g~~VlV~GaG~-vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~   85 (166)
T d1llua2           8 PILCAGVTVYKGLKQTNA-RPGQWVAISGIGG-LGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVE   85 (166)
T ss_dssp             GGGTHHHHHHHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCCEEEEeeccc-cHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHH
Confidence            478977777777877664 4689999999866 69999999999999988886542                   1222 


Q ss_pred             ---hhccCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295          206 ---SIVREADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN  241 (299)
Q Consensus       206 ---~~~~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~  241 (299)
                         +.....|.+|..++.+..+.  -+.++++-.++-+|..
T Consensus        86 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          86 AIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             HHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             HHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEec
Confidence               22334455565666555432  2567887777778864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.64  E-value=0.00051  Score=59.74  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=34.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+||.++|.|+|.-+|+.+|..|+++||+|.++.++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999999999888999999999999999999875

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.60  E-value=0.0022  Score=55.16  Aligned_cols=81  Identities=20%  Similarity=0.212  Sum_probs=57.6

Q ss_pred             ccCCHHHHHHHHHh----h--CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------Ch-h
Q 022295          147 LPCTPKGCLELLKR----S--GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------DP-E  205 (299)
Q Consensus       147 ~PcT~~av~~ll~~----~--~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------~l-~  205 (299)
                      -|.|+.|+...++.    .  .-+|+||+|+|-|.|+ ||..+|.+|.+.||+|+++..+..              +. .
T Consensus        13 ~~aTg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~Gn-VG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~   91 (230)
T d1leha1          13 SPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGN-VAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNA   91 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGG
T ss_pred             CcchHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcc
Confidence            47789998876653    2  4579999999999888 599999999999999998865421              11 1


Q ss_pred             hhccCCcEEEEecCCCCcCCCCcc
Q 022295          206 SIVREADIVIAAAGQAMMIKGSWI  229 (299)
Q Consensus       206 ~~~~~ADIVIsa~g~p~~i~~~~v  229 (299)
                      -....+||++=|.. .+.|+.+.+
T Consensus        92 ~~~~~cDIl~PcA~-~~~I~~~~~  114 (230)
T d1leha1          92 IYGVTCDIFAPCAL-GAVLNDFTI  114 (230)
T ss_dssp             TTTCCCSEEEECSC-SCCBSTTHH
T ss_pred             cccccccEeccccc-ccccChHHh
Confidence            23567899884432 344555443

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.00026  Score=56.16  Aligned_cols=71  Identities=10%  Similarity=-0.003  Sum_probs=45.1

Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCcEEEEecCCCCc--CCCCccCCCe
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREADIVIAAAGQAMM--IKGSWIKPGA  233 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~ADIVIsa~g~p~~--i~~~~vk~ga  233 (299)
                      +-+||.|.+ |++++..|.+.+..++|++|+              ..+..+.++++|+||.+++...+  +-.+.-+++.
T Consensus         2 IgfIG~G~m-g~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~~~~~   80 (153)
T d2i76a2           2 LNFVGTGTL-TRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLNLGDA   80 (153)
T ss_dssp             CEEESCCHH-HHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTTCCSSC
T ss_pred             EEEEeCcHH-HHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhhcccce
Confidence            347999886 999999887654444677754              23566889999999999974332  2223335789


Q ss_pred             EEEEeecc
Q 022295          234 AVIDVGTN  241 (299)
Q Consensus       234 vVIDvg~~  241 (299)
                      ++||++..
T Consensus        81 ivi~~s~~   88 (153)
T d2i76a2          81 VLVHCSGF   88 (153)
T ss_dssp             CEEECCSS
T ss_pred             eeeecccc
Confidence            99998754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.59  E-value=0.00047  Score=60.41  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=35.8

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+|+||.++|.|+++-+|+.+|..|+++|++|+++.++.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            368999999999988899999999999999999998763

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.59  E-value=0.00051  Score=59.47  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=35.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|+||.++|.|++.-+|+.+|..|+++||+|.++.++
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47999999999999989999999999999999999765

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.58  E-value=0.0013  Score=57.03  Aligned_cols=37  Identities=22%  Similarity=0.452  Sum_probs=34.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.++|.|+|.-+|+.+|..|+++||+|.+++++
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   38 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998888999999999999999999876

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.56  E-value=0.0012  Score=56.60  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=34.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999999998888999999999999999999876

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.56  E-value=0.00059  Score=54.49  Aligned_cols=78  Identities=21%  Similarity=0.195  Sum_probs=55.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC---CeEEEEcCCCC---------------C-hhhhccCCcEEEEecCCCC--cCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD---ATVTIVHSHTT---------------D-PESIVREADIVIAAAGQAM--MIKG  226 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g---atVtv~~~~t~---------------~-l~~~~~~ADIVIsa~g~p~--~i~~  226 (299)
                      -+|.|||++|.||+-+.++|.+++   .+++.+.+++.               + ..+...++|+++.+++...  -+-+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~~   82 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAE   82 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhcc
Confidence            379999999999999999997543   46665544321               1 1244778999999987422  2344


Q ss_pred             CccCCCeEEEEeeccCCCC
Q 022295          227 SWIKPGAAVIDVGTNAVDD  245 (299)
Q Consensus       227 ~~vk~gavVIDvg~~~~~~  245 (299)
                      ...+.|..|||.+..+..+
T Consensus        83 ~~~~~g~~VID~Ss~fR~~  101 (144)
T d2hjsa1          83 RARAAGCSVIDLSGALEPS  101 (144)
T ss_dssp             HHHHTTCEEEETTCTTTTT
T ss_pred             ccccCCceEEeechhhccc
Confidence            5567899999999877533

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.55  E-value=0.0012  Score=51.00  Aligned_cols=53  Identities=25%  Similarity=0.305  Sum_probs=41.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------CC-hhhh-ccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------TD-PESI-VREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------~~-l~~~-~~~ADIVIsa~g~p  221 (299)
                      |+++|+|.|.+ |+.++..|.++|..|++++.+.                    ++ |.+. +.+||.+|.+++..
T Consensus         1 k~~iIiG~G~~-G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           1 KQFAVIGLGRF-GGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCch
Confidence            68999999885 9999999999999999997542                    11 2233 77888888887753

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.54  E-value=0.00044  Score=60.14  Aligned_cols=38  Identities=16%  Similarity=0.212  Sum_probs=35.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   41 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999999999989999999999999999999866

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.53  E-value=0.00096  Score=54.92  Aligned_cols=95  Identities=14%  Similarity=0.108  Sum_probs=65.6

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEE-cCCccchHHHHHHHhhCCCeEEEEcCCCCChh-------------------
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVV-GRSNIVGLPVSLLLLKADATVTIVHSHTTDPE-------------------  205 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvVi-G~s~~vG~pla~lL~~~gatVtv~~~~t~~l~-------------------  205 (299)
                      -+||++.-.+..|.+..---.|.+|+|+ |+++.||..+.++....|++|..+-+......                   
T Consensus         8 ~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~   87 (189)
T d1gu7a2           8 TISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQ   87 (189)
T ss_dssp             TCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHH
T ss_pred             HhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccc
Confidence            3688888888888877655568899998 66677899999999999998876644332211                   


Q ss_pred             -----------hh----ccCCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295          206 -----------SI----VREADIVIAAAGQAMMI-KGSWIKPGAAVIDVGT  240 (299)
Q Consensus       206 -----------~~----~~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~  240 (299)
                                 +.    -..+|+++.++|.+.+- .-+.++++..++.+|.
T Consensus        88 ~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2          88 NNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             HHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCC
T ss_pred             cchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECC
Confidence                       11    12367777777755431 2255788878888874

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.0018  Score=55.73  Aligned_cols=37  Identities=19%  Similarity=0.334  Sum_probs=34.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      |+||.++|.|+|.-+|+.+|..|+++|++|.++.++.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7999999999988899999999999999999998763

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00079  Score=57.91  Aligned_cols=37  Identities=16%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      |+||.++|.|+|.-+|+.+|..|+++|++|.+++++.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            8999999999999999999999999999999998764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.48  E-value=0.001  Score=53.26  Aligned_cols=55  Identities=24%  Similarity=0.379  Sum_probs=42.1

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCC------------------------CChhhhccCCcEEEEecC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHT------------------------TDPESIVREADIVIAAAG  219 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t------------------------~~l~~~~~~ADIVIsa~g  219 (299)
                      +.++|.|||+|. ||.++|..|+.+|  .++.+++...                        .+. +.+++||+||.++|
T Consensus         4 ~~~KI~IIGaG~-VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag   81 (146)
T d1ez4a1           4 NHQKVVLVGDGA-VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAG   81 (146)
T ss_dssp             TBCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEecc
Confidence            457999999866 6999999999887  3788887441                        132 56899999999998


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      .|.
T Consensus        82 ~~~   84 (146)
T d1ez4a1          82 APQ   84 (146)
T ss_dssp             C--
T ss_pred             ccc
Confidence            764

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.47  E-value=0.0021  Score=58.38  Aligned_cols=75  Identities=13%  Similarity=0.290  Sum_probs=54.1

Q ss_pred             CCcEEEEEcCCccchHHHHHHHh-hCC-CeEEEEcCC---------------------CCChhhhccCCcEEEEecCCC-
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLL-KAD-ATVTIVHSH---------------------TTDPESIVREADIVIAAAGQA-  221 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~-~~g-atVtv~~~~---------------------t~~l~~~~~~ADIVIsa~g~p-  221 (299)
                      .-+++.|||.|.- ++.-+.++. -.+ .+|.+..++                     ..++++.++.||||+++|..+ 
T Consensus       127 da~~l~iiG~G~Q-A~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQ-SEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA  205 (340)
T ss_dssp             TCCEEEEECCSTT-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred             CCceEEEEcccHH-HHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCC
Confidence            3467788887664 665554443 233 356666543                     246789999999999988754 


Q ss_pred             --CcCCCCccCCCeEEEEeecc
Q 022295          222 --MMIKGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       222 --~~i~~~~vk~gavVIDvg~~  241 (299)
                        .+++.+|++||+.|.=+|.+
T Consensus       206 ~~Pv~~~~~l~pG~hI~aiGs~  227 (340)
T d1x7da_         206 YATIITPDMLEPGMHLNAVGGD  227 (340)
T ss_dssp             EEEEECGGGCCTTCEEEECSCC
T ss_pred             CCcccchhhcCCCCEEeecccc
Confidence              37899999999999999975

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.46  E-value=0.0024  Score=51.04  Aligned_cols=54  Identities=26%  Similarity=0.444  Sum_probs=41.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-----------------------------CChhhhccCCcEEEEe
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-----------------------------TDPESIVREADIVIAA  217 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-----------------------------~~l~~~~~~ADIVIsa  217 (299)
                      ||+|||++|.||..+|.+|+.++.  ++.+.+.+.                             .+..+.+++|||||.+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVit   81 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIIT   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEEe
Confidence            699999866689999999999883  777775320                             1234678899999999


Q ss_pred             cCCCC
Q 022295          218 AGQAM  222 (299)
Q Consensus       218 ~g~p~  222 (299)
                      +|.|.
T Consensus        82 AG~~~   86 (145)
T d1hyea1          82 SGVPR   86 (145)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            99764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.46  E-value=0.00063  Score=58.79  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|.||.|+|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            6999999999999989999999999999999987544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.44  E-value=0.0028  Score=50.60  Aligned_cols=86  Identities=20%  Similarity=0.306  Sum_probs=62.6

Q ss_pred             HHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------------CChh---hhc--
Q 022295          155 LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------------TDPE---SIV--  208 (299)
Q Consensus       155 ~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------------~~l~---~~~--  208 (299)
                      ++.+++.++ -.|.+|+|+|.|. +|...++++...|++|+++.++.                     .+..   +.+  
T Consensus        16 ~~a~~~~~~-~~g~~vlV~G~G~-vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          16 VHACRRAGV-QLGTTVLVIGAGP-IGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCEEEEEcccc-cchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhc
Confidence            556666664 4688999999766 69999999999999999886541                     1111   111  


Q ss_pred             ---cCCcEEEEecCCCCcCC--CCccCCCeEEEEeeccC
Q 022295          209 ---READIVIAAAGQAMMIK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       209 ---~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~~  242 (299)
                         ..+|+||-++|.+..+.  -++++++..++=+|...
T Consensus        94 ~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          94 AIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             HSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             ccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCC
Confidence               34899999999887543  36789988888888654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0022  Score=53.94  Aligned_cols=56  Identities=20%  Similarity=0.290  Sum_probs=47.0

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC---------------------CChhhhccCCcEEEEecCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT---------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      .++|+|+|.|++|.+|+.++..|+++|.  +|++..|+.                     .++.+.++.+|++|.++|.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            6789999999999999999999999884  788887652                     2355778899999998875

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.44  E-value=0.00076  Score=57.88  Aligned_cols=39  Identities=21%  Similarity=0.328  Sum_probs=35.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      .|+||+++|.|+|.-+|+.+|..|+++|++|.++.++.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            479999999999998999999999999999999987643

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.44  E-value=0.0024  Score=51.24  Aligned_cols=56  Identities=21%  Similarity=0.331  Sum_probs=43.0

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC-------------------------CChhhhccCCcEEEEecCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT-------------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      ..||+|||+|. ||..+|.+|..++ +.+.+++.+.                         .+..+.+++||+||.+.|.
T Consensus         3 ~~KI~IIGaG~-VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~   81 (150)
T d1t2da1           3 KAKIVLVGSGM-IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF   81 (150)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred             CCeEEEECCCH-HHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccc
Confidence            36899999765 6999999998888 4777776431                         1335789999999999997


Q ss_pred             CCc
Q 022295          221 AMM  223 (299)
Q Consensus       221 p~~  223 (299)
                      |..
T Consensus        82 ~~~   84 (150)
T d1t2da1          82 TKA   84 (150)
T ss_dssp             SSC
T ss_pred             ccC
Confidence            643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0035  Score=50.32  Aligned_cols=86  Identities=21%  Similarity=0.386  Sum_probs=62.0

Q ss_pred             HHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-------------------CChhhhc------
Q 022295          155 LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-------------------TDPESIV------  208 (299)
Q Consensus       155 ~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-------------------~~l~~~~------  208 (299)
                      ++.+++.++ -.|.+|+|+|.|. +|...++++...|+ .|+++.++.                   .+..+..      
T Consensus        16 ~~a~~~~~~-~~gd~VlI~G~G~-iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~   93 (171)
T d1pl8a2          16 IHACRRGGV-TLGHKVLVCGAGP-IGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQ   93 (171)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCEEEEECCCc-cHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCccccccccccccccccccccc
Confidence            455666665 3588999999866 59999999999999 688876541                   2222211      


Q ss_pred             --cCCcEEEEecCCCCcCC--CCccCCCeEEEEeeccC
Q 022295          209 --READIVIAAAGQAMMIK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       209 --~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~~  242 (299)
                        ..+|+||-++|.+..+.  -+++++|..++=+|...
T Consensus        94 ~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          94 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             CCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence              35899999999887543  36788887777788754

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.43  E-value=0.0018  Score=51.76  Aligned_cols=56  Identities=25%  Similarity=0.437  Sum_probs=43.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC------------------------CChhhhccCCcEEEEecC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT------------------------TDPESIVREADIVIAAAG  219 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t------------------------~~l~~~~~~ADIVIsa~g  219 (299)
                      .++||.|||+|. ||..+|..|+.++-  ++.+++.+.                        .+-.+.+++||+||.++|
T Consensus         5 ~~~KI~IiGaG~-vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           5 GGARVVVIGAGF-VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TSCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCeEEEECcCH-HHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            578999999866 69999999998873  688886431                        122377999999999988


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      .|.
T Consensus        84 ~~~   86 (148)
T d1ldna1          84 ANQ   86 (148)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.00061  Score=58.65  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=35.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +|+||.++|.|+|.-+|+.+|..|+++|++|.++.++.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            68999999999999899999999999999999998763

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.39  E-value=0.0014  Score=53.70  Aligned_cols=53  Identities=17%  Similarity=0.278  Sum_probs=44.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-----------------------------CCChhhhccCCcEEEEecC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-----------------------------TTDPESIVREADIVIAAAG  219 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-----------------------------t~~l~~~~~~ADIVIsa~g  219 (299)
                      +|.|||+|.. |..+|..|.+.|.+|++..+.                             +.++.+.+++||+||.|++
T Consensus         2 kI~ViGaG~~-GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAM-GSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHH-HHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            6899998775 999999999999999987541                             2356788999999999998


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      ...
T Consensus        81 s~~   83 (180)
T d1txga2          81 TDG   83 (180)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            644

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00061  Score=59.24  Aligned_cols=37  Identities=27%  Similarity=0.439  Sum_probs=34.7

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      |+||+++|.|+|.-+|+.+|..|+++|++|.++.++.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            8999999999999899999999999999999998763

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.37  E-value=0.0023  Score=50.77  Aligned_cols=54  Identities=15%  Similarity=0.311  Sum_probs=40.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC-------------------------CChhhhccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT-------------------------TDPESIVREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~p  221 (299)
                      ++|.|||+|. ||.++|.+|+.++ +++.+.+...                         .+-.+.+++||+||.++|.|
T Consensus         2 ~KI~IIGaG~-VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGF-VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCH-HHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeecc
Confidence            6899999866 6999999998887 5777776321                         01235689999999999876


Q ss_pred             C
Q 022295          222 M  222 (299)
Q Consensus       222 ~  222 (299)
                      .
T Consensus        81 ~   81 (142)
T d1uxja1          81 R   81 (142)
T ss_dssp             -
T ss_pred             C
Confidence            3

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0018  Score=53.46  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=32.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..++|+|+|||+|.+ |...|..|.++|.+|+++.+.
T Consensus        40 ~~~~k~V~IIGaGPA-GL~AA~~la~~G~~Vtl~E~~   75 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPA-GLAFAINAAARGHQVTLFDAH   75 (179)
T ss_dssp             CSSCCEEEEECCSHH-HHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCcEEEEECccHH-HHHHHHHHHhhccceEEEecc
Confidence            357899999998887 999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0027  Score=52.71  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=28.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      |+|.|||+|-+ |..+|.+++..|.+|+++++.
T Consensus         5 kkvaViGaG~m-G~~iA~~~a~~G~~V~l~D~~   36 (192)
T d1f0ya2           5 KHVTVIGGGLM-GAGIAQVAAATGHTVVLVDQT   36 (192)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEECcCHH-HHHHHHHHHhCCCcEEEEECC
Confidence            79999998775 999999999999999999643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.36  E-value=0.0014  Score=56.22  Aligned_cols=38  Identities=32%  Similarity=0.515  Sum_probs=33.0

Q ss_pred             CCcCCcEEEEEcCCc--cchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSN--IVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~--~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|+||.++|.|+|+  -+|+.+|..|+++||+|.++.+.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~   43 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA   43 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            589999999999863  24999999999999999888754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.36  E-value=0.0014  Score=53.42  Aligned_cols=94  Identities=14%  Similarity=0.017  Sum_probs=66.4

