Citrus Sinensis ID: 022315

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGVRGKDTIDTSGRGTVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQLQSQVRNRKCSPNVNEVACKGDAEQVPRKKLKTSIYSSHSSLKHGSCREGSVSNGIDSKSLDAALSEKEMSNFKKNCAHCHCQNTSQLTSPNGPKSLCDGCISSYGKDKDLHSDSNIGADKENGEVDDDLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTVVSRCRSFGN
Secondary Structure (PSIPRED)
cccccccEEEcccccccccccccccccHHHHHHHHHHccccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHccccccccEEccccccccccccccccccccHEEEccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MSEASKSLLastdhgqlgpigpdyfgFYTCEIMELlsqdedplpstsrtseltrkkcsgvrgkdtidtsgrgtvssfsnsigagftdFKKERLRSLLRQgvfdlapevdemlDPVIAMCQLQSqvrnrkcspnvnevackgdaeqvprkklktsiysshsslkhgscregsvsngidskSLDAALSEKEMSnfkkncahchcqntsqltspngpkslcdgcissygkdkdlhsdsnigadkengevddDLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTVVSRCRSFGN
Flexible Loop (DISEMBL)
MSEASKSLlastdhgqlgpIGPDYFGFYTCEIMELLsqdedplpstsrtseltrkkcsgvrgkdtidtsgrgtvssfsnsigagftDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQLQSqvrnrkcspnvnevackgdaeqvprkklktsiysshsslkhgscregsvsngIDSKSLDAALSEKEMSNFKKNCAHCHCQNtsqltspngpkSLCDGCISSYGKDKDLHSDSNIGADKENGEVDDDLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTVVSRCRSFGN
Low Complexity Region (SEG)
MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGVRGKDTIDTSGRGTVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQLQSQVRNRKCSPNVNEVACKGDAEQVPRKKLKTSIYSSHSSLKHGSCREGSVSNGIDSKSLDAALSEKEMSNFKKNCAHCHCQNTSQLTSPNGPKSLCDGCISSYGKDKDLHSDSNIGADKENGEVDDDLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTVVSRCRSFGN
Disordered region (IsUnstruct)
****************LGPIGPDYFGFYTCEIMELL********************************************IGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQLQSQVR**********************************************************************CAHCHC******************C*************************************************ELFATLGHMEQKLEELLNTVV********
Disordered Region (DISOPRED)
************DHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPST***************************VSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQL*************************************************************************KNCA**************************************************DLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTVVSRCRS***
Disordered Region (DISEMBL)
MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQD************************DTIDTSGRGTVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQLQSQVRNRKCSPNVNEVACKGDAEQVPRKKLKTSI******************NGIDSKSLDAALSEKEMSNFKKNCAHCHCQNTSQLTSPNGPKSLCDGCISSYGKDKDLHSDSNIGADKENGEVDDDLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTVVSRCRSFGN
Disordered Region (DISPRO)
*****KSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSEL**********K*********TVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQLQSQVRN****************************************************S*DAALSEKEMSNFKKNCAHCHCQNTSQ**S****KSLCDGCISSY*******************EVDDDLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTVVSRCR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGVRGKDTIDTSGRGTVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQLQSQVRNRKCSPNVNEVACKGDAEQVPRKKLKTSIYSSHSSLKHGSCREGSVSNGIDSKSLDAALSEKEMSNFKKNCAHCHCQNTSQLTSPNGPKSLCDGCISSYGKDKDLHSDSNIGADKENGEVDDDLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTVVSRCRSFGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
147866326	367	hypothetical protein VITISV_014175 [Viti	0.959	0.782	0.498	7e-61
296087573	367	unnamed protein product [Vitis vinifera]	0.959	0.782	0.495	2e-60
359488794	325	PREDICTED: uncharacterized protein LOC10	0.826	0.76	0.419	4e-46
255572054	293	hypothetical protein RCOM_0532400 [Ricin	0.397	0.406	0.557	2e-26
356560553	299	PREDICTED: uncharacterized protein LOC10	0.491	0.491	0.444	5e-26
356573986	299	PREDICTED: uncharacterized protein LOC10	0.498	0.498	0.432	6e-25
357504047	313	Transcription factor GTE6 [Medicago trun	0.558	0.533	0.419	1e-24
449455974	325	PREDICTED: uncharacterized protein LOC10	0.712	0.655	0.285	2e-12
224074436	170	predicted protein [Populus trichocarpa]	0.247	0.435	0.506	1e-11
449533152	164	PREDICTED: uncharacterized protein LOC10	0.371	0.676	0.350	4e-11

>gi|147866326|emb|CAN82033.1| hypothetical protein VITISV_014175 [Vitis vinifera]

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 153/307 (49%), Positives = 191/307 (62%), Gaps = 20/307 (6%)

Query: 1   MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGV 60
           MSE SK ++AS +H +   +GP+YFGFY  E+ ELLSQD+D LP +S+ SEL+ +    V
Sbjct: 1   MSEGSKCVVASAEHNK---VGPNYFGFYVXEVAELLSQDKDFLPCSSQASELSARTGGQV 57