Q ss_pred             ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhh-
Q 022295          147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPES-  206 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~-  206 (299)
                      ++|+....+..|.+..---+|.+|+|.|+++.||..++++....||+|+...++                   +.+..+ 
T Consensus        10 lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~   89 (182)
T d1v3va2          10 IGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEE   89 (182)
T ss_dssp             TSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHH
T ss_pred             HhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHH
Confidence            566666677777665544579999999999999999999999999988876543                   122111 


Q ss_pred             ---h--ccCCcEEEEecCCCCc-CCCCccCCCeEEEEeec
Q 022295          207 ---I--VREADIVIAAAGQAMM-IKGSWIKPGAAVIDVGT  240 (299)
Q Consensus       207 ---~--~~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~  240 (299)
                         .  -+..|+|+.++|.+.+ -..+.++++..++-+|.
T Consensus        90 ~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          90 ALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             HHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCC
T ss_pred             HHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecc
Confidence               1  2347888888885433 23456788878887874

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.32  E-value=0.0017  Score=56.14  Aligned_cols=36  Identities=14%  Similarity=0.281  Sum_probs=33.8

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      |+||.++|.|+|.-+|+.+|..|+++||+|.++.++
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   37 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   37 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999999888999999999999999999865

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.27  E-value=0.00095  Score=57.97  Aligned_cols=38  Identities=21%  Similarity=0.344  Sum_probs=34.6

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~   51 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN   51 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            45999999999998889999999999999999998655

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.26  E-value=0.0017  Score=52.69  Aligned_cols=96  Identities=19%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCC-------------------CCChh
Q 022295          146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSH-------------------TTDPE  205 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~-------------------t~~l~  205 (299)
                      .++|.....+..+.+..-.-.|.+|+|+|.|. +|...++++...|+. |+++.++                   ..+..
T Consensus         8 pl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~-iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~   86 (174)
T d1f8fa2           8 PLGCGIQTGAGACINALKVTPASSFVTWGAGA-VGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPV   86 (174)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEESCSH-HHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCH-HHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHH
Confidence            46886666666655544445799999999876 599999999888875 4555432                   23444


Q ss_pred             hhccC-----CcEEEEecCCCCcCC--CCccCCCeEEEEeeccC
Q 022295          206 SIVRE-----ADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       206 ~~~~~-----ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~~  242 (299)
                      +.+++     +|+||-++|.+..+.  -+.++++-.++=+|...
T Consensus        87 ~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~  130 (174)
T d1f8fa2          87 AAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQ  130 (174)
T ss_dssp             HHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCS
T ss_pred             HHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecC
Confidence            43332     799999999876542  36678887777777643

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.24  E-value=0.0031  Score=49.73  Aligned_cols=53  Identities=23%  Similarity=0.359  Sum_probs=41.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCC-------------------------CChhhhccCCcEEEEecCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHT-------------------------TDPESIVREADIVIAAAGQA  221 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~p  221 (299)
                      ||.|||+|. ||.+++..|+..+  -++.+++.+.                         .+..+.+++||+||.++|.|
T Consensus         2 KI~IIGaG~-VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           2 KITVIGAGN-VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            689999866 6999999999887  3788887442                         13347789999999998865


Q ss_pred             C
Q 022295          222 M  222 (299)
Q Consensus       222 ~  222 (299)
                      .
T Consensus        81 ~   81 (142)
T d1guza1          81 R   81 (142)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.23  E-value=0.0019  Score=56.03  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=32.9

Q ss_pred             CCCcCCcEEEEEcCC---ccchHHHHHHHhhCCCeEEEEcC
Q 022295          162 GVTIKGKRAVVVGRS---NIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       162 ~~~l~gk~vvViG~s---~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      .++|+||+++|.|+|   ++ |+.+|..|+++||+|.++.+
T Consensus         3 ~~~L~gK~alVTGass~~GI-G~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGY-GWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSH-HHHHHHHHHHTTCEEEEEEE
T ss_pred             CcCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEeC
Confidence            368999999999986   55 99999999999999998864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.21  E-value=0.0011  Score=58.00  Aligned_cols=37  Identities=16%  Similarity=0.341  Sum_probs=34.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.++|.|+|.-+|+.+|..|+++||+|.++.++
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998888999999999999999999876

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.20  E-value=0.0025  Score=50.92  Aligned_cols=54  Identities=22%  Similarity=0.382  Sum_probs=40.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC-C-eEEEEcCCC------------------------CChhhhccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD-A-TVTIVHSHT------------------------TDPESIVREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g-a-tVtv~~~~t------------------------~~l~~~~~~ADIVIsa~g~p  221 (299)
                      |||.|||+|. ||..+|..|+.+| + ++.+++...                        .+-.+.+++||+||.++|.|
T Consensus         2 kKI~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGN-VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCH-HHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence            7999999866 6999999888877 3 677776431                        01236789999999888865


Q ss_pred             C
Q 022295          222 M  222 (299)
Q Consensus       222 ~  222 (299)
                      .
T Consensus        81 ~   81 (146)
T d1hyha1          81 K   81 (146)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.19  E-value=0.0037  Score=53.54  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=34.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~   38 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLV   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999999888999999999999999999865

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0012  Score=52.96  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=52.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhC-C---CeEEEEcCCCC---------------Ch--hhhccCCcEEEEecCCC--CcC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA-D---ATVTIVHSHTT---------------DP--ESIVREADIVIAAAGQA--MMI  224 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~-g---atVtv~~~~t~---------------~l--~~~~~~ADIVIsa~g~p--~~i  224 (299)
                      |+|.|||++|.||+-+..+|+++ +   .+++...+.+.               ++  .+..++.|++|.|++.-  .-+
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~~   81 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEI   81 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHHh
Confidence            58999999999999988755544 2   46665654321               11  13568899999999742  223


Q ss_pred             CCCccCCC--eEEEEeeccCCCC
Q 022295          225 KGSWIKPG--AAVIDVGTNAVDD  245 (299)
Q Consensus       225 ~~~~vk~g--avVIDvg~~~~~~  245 (299)
                      -+...+.|  .+|||.+..+.-+
T Consensus        82 ~~~~~~~g~~~~VID~Ss~fR~~  104 (146)
T d1t4ba1          82 YPKLRESGWQGYWIDAASSLRMK  104 (146)
T ss_dssp             HHHHHHTTCCCEEEECSSTTTTC
T ss_pred             hHHHHhcCCCeecccCCcccccC
Confidence            34445555  6899999876533

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0014  Score=56.72  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=35.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -.|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45899999999998888999999999999999999876

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.00096  Score=57.78  Aligned_cols=38  Identities=21%  Similarity=0.423  Sum_probs=35.1

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..|+||.++|.|+|.-+|+.+|..|+++||.|.++.++
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   44 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            45899999999999989999999999999999999865

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.12  E-value=0.00095  Score=57.70  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=34.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998889999999999999999999876

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0013  Score=56.71  Aligned_cols=38  Identities=11%  Similarity=0.248  Sum_probs=35.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +|+||.++|.|+|.-+|+.+|..|+++|++|.++.++.
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999899999999999999999998764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.10  E-value=0.0013  Score=57.15  Aligned_cols=37  Identities=22%  Similarity=0.351  Sum_probs=34.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999999889999999999999999999865

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.10  E-value=0.0059  Score=49.49  Aligned_cols=57  Identities=21%  Similarity=0.381  Sum_probs=44.1

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC------------------------CChhhhccCCcEEEEec
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT------------------------TDPESIVREADIVIAAA  218 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t------------------------~~l~~~~~~ADIVIsa~  218 (299)
                      +..++|.|||+|. ||..+|..|..+|.  ++.+++.+.                        ..-.+.+++|||||.++
T Consensus        18 ~~~~KV~IIGaG~-VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          18 VPNNKITVVGVGQ-VGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCSSEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             CCCCeEEEECCCH-HHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            4568999999866 69999999999984  688886431                        12246789999999988


Q ss_pred             CCCC
Q 022295          219 GQAM  222 (299)
Q Consensus       219 g~p~  222 (299)
                      |.|.
T Consensus        97 g~~~  100 (160)
T d1i0za1          97 GVRQ  100 (160)
T ss_dssp             SCCC
T ss_pred             CCcc
Confidence            8764

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.002  Score=57.39  Aligned_cols=92  Identities=15%  Similarity=0.246  Sum_probs=72.9

Q ss_pred             CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHh----hCCC-------eEEEEcCC------------------
Q 022295          150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL----KADA-------TVTIVHSH------------------  200 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~----~~ga-------tVtv~~~~------------------  200 (299)
                      |-.|++..|+-.+.+|+..++++.|+|.. |-.++.+|.    +.|.       .+++++++                  
T Consensus         8 ~lAglinAlki~gk~l~d~kiv~~GAGsA-g~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~   86 (294)
T d1pj3a1           8 ALAGLLAAQKVISKPISEHKILFLGAGEA-ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPF   86 (294)
T ss_dssp             HHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGG
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEECccHH-HHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHh
Confidence            45678999999999999999999999987 888888764    3343       38888764                  


Q ss_pred             --------CCChhhhcc--CCcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295          201 --------TTDPESIVR--EADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV  243 (299)
Q Consensus       201 --------t~~l~~~~~--~ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~  243 (299)
                              ..+|.+.++  ++|++|...|.++++++++++      +.-+|+=++ ||.
T Consensus        87 a~~~~~~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLS-NPt  144 (294)
T d1pj3a1          87 THSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS-NPT  144 (294)
T ss_dssp             CBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hccccccchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEcc-CCC
Confidence                    013556655  789999999999999999986      788888887 553

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.08  E-value=0.0013  Score=56.64  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=34.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~   39 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   39 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999998888999999999999999999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.06  E-value=0.0011  Score=57.17  Aligned_cols=40  Identities=20%  Similarity=0.182  Sum_probs=36.1

Q ss_pred             hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +-.+|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         4 ~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~   43 (251)
T d2c07a1           4 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT   43 (251)
T ss_dssp             CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            3467899999999998888999999999999999999875

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.04  E-value=0.0038  Score=53.50  Aligned_cols=37  Identities=22%  Similarity=0.396  Sum_probs=32.4

Q ss_pred             cCCcEEEEEcCCc--cchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSN--IVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~--~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      |+||+++|.|+++  -+|+.+|..|+++|++|+++.++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            7999999999753  259999999999999999998763

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.02  E-value=0.0028  Score=52.11  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ||+|+|||+|-. |-..|..|+++|..|+|+.+.
T Consensus         1 ~KkV~IIGaG~a-GL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVS-GLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHH-HHHHHHHHHhCCCCEEEEeCC
Confidence            799999998887 999999999999999999864

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.99  E-value=0.0012  Score=57.50  Aligned_cols=37  Identities=27%  Similarity=0.428  Sum_probs=34.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~   38 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRS   38 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999999989999999999999999999765

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0015  Score=56.46  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=34.5

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.|+|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~   43 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCART   43 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3899999999999999999999999999999999865

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.98  E-value=0.0053  Score=48.74  Aligned_cols=54  Identities=22%  Similarity=0.404  Sum_probs=41.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC------------------------CChhhhccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT------------------------TDPESIVREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t------------------------~~l~~~~~~ADIVIsa~g~p  221 (299)
                      .||.|||+|. ||..+|..|..++.  ++.+++.+.                        .+-.+.+++||+||.++|.|
T Consensus         2 ~Ki~IIGaG~-VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGA-VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence            4799999866 69999999998884  677776431                        12236799999999999976


Q ss_pred             C
Q 022295          222 M  222 (299)
Q Consensus       222 ~  222 (299)
                      .
T Consensus        81 ~   81 (143)
T d1llda1          81 Q   81 (143)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0016  Score=57.58  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=34.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -|+||.++|.|+|.-+|+.+|..|+++||+|.++.++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~   45 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRK   45 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3899999999999989999999999999999999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.93  E-value=0.0013  Score=56.89  Aligned_cols=37  Identities=32%  Similarity=0.473  Sum_probs=34.3

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRH   38 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999999999889999999999999999999875

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.92  E-value=0.0067  Score=47.99  Aligned_cols=54  Identities=15%  Similarity=0.356  Sum_probs=39.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-----------------------CChhhhccCCcEEEEecCCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-----------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-----------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      ++|+|||+|. ||..+|..|+.++-  ++.+++...                       ..-.+.+++||+||.+.|.|.
T Consensus         2 ~KI~IIGaG~-VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~   80 (142)
T d1y6ja1           2 SKVAIIGAGF-VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   80 (142)
T ss_dssp             CCEEEECCSH-HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CeEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEeccccc
Confidence            4799999866 69999999998873  688886431                       112367889999998888653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.91  E-value=0.0044  Score=48.89  Aligned_cols=53  Identities=23%  Similarity=0.362  Sum_probs=40.3

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCC-----------------------CChhhhccCCcEEEEecCCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHT-----------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t-----------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      |+.|||+|. ||.++|..|+.++  .++.+++.+.                       .+..+.+++||+||.++|.|.
T Consensus         2 KI~IIGaG~-VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~   79 (140)
T d1a5za1           2 KIGIVGLGR-VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQ   79 (140)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccccc
Confidence            789999866 6999999888777  3677776431                       122467999999999999764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.91  E-value=0.0014  Score=56.66  Aligned_cols=37  Identities=38%  Similarity=0.485  Sum_probs=34.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~   39 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3899999999999888999999999999999999865

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.87  E-value=0.011  Score=45.12  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +-++|+|+|||+|- +|.-+|..|.+.|..||+.++..
T Consensus        27 ~~~~k~vvViGgG~-iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          27 DPEVNNVVVIGSGY-IGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             CTTCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSS
T ss_pred             ccCCCEEEEECChH-HHHHHHHHhhccceEEEEEEecC
Confidence            45689999999766 59999999999999999998754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.86  E-value=0.0018  Score=56.15  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=34.4

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~   40 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS   40 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6999999999998888999999999999999998765

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.85  E-value=0.0027  Score=51.13  Aligned_cols=95  Identities=18%  Similarity=0.223  Sum_probs=66.4

Q ss_pred             cccCCHHHHHHHHHhhCCCc-CCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC------------------CC-h
Q 022295          146 FLPCTPKGCLELLKRSGVTI-KGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT------------------TD-P  204 (299)
Q Consensus       146 ~~PcT~~av~~ll~~~~~~l-~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t------------------~~-l  204 (299)
                      .+||...-.++.|++.+..+ .|..|+|+|.|+ +|...++++...|+ +|+++.++.                  .+ .
T Consensus        11 ~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~-vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~   89 (172)
T d1h2ba2          11 PLADAGITAYRAVKKAARTLYPGAYVAIVGVGG-LGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPV   89 (172)
T ss_dssp             GGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSH-HHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHH
T ss_pred             HHHhHHHHHHHHHHHhhhccCCCCEEEEeCCCh-HHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHH
Confidence            46787777788888776544 589999999877 59998888888886 666665431                  11 2


Q ss_pred             hhhc-----cCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295          205 ESIV-----READIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN  241 (299)
Q Consensus       205 ~~~~-----~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~  241 (299)
                      ++..     ..+|+||.++|.+..+  .-+.+++|..++=+|..
T Consensus        90 ~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2          90 KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             HHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCS
T ss_pred             HHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCc
Confidence            2111     2379999999987643  34667888777778853

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.83  E-value=0.012  Score=47.69  Aligned_cols=53  Identities=19%  Similarity=0.174  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      |++..+..|.+.+...+|..|+|-|+++-||..+.++....||+|+...+...
T Consensus         7 TA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~   59 (167)
T d1tt7a2           7 TAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE   59 (167)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHH
Confidence            56666777888888788889999999888999999999999999887766543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.81  E-value=0.0085  Score=52.80  Aligned_cols=57  Identities=19%  Similarity=0.153  Sum_probs=45.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-----------------------------CCChhhhccCCcEEE
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-----------------------------TTDPESIVREADIVI  215 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-----------------------------t~~l~~~~~~ADIVI  215 (299)
                      -+||+|+|.|++|.+|..++..|+++|++|..+-++                             ...+.+.++.+|.|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            469999999999999999999999999999876432                             112446788899998


Q ss_pred             EecCCC
Q 022295          216 AAAGQA  221 (299)
Q Consensus       216 sa~g~p  221 (299)
                      ...+..
T Consensus        89 ~~a~~~   94 (342)
T d1y1pa1          89 HIASVV   94 (342)
T ss_dssp             ECCCCC
T ss_pred             hhcccc
Confidence            666543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.0072  Score=53.42  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=33.9

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ..|+||.++|-|+|.-+|+.+|..|+++||+|.++.+
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~   39 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL   39 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            3589999999999999999999999999999999864

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.79  E-value=0.002  Score=51.12  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=48.3

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC---------------CChhhhccCCcEEEEecCCCCc---CCCCcc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT---------------TDPESIVREADIVIAAAGQAMM---IKGSWI  229 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~~---i~~~~v  229 (299)
                      ++.+||.|.+ |.+++..|.+.| ..|++++++.               .+. +.++++|+||.|+. |..   +-.+..
T Consensus         2 kI~fIG~G~M-G~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~-~~v~~~Div~lavk-P~~~~~v~~~l~   78 (152)
T d1yqga2           2 NVYFLGGGNM-AAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATL-PELHSDDVLILAVK-PQDMEAACKNIR   78 (152)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSC-CCCCTTSEEEECSC-HHHHHHHHTTCC
T ss_pred             EEEEEcCcHH-HHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccc-ccccccceEEEecC-HHHHHHhHHHHh
Confidence            6899999886 999999877766 7899998752               122 45778999999986 432   112333


Q ss_pred             CCCeEEEEeec
Q 022295          230 KPGAAVIDVGT  240 (299)
Q Consensus       230 k~gavVIDvg~  240 (299)
                      ..+.++|.+..
T Consensus        79 ~~~~~viS~~a   89 (152)
T d1yqga2          79 TNGALVLSVAA   89 (152)
T ss_dssp             CTTCEEEECCT
T ss_pred             hcccEEeeccc
Confidence            34678887653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.79  E-value=0.0066  Score=51.11  Aligned_cols=53  Identities=15%  Similarity=0.273  Sum_probs=43.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh------hhhcc--CCcEEEEecCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP------ESIVR--EADIVIAAAGQA  221 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l------~~~~~--~ADIVIsa~g~p  221 (299)
                      +|+|.|++|.+|+.++..|.++|.+|+.++++.-|+      .+.++  +.|+||.+.+..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~~~   63 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT   63 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHHHcCCCEEEeecccc
Confidence            699999999999999999999999999998775443      34554  569999887754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.0067  Score=49.10  Aligned_cols=57  Identities=23%  Similarity=0.407  Sum_probs=43.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC------------------------CChhhhccCCcEEEEec
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT------------------------TDPESIVREADIVIAAA  218 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t------------------------~~l~~~~~~ADIVIsa~  218 (299)
                      ++..+|.|||+|. ||..+|.+|..++.  .+.+++.+.                        .+-.+.+++|||||.+.
T Consensus        17 ~~~~KI~IIGaG~-VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita   95 (159)
T d2ldxa1          17 LSRCKITVVGVGD-VGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCEEEEECCSH-HHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred             CCCCeEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence            4556899999866 69999999998873  688886431                        11236789999999999


Q ss_pred             CCCC
Q 022295          219 GQAM  222 (299)
Q Consensus       219 g~p~  222 (299)
                      |.|.
T Consensus        96 g~~~   99 (159)
T d2ldxa1          96 GARM   99 (159)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            8764

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.01  Score=48.46  Aligned_cols=52  Identities=31%  Similarity=0.321  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      |++-.+.-|++.+...++.+|+|.|+++-||....+++...||+|+.+.+..
T Consensus        15 TA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~   66 (177)
T d1o89a2          15 TAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE   66 (177)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             HHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecch
Confidence            5555566677888888888999999999999999999999999988766554

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0051  Score=47.20  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      -|+++|||.|- +|--+|..|.+.|..||++++..
T Consensus        22 pk~vvIvGgG~-iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGY-IAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSH-HHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCc-cHHHHHHHHhcCCcEEEEEeecc
Confidence            38999999766 59999999999999999999764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0022  Score=55.19  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=33.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   36 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   36 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            479999999998888999999999999999999865

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.056  Score=47.79  Aligned_cols=187  Identities=13%  Similarity=0.115  Sum_probs=116.4

Q ss_pred             eeeccHHHHHHHHHHHHHHHHHHHhcCCCCc-----EEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCH--
Q 022295           10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVP-----GLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSE--   82 (299)
Q Consensus        10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P-----~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~--   82 (299)
                      .+|+-+.+.++=.+.|-+...++|+.. ..+     .++.+  =+.|+-+.-+ +=..++.++|.++..+..+.+.+.  
T Consensus         8 ~~l~~~dls~~ei~~ll~~A~~~K~~~-~~~~l~gk~iall--F~kpSTRTR~-SFe~A~~~LGg~~i~~~~~~~~~~~~   83 (310)
T d1tuga1           8 HIISINDLSRDDLNLVLATAAKLKANP-QPELLKHKVIASC--FFAASTRTRL-SFETSMHRLGASVVGFSDSANTSLGK   83 (310)
T ss_dssp             CBCCGGGCCHHHHHHHHHHHHHHHHSC-CTTTTTTCEEEEE--ESSCCHHHHH-HHHHHHHHTTCEEEEEECCSSCHHHH
T ss_pred             CcCChhhCCHHHHHHHHHHHHHHhcCC-CccccCCCEEEEE--ecCCCcchhh-hHHHHHHHhccccccccccccccccC
Confidence            456656665544455555556665542 121     23333  3345444444 457899999999887765544432  


Q ss_pred             --HHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHH
Q 022295           83 --AELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLK  159 (299)
Q Consensus        83 --~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~  159 (299)
                        |-+.+.++-|+.-  +++|++-.+  .+-........   .   ..+-.+|.|-      .+.+.||=+.+ ++.+.+
T Consensus        84 kgEsi~Dt~~vls~~--~d~iv~R~~--~~~~~~~~~~~---~---~~vPVINAg~------~~~~HP~Q~LaD~~Ti~e  147 (310)
T d1tuga1          84 KGETLADTISVISTY--VDAIVMRHP--QEGAARLATEF---S---GNVPVLNAGD------GSNQHPTQTLLDLFTIQE  147 (310)
T ss_dssp             TSCCHHHHHHHHTTT--CSEEEEEES--SBTHHHHHTTT---C---TTSCEEEEEE------TTSCCHHHHHHHHHHHHH
T ss_pred             CCccHHHhhhHhhhc--chheeeech--hhhhhHHHHHh---c---cCccEEECCC------CcccchHHHHHHHHHHHH
Confidence              4577788888764  788998765  33322222111   1   1133456531      23468998888 555555


Q ss_pred             hhCCCcCCcEEEEEcC--CccchHHHHHHHhhCC-CeEEEEcCC---------------------CCChhhhccCCcEEE
Q 022295          160 RSGVTIKGKRAVVVGR--SNIVGLPVSLLLLKAD-ATVTIVHSH---------------------TTDPESIVREADIVI  215 (299)
Q Consensus       160 ~~~~~l~gk~vvViG~--s~~vG~pla~lL~~~g-atVtv~~~~---------------------t~~l~~~~~~ADIVI  215 (299)
                      +.| +++|++++.+|-  .+.|...++.++...+ ..+++|+..                     +.++.+.+++||+|.
T Consensus       148 ~~g-~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy  226 (310)
T d1tuga1         148 TQG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILY  226 (310)
T ss_dssp             HHS-CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEE
T ss_pred             HcC-CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceee
Confidence            555 699999999996  2335778888788775 689988632                     246778899999988


Q ss_pred             Ee
Q 022295          216 AA  217 (299)
Q Consensus       216 sa  217 (299)
                      +-
T Consensus       227 ~~  228 (310)
T d1tuga1         227 MT  228 (310)
T ss_dssp             EC
T ss_pred             ec
Confidence            54

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.76  E-value=0.0017  Score=56.55  Aligned_cols=36  Identities=31%  Similarity=0.506  Sum_probs=33.8

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      |+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   37 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN   37 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999999889999999999999999999765

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.71  E-value=0.0052  Score=50.56  Aligned_cols=72  Identities=28%  Similarity=0.491  Sum_probs=51.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC---------------------CChhhhccCCcEEEEecCCCC---c
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT---------------------TDPESIVREADIVIAAAGQAM---M  223 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~---~  223 (299)
                      +|.|+|++|.||+-+.++|.++- .++..+.+++                     .+..+...++|+|+.|++.-.   +
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~~~   82 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASYDL   82 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHHHH
Confidence            79999999999999999998764 4555553331                     123345567999999988532   2


Q ss_pred             CCCCccCCCeEEEEeeccCC
Q 022295          224 IKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       224 i~~~~vk~gavVIDvg~~~~  243 (299)
                      +..   ..+..|||.+..+.
T Consensus        83 ~~~---~~~~~VIDlSadfR   99 (176)
T d1vkna1          83 VRE---LKGVKIIDLGADFR   99 (176)
T ss_dssp             HTT---CCSCEEEESSSTTT
T ss_pred             HHh---hccceEEecCcccc
Confidence            332   14789999998764

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.70  E-value=0.01  Score=47.69  Aligned_cols=55  Identities=31%  Similarity=0.431  Sum_probs=47.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCcEEEEec
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      +|+|++|++||-+..|.+.++.+|..-|+++++|.-.                         +.++.+.++.||+|.+-.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            4799999999999999999999999999999999632                         246678899999999654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.68  E-value=0.0034  Score=53.46  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             cCCcEEEEEcCC---ccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRS---NIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s---~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      |+||+++|.|++   ++ |+.+|..|+++||+|.++.++
T Consensus         4 l~gK~~lItGaag~~GI-G~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSI-AFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTTCEEEECCCSSTTCH-HHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCEEEEECCCCCCHH-HHHHHHHHHHcCCEEEEEeCC
Confidence            799999999953   44 999999999999999998765

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.0026  Score=52.18  Aligned_cols=94  Identities=17%  Similarity=0.161  Sum_probs=60.5

Q ss_pred             ccCCHHHHHHHHHhhCCCcCC--cEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCC--------------------CCC
Q 022295          147 LPCTPKGCLELLKRSGVTIKG--KRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSH--------------------TTD  203 (299)
Q Consensus       147 ~PcT~~av~~ll~~~~~~l~g--k~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~--------------------t~~  203 (299)
                      +|++..-.+..|.+.+---.|  +.|+|-|+++.||..+.+++...||+ |+.+.+.                    +++
T Consensus         9 lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~   88 (187)
T d1vj1a2           9 IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGN   88 (187)
T ss_dssp             TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSC
T ss_pred             hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchh
Confidence            456566666666655433334  78999998777899999998889985 4433322                    234


Q ss_pred             hhhhccC-----CcEEEEecCCCCc-CCCCccCCCeEEEEeec
Q 022295          204 PESIVRE-----ADIVIAAAGQAMM-IKGSWIKPGAAVIDVGT  240 (299)
Q Consensus       204 l~~~~~~-----ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~  240 (299)
                      +.+.+++     +|+|+-++|.+.+ -..+.++++-.++-+|.
T Consensus        89 ~~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2          89 VAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             HHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC--
T ss_pred             HHHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEecc
Confidence            4444443     7888888876543 23456777777777774

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0091  Score=47.43  Aligned_cols=54  Identities=22%  Similarity=0.393  Sum_probs=38.9

Q ss_pred             EEEEEcCCccchHHHHHHHh-hCC--CeEEEEcCCC-----------------------CChhhhccCCcEEEEecCCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLL-KAD--ATVTIVHSHT-----------------------TDPESIVREADIVIAAAGQAM  222 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~-~~g--atVtv~~~~t-----------------------~~l~~~~~~ADIVIsa~g~p~  222 (299)
                      ||+|||++|.||..+|.+|. +.+  .++.+.+...                       .+..+.+++||+||.+.|.|.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~~   81 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVRR   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCCC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCccC
Confidence            68999976668999998875 333  4677775321                       223467899999999999763

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.64  E-value=0.0027  Score=54.74  Aligned_cols=36  Identities=31%  Similarity=0.408  Sum_probs=33.6

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      |+||.++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~   37 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG   37 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            689999999999988999999999999999999765

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.64  E-value=0.0028  Score=50.82  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC----CeEEEEcCCC-----------------CChhhhccCCcEEEEecCCC--CcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD----ATVTIVHSHT-----------------TDPESIVREADIVIAAAGQA--MMIK  225 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g----atVtv~~~~t-----------------~~l~~~~~~ADIVIsa~g~p--~~i~  225 (299)
                      +|.|||++|.||+-+.++|+++.    .++....+++                 ..-.+..+++|++|.|++.-  .-+-
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~~   81 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKVY   81 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHHh
Confidence            69999999999999998766432    5665543321                 01124578999999999742  1122


Q ss_pred             CCccCCC--eEEEEeeccCCCC
Q 022295          226 GSWIKPG--AAVIDVGTNAVDD  245 (299)
Q Consensus       226 ~~~vk~g--avVIDvg~~~~~~  245 (299)
                      +..++.|  ++|||.+..+.-+
T Consensus        82 ~~l~~~g~~~~VIDlSsdfR~~  103 (147)
T d1mb4a1          82 PALRQAGWKGYWIDAASTLRMD  103 (147)
T ss_dssp             HHHHHTTCCSEEEESSSTTTTC
T ss_pred             HHHHHcCCceEEEeCCcccccc
Confidence            3334445  6899999876533

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.62  E-value=0.0021  Score=55.32  Aligned_cols=36  Identities=28%  Similarity=0.491  Sum_probs=33.8

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      |+||.++|.|++.-+|+.+|..|+++|++|.++.++
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   39 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            899999999998888999999999999999999765

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.59  E-value=0.0041  Score=54.55  Aligned_cols=37  Identities=32%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+||+|+|.|++|.+|..++..|+++|++|..+.+..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4789999999999999999999999999999997653

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.57  E-value=0.0062  Score=48.56  Aligned_cols=55  Identities=13%  Similarity=0.224  Sum_probs=40.1

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC-------eEEEEcCC--------------------------CCChhhhccCCcEE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA-------TVTIVHSH--------------------------TTDPESIVREADIV  214 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga-------tVtv~~~~--------------------------t~~l~~~~~~ADIV  214 (299)
                      -+|+|||+++.||..++..|.+.+.       .....+..                          +.+..+.++++|+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            3899999877789999998876541       23333321                          23566889999999


Q ss_pred             EEecCCCC
Q 022295          215 IAAAGQAM  222 (299)
Q Consensus       215 Isa~g~p~  222 (299)
                      |.+.|.|.
T Consensus        84 Vitag~~~   91 (154)
T d5mdha1          84 ILVGSMPR   91 (154)
T ss_dssp             EECCSCCC
T ss_pred             EEecccCC
Confidence            99999764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.56  E-value=0.009  Score=44.93  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=30.7

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      -..|+++|||.|- +|--+|..|.+.|+.||+.++..
T Consensus        19 ~~p~~vvIiGgG~-~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          19 ALPQHLVVVGGGY-IGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             SCCSEEEEECCSH-HHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCCeEEEECCCH-HHHHHHHHHhhcccceEEEeeec
Confidence            3458999999665 59999999999999999998753

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.53  E-value=0.0057  Score=48.79  Aligned_cols=55  Identities=16%  Similarity=0.341  Sum_probs=39.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC-------eEEEEcCC--------------------------CCChhhhccCCcEE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA-------TVTIVHSH--------------------------TTDPESIVREADIV  214 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga-------tVtv~~~~--------------------------t~~l~~~~~~ADIV  214 (299)
                      -+|+|+|+++.||..++.+|...+.       ...++...                          +.+..+.+++||+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            4899999977789999999886642       11222110                          24567889999999


Q ss_pred             EEecCCCC
Q 022295          215 IAAAGQAM  222 (299)
Q Consensus       215 Isa~g~p~  222 (299)
                      |.+.|.|.
T Consensus        85 iitaG~~~   92 (154)
T d1y7ta1          85 LLVGAAPR   92 (154)
T ss_dssp             EECCCCCC
T ss_pred             EeecCcCC
Confidence            99999763

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.52  E-value=0.016  Score=42.22  Aligned_cols=47  Identities=23%  Similarity=0.280  Sum_probs=37.0

Q ss_pred             cEEEEEcCCccchH-HHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEE
Q 022295          168 KRAVVVGRSNIVGL-PVSLLLLKADATVTIVHSHTTDPESIVREADIVI  215 (299)
Q Consensus       168 k~vvViG~s~~vG~-pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVI  215 (299)
                      .++-.||-|++ |+ ++|.+|.++|+.|+-++.......+.++...+-|
T Consensus         2 ~~ihfiGIgG~-GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i   49 (89)
T d1j6ua1           2 MKIHFVGIGGI-GMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPI   49 (89)
T ss_dssp             CEEEEETTTSH-HHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCE
T ss_pred             cEEEEEeECHH-HHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeE
Confidence            47888999997 88 7899999999999999977555555566665534

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.38  E-value=0.009  Score=51.17  Aligned_cols=35  Identities=23%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .||.++|-|+|.-+|+.+|..|+++|++|.++.++
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~   35 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   35 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            48888999999888999999999999999999865

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.36  E-value=0.0049  Score=49.34  Aligned_cols=34  Identities=12%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~  200 (299)
                      .+|+|+|||+|.+ |...|..|.++|++ |+++++.
T Consensus         3 ~~~kVaIIGaGpa-Gl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPA-SISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHH-HHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHH-HHHHHHHHHHCCCCeEEEEEec
Confidence            3799999998886 99999999999985 9999865

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.36  E-value=0.014  Score=44.24  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ..++++|||.|- +|.-+|..|.+.|+.||++++..
T Consensus        21 ~p~~i~IiG~G~-ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGV-IGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECCCh-HHHHHHHHHHHcCCceEEEEeec
Confidence            458999999665 59999999999999999998664

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0096  Score=42.44  Aligned_cols=54  Identities=30%  Similarity=0.319  Sum_probs=42.2

Q ss_pred             CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC
Q 022295          150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD  203 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~  203 (299)
                      |++-.+..+.+.+..-+|.+++|.|+++.||....+++...|++|+.+.++.++
T Consensus        15 TA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          15 TAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             HHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            444445556666666789999999999999999999999999998877655433

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.33  E-value=0.016  Score=47.24  Aligned_cols=53  Identities=23%  Similarity=0.218  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      ||+-.++-|.+.+..-+|.+|+|-|+++-||..+.+++...|++|+.+-++..
T Consensus        15 TA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~   67 (176)
T d1xa0a2          15 TAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA   67 (176)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             HHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchH
Confidence            34434455556677778999999999999999999999999998877765543

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=95.32  E-value=0.005  Score=55.06  Aligned_cols=92  Identities=11%  Similarity=0.183  Sum_probs=70.6

Q ss_pred             CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhh----CCC-------eEEEEcCC------------------
Q 022295          150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK----ADA-------TVTIVHSH------------------  200 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~----~ga-------tVtv~~~~------------------  200 (299)
                      +-.|++..|+-.+.+|+..+++++|+|.+ |..++.+|..    +|.       .+++|+++                  
T Consensus         8 ~lAglinAlki~gk~l~d~kivi~GAGaA-g~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a   86 (308)
T d1o0sa1           8 IVAGLLTCTRVTKKLVSQEKYLFFGAGAA-STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFA   86 (308)
T ss_dssp             HHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTC
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEECcCHH-HHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHH
Confidence            35678999999999999999999999987 9888877653    342       38999764                  


Q ss_pred             -----CCChhhhccC--CcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295          201 -----TTDPESIVRE--ADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV  243 (299)
Q Consensus       201 -----t~~l~~~~~~--ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~  243 (299)
                           ..++.+.++.  -+++|.+.|.++.+++++++      +.-+|+=++ ||.
T Consensus        87 ~~~~~~~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  141 (308)
T d1o0sa1          87 KDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS-NPT  141 (308)
T ss_dssp             BSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HhcccCCcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEcc-CCC
Confidence                 1234454443  37899999999999999985      678888887 554

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.30  E-value=0.01  Score=46.96  Aligned_cols=52  Identities=23%  Similarity=0.345  Sum_probs=39.9

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC--eEEEEcCC--------------------------CCChhhhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      |+.|||+|. ||.++|..|+.++.  ++.+++.+                          +.+ .+.+++||+||.+.|.
T Consensus         2 KI~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~   79 (142)
T d1ojua1           2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (142)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEeccc
Confidence            689999866 69999999887773  57777532                          123 3789999999999886


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        80 ~~   81 (142)
T d1ojua1          80 AR   81 (142)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.015  Score=50.66  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=29.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      |+|+|.|++|.+|+.++..|+++|.+|+.+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d   32 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVD   32 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            8999999999999999999999999999885

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.25  E-value=0.0071  Score=48.80  Aligned_cols=53  Identities=13%  Similarity=0.103  Sum_probs=39.8

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEE--cCCC--------------------CChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIV--HSHT--------------------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~--~~~t--------------------~~l~~~~~~ADIVIsa~g~  220 (299)
                      ++|+|.|++|.+|+.++..|+++|.+|+++  .|+.                    ..+.+.++.+|.||..++.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            689999999999999999999999765443  2321                    1234667889999977664

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.23  E-value=0.0097  Score=51.25  Aligned_cols=50  Identities=30%  Similarity=0.197  Sum_probs=40.6

Q ss_pred             ccCCHHHHHHHH----HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE
Q 022295          147 LPCTPKGCLELL----KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       147 ~PcT~~av~~ll----~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~  197 (299)
                      ..+|++|+...+    ++.+.+|+||+|+|=|.|. ||..+|++|.+.||+|+.+
T Consensus         7 ~~ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGn-VG~~~a~~L~~~Gakvv~v   60 (242)
T d1v9la1           7 EYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGN-VGRWTAYWLEKMGAKVIAV   60 (242)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSH-HHHHHHHHHHTTTCEEEEE
T ss_pred             cchhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEe
Confidence            346777766555    4567899999999999888 5999999999999987543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.23  E-value=0.0099  Score=50.17  Aligned_cols=35  Identities=14%  Similarity=0.159  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +||+|+|.|+|+-+|+.++..|+++|++|.++++.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~   35 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV   35 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            58999999999988999999999999999998654

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.22  E-value=0.021  Score=44.21  Aligned_cols=75  Identities=13%  Similarity=0.313  Sum_probs=56.4

Q ss_pred             CcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhcc
Q 022295          164 TIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVR  209 (299)
Q Consensus       164 ~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~  209 (299)
                      .+.+|+|.|+|-+         +.-...++..|..+|+.|.+.+-.                         ..++.+.++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            4678999999932         222667889999999999998521                         246778899


Q ss_pred             CCcEEEEecCCCCcCC-CCccCCCeEEEEe
Q 022295          210 EADIVIAAAGQAMMIK-GSWIKPGAAVIDV  238 (299)
Q Consensus       210 ~ADIVIsa~g~p~~i~-~~~vk~gavVIDv  238 (299)
                      .||+||.++..+.|.+ ...++++.+|+|+
T Consensus        90 ~~D~ivi~t~h~~f~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          90 SSDVLVLGNGDELFVDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HCSEEEECSCCGGGHHHHHSCCTTCEEEES
T ss_pred             hceEEEEEeCCHHHHHHHHHhcCCCEEEEC
Confidence            9999999999888632 1234567899996

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.01  Score=50.18  Aligned_cols=38  Identities=16%  Similarity=0.341  Sum_probs=32.7

Q ss_pred             cCCcEEEEEcCCc--cchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          165 IKGKRAVVVGRSN--IVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       165 l~gk~vvViG~s~--~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      |+||+++|.|++.  -+|+.+|..|+++|++|.++.++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            7999999999874  2489999999999999999987643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.12  E-value=0.0068  Score=49.78  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=28.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      |+|.|||+|- +|..+|.+++..|.+|++++..
T Consensus         5 ~~vaViGaG~-mG~~iA~~~a~~G~~V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGI-MGGGIAYQSASKGTPILMKDIN   36 (186)
T ss_dssp             SSEEEECCHH-HHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEECcCH-HHHHHHHHHHhCCCeEEEEECC
Confidence            6899999866 5999999999999999999754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.09  E-value=0.021  Score=46.15  Aligned_cols=96  Identities=18%  Similarity=0.219  Sum_probs=62.5

Q ss_pred             ccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC--------------------C-
Q 022295          145 LFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT--------------------T-  202 (299)
Q Consensus       145 ~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t--------------------~-  202 (299)
                      +.++|--.-.+..+.+..-.-.|.+|+|+|.|+ +|...++.+...|| .|+++.+..                    + 
T Consensus         7 a~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~-iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~   85 (174)
T d1e3ia2           7 CLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGC-VGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDK   85 (174)
T ss_dssp             GGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSS
T ss_pred             HHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCh-HHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchh
Confidence            346774444444443333345789999999877 49999999999998 577776442                    1 


Q ss_pred             Chhhh-----ccCCcEEEEecCCCCcCCC--CccCCC-eEEEEeecc
Q 022295          203 DPESI-----VREADIVIAAAGQAMMIKG--SWIKPG-AAVIDVGTN  241 (299)
Q Consensus       203 ~l~~~-----~~~ADIVIsa~g~p~~i~~--~~vk~g-avVIDvg~~  241 (299)
                      .....     =..+|++|-++|.|..+..  +++++| -.++=+|..
T Consensus        86 ~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          86 PVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             CHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             hhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCC
Confidence            11111     1347999999999876533  567774 345557764

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.07  E-value=0.026  Score=48.06  Aligned_cols=87  Identities=24%  Similarity=0.380  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC----------------------------C
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH----------------------------T  201 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~----------------------------t  201 (299)
                      -.|++..++-.+.+|+..+++++|+|.+ |..++.+|...+. .++.++++                            .
T Consensus        10 LAgll~a~~~~g~~l~d~riv~~GAGsA-g~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~   88 (222)
T d1vl6a1          10 SAAFLNALKLTEKKIEEVKVVVNGIGAA-GYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLS   88 (222)
T ss_dssp             HHHHHHHHHHHTCCTTTCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCC
T ss_pred             HHHHHHHHHHhCCChhhcEEEEEChHHH-HHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhh
Confidence            4678899999999999999999999997 9999999998886 69999865                            1


Q ss_pred             CChhhhccCCcEEEEecCCCCcCCCCccC---CCeEEEEee
Q 022295          202 TDPESIVREADIVIAAAGQAMMIKGSWIK---PGAAVIDVG  239 (299)
Q Consensus       202 ~~l~~~~~~ADIVIsa~g~p~~i~~~~vk---~gavVIDvg  239 (299)
                      .++.+.++.+|+++... .++.+++|+++   +.-+|+=++
T Consensus        89 ~~l~~~l~g~~~~~g~~-~~~~~~~e~m~~~~~rPIIFpLS  128 (222)
T d1vl6a1          89 GDLETALEGADFFIGVS-RGNILKPEWIKKMSRKPVIFALA  128 (222)
T ss_dssp             SCHHHHHTTCSEEEECS-CSSCSCHHHHTTSCSSCEEEECC
T ss_pred             cchHhhccCcceecccc-ccccccHHHHhhcCCCCEEEecC
Confidence            35667888999877654 46677665553   355666655

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=95.06  E-value=0.019  Score=46.94  Aligned_cols=57  Identities=14%  Similarity=0.246  Sum_probs=41.5

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCC---C----eEEEEcCC--------------------------CCChhhhccCCc
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKAD---A----TVTIVHSH--------------------------TTDPESIVREAD  212 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~g---a----tVtv~~~~--------------------------t~~l~~~~~~AD  212 (299)
                      +--+|+|+|+++.||.+++.+|++.+   .    .+.+.+..                          +.+..+.+++||
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD  102 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  102 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence            34589999997778999999888642   1    23333321                          346778899999


Q ss_pred             EEEEecCCCC
Q 022295          213 IVIAAAGQAM  222 (299)
Q Consensus       213 IVIsa~g~p~  222 (299)
                      +||...|.|.
T Consensus       103 vVvi~ag~~r  112 (175)
T d7mdha1         103 WALLIGAKPR  112 (175)
T ss_dssp             EEEECCCCCC
T ss_pred             eEEEeeccCC
Confidence            9998888664

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.00  E-value=0.0042  Score=50.68  Aligned_cols=75  Identities=17%  Similarity=0.325  Sum_probs=51.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhC-CCeEEEEc---CCC---C---------------------ChhhhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKA-DATVTIVH---SHT---T---------------------DPESIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~-gatVtv~~---~~t---~---------------------~l~~~~~~ADIVIsa~g~  220 (299)
                      +|.|+|++|.+|.-+.++|.++ ...++-+.   +..   +                     +......+.|+++.|.+.
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp~   82 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATAH   82 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSCH
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccccc
Confidence            7999999999999999999987 55554331   110   0                     112235678999999874


Q ss_pred             CC--cCCCCccCCCeEEEEeeccCC
Q 022295          221 AM--MIKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       221 p~--~i~~~~vk~gavVIDvg~~~~  243 (299)
                      ..  -+-+...+.|..|||.+..+.
T Consensus        83 ~~s~~~~~~~~~~~~~vIDlSadfR  107 (179)
T d2g17a1          83 EVSHDLAPQFLQAGCVVFDLSGAFR  107 (179)
T ss_dssp             HHHHHHHHHHHHTTCEEEECSSTTS
T ss_pred             hhHHHHhhhhhhcCceeeccccccc
Confidence            22  233445677999999998764

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.97  E-value=0.0062  Score=50.75  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      .|.++|.|+|.-+|+.+|..|+++||+|.++.++..
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            488999999888899999999999999999987643

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.91  E-value=0.012  Score=46.61  Aligned_cols=71  Identities=15%  Similarity=0.267  Sum_probs=51.9

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCCCCcC------CCCcc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQAMMI------KGSWI  229 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~p~~i------~~~~v  229 (299)
                      ||-+||-|.+ |.++|..|++.|..+ +.++..             .+..+.+.++|++|+....+.-+      -.+..
T Consensus         2 kIg~IGlG~M-G~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAM-GYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL   79 (156)
T ss_dssp             CEEEECCSTT-HHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred             eEEEEeHHHH-HHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence            5889999986 999999999988765 455442             12336677899999887755421      12456


Q ss_pred             CCCeEEEEeecc
Q 022295          230 KPGAAVIDVGTN  241 (299)
Q Consensus       230 k~gavVIDvg~~  241 (299)
                      +++.++||.++.
T Consensus        80 ~~~~~iid~sT~   91 (156)
T d2cvza2          80 REGTYWVDATSG   91 (156)
T ss_dssp             CTTEEEEECSCC
T ss_pred             cccccccccccC
Confidence            889999999865

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=94.87  E-value=0.016  Score=50.36  Aligned_cols=51  Identities=20%  Similarity=0.205  Sum_probs=41.5

Q ss_pred             ccCCHHHHHHHHH----hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEc
Q 022295          147 LPCTPKGCLELLK----RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVH  198 (299)
Q Consensus       147 ~PcT~~av~~ll~----~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~  198 (299)
                      -.+|.+|++..++    +.+.+++||+|+|=|.|+ ||..++..|.+.|+.|+ +.+
T Consensus        12 ~eATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGn-VG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          12 PEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN-VAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSH-HHHHHHHHHHHHTCEEEEEEE
T ss_pred             CccchHHHHHHHHHHHHhCCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEec
Confidence            4578888766554    558899999999999877 69999999999999764 444

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.84  E-value=0.011  Score=48.41  Aligned_cols=33  Identities=36%  Similarity=0.555  Sum_probs=29.0

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -|+|+|||+|-+ |-.+|..|+++|..|+++.+.
T Consensus         6 ~~kVvVIGaGia-Gl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVI-GLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            478999997665 999999999999999999753

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.81  E-value=0.025  Score=49.78  Aligned_cols=56  Identities=11%  Similarity=0.105  Sum_probs=44.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccCCcEEEEecCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVREADIVIAAAGQ  220 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g~  220 (299)
                      -++.+|+|.|++|.+|..++..|+++|.+|+++++...                     ++.+.++..|.||..++.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~   89 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD   89 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecccc
Confidence            37889999999999999999999999999999864311                     123456789999976653

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=94.80  E-value=0.013  Score=52.06  Aligned_cols=92  Identities=15%  Similarity=0.265  Sum_probs=70.7

Q ss_pred             CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhh----CC-------CeEEEEcCC------------------
Q 022295          150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK----AD-------ATVTIVHSH------------------  200 (299)
Q Consensus       150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~----~g-------atVtv~~~~------------------  200 (299)
                      |-.|++..++-.+.+|+..++++.|+|-. |-.++.+|..    .|       -.+++|+++                  
T Consensus         8 ~lAglinAlki~gk~l~d~kiV~~GAGsA-g~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a   86 (298)
T d1gq2a1           8 AVAGLLAALRITKNRLSDHTVLFQGAGEA-ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFA   86 (298)
T ss_dssp             HHHHHHHHHHHHTSCGGGCCEEEECCSHH-HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGC
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEECccHH-HHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHH
Confidence            45789999999999999999999999987 8888887752    23       258999865                  


Q ss_pred             -----CCChhhhccC--CcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295          201 -----TTDPESIVRE--ADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV  243 (299)
Q Consensus       201 -----t~~l~~~~~~--ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~  243 (299)
                           ..++.+.++.  .+++|.+++.|+.++.++++      +.-+|+=++ ||.
T Consensus        87 ~~~~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLS-NPt  141 (298)
T d1gq2a1          87 HEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALS-NPT  141 (298)
T ss_dssp             BSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHhhhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEcc-CCC
Confidence                 1234444443  78999999999999999886      677888777 443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.80  E-value=0.039  Score=40.54  Aligned_cols=49  Identities=12%  Similarity=0.148  Sum_probs=35.8

Q ss_pred             CCcEEEEEcCCccchH-HHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEE
Q 022295          166 KGKRAVVVGRSNIVGL-PVSLLLLKADATVTIVHSHTTDPESIVREADIVI  215 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~-pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVI  215 (299)
                      +.|++-+||-|++ |+ ++|++|.++|.+|+-++.......+.+.+.-+-|
T Consensus         7 ~~~~ihfiGigG~-GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v   56 (96)
T d1p3da1           7 RVQQIHFIGIGGA-GMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKI   56 (96)
T ss_dssp             TCCEEEEETTTST-THHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEE
T ss_pred             hCCEEEEEEECHH-HHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeE
Confidence            4689999999997 85 5699999999999999876443333333333333

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.028  Score=47.51  Aligned_cols=58  Identities=21%  Similarity=0.334  Sum_probs=44.9

Q ss_pred             CcCCcEEEEEc----------------CCccchHHHHHHHhhCCCeEEEEcCCCC----------------C----hhhh
Q 022295          164 TIKGKRAVVVG----------------RSNIVGLPVSLLLLKADATVTIVHSHTT----------------D----PESI  207 (299)
Q Consensus       164 ~l~gk~vvViG----------------~s~~vG~pla~lL~~~gatVtv~~~~t~----------------~----l~~~  207 (299)
                      +|+|++|+|-+                .||-.|..+|..+..+||.||++|..+.                +    +.+.
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~   82 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   82 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhh
Confidence            68899999886                4566799999999999999999986431                1    2256


Q ss_pred             ccCCcEEEEecCCC
Q 022295          208 VREADIVIAAAGQA  221 (299)
Q Consensus       208 ~~~ADIVIsa~g~p  221 (299)
                      ++++|++|.++-..
T Consensus        83 ~~~~D~~i~aAAvs   96 (223)
T d1u7za_          83 VQQQNIFIGCAAVA   96 (223)
T ss_dssp             GGGCSEEEECCBCC
T ss_pred             hccceeEeeeechh
Confidence            78999999665543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.73  E-value=0.051  Score=43.77  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=65.3

Q ss_pred             ccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCC--------------------C
Q 022295          145 LFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTT--------------------D  203 (299)
Q Consensus       145 ~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~--------------------~  203 (299)
                      +.++|.-.-.+..+.+..-.-.|..|+|+|.|++ |-..++.+...|+ +|++++++..                    +
T Consensus         8 a~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~Ggv-Gl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~   86 (176)
T d1d1ta2           8 CLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGV-GLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTK   86 (176)
T ss_dssp             GGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSS
T ss_pred             HhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCch-hHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccch
Confidence            3567755555555544443457999999999885 9999999999995 7888875411                    1


Q ss_pred             -hh---hhc--cCCcEEEEecCCCCcC-C-CC-ccCCCeEEEEeeccCC
Q 022295          204 -PE---SIV--READIVIAAAGQAMMI-K-GS-WIKPGAAVIDVGTNAV  243 (299)
Q Consensus       204 -l~---~~~--~~ADIVIsa~g~p~~i-~-~~-~vk~gavVIDvg~~~~  243 (299)
                       .+   +.+  ..+|++|.++|.+..+ . .. ..+.+-.++-+|....
T Consensus        87 ~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~  135 (176)
T d1d1ta2          87 PISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPS  135 (176)
T ss_dssp             CHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCT
T ss_pred             HHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEcccc
Confidence             11   212  4589999999987642 2 22 3355468888887643

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.73  E-value=0.014  Score=44.69  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=39.7

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------C---hhh-hccCCcEEEEecCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------D---PES-IVREADIVIAAAGQA  221 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------~---l~~-~~~~ADIVIsa~g~p  221 (299)
                      +|+|+|.|. +|+.++..|.++|..|++......                   +   +.+ .+++||.++++++..
T Consensus         2 ~IvI~G~G~-~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d   76 (132)
T d1lssa_           2 YIIIAGIGR-VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   76 (132)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             EEEEECCCH-HHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH
Confidence            689999877 599999999999999999975421                   1   222 267788888877764

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.66  E-value=0.026  Score=44.59  Aligned_cols=53  Identities=23%  Similarity=0.268  Sum_probs=39.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC--eEEEEcCC--------------------------CCChhhhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~  220 (299)
                      ||.|||+.|.||..+|..|..++.  ++.+.+..                          +.+ .+.+++|||||.+.|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~-~~~~~~aDiVvitaG~   80 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG-YEDTAGSDVVVITAGI   80 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC-GGGGTTCSEEEECCCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC-HHHhhhcCEEEEeccc
Confidence            799999655579999999998884  56666521                          112 2568899999988886


Q ss_pred             CC
Q 022295          221 AM  222 (299)
Q Consensus       221 p~  222 (299)
                      |.
T Consensus        81 ~~   82 (142)
T d1o6za1          81 PR   82 (142)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.59  E-value=0.017  Score=49.51  Aligned_cols=48  Identities=27%  Similarity=0.308  Sum_probs=38.4

Q ss_pred             CCHHHHH----HHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhh-CCCeEEEE
Q 022295          149 CTPKGCL----ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK-ADATVTIV  197 (299)
Q Consensus       149 cT~~av~----~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~-~gatVtv~  197 (299)
                      +|+.|+.    +.+++.+.+++||+|+|=|.|. ||..+|+.|.+ .|+.|+.+
T Consensus         9 ATg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~Gn-VG~~~a~~L~~e~Ga~vv~v   61 (234)
T d1b26a1           9 ATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGN-VGQFAALLISQELGSKVVAV   61 (234)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSH-HHHHHHHHHHHHHCCEEEEE
T ss_pred             hhhHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHhcCCceEEe
Confidence            5677766    4566678999999999999888 59999999975 59976544

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.51  E-value=0.041  Score=44.51  Aligned_cols=55  Identities=24%  Similarity=0.312  Sum_probs=38.0

Q ss_pred             CcEEEEEcCCccchHHHH--HHHhhCC----CeEEEEcCC--------------------------CCChhhhccCCcEE
Q 022295          167 GKRAVVVGRSNIVGLPVS--LLLLKAD----ATVTIVHSH--------------------------TTDPESIVREADIV  214 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla--~lL~~~g----atVtv~~~~--------------------------t~~l~~~~~~ADIV  214 (299)
                      .-+|+|||+|. +|.+.+  .+|....    .++.+++..                          +.+..+.++.||+|
T Consensus         3 ~~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V   81 (167)
T d1u8xx1           3 SFSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV   81 (167)
T ss_dssp             CEEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred             CceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence            45799999877 476533  3333222    367777643                          35788999999999


Q ss_pred             EEecCCCC
Q 022295          215 IAAAGQAM  222 (299)
Q Consensus       215 Isa~g~p~  222 (299)
                      |+++|.+.
T Consensus        82 vitag~~~   89 (167)
T d1u8xx1          82 MAHIRVGK   89 (167)
T ss_dssp             EECCCTTH
T ss_pred             EECCCcCC
Confidence            99998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.49  E-value=0.022  Score=43.41  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+|+++|||+|- +|--+|..|.++|.+||++++..
T Consensus        29 ~~~~vvIIGgG~-iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGV-IGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcch-hHHHHHHHhhcccceEEEEeecc
Confidence            469999999766 59999999999999999998764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.40  E-value=0.032  Score=45.37  Aligned_cols=54  Identities=15%  Similarity=0.203  Sum_probs=39.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-----------CChh----hhccCCcEEEEecCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-----------TDPE----SIVREADIVIAAAGQA  221 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-----------~~l~----~~~~~ADIVIsa~g~p  221 (299)
                      |+|+|+|++|.+|+.++..|+++|.  +|+.+.++.           .++.    ......|.||.++|..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            8999999999999999999999986  566555442           1222    2233469999888753

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.39  E-value=0.028  Score=47.09  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=29.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      |-|+|.|++.-+|+.+|..|+++|++|.+++++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            5678889888889999999999999999998764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.34  E-value=0.0091  Score=46.75  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=27.6

Q ss_pred             EEEEE-cCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          169 RAVVV-GRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       169 ~vvVi-G~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +|.|| |.|+ +|+.+|..|++.|+.|++..|+.
T Consensus         2 ki~vigGaG~-iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGN-LGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcH-HHHHHHHHHHHCCCEEEEEECCH
Confidence            58888 5565 69999999999999999998764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.33  E-value=0.021  Score=43.89  Aligned_cols=35  Identities=11%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ..++++|||.|- +|--+|..|.+.|..||++++..
T Consensus        25 ~p~~vvIiGgG~-IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIGGGI-IGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEESCSH-HHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEECCCH-HHHHHHHHhhcCCCEEEEEEeec
Confidence            358999999655 69999999999999999998753

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.30  E-value=0.017  Score=44.83  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=28.8

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCC--CeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~  200 (299)
                      .||+|+|||+|-+ |..+|..|.+.+  .+||+.++.
T Consensus         1 ~gkrivIvGgG~~-G~e~A~~l~~~~~~~~Vtlie~~   36 (186)
T d1fcda1           1 AGRKVVVVGGGTG-GATAAKYIKLADPSIEVTLIEPN   36 (186)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCCcEEEECccHH-HHHHHHHHHHcCCCCcEEEEECC
Confidence            5899999997775 999999998877  589998754

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.25  E-value=0.028  Score=48.15  Aligned_cols=50  Identities=24%  Similarity=0.369  Sum_probs=38.1

Q ss_pred             cCCHHHHH----HHHHhhCCC-cCCcEEEEEcCCccchHHHHHHHhhC-CCeE-EEEc
Q 022295          148 PCTPKGCL----ELLKRSGVT-IKGKRAVVVGRSNIVGLPVSLLLLKA-DATV-TIVH  198 (299)
Q Consensus       148 PcT~~av~----~ll~~~~~~-l~gk~vvViG~s~~vG~pla~lL~~~-gatV-tv~~  198 (299)
                      -+|++|+.    +.+++++.+ |+||+|+|-|.|. ||..+|++|.++ |+.| ++.+
T Consensus         8 eATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGn-VG~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1           8 EATARGASYTIREAAKVLGWDTLKGKTIAIQGYGN-AGYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             THHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSH-HHHHHHHHHHHTTCCEEEEEEC
T ss_pred             chhhHHHHHHHHHHHHHhCCCCcCCCEEEEECCCH-HHHHHHHHHHHhcCcceeeccc
Confidence            35788877    455566764 9999999999888 699999998764 7764 4444

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.23  E-value=0.021  Score=47.63  Aligned_cols=35  Identities=14%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      -|+|+|+|++|.+|+.++..|+++|.+|++..|..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            48899999999999999999999999999987653

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.21  E-value=0.027  Score=46.00  Aligned_cols=76  Identities=14%  Similarity=0.100  Sum_probs=48.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCC----------------------ChhhhccCCcEEEEecCCCC--
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTT----------------------DPESIVREADIVIAAAGQAM--  222 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~----------------------~l~~~~~~ADIVIsa~g~p~--  222 (299)
                      -+|.|+|++|.+|.-+.++|.++- .+++...+.+.                      ...+...++|+++.|++.-.  
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s~   85 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTTQ   85 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHHH
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchHH
Confidence            479999999999999999999874 46555544321                      11234578999999987422  


Q ss_pred             cCCCCccCCCeEEEEeeccCC
Q 022295          223 MIKGSWIKPGAAVIDVGTNAV  243 (299)
Q Consensus       223 ~i~~~~vk~gavVIDvg~~~~  243 (299)
                      -+-+...+.+.+|+|.+..+.
T Consensus        86 ~~~~~l~~~~~~v~~~~~~~~  106 (183)
T d2cvoa1          86 EIIKGLPQELKIVDLSADFRL  106 (183)
T ss_dssp             HHHHTSCSSCEEEECSSTTTC
T ss_pred             HHHHHHHhcCcccccchhhhc
Confidence            121233445555555554443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.21  E-value=0.019  Score=48.99  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=28.6

Q ss_pred             cEE-EEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRA-VVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~v-vViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ||| +|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~   34 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   34 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            455 677988878999999999999999999875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.17  E-value=0.035  Score=43.97  Aligned_cols=87  Identities=16%  Similarity=0.169  Sum_probs=58.1

Q ss_pred             ccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC---------------------C
Q 022295          145 LFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT---------------------T  202 (299)
Q Consensus       145 ~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t---------------------~  202 (299)
                      ..++|...-.+..+.+.+---.|.+|+|.|.|++ |...++++...|+ +|+++.++.                     .
T Consensus         7 a~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGv-G~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~   85 (176)
T d2fzwa2           7 CLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGV-GLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSK   85 (176)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSS
T ss_pred             hHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhH-HHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhh
Confidence            3578877666666655444457999999999985 9988888888896 566564431                     1


Q ss_pred             Chhhhc-----cCCcEEEEecCCCCcCC--CCccCCC
Q 022295          203 DPESIV-----READIVIAAAGQAMMIK--GSWIKPG  232 (299)
Q Consensus       203 ~l~~~~-----~~ADIVIsa~g~p~~i~--~~~vk~g  232 (299)
                      +..+.+     ..+|+||-++|.+..+.  ..++++|
T Consensus        86 ~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g  122 (176)
T d2fzwa2          86 PIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG  122 (176)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT
T ss_pred             HHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC
Confidence            122221     34799999999877542  3446665

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.15  E-value=0.039  Score=45.91  Aligned_cols=38  Identities=39%  Similarity=0.548  Sum_probs=31.3

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHh--------------------hCCC-eEEEEcCCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLL--------------------KADA-TVTIVHSHT  201 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~--------------------~~ga-tVtv~~~~t  201 (299)
                      .++.||+|+|||.|+ |+.=+|.+|+                    +.|+ +|+++-|++
T Consensus        35 ~~~~gk~VvVIGgGN-vAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          35 PDLSGARAVVIGNGN-VALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CCCCSSEEEEECCSH-HHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCCc-hhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            568899999999877 5999988877                    5676 799998774

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.025  Score=42.56  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      -|+++|||+|- +|--+|..|.+.|++||++++...
T Consensus        21 p~~vvIiGgG~-ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGY-IGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSH-HHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCCh-hhHHHHHHhhccccEEEEEeecch
Confidence            48999999766 599999999999999999987653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.10  E-value=0.016  Score=43.03  Aligned_cols=37  Identities=14%  Similarity=0.047  Sum_probs=31.2

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++||+|+|||.|.. |.-+|..|+....+|++++++.
T Consensus        29 ~f~gK~VlVVG~g~S-a~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          29 LFVGESVLVVGGASS-ANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGTTCCEEEECSSHH-HHHHHHHHTTTSCSSEEEECTT
T ss_pred             hcCCCeEEEECCCCC-HHHHHHHHHHhcCEEEEEEecC
Confidence            579999999999887 9999999998887777666554

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.05  E-value=0.045  Score=43.43  Aligned_cols=54  Identities=22%  Similarity=0.320  Sum_probs=43.6

Q ss_pred             cCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCcEEEEec
Q 022295          165 IKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       165 l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      |+|++++.||-+ .-|-+.+..++...|+++++|.-.                         +.++.+.++.||+|.+-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            689999999932 346899999999999999999632                         346778999999999754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.03  E-value=0.042  Score=41.04  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      ..|+++|||+|- +|--+|..|.+.|..||++++...
T Consensus        21 ~p~~v~IiGgG~-ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGY-IGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECCCc-cceeeeeeecccccEEEEEEecce
Confidence            348999999766 599999999999999999987653

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.01  E-value=0.037  Score=44.25  Aligned_cols=53  Identities=21%  Similarity=0.103  Sum_probs=37.6

Q ss_pred             EEEEEcCCccchHHHHHHHh--hC----CCeEEEEcCC-----------------------CCChhhhccCCcEEEEecC
Q 022295          169 RAVVVGRSNIVGLPVSLLLL--KA----DATVTIVHSH-----------------------TTDPESIVREADIVIAAAG  219 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~--~~----gatVtv~~~~-----------------------t~~l~~~~~~ADIVIsa~g  219 (299)
                      |++|||+|. +|.+.+....  ..    ..++.+.+..                       +.+..+.+++||+||.++|
T Consensus         2 KIaiIGaGs-~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           2 RIAVIGGGS-SYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             EEEEETTTC-TTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             EEEEECCCH-HHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            689999876 5877764322  22    2467777643                       4567789999999999999


Q ss_pred             CCC
Q 022295          220 QAM  222 (299)
Q Consensus       220 ~p~  222 (299)
                      .|.
T Consensus        81 ~~~   83 (162)
T d1up7a1          81 PGG   83 (162)
T ss_dssp             TTH
T ss_pred             cCC
Confidence            763

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.01  E-value=0.026  Score=42.69  Aligned_cols=34  Identities=12%  Similarity=0.184  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .|+++|||+|- +|--+|..|.+.|+.||++++..
T Consensus        22 p~~v~IiGgG~-iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGY-IAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSH-HHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCch-HHHHHHHHHHhccccceeeehhc
Confidence            48999999766 59999999999999999999764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.025  Score=46.52  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +-++|+|||+|-. |-..|..|.++|..|+|+..+
T Consensus         4 ~~~kViVIGaG~a-GL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGSGVS-GLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCCEEEEECCBHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHhCCCCEEEEeCC
Confidence            4468999998887 999999999999999999754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.97  E-value=0.014  Score=46.93  Aligned_cols=73  Identities=12%  Similarity=0.182  Sum_probs=49.0

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC-------------------------hhhhccCCcEEEEecCCCCc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD-------------------------PESIVREADIVIAAAGQAMM  223 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~-------------------------l~~~~~~ADIVIsa~g~p~~  223 (299)
                      +|-|||-|.+ |.++|..|++.|..|++++++...                         +...+..++.++..+.....
T Consensus         3 kIGvIGlG~M-G~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           3 DVGVVGLGVM-GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             EEEEEeehHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            5889999886 999999999999999999875211                         11233445555544433221


Q ss_pred             C------CCCccCCCeEEEEeeccC
Q 022295          224 I------KGSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       224 i------~~~~vk~gavVIDvg~~~  242 (299)
                      +      -...+++|.+++|.+...
T Consensus        82 ~~~~~~~~~~~~~~~~iii~~st~~  106 (178)
T d1pgja2          82 TDSTIEQLKKVFEKGDILVDTGNAH  106 (178)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             hhhhhhhhhhhccccceecccCccc
Confidence            1      123468899999988653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.93  E-value=0.064  Score=39.93  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=31.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ..+|+++|||.|- +|--+|..|...|+.|+++++..
T Consensus        20 ~~~~~vvVvGgG~-ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSK-TAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSH-HHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHhcchhheEeeccc
Confidence            3589999999666 59999999999999999998764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.90  E-value=0.019  Score=48.07  Aligned_cols=49  Identities=27%  Similarity=0.373  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhh-CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          151 PKGCLELLKRS-GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       151 ~~av~~ll~~~-~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ....++..+.- .-.-..|+|+|||+|-+ |-.+|..|+++|..|+|+.+.
T Consensus        13 ~~~~~~~~~~~~~~~~~pkkV~IIGaG~a-GLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1          13 YEEFLEIARNGLKATSNPKHVVIVGAGMA-GLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             HHHHHHHHHHCSCCCSSCCEEEEECCBHH-HHHHHHHHHHHTCEEEEECSS
T ss_pred             HHHHHHHHhcCCCCCCCCCeEEEECCCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            44444444332 12235689999997765 999999999999999999764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.89  E-value=0.011  Score=50.47  Aligned_cols=38  Identities=13%  Similarity=0.158  Sum_probs=33.0

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhh---CCCeEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLK---ADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~---~gatVtv~~~~t  201 (299)
                      .|+||.++|-|+|.-+|+.+|..|++   +|++|.++.++.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            58999999999988889999999975   799999998764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.88  E-value=0.034  Score=42.87  Aligned_cols=36  Identities=31%  Similarity=0.502  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      .+|+++|||+|- +|--+|..|.+.|.+||++++...
T Consensus        34 ~~k~v~VIGgG~-iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGY-IGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCch-HHHHHHHHHHhhCcceeeeeeccc
Confidence            479999999766 599999999999999999987653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.77  E-value=0.032  Score=42.40  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      -|+++|||+|- +|--+|.+|.+.|+.||+.++..
T Consensus        23 p~~~vIiG~G~-ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGI-IGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSH-HHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCc-hHHHHHHHHHhhCcceeEEEecc
Confidence            38999999766 59999999999999999998764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.75  E-value=0.038  Score=44.83  Aligned_cols=52  Identities=33%  Similarity=0.453  Sum_probs=39.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------------------CChhhhccCCcEEEE
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------------------TDPESIVREADIVIA  216 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------------------~~l~~~~~~ADIVIs  216 (299)
                      +|.|||.|- ||.|+|..|+ +|.+|+..+.+.                                .+......++|+++.
T Consensus         2 kI~ViGlG~-vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           2 KIAVAGSGY-VGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             EEEEECCSH-HHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCCh-hHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            689999766 6999998775 699999886331                                123344678999999


Q ss_pred             ecCCCC
Q 022295          217 AAGQAM  222 (299)
Q Consensus       217 a~g~p~  222 (299)
                      +++.|.
T Consensus        80 ~vpt~~   85 (196)
T d1dlja2          80 ATPTNY   85 (196)
T ss_dssp             CCCCCE
T ss_pred             cCCccc
Confidence            998764

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.73  E-value=0.038  Score=48.87  Aligned_cols=48  Identities=25%  Similarity=0.227  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHhh------------CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE
Q 022295          149 CTPKGCLELLKRS------------GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       149 cT~~av~~ll~~~------------~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~  197 (299)
                      +|.+|++..++..            +.+|+||+|+|=|.|+ ||..+|..|.+.||+|+.+
T Consensus         6 ATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGn-VG~~~A~~L~e~Gakvv~v   65 (293)
T d1hwxa1           6 ATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGN-VGLHSMRYLHRFGAKCVAV   65 (293)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEE
T ss_pred             HhHHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence            5788887777642            2479999999999887 5999999999999986543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.60  E-value=0.034  Score=46.79  Aligned_cols=34  Identities=12%  Similarity=0.238  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -++|+|+|++|.+|+.++..|+++|.+|++..|.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~   36 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP   36 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3579999999999999999999999999988764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.38  E-value=0.033  Score=48.90  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +.|+|+|||+|-. |-.+|..|+++|..|+|+.++.
T Consensus         1 k~KKI~IIGaG~s-GL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFS-GAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhCCCCEEEEECCC
Confidence            4699999998776 9999999999999999998653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.027  Score=49.87  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=29.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      |.|+|.|++|.+|..++..|+++|.+|+.+.+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            77889999999999999999999999998875

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.26  E-value=0.079  Score=44.28  Aligned_cols=53  Identities=25%  Similarity=0.332  Sum_probs=40.0

Q ss_pred             CCCcCCcEEEEEcCCccchHHHHHHHhh--------------------CCC-eEEEEcCCCC--------ChhhhccCCc
Q 022295          162 GVTIKGKRAVVVGRSNIVGLPVSLLLLK--------------------ADA-TVTIVHSHTT--------DPESIVREAD  212 (299)
Q Consensus       162 ~~~l~gk~vvViG~s~~vG~pla~lL~~--------------------~ga-tVtv~~~~t~--------~l~~~~~~AD  212 (299)
                      ..+++||+|+|||.|+ |+.=+|..|++                    .|+ +|+++-++..        ++.+.....+
T Consensus        34 ~~~~~gk~VvVIGgGN-VAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~  112 (225)
T d1cjca1          34 APDLSCDTAVILGQGN-VALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPG  112 (225)
T ss_dssp             CCCTTSSEEEEESCSH-HHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTT
T ss_pred             CccccCceEEEECCch-hHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCC
Confidence            3578899999999777 59999998887                    375 7999987752        4556666556


Q ss_pred             EEE
Q 022295          213 IVI  215 (299)
Q Consensus       213 IVI  215 (299)
                      +-+
T Consensus       113 ~~~  115 (225)
T d1cjca1         113 TRP  115 (225)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            544

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.21  E-value=0.034  Score=46.47  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +++|+|.|+++-+|+.++..|+++|++|.++.+..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~   36 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   36 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            46799999999999999999999999999997653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.20  E-value=0.045  Score=45.15  Aligned_cols=34  Identities=32%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..++|+|||+|-+ |-.+|..|+++|..|+|..+.
T Consensus         3 ~~~kV~IiGaG~a-Gl~~A~~L~~~G~~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGGSIS-GLTAALMLRDAGVDVDVYERS   36 (265)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECcCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            4579999998776 999999999999999999864

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.12  E-value=0.043  Score=46.99  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=30.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      |+|+|.|++|.+|+.++..|+++|++|+.+.+.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~   33 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   33 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            789999999999999999999999999988754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.08  E-value=0.044  Score=41.37  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +|+++|||.|- +|--+|..|.+.|++||++++..
T Consensus        32 ~~~vvIiGgG~-iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGF-IGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSH-HHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcH-HHHHHHHHhhcccceEEEEeccc
Confidence            48999999666 59999999999999999998764

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.04  E-value=0.059  Score=44.25  Aligned_cols=76  Identities=22%  Similarity=0.310  Sum_probs=56.3

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCC---CCcC---
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQ---AMMI---  224 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~---p~~i---  224 (299)
                      |++|+|.|||.|.- |++=|+-|...|..|+|--+..              .++.|.++.||||...++.   +.+.   
T Consensus        14 ik~k~IaViGYGsQ-G~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD~~q~~vy~~~   92 (182)
T d1np3a2          14 IQGKKVAIIGYGSQ-GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEE   92 (182)
T ss_dssp             HHTSCEEEECCSHH-HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred             HCCCEEEEEeeCcH-hHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecchHHHHHHHHHh
Confidence            47899999999986 9999999999999999997653              2567999999999988873   2221   


Q ss_pred             CCCccCCCeE-EEEeecc
Q 022295          225 KGSWIKPGAA-VIDVGTN  241 (299)
Q Consensus       225 ~~~~vk~gav-VIDvg~~  241 (299)
                      -...+++|+. .+-=|+|
T Consensus        93 I~p~lk~g~~L~FaHGfn  110 (182)
T d1np3a2          93 IEPNLKKGATLAFAHGFS  110 (182)
T ss_dssp             TGGGCCTTCEEEESCCHH
T ss_pred             hhhhcCCCcEEEEeccce
Confidence            1234677754 3333433

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.03  E-value=0.087  Score=42.27  Aligned_cols=53  Identities=17%  Similarity=0.109  Sum_probs=35.7

Q ss_pred             EEEEEcCCccch--HHHHHHHhhCC----CeEEEEcCC----------------------------CCChhhhccCCcEE
Q 022295          169 RAVVVGRSNIVG--LPVSLLLLKAD----ATVTIVHSH----------------------------TTDPESIVREADIV  214 (299)
Q Consensus       169 ~vvViG~s~~vG--~pla~lL~~~g----atVtv~~~~----------------------------t~~l~~~~~~ADIV  214 (299)
                      +++|||+|.+ |  ..++.+++...    .++.+.+.+                            +.|..+.++.||+|
T Consensus         3 KI~iIGaGs~-~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           3 KIATIGGGSS-YTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEETTTCT-THHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             EEEEECCChh-hHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            6899998753 5  34444444432    267766532                            34667889999999


Q ss_pred             EEecCCCC
Q 022295          215 IAAAGQAM  222 (299)
Q Consensus       215 Isa~g~p~  222 (299)
                      |+++|.+.
T Consensus        82 v~ta~~~~   89 (169)
T d1s6ya1          82 TTQFRVGG   89 (169)
T ss_dssp             EECCCTTH
T ss_pred             EEccccCC
Confidence            99998764

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.00  E-value=0.063  Score=42.23  Aligned_cols=54  Identities=17%  Similarity=0.229  Sum_probs=44.0

Q ss_pred             cCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcCC---------------------CCChhhhccCCcEEEEec
Q 022295          165 IKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHSH---------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       165 l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~~---------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      |+|++|++||-.  +-|.+.++.+|...|+.+++|.-.                     +.++.+.+++||+|.+-.
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~   78 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR   78 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence            689999999973  336899999999999999998632                     357789999999988654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.82  E-value=0.034  Score=43.81  Aligned_cols=32  Identities=19%  Similarity=0.132  Sum_probs=28.5

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -.|+|||+|-. |..+|..|+++|..|+|+.++
T Consensus         6 yDviViGaG~~-Gl~~A~~La~~G~~V~vlE~~   37 (297)
T d2bcgg1           6 YDVIVLGTGIT-ECILSGLLSVDGKKVLHIDKQ   37 (297)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCCEEEEcCC
Confidence            35899997776 999999999999999999875

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.75  E-value=0.082  Score=43.03  Aligned_cols=55  Identities=24%  Similarity=0.315  Sum_probs=44.8

Q ss_pred             CcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCcEEEEe
Q 022295          164 TIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       164 ~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~ADIVIsa  217 (299)
                      +|+|.+|+.||-+ +-|.+.++.++...|+++++|+-.                         +.++.+.++.||+|.+-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            5789999999954 457999999999999999999632                         34677899999998864


Q ss_pred             c
Q 022295          218 A  218 (299)
Q Consensus       218 ~  218 (299)
                      +
T Consensus        82 ~   82 (185)
T d1dxha2          82 V   82 (185)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.71  E-value=0.042  Score=48.81  Aligned_cols=32  Identities=34%  Similarity=0.523  Sum_probs=29.6

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      |++|+|.|++|.+|..++..|+++|.+|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            79999999999999999999999999999874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.69  E-value=0.12  Score=40.66  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             ccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCC--------------------C
Q 022295          145 LFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTT--------------------D  203 (299)
Q Consensus       145 ~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~--------------------~  203 (299)
                      ..++|.....+..+.+..---.|.+|+|+|.|+. |-..+..+...++ .|+++.++..                    +
T Consensus         7 a~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~-g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~   85 (175)
T d1cdoa2           7 CLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAV-GLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSE   85 (175)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSS
T ss_pred             HHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCc-cchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcch
Confidence            3568866666666655544457889999999886 6666666777776 6777765421                    1


Q ss_pred             -hhhhc-----cCCcEEEEecCCCCcCC--CCccCC-CeEEEEeeccC
Q 022295          204 -PESIV-----READIVIAAAGQAMMIK--GSWIKP-GAAVIDVGTNA  242 (299)
Q Consensus       204 -l~~~~-----~~ADIVIsa~g~p~~i~--~~~vk~-gavVIDvg~~~  242 (299)
                       ..+..     ..+|++|-++|.+..+.  ..++++ +.+++=+|.+.
T Consensus        86 ~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~  133 (175)
T d1cdoa2          86 PISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTD  133 (175)
T ss_dssp             CHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCS
T ss_pred             hHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecC
Confidence             11111     24899999998766432  133444 45666566543

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.68  E-value=0.1  Score=41.00  Aligned_cols=53  Identities=13%  Similarity=0.256  Sum_probs=39.5

Q ss_pred             cCCcEEEEEcCCcc--chHHHHHHHhhCCCeEEEE-cCC------------------CCChhhhccCCcEEEEe
Q 022295          165 IKGKRAVVVGRSNI--VGLPVSLLLLKADATVTIV-HSH------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       165 l~gk~vvViG~s~~--vG~pla~lL~~~gatVtv~-~~~------------------t~~l~~~~~~ADIVIsa  217 (299)
                      |+|++|++||-..-  |.+.++.+|..-|++++++ ...                  +.++.+.+++||+|.+-
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            57899999997554  6889999888888875544 311                  24677899999988753

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.68  E-value=0.11  Score=41.12  Aligned_cols=95  Identities=16%  Similarity=0.177  Sum_probs=61.5

Q ss_pred             ccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCC---------------------
Q 022295          145 LFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTT---------------------  202 (299)
Q Consensus       145 ~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~---------------------  202 (299)
                      ..++|...-.+..+.+.+-.-.|.+|+|+|.|+. |-..++++...|+ .|.++.++..                     
T Consensus         7 a~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~-G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~   85 (176)
T d2jhfa2           7 CLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGV-GLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKK   85 (176)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSS
T ss_pred             hHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCc-HHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchh
Confidence            3568876666666555554557999999999985 8888888888885 6777754321                     


Q ss_pred             Chhhhc-----cCCcEEEEecCCCCcCC--CCccCCC-eEEEEeec
Q 022295          203 DPESIV-----READIVIAAAGQAMMIK--GSWIKPG-AAVIDVGT  240 (299)
Q Consensus       203 ~l~~~~-----~~ADIVIsa~g~p~~i~--~~~vk~g-avVIDvg~  240 (299)
                      ...+..     ..+|++|-++|.+..+.  .++++++ .+++=.+.
T Consensus        86 ~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2          86 PIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSC
T ss_pred             HHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecC
Confidence            111111     24799999999887543  3456664 34443443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.68  E-value=0.04  Score=43.38  Aligned_cols=31  Identities=26%  Similarity=0.389  Sum_probs=27.4

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~  200 (299)
                      +|+|||+|-+ |-.+|..|.++|. +|+|+.+.
T Consensus         2 ~V~IIGaG~a-GL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMS-GISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHH-HHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHH-HHHHHHHHHhCCCCcEEEEECC
Confidence            5999998776 9999999999995 79999865

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.07  Score=42.56  Aligned_cols=56  Identities=16%  Similarity=0.223  Sum_probs=45.6

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCcEEEEec
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~ADIVIsa~  218 (299)
                      +|+|++|++||-+..|-..++.++...|++++++...                         +.++.+.++.||+|.+.+
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            4789999999987778888888888889999888643                         346778999999999765


Q ss_pred             C
Q 022295          219 G  219 (299)
Q Consensus       219 g  219 (299)
                      -
T Consensus        81 ~   81 (170)
T d1otha2          81 W   81 (170)
T ss_dssp             S
T ss_pred             e
Confidence            3

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.67  E-value=0.056  Score=46.53  Aligned_cols=33  Identities=21%  Similarity=0.166  Sum_probs=30.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      |+++|.|++|.+|+.++..|+++|.+|+.+.+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            789999999999999999999999999988753

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.63  E-value=0.058  Score=44.74  Aligned_cols=35  Identities=17%  Similarity=0.300  Sum_probs=31.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -.+|+|+|||+|-+ |...|..|.++|.+|+++...
T Consensus        47 ~~~k~VvIIGaGpA-Gl~aA~~l~~~G~~v~l~E~~   81 (233)
T d1djqa3          47 KNKDSVLIVGAGPS-GSEAARVLMESGYTVHLTDTA   81 (233)
T ss_dssp             SSCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCceEEEEcccHH-HHHHHHHHHHhccceeeEeec
Confidence            47899999998887 999999999999999999754

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.064  Score=40.94  Aligned_cols=37  Identities=19%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      .+||+|+|||.|.. +---|.+|.+-..+||++|++.+
T Consensus        25 ~~~k~V~VvGgGds-A~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          25 YRNQKVAVIGGGNT-AVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GTTSEEEEECSSHH-HHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hCCCEEEEECCCHH-HHHHHHHHhhcCCcEEEEeeccc
Confidence            48999999998887 88889999887789999998753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.52  E-value=0.039  Score=41.89  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .|+++|||.|- +|--+|..|.+.|+.||+.++..
T Consensus        25 p~~~viiG~G~-iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGY-IGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSH-HHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccch-HHHHHHHHHHhcCCeEEEEEEcc
Confidence            48999999655 69999999999999999999764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.48  E-value=0.056  Score=47.15  Aligned_cols=36  Identities=17%  Similarity=0.117  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      +-|+|+|+|++|.+|+.++..|+++|.+|++..|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            358999999999999999999999999999987654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.32  E-value=0.046  Score=44.54  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=28.0

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+|||+|-. |-..|..|+++|..|+++.+.
T Consensus         2 ~V~IIGaG~a-GL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGIS-GLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHH-HHHHHHHHHhCCCCEEEEecC
Confidence            6999998776 999999999999999999864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.32  E-value=0.048  Score=44.25  Aligned_cols=37  Identities=27%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+++||+|+|||.|.. |--+|..|...++.++.+.+.
T Consensus        28 ~~~~gK~V~VvG~G~S-a~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSS-GIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHH-HHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCcc-HHHHHHHHHhhhccccccccc
Confidence            4689999999999998 999999999999876666443

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=92.19  E-value=0.047  Score=46.64  Aligned_cols=31  Identities=10%  Similarity=0.304  Sum_probs=28.7

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      .+|+|.|++|.+|+.++..|+++|.+|+.++
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~~V~~id   31 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGIDLIVFD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            3799999999999999999999999999875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.11  E-value=0.096  Score=41.36  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=30.7

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t  201 (299)
                      +..+++|+|||.|.+ |.=.|..|.+.|| +|++.++++
T Consensus        42 p~~~~kVvVIGGGdt-A~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          42 PSIRGAVIVLGAGDT-AFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCCSEEEEECSSHH-HHHHHHHHHHTTCSEEEEECSSC
T ss_pred             ccCCCEEEEECCChh-HHHHHHHHHHcCCcceeEEEeCC
Confidence            446788999997775 9999999999997 688888764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.08  E-value=0.085  Score=45.85  Aligned_cols=30  Identities=30%  Similarity=0.465  Sum_probs=28.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      +|+|+|++|.+|+.++..|+++|.+|+++.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d   31 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEE
Confidence            599999999999999999999999999874

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.64  E-value=0.13  Score=38.20  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=27.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhh---CCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLK---ADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~---~gatVtv~~~~t  201 (299)
                      -..|+++|||.|- +|--+|..|.+   .|..|++..+..
T Consensus        16 ~~p~~v~IiGgG~-ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          16 EAPKRALCVGGGY-ISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             SCCSEEEEECSSH-HHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             ccCCeEEEECCCh-HHHHHHHHhHhhcccccccceecccc
Confidence            3458999999666 59999977554   488999998653

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.31  E-value=0.059  Score=44.99  Aligned_cols=52  Identities=19%  Similarity=0.332  Sum_probs=37.5

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---CC------hhhhcc--CCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---TD------PESIVR--EADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---~~------l~~~~~--~ADIVIsa~g~  220 (299)
                      +|+|.|++|.||+.++..|.++|..|.+..+..   .|      +.+.++  +.|+||.++|.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEeccc
Confidence            699999999999999999999886665554332   12      224444  35999977763

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.31  E-value=0.049  Score=43.50  Aligned_cols=33  Identities=12%  Similarity=0.333  Sum_probs=29.7

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ++++|+|||.|.+ |...|..|++.|+.|+++++
T Consensus         4 k~~dVvIIGGGpa-Gl~AA~~~ar~g~~v~iie~   36 (190)
T d1trba1           4 KHSKLLILGSGPA-GYTAAVYAARANLQPVLITG   36 (190)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHTTTCCCEEECC
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHHcCCceEEEEe
Confidence            6789999998886 99999999999999999974

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.13  E-value=0.15  Score=40.96  Aligned_cols=54  Identities=22%  Similarity=0.314  Sum_probs=37.6

Q ss_pred             cEEEEEcCCccchHHHHH---HHhhC---CCeEEEEcCC--------------------------CCChhhhccCCcEEE
Q 022295          168 KRAVVVGRSNIVGLPVSL---LLLKA---DATVTIVHSH--------------------------TTDPESIVREADIVI  215 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~---lL~~~---gatVtv~~~~--------------------------t~~l~~~~~~ADIVI  215 (299)
                      -|++|||+|. ||.+.+.   ++...   +.++.+.+..                          +.|+.+.++.||+||
T Consensus         3 mKI~iIGaGs-vg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           3 VKIGIIGAGS-AVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CEEEEETTTC-HHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             cEEEEECCCH-HHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            4799999876 4865432   33222   2478888643                          357889999999999


Q ss_pred             EecCCCC
Q 022295          216 AAAGQAM  222 (299)
Q Consensus       216 sa~g~p~  222 (299)
                      ++++.+.
T Consensus        82 ~~~~~g~   88 (171)
T d1obba1          82 NTAMVGG   88 (171)
T ss_dssp             ECCCTTH
T ss_pred             eeccccc
Confidence            9988654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.12  E-value=0.08  Score=44.62  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=26.4

Q ss_pred             cEE-EEEcCCccchHHHHHHHhhCCCe-------EEEEcCC
Q 022295          168 KRA-VVVGRSNIVGLPVSLLLLKADAT-------VTIVHSH  200 (299)
Q Consensus       168 k~v-vViG~s~~vG~pla~lL~~~gat-------Vtv~~~~  200 (299)
                      |+| +|-|+|.-+|+.+|..|+++|+.       |.++.++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~   41 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT   41 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC
Confidence            565 45688887899999999999986       7777665

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=91.00  E-value=0.085  Score=44.59  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=25.8

Q ss_pred             EEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ++|.|+|.-+|+.+|..|+++|++|.++.++
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4555887777999999999999999997654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.99  E-value=0.13  Score=38.87  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..++++|||+|- +|.-+|..|.+.|+.||+..+.
T Consensus        19 ~P~~vvIIGgG~-iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASY-VALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECCCc-cHHHHHHHHhhcCCeEEEEEec
Confidence            347899999766 5999999999999999999754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.94  E-value=0.12  Score=40.12  Aligned_cols=29  Identities=14%  Similarity=0.440  Sum_probs=24.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCe
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADAT  193 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gat  193 (299)
                      ...||+|+|||.|. +|.-+|..|++.|+.
T Consensus        26 ~~~gkrVvVIGgG~-~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          26 APVGNKVAIIGCGG-IGFDTAMYLSQPGES   54 (162)
T ss_dssp             CCCCSEEEEECCHH-HHHHHHHHHTCCSSC
T ss_pred             cccCCceEEEcCch-hHHHHHHHHHHcCCc
Confidence            35699999999766 599999999999975

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=90.79  E-value=0.1  Score=41.23  Aligned_cols=54  Identities=19%  Similarity=0.217  Sum_probs=42.6

Q ss_pred             cCCcEEEEEcC--CccchHHHHHHHhhCCCeEEEEcCC-----------CCChhhhccCCcEEEEec
Q 022295          165 IKGKRAVVVGR--SNIVGLPVSLLLLKADATVTIVHSH-----------TTDPESIVREADIVIAAA  218 (299)
Q Consensus       165 l~gk~vvViG~--s~~vG~pla~lL~~~gatVtv~~~~-----------t~~l~~~~~~ADIVIsa~  218 (299)
                      ++|.++++||-  .+-|.+.++.+|...|+.+++|.-.           +.++.+.++.||+|.+-.
T Consensus         1 F~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           1 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeeeE
Confidence            47899999997  3336999999999999999888632           246778999999988643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.75  E-value=0.13  Score=41.90  Aligned_cols=32  Identities=31%  Similarity=0.369  Sum_probs=26.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhC--CCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA--DATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~--gatVtv~~~~  200 (299)
                      .+|+|||+|.+ |..+|..|.+.  |++||++.+.
T Consensus         2 ~kv~iIGaGpa-Gl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPA-GFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence            38999998887 99999988654  7899999754

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.67  E-value=0.44  Score=35.13  Aligned_cols=69  Identities=17%  Similarity=0.165  Sum_probs=48.0

Q ss_pred             HHHHHHHhhCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCC------------CCChhhhccCC
Q 022295          153 GCLELLKRSGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSH------------TTDPESIVREA  211 (299)
Q Consensus       153 av~~ll~~~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~------------t~~l~~~~~~A  211 (299)
                      -+++.|+....++  |+|.|+|-+         +.-...+...|.+.|+.|.+++-.            ..++.+.+..+
T Consensus         3 ~ii~~l~~~~~~~--k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~s   80 (108)
T d1dlja3           3 QIINVLKEQESPV--KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQA   80 (108)
T ss_dssp             HHHHHHTTSCCSS--CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHC
T ss_pred             HHHHHHHhccCCC--CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhC
Confidence            4566776554444  689999922         222567888899999999988532            24678889999


Q ss_pred             cEEEEecCCCCc
Q 022295          212 DIVIAAAGQAMM  223 (299)
Q Consensus       212 DIVIsa~g~p~~  223 (299)
                      |+||+.+....|
T Consensus        81 DiII~~~~~~~~   92 (108)
T d1dlja3          81 NIIVTNRYDNEL   92 (108)
T ss_dssp             SEEECSSCCGGG
T ss_pred             CEEEEcCCchHH
Confidence            998876655443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.035  Score=47.60  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=28.4

Q ss_pred             CCcEEEEE-cCCccchHHHHHHHhhC-CCeEEEEcCC
Q 022295          166 KGKRAVVV-GRSNIVGLPVSLLLLKA-DATVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvVi-G~s~~vG~pla~lL~~~-gatVtv~~~~  200 (299)
                      +||+|+|| |++.-+|+.+|..|+++ |++|.++.++
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~   37 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD   37 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC
Confidence            58999665 66666799999999876 8999999876

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.56  E-value=0.14  Score=39.33  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=31.1

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT  202 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~  202 (299)
                      .+||+|+|||.|.. +---|..|++--.+||++|++.+
T Consensus        32 frgk~V~VvGgGds-A~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          32 FRNKPLAVIGGGDS-AMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             GTTSEEEEECCSHH-HHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hCCCEEEEEcCchH-HHHHHHHHhCCCCcEEEEEeccc
Confidence            48999999998887 77778888877779999998753

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.55  E-value=0.11  Score=45.05  Aligned_cols=31  Identities=23%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      |+|+|.|++|.+|..++..|+++|.+|+.+.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            7999999999999999999999999999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=90.44  E-value=0.1  Score=43.37  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=27.7

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+|||+|- +|-.+|..|+++|.+|+|+.+.
T Consensus         6 DvvIIGaGi-~Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           6 EAVVIGGGI-IGSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCH-HHHHHHHHHHHCCCcEEEEeCC
Confidence            699999655 5999999999999999999864

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=90.38  E-value=0.73  Score=36.85  Aligned_cols=76  Identities=20%  Similarity=0.188  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEE
Q 022295           22 RSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGI  101 (299)
Q Consensus        22 ~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GI  101 (299)
                      .+.++++++.|.++.|++|+..+-.+|.|.-+. =.+.....++..|+++.+.  ..+.+.+++.+...+-+.|  +-||
T Consensus        20 ~e~lr~~~~~~~~~~gr~pkVlla~~g~D~Hd~-G~~~va~~l~~~G~eVi~l--g~~~~~e~iv~aa~~~~ad--vI~i   94 (168)
T d7reqa2          20 VEEARELVEEFEQAEGRRPRILLAKMGQDGHDR-GQKVIATAYADLGFDVDVG--PLFQTPEETARQAVEADVH--VVGV   94 (168)
T ss_dssp             HHHHHHHHHHHHHHHSSCCEEEEECBTTCCCCH-HHHHHHHHHHHTTCEEEEC--CTTBCHHHHHHHHHHHTCS--EEEE
T ss_pred             HHHHHHHHHHHHHhhCCCCeEEEEeCCccHHHH-HHHHHHHHHHhCCcceecC--CCcCcHHHHHHHHHccCCC--EEEE
Confidence            368888888887777999999999999776443 3456778999999876554  5568999999999887543  4444


Q ss_pred             E
Q 022295          102 L  102 (299)
Q Consensus       102 l  102 (299)
                      =
T Consensus        95 S   95 (168)
T d7reqa2          95 S   95 (168)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.37  E-value=0.12  Score=44.90  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=27.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~  200 (299)
                      |+|+|||+|.. |-.+|..|+++|.  .|++..++
T Consensus         5 KrVaIIGaG~s-Gl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPS-GLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            89999998887 9999988888774  89999765

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.34  E-value=0.091  Score=41.01  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=26.6

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      ++++|+|||.|.+ |--+|..|.+.|++|++..
T Consensus         2 ~~~~VvIIGgG~~-G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVGTGLA-GVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEECCcHH-HHHHHHHHHHcCCceEEEE
Confidence            4689999997775 9999999999998666653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.31  E-value=0.12  Score=42.30  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=28.0

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT  201 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t  201 (299)
                      +|+|||+|-+ |-.+|.+|.+.|. .|+|..+.+
T Consensus         3 ~V~IvGaG~a-Gl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIG-GLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHH-HHHHHHHHHhCCCCeEEEEeCCC
Confidence            7999998775 9999999999995 899998753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.1  Score=43.84  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=27.7

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+|||+|-. |-..|..|+++|..|+|+.++
T Consensus         1 DViVIGaG~a-GL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           1 DVVVVGGGIS-GMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             SEEEECCBHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHH-HHHHHHHHHhCCCCEEEEecC
Confidence            4899998776 999999999999999999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.85  E-value=0.24  Score=39.44  Aligned_cols=96  Identities=16%  Similarity=0.166  Sum_probs=59.0

Q ss_pred             ccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCC-------------------C-
Q 022295          145 LFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTT-------------------D-  203 (299)
Q Consensus       145 ~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~-------------------~-  203 (299)
                      +.+.|.-.-.+..+-+..-.-.|.+|+|+|.|+ +|...++.+...|+ +|+++.+...                   + 
T Consensus         6 a~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGg-vGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~   84 (174)
T d1p0fa2           6 CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGG-VGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDK   84 (174)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSS
T ss_pred             HhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCc-hhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchh
Confidence            345665444454444444456789999999987 59999998888897 6777765421                   1 


Q ss_pred             -hhhhc-----cCCcEEEEecCCCCcC--CCCccCC-CeEEEEeecc
Q 022295          204 -PESIV-----READIVIAAAGQAMMI--KGSWIKP-GAAVIDVGTN  241 (299)
Q Consensus       204 -l~~~~-----~~ADIVIsa~g~p~~i--~~~~vk~-gavVIDvg~~  241 (299)
                       ..+..     ..+|++|-++|.+..+  ....+++ +-.++=+|..
T Consensus        85 ~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2          85 PIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEe
Confidence             12221     2479999999877643  2233443 3344445543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.098  Score=43.92  Aligned_cols=35  Identities=26%  Similarity=0.442  Sum_probs=31.0

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~  200 (299)
                      |+.++|+|+|.|++ |-+++..|+..|. ++++++..
T Consensus        28 L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGL-GCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEECCc
Confidence            57799999999995 9999999999996 89999743

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.82  E-value=0.13  Score=44.37  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=29.1

Q ss_pred             cEE-EEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          168 KRA-VVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       168 k~v-vViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      |+| +|.|++|.+|..++..|+++|++|+.+.+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r   33 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVR   33 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            678 89999999999999999999999988765

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.80  E-value=0.13  Score=43.07  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSH  200 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~  200 (299)
                      +.|+|+|.|++.-+|+.+|+.|+++|+  .|..+.|+
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~   38 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCC
Confidence            468999999998899999999999997  46666554

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=89.73  E-value=0.23  Score=42.75  Aligned_cols=52  Identities=21%  Similarity=0.335  Sum_probs=39.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCC----------------------C-hhhhccCCcEEEEecCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTT----------------------D-PESIVREADIVIAAAGQ  220 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~----------------------~-l~~~~~~ADIVIsa~g~  220 (299)
                      +|+|.|++|.+|+.++..|+++| .+|+.+++.+.                      + .+.+.+++|+||-.++.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            69999999999999999999888 58888754211                      1 22367789999976664

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.67  E-value=0.11  Score=45.28  Aligned_cols=31  Identities=16%  Similarity=0.283  Sum_probs=28.9

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVH  198 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~  198 (299)
                      |.|+|.|++|.+|+.++..|+++|.+|+++.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d   32 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVAD   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEE
Confidence            7789999999999999999999999999884

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=89.63  E-value=0.13  Score=43.71  Aligned_cols=54  Identities=17%  Similarity=0.282  Sum_probs=39.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-C------hhhhc--cCCcEEEEecCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-D------PESIV--READIVIAAAGQ  220 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-~------l~~~~--~~ADIVIsa~g~  220 (299)
                      -|+|+|.|++|.+|+.++..|+++|..|.++..+.. +      +.+.+  ...|.|+-+.+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhccccCHHHHHHHHhhcCCCEEEEcchh
Confidence            479999999999999999999999998877743321 1      22333  235888876653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.62  E-value=0.18  Score=38.38  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=30.5

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+||+|+|||.|.. +---|..|.+-..+||++|+..
T Consensus        28 ~~gk~V~VvGgG~s-A~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          28 FKGKRVAVIGGGNS-GVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GBTCEEEEECCSHH-HHHHHHHHHTTBSEEEEECSSS
T ss_pred             cCCceEEEEeCCHH-HHHHHHhhhccCCceEEEeccc
Confidence            58999999998876 7777888888777999999874

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.35  E-value=0.15  Score=44.00  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      .+-|+++|.|++|.+|+.++..|.++|.+|+.+.+
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            34589999999999999999999999999998853

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.33  E-value=0.13  Score=41.72  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=27.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCC-------CeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKAD-------ATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~g-------atVtv~~~~  200 (299)
                      .+|+|||+|.+ |-.+|..|+++|       ..|++..+.
T Consensus         3 ~~VaVIGaGpa-GL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           3 YYIAIVGSGPS-AFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             cEEEEECcCHH-HHHHHHHHHHcCCccccCCCceEEEecC
Confidence            58999999888 999999998887       479999753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.10  E-value=0.21  Score=38.60  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=26.7

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++|+|.|.. |+.++..|..+|..|++....
T Consensus         5 HiII~G~g~~-g~~l~~~L~~~~~~v~vId~d   35 (153)
T d1id1a_           5 HFIVCGHSIL-AINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHH-HHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCHH-HHHHHHHHHHcCCCEEEEecc
Confidence            6999998885 999999999999988888643

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=88.84  E-value=0.26  Score=39.69  Aligned_cols=55  Identities=18%  Similarity=0.178  Sum_probs=42.5

Q ss_pred             CcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCcEEEEe
Q 022295          164 TIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREADIVIAA  217 (299)
Q Consensus       164 ~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~ADIVIsa  217 (299)
                      +++|.+++.+|-+ ..|...++.++..-|+++++|.-.                         +.++.+.++.||+|.+-
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4678889999954 346888888888889999888632                         34677899999999864


Q ss_pred             c
Q 022295          218 A  218 (299)
Q Consensus       218 ~  218 (299)
                      +
T Consensus        82 ~   82 (183)
T d1duvg2          82 V   82 (183)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=88.73  E-value=0.41  Score=37.46  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=39.7

Q ss_pred             cCCcEEEEEcCCcc--chHHHHHHHhhCC-CeEEEEcCC---------------------CCChhhhccCCcEEEEecC
Q 022295          165 IKGKRAVVVGRSNI--VGLPVSLLLLKAD-ATVTIVHSH---------------------TTDPESIVREADIVIAAAG  219 (299)
Q Consensus       165 l~gk~vvViG~s~~--vG~pla~lL~~~g-atVtv~~~~---------------------t~~l~~~~~~ADIVIsa~g  219 (299)
                      ++|.+|+.||-+.-  |.+.+..+|...| ..+++|...                     +.++.+.+++||+|.+...
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~   80 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV   80 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeecc
Confidence            57888888886554  6778887777775 456666421                     4577889999999986543

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=88.62  E-value=0.32  Score=41.50  Aligned_cols=47  Identities=32%  Similarity=0.385  Sum_probs=36.8

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------ChhhhccCCcEEE
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------DPESIVREADIVI  215 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------~l~~~~~~ADIVI  215 (299)
                      ..+|++|+|||.-     |....+.++++.++|+.++..       .-.+.+.+||+||
T Consensus       119 ~~~g~kV~vIG~~-----P~v~~l~~~~~~~~VlE~~p~~gd~p~~~~~~lLp~aD~vi  172 (251)
T d2h1qa1         119 EVKGKKVGVVGHF-----PHLESLLEPICDLSILEWSPEEGDYPLPASEFILPECDYVY  172 (251)
T ss_dssp             TTTTSEEEEESCC-----TTHHHHHTTTSEEEEEESSCCTTCEEGGGHHHHGGGCSEEE
T ss_pred             ccCCCEEEEEecc-----hhHHHHHhcCCcEEEEeCCCCCCCCCchHHHHhhhcCCEEE
Confidence            3579999999962     566667888999999988753       2346799999988

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.29  E-value=0.12  Score=43.10  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=29.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .++|-|+|.-+|+.+|..|+++|++|.++.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~   35 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHS   35 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            367889988889999999999999999998763

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.18  E-value=0.2  Score=41.81  Aligned_cols=36  Identities=14%  Similarity=0.206  Sum_probs=30.1

Q ss_pred             cEEEEEcCCccchHHHHHHHh---hCCCeEEEEcCCCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLL---KADATVTIVHSHTTD  203 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~---~~gatVtv~~~~t~~  203 (299)
                      |+|+|.|+|.-+|+.+|..|+   ++|++|+++.++...
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~   41 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   41 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            789999998888999998875   578999999876543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.17  E-value=0.16  Score=43.77  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+++|||+|-+ |-.+|..|+++|..|+|..++.
T Consensus         2 ~dv~IIGaG~s-Gl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           2 YDYIIVGSGLF-GAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEEECCSHH-HHHHHHHHGGGTCCEEEECSSS
T ss_pred             ccEEEECCcHH-HHHHHHHHHhCCCcEEEEECCC
Confidence            37899998876 9999999999999999998653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.09  E-value=0.15  Score=43.08  Aligned_cols=32  Identities=25%  Similarity=0.256  Sum_probs=28.9

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +++|-|+|.-+|+.+|..|+++|++|.++.++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~   33 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDES   33 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57899999888999999999999999998754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.02  E-value=0.38  Score=39.00  Aligned_cols=84  Identities=19%  Similarity=0.148  Sum_probs=53.8

Q ss_pred             HHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-------------------CCChhh----hcc--C
Q 022295          157 LLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-------------------TTDPES----IVR--E  210 (299)
Q Consensus       157 ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-------------------t~~l~~----~~~--~  210 (299)
                      .++..++ -.|.+|+|+|+|. +|...++++...|+ .|+++.+.                   ..++.+    .+.  .
T Consensus        17 a~~~a~v-~~G~tVlV~GaG~-vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g   94 (195)
T d1kola2          17 GAVTAGV-GPGSTVYVAGAGP-VGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPE   94 (195)
T ss_dssp             HHHHTTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             HHHHhCC-CCCCEEEEECcCH-HHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCC
Confidence            3555555 3689999999976 59888888877887 56666533                   223322    222  4


Q ss_pred             CcEEEEecCCCCc---------------CC--CCccCCCeEEEEeeccC
Q 022295          211 ADIVIAAAGQAMM---------------IK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       211 ADIVIsa~g~p~~---------------i~--~~~vk~gavVIDvg~~~  242 (299)
                      +|++|-++|.+..               +.  -+.+++|-.|+=+|...
T Consensus        95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~  143 (195)
T d1kola2          95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV  143 (195)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence            7999999885421               10  12357787787788643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.93  E-value=0.13  Score=43.08  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=28.1

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+|||+|. +|-.+|..|.+.|..|+|..++
T Consensus         4 ~V~IvGaGp-~Gl~~A~~L~~~G~~v~vlE~~   34 (292)
T d1k0ia1           4 QVAIIGAGP-SGLLLGQLLHKAGIDNVILERQ   34 (292)
T ss_dssp             SEEEECCSH-HHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECcCH-HHHHHHHHHHHCCCCEEEEeCC
Confidence            699999876 5999999999999999999865

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.02  E-value=0.47  Score=36.41  Aligned_cols=37  Identities=27%  Similarity=0.250  Sum_probs=30.0

Q ss_pred             CcCCcEEEEE--cCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          164 TIKGKRAVVV--GRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       164 ~l~gk~vvVi--G~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      ..-++.++|+  |.|- +|--+|..|+++|++||++.+..
T Consensus        36 ~~~~~~vvi~d~ggg~-ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          36 KKIGKRVVILNADTYF-MAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             SCCCSEEEEEECCCSS-HHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cccCCceEEEecCCCh-HHHHHHHHHHHcCCeEEEEecCC
Confidence            3457788887  6444 69999999999999999998653

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.02  E-value=1.5  Score=33.60  Aligned_cols=63  Identities=22%  Similarity=0.133  Sum_probs=46.4

Q ss_pred             HHHHHHHHhhCCCcCCcEEEEEcCCc---cchHHHHHHHhhCCCeEEEEcCCC---------CChhhhccCCcEEEEecC
Q 022295          152 KGCLELLKRSGVTIKGKRAVVVGRSN---IVGLPVSLLLLKADATVTIVHSHT---------TDPESIVREADIVIAAAG  219 (299)
Q Consensus       152 ~av~~ll~~~~~~l~gk~vvViG~s~---~vG~pla~lL~~~gatVtv~~~~t---------~~l~~~~~~ADIVIsa~g  219 (299)
                      .-+.++|.+      -|+|+|||+|.   -.|.-++..|.+.|.+|+-+|.+.         +++.+.-..-|+++.+++
T Consensus        10 ~~i~~~L~~------~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp   83 (139)
T d2d59a1          10 EDIREILTR------YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVK   83 (139)
T ss_dssp             HHHHHHHHH------CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSC
T ss_pred             HHHHHHHhc------CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeC
Confidence            445566643      38999999883   457888888999999999998763         356565556788887776


Q ss_pred             C
Q 022295          220 Q  220 (299)
Q Consensus       220 ~  220 (299)
                      .
T Consensus        84 ~   84 (139)
T d2d59a1          84 P   84 (139)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.75  E-value=0.17  Score=43.47  Aligned_cols=30  Identities=23%  Similarity=0.336  Sum_probs=24.2

Q ss_pred             cEEEEE-cCCccchHHHHHHHhhCCCeEEEE
Q 022295          168 KRAVVV-GRSNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       168 k~vvVi-G~s~~vG~pla~lL~~~gatVtv~  197 (299)
                      |+|++| |+|.-+|+.+|..|+++|+.|..+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v   32 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKV   32 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEE
Confidence            566655 888778999999999999975544

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.73  E-value=0.9  Score=33.82  Aligned_cols=53  Identities=17%  Similarity=0.227  Sum_probs=39.6

Q ss_pred             cEEEEEcCCcc---chHHHHHHHhhCCCeEEEEcCCC---------CChhhhccCCcEEEEecCC
Q 022295          168 KRAVVVGRSNI---VGLPVSLLLLKADATVTIVHSHT---------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       168 k~vvViG~s~~---vG~pla~lL~~~gatVtv~~~~t---------~~l~~~~~~ADIVIsa~g~  220 (299)
                      |+|.|||+|.-   .|.-+...|++.|.+|+-+|.+.         +++.+.-..-|+++.+++.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~   66 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP   66 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCH
Confidence            78999998743   56777788889999999998653         3455655566888877764

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.68  E-value=0.3  Score=37.38  Aligned_cols=47  Identities=15%  Similarity=0.210  Sum_probs=34.3

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEe
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAA  217 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa  217 (299)
                      ++.|+|++|-.|+.++..+.++|.++...-  ..+..+.+.++|+||=-
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~i--d~~~~~~~~~~DVvIDF   48 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKV--DVNGVEELDSPDVVIDF   48 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE--ETTEEEECSCCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEE--CCCcHHHhccCCEEEEe
Confidence            689999866679999999999998765432  12334567788988843

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.64  E-value=0.21  Score=39.81  Aligned_cols=33  Identities=12%  Similarity=0.242  Sum_probs=28.9

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ..++|+|||.|.+ |...|..|.+.|++|+++..
T Consensus         4 ~~~~VvIIGgGpa-Gl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           4 HNTRLCIVGSGPA-AHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHHTTCCCEEECC
T ss_pred             ccceEEEECCCHH-HHHHHHHHHHcCCcEEEEEe
Confidence            4589999998886 99999999999999999863

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.62  E-value=0.15  Score=44.30  Aligned_cols=30  Identities=17%  Similarity=0.339  Sum_probs=26.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEE
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIV  197 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~  197 (299)
                      |+|+|.|++|.||+.++..|+++|..|+++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~   32 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVT   32 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            789999999999999999999998765444

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=86.62  E-value=0.28  Score=40.83  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=28.0

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..|+|||+|- +|-.+|..|+++|.+|++..+.
T Consensus         4 yDvvIIGaGi-~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           4 FDVIVVGAGS-MGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEEECCSH-HHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCH-HHHHHHHHHHHCCCcEEEEeCC
Confidence            4699999655 5999999999999999999865

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=86.57  E-value=0.22  Score=40.64  Aligned_cols=31  Identities=19%  Similarity=0.304  Sum_probs=27.6

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+|||+|.+ |-.+|..|+++|.+|+++.+.
T Consensus         4 DViIIGaG~a-Gl~aA~~la~~G~~V~liEk~   34 (251)
T d2i0za1           4 DVIVIGGGPS-GLMAAIGAAEEGANVLLLDKG   34 (251)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            6899998775 999999999999999999754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=86.37  E-value=0.23  Score=41.86  Aligned_cols=31  Identities=23%  Similarity=0.356  Sum_probs=26.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~  200 (299)
                      +|+|||+|- +|-.+|..|+++|. +|+++.+.
T Consensus         3 dViIIGaGi-~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGI-VGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSH-HHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCH-HHHHHHHHHHHcCCCcEEEEeCC
Confidence            699999665 59999999999995 79999765

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=86.21  E-value=0.26  Score=40.84  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT  201 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t  201 (299)
                      .+|+|||+|.+ |..+|..|+++|.+|+++.+..
T Consensus         5 ~DViIIGaG~a-Gl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGAGAA-GLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcEEEECcCHH-HHHHHHHHHHCCCcEEEEecCC
Confidence            46999998886 9999999999999999998654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.60  E-value=0.33  Score=37.61  Aligned_cols=31  Identities=10%  Similarity=0.257  Sum_probs=27.6

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      +|+|||.|.+ |...|..+.+.|.+|++.+++
T Consensus         3 DViIIGgGpa-Gl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPA-GAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHH-HHHHHHHHHHcCCeEEEEEEe
Confidence            6999998876 999999999999999999853

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=84.80  E-value=4.7  Score=30.25  Aligned_cols=103  Identities=14%  Similarity=0.080  Sum_probs=63.5

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC--CeEEEEcCC-CCChhhhccCCcEEEEecCCCCcCCCCccC----CCe-EEEEeec
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSH-TTDPESIVREADIVIAAAGQAMMIKGSWIK----PGA-AVIDVGT  240 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~-t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk----~ga-vVIDvg~  240 (299)
                      +|++.|--.. -+|....+..++  .+|+.+... +.++.+.++.||.|++....  .++.+.+.    ++- +|.=.|.
T Consensus         2 KI~~f~~~~~-e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~--~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIRED-EKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQL--DYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGG-GHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSS--CBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccc-cHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCC--CcCHHHHhhhcccCeeEEEEccC
Confidence            6778877664 788887777665  455555432 45677889999988764322  25666653    232 2322221


Q ss_pred             cCCCCCccCCCceeeccCCchhhhhhhceeccCCC-CccHHHHHHHHH
Q 022295          241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPG-GVGPMTVAMLLR  287 (299)
Q Consensus       241 ~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPG-GVGp~T~a~L~~  287 (299)
                      -+             --+|.+.+.++--.+|-+|| ++...|.++++.
T Consensus        79 G~-------------d~ID~~aa~~~gI~V~N~P~~svae~a~~~ml~  113 (134)
T d1j4aa2          79 GV-------------DNIDMAKAKELGFQITNVPVYSYTTHAVRNMVV  113 (134)
T ss_dssp             CC-------------TTBCHHHHHHTTCEEECCCCSCCBHHHHHHHHH
T ss_pred             Cc-------------CccCHHHHHhCCeEEEECCCCcHHHHHHHHHHH
Confidence            11             12566777777667777886 566778777764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.56  E-value=0.33  Score=44.49  Aligned_cols=36  Identities=14%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT  201 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t  201 (299)
                      |++++|+|||.|++ |-.++..|...|. ++++++..+
T Consensus        35 l~~~kVlvvG~Ggl-G~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          35 LDTCKVLVIGAGGL-GCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHHCCEEEECSSTT-HHHHHHHHHTTTCCCEEEECCCB
T ss_pred             HhcCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEECCC
Confidence            35678999999995 9999999999996 899997654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.50  E-value=0.2  Score=42.07  Aligned_cols=31  Identities=32%  Similarity=0.331  Sum_probs=26.2

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      -|+|.|+|.-+|+.+|..|+++|++|.++.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~   33 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYA   33 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            3667788888899999999999999988643

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.38  E-value=0.37  Score=41.65  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=30.4

Q ss_pred             cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+.-+|+|||+|-. |-.+|..|.++|..|+|+.+.
T Consensus         5 ~~~~dV~IIGAG~s-Gl~~a~~L~~~G~~v~i~Ek~   39 (298)
T d1w4xa1           5 PEEVDVLVVGAGFS-GLYALYRLRELGRSVHVIETA   39 (298)
T ss_dssp             CSEEEEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCEEEECccHH-HHHHHHHHHhCCCCEEEEEcC
Confidence            35568999999887 999999999999999999753

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.08  E-value=0.34  Score=40.97  Aligned_cols=32  Identities=22%  Similarity=0.386  Sum_probs=28.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -.|+|||.|.+ |-..|..|+++|++|+++.+.
T Consensus        17 ~DVlVIG~G~a-Gl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          17 VDVVVVGSGGA-GFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCcEEEEecC
Confidence            47999997776 999999999999999999754

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=84.03  E-value=1.1  Score=37.52  Aligned_cols=72  Identities=22%  Similarity=0.187  Sum_probs=52.1

Q ss_pred             cCC-cEEEEEcCCccchHHHHHHHhhC------CCeEEEEcCCC-C------------------ChhhhccCCcEEEEec
Q 022295          165 IKG-KRAVVVGRSNIVGLPVSLLLLKA------DATVTIVHSHT-T------------------DPESIVREADIVIAAA  218 (299)
Q Consensus       165 l~g-k~vvViG~s~~vG~pla~lL~~~------gatVtv~~~~t-~------------------~l~~~~~~ADIVIsa~  218 (299)
                      ++| |+|.|||.|.- |++=|+-|...      |..|+|--+.. +                  +..|.++.||||...+
T Consensus        41 ~kg~KkIaViGYGsQ-G~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQ-APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             TTTCSEEEEECCSSH-HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred             hcCCCEEEEEEeccH-HHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence            688 99999999986 99999999884      46687774331 1                  2458899999999988


Q ss_pred             CC---CCcCC--CCccCCCeEEEE
Q 022295          219 GQ---AMMIK--GSWIKPGAAVID  237 (299)
Q Consensus       219 g~---p~~i~--~~~vk~gavVID  237 (299)
                      +.   +.+..  ..+++||+.+.-
T Consensus       120 PDe~Q~~vy~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         120 SDSAQADNYEKVFSHMKPNSILGL  143 (226)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             chHHHHHHHHHHHHhcCCCceeee
Confidence            73   22322  125788977654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.80  E-value=0.78  Score=36.90  Aligned_cols=70  Identities=20%  Similarity=0.265  Sum_probs=44.8

Q ss_pred             EEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC---------------------------------CChhhhccCCcEE
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT---------------------------------TDPESIVREADIV  214 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t---------------------------------~~l~~~~~~ADIV  214 (299)
                      +|.|.|.|.+ ||.+++.|..+. .+|.-.+..+                                 .++.+...++|+|
T Consensus         3 KVaINGfGRI-GR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTI-GKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHH-HHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECCCHH-HHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            6899999986 999999998764 5655554321                                 1344556689999


Q ss_pred             EEecCCCCc--CCCCccCCCeEEEEee
Q 022295          215 IAAAGQAMM--IKGSWIKPGAAVIDVG  239 (299)
Q Consensus       215 Isa~g~p~~--i~~~~vk~gavVIDvg  239 (299)
                      |-+||.-.-  --+.+++.|.-+|=.|
T Consensus        82 iecTG~f~~~e~a~~hl~~G~KvIi~~  108 (178)
T d1b7go1          82 VDTTPNGVGAQYKPIYLQLQRNAIFQG  108 (178)
T ss_dssp             EECCSTTHHHHHHHHHHHTTCEEEECT
T ss_pred             EECCCCcCCHHHHHHHHHcCCEEEEEC
Confidence            999996321  1123345564454344

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.44  E-value=1.4  Score=33.32  Aligned_cols=56  Identities=23%  Similarity=0.233  Sum_probs=40.7

Q ss_pred             cCCcEEEEEcCC---ccchHHHHHHHhhCC-CeEEEEcCCC---------CChhhhccCCcEEEEecCC
Q 022295          165 IKGKRAVVVGRS---NIVGLPVSLLLLKAD-ATVTIVHSHT---------TDPESIVREADIVIAAAGQ  220 (299)
Q Consensus       165 l~gk~vvViG~s---~~vG~pla~lL~~~g-atVtv~~~~t---------~~l~~~~~~ADIVIsa~g~  220 (299)
                      +.-|.|+|||+|   +-.|.-+...|.+.+ ..|+-+|.+.         +++.+.=...|+++.+++.
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp~   74 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPK   74 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecCh
Confidence            456899999998   556777888887665 4899998653         3455555567888877764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=0.55  Score=35.61  Aligned_cols=44  Identities=11%  Similarity=0.130  Sum_probs=32.4

Q ss_pred             HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHh----hCCCeEEEEcCCC
Q 022295          151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL----KADATVTIVHSHT  201 (299)
Q Consensus       151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~----~~gatVtv~~~~t  201 (299)
                      +..+.+.++      .+|+++|||.|- +|--+|..|.    +.|..||+.++..
T Consensus        27 ~~~l~~~~~------~~k~i~IvGgG~-~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          27 FRSLEKISR------EVKSITIIGGGF-LGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             HHHHHHHHH------HCSEEEEECCSH-HHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             HHHHHHHhh------cCCEEEEECCCH-HHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            344555554      368999999766 4999988885    4588999998754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=83.10  E-value=0.48  Score=37.86  Aligned_cols=32  Identities=6%  Similarity=0.090  Sum_probs=28.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -.++|||+|.+ |..+|..+++.|.+|+++.+.
T Consensus         3 yDvvVIG~G~a-G~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           3 YDYIAIGGGSG-GIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTTTCCEEEEESS
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCEEEEEecc
Confidence            36899998887 999999999999999999753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.61  E-value=0.97  Score=33.16  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=27.1

Q ss_pred             CCcEEEEEcCCccchHHHHHHHhh---CCCeEEEEcCCC
Q 022295          166 KGKRAVVVGRSNIVGLPVSLLLLK---ADATVTIVHSHT  201 (299)
Q Consensus       166 ~gk~vvViG~s~~vG~pla~lL~~---~gatVtv~~~~t  201 (299)
                      ..|+++|||.|- +|--+|..|.+   +|..||++++..
T Consensus        19 ~p~~v~ivGgG~-ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          19 PPRRVLTVGGGF-ISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CCSEEEEECSSH-HHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             cCCeEEEECCcH-HHHHHHHHhhhcccCCcEEEEEeccc
Confidence            468999999766 59999976654   456899998764

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=82.18  E-value=0.27  Score=41.94  Aligned_cols=41  Identities=34%  Similarity=0.298  Sum_probs=32.8

Q ss_pred             CChhhhccCCcEEEEecCCCCc----CC--CCccCCCeEEEEeeccC
Q 022295          202 TDPESIVREADIVIAAAGQAMM----IK--GSWIKPGAAVIDVGTNA  242 (299)
Q Consensus       202 ~~l~~~~~~ADIVIsa~g~p~~----i~--~~~vk~gavVIDvg~~~  242 (299)
                      .+..+.+++||+||++++.+..    ++  .+.+++|++++|.+...
T Consensus       133 ~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~  179 (242)
T d2b0ja2         133 SDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIP  179 (242)
T ss_dssp             SCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSC
T ss_pred             CCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCc
Confidence            3678999999999999987653    22  36789999999998753

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=82.18  E-value=0.35  Score=40.68  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=30.1

Q ss_pred             CcCCcEEEEEcCCccchHHHHHHHhh-CCCeEEEEcCC
Q 022295          164 TIKGKRAVVVGRSNIVGLPVSLLLLK-ADATVTIVHSH  200 (299)
Q Consensus       164 ~l~gk~vvViG~s~~vG~pla~lL~~-~gatVtv~~~~  200 (299)
                      .....+|+|||+|-. |-.+|..|++ .|.+|++..+.
T Consensus        30 ~~~e~DViVIGaGpa-GL~aA~~LA~~~G~~V~vlE~~   66 (278)
T d1rp0a1          30 TYAETDVVVVGAGSA-GLSAAYEISKNPNVQVAIIEQS   66 (278)
T ss_dssp             HHTEEEEEEECCSHH-HHHHHHHHHTSTTSCEEEEESS
T ss_pred             cccCCCEEEECCCHH-HHHHHHHHHHccCCeEEEEecC
Confidence            445688999998876 9999998876 59999999854

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=82.12  E-value=0.52  Score=39.82  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=27.6

Q ss_pred             cEEEEEcCCccchHHHHHHHh-----hCCCeEEEEcCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLL-----KADATVTIVHSHT  201 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~-----~~gatVtv~~~~t  201 (299)
                      -.|+|||+|- +|-.+|.+|+     ++|..|+|..++.
T Consensus         8 yDV~IvGaG~-aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGP-AGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSH-HHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCEEEECcCH-HHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            4799999766 5999999996     5789999998753

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=82.12  E-value=0.53  Score=39.10  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=27.7

Q ss_pred             CcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295          167 GKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH  200 (299)
Q Consensus       167 gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~  200 (299)
                      ++.++|.|+++-+|+.+|..|+++|+ .|.++.|+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~   43 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRS   43 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            45899999888889999999999998 47767553

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.99  E-value=0.55  Score=37.53  Aligned_cols=32  Identities=13%  Similarity=0.223  Sum_probs=28.6

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .+|+|||.|.+ |...|..|++.|.+|++..++
T Consensus         6 yDviVIG~GpA-Gl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           6 HDVVIIGGGPA-GYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             cCEEEECCCHH-HHHHHHHHHHCCCcEEEEEec
Confidence            47999998887 999999999999999999754

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=81.52  E-value=0.53  Score=37.04  Aligned_cols=69  Identities=23%  Similarity=0.351  Sum_probs=46.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhC-CCeE-EEEcCCC-----------CChhhhccCCcEEEEecCCC-Cc-CCCCccCCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKA-DATV-TIVHSHT-----------TDPESIVREADIVIAAAGQA-MM-IKGSWIKPG  232 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~-gatV-tv~~~~t-----------~~l~~~~~~ADIVIsa~g~p-~~-i~~~~vk~g  232 (299)
                      -+|.|+|.|.+ |+..+..|.+. +.++ .+++++.           .+..+...+.|+|+.+|+.. |+ +-...++.|
T Consensus         4 irvgiiG~G~i-g~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~aL~aG   82 (170)
T d1f06a1           4 IRVAIVGYGNL-GRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFAQF   82 (170)
T ss_dssp             EEEEEECCSHH-HHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHHHTTT
T ss_pred             ceEEEECChHH-HHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccHHHHHHHHHCC
Confidence            47999999875 99999888765 4554 3555442           24556678899999998743 32 333446677


Q ss_pred             eEEEE
Q 022295          233 AAVID  237 (299)
Q Consensus       233 avVID  237 (299)
                      .-||+
T Consensus        83 ~~vv~   87 (170)
T d1f06a1          83 ACTVD   87 (170)
T ss_dssp             SEEEC
T ss_pred             CcEEE
Confidence            66664

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=80.97  E-value=0.51  Score=40.29  Aligned_cols=32  Identities=22%  Similarity=0.398  Sum_probs=28.4

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      -.|+|||.|.+ |-.+|..|+++|++|.++.+.
T Consensus        24 ~DVvVIG~G~a-Gl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          24 TDVVIIGSGGA-GLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             CSEEEECSSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             ceEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            46999998776 999999999999999999754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=80.33  E-value=0.48  Score=37.74  Aligned_cols=32  Identities=13%  Similarity=0.199  Sum_probs=28.3

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      ..|+|||.|.+ |..+|..+++.|.+|++..+.
T Consensus         4 yDvvVIGgGpa-Gl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           4 NDVVIIGGGPG-GYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHHTCCEEEEECS
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCcEEEEEec
Confidence            46999998887 999999999999999999754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.32  E-value=0.75  Score=37.03  Aligned_cols=31  Identities=19%  Similarity=0.241  Sum_probs=28.2

Q ss_pred             cEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ..|+|||+|.. |..+|..+++.|.+|.++..
T Consensus         4 YDviVIG~Gpa-Gl~aA~~aa~~G~kV~viE~   34 (235)
T d1h6va1           4 FDLIIIGGGSG-GLAAAKEAAKFDKKVMVLDF   34 (235)
T ss_dssp             EEEEEECCSHH-HHHHHHHHGGGCCCEEEECC
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCeEEEEec
Confidence            47999998887 99999999999999999974

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.10  E-value=0.77  Score=34.92  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=24.3

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHS  199 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~  199 (299)
                      ||+|||.|-+ |--+|..|. ++..||++++
T Consensus         2 rVvIIGgG~~-G~e~A~~l~-~~~~Vtvv~~   30 (167)
T d1xhca1           2 KVVIVGNGPG-GFELAKQLS-QTYEVTVIDK   30 (167)
T ss_dssp             EEEEECCSHH-HHHHHHHHT-TTSEEEEECS
T ss_pred             eEEEECCcHH-HHHHHHHHH-cCCCEEEEec
Confidence            7999997764 999999886 4679999975

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=80.10  E-value=0.59  Score=39.74  Aligned_cols=31  Identities=13%  Similarity=0.230  Sum_probs=27.7

Q ss_pred             EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295          169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH  200 (299)
Q Consensus       169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~  200 (299)
                      .|+|||.|.+ |-..|..|+++|++|+++...
T Consensus         7 DVvVIG~G~A-Gl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           7 DSLVIGGGLA-GLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             SEEEECCSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCCEEEEecC
Confidence            5999998877 999999999999999999754