Query: 61  RGKDTIDTSGRG--------TVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEML 112
           R  D I     G        + S FSN IGAG +DFK ERL++LLRQ V  L  EVDEML
Sbjct: 58  RDGDKIKHGCDGKEAKSSSSSGSLFSNGIGAGISDFKNERLKALLRQSVTSLTQEVDEML 117

Query: 113 DPVIAMCQLQSQVRNRKCSPNVNEVACKGDAEQVPRKKLK-TSIYSSHSSLKHGSCREGS 171
           DPV+A+ Q+Q+ +R +K     +     G A Q P KK K +S  +SH S   GS REGS
Sbjct: 118 DPVLAIRQIQAHLRYKKHQSRNSNGESDGCAGQFPCKKRKMSSPNASHISC--GSSREGS 175

Query: 172 VSNGIDSKSLDAALSEKEMSNFKKNCAHCHCQNTSQL-TSPNGPKSLCDGCISSYGKDKD 230
               +D  S     SEK  SN  K+CAHCH   T +  T P G KSLCD C     K ++
Sbjct: 176 AFECVDGAS-----SEKXKSNIVKSCAHCHTTETLRWRTGPEGHKSLCDACGIRLEKQRE 230

Query: 231 LHSDSNIGADKENGEVDDDLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTV 290
               SN GA+KENGEV+DDL+ LLE+D S VEE VKKYSDEL  TLG MEQ+LEELL+TV
Sbjct: 231 PLFCSNTGAEKENGEVNDDLKILLENDCSLVEERVKKYSDELSGTLGLMEQQLEELLDTV 290

Query: 291 VSRCRSF 297
           + +CR  
Sbjct: 291 MCQCRPM 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087573|emb|CBI34829.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/307 (49%), Positives = 191/307 (62%), Gaps = 20/307 (6%)

Query: 1   MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGV 60
           MSE SK ++AS +H +   +GP+YFGFY  E+ ELLSQD+D LP +S+ SEL+ +    V
Sbjct: 1   MSEGSKCVVASAEHNK---VGPNYFGFYVREVAELLSQDKDFLPCSSQASELSARTGGQV 57

Query: 61  RGKDTIDTSGRG--------TVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEML 112
           R  D I     G        + S FSN IGAG +DFK ERL++LLRQ V  L  EVDEML
Sbjct: 58  RDGDKIKHGCDGKEAKSSSSSGSLFSNGIGAGISDFKNERLKALLRQSVTSLTQEVDEML 117

Query: 113 DPVIAMCQLQSQVRNRKCSPNVNEVACKGDAEQVPRKKLK-TSIYSSHSSLKHGSCREGS 171
           DPV+A+ Q+Q+ +R +K     +     G A Q P KK K +S  +SH S   GS REGS
Sbjct: 118 DPVLAIRQIQAHLRYKKHQSRNSNGESDGCAGQFPCKKRKMSSPNASHISC--GSSREGS 175

Query: 172 VSNGIDSKSLDAALSEKEMSNFKKNCAHCHCQNTSQL-TSPNGPKSLCDGCISSYGKDKD 230
               +D  S     SEK  SN  K+CAHCH   T +  T P G KSLCD C     K ++
Sbjct: 176 AFECVDGAS-----SEKRKSNIVKSCAHCHTTETLRWRTGPEGHKSLCDACGIRLEKQRE 230

Query: 231 LHSDSNIGADKENGEVDDDLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTV 290
               SN GA+KENGEV+DDL+ LLE+D S VEE VKKYSDEL  TLG MEQ+LE+LL+TV
Sbjct: 231 PLFCSNTGAEKENGEVNDDLKILLENDCSLVEERVKKYSDELSGTLGLMEQQLEQLLDTV 290

Query: 291 VSRCRSF 297
           + +CR  
Sbjct: 291 MCQCRPM 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488794|ref|XP_002271988.2| PREDICTED: uncharacterized protein LOC100255968 [Vitis vinifera]

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 166/305 (54%), Gaps = 58/305 (19%)

Query: 1   MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGV 60
           MSE SK ++AS +H +   +GP+YFGFY  E+ ELLSQD+D LP +S+ SEL+ +    V
Sbjct: 1   MSEGSKCVVASAEHNK---VGPNYFGFYVREVAELLSQDKDFLPCSSQASELSARTGGQV 57

Query: 61  RGKDTIDTSGRG--------TVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEML 112
           R  D I     G        + S FSN IGAG +DFK ERL++LLRQ V  L  EVDEML
Sbjct: 58  RDGDKIKHGCDGKEAKSSSSSGSLFSNGIGAGISDFKNERLKALLRQSVTSLTQEVDEML 117

Query: 113 DPVIAMCQLQSQVRNRKCSPNVNEVACKGDAEQVPRKKLKTSIYSSHSSLKHGSCREGSV 172
           DPV+A+ Q+Q+ +R +K     +     G A Q P KK K S                  
Sbjct: 118 DPVLAIRQIQAHLRYKKHQSRNSNGESDGCAGQFPCKKRKMS------------------ 159

Query: 173 SNGIDSKSLDAALSEKEMSNFKKNCAHCHCQNTSQLTSPNGPKSLCDGCISSYGKDKDLH 232
                                  N +H  C ++ +        SLCD C     K ++  
Sbjct: 160 ---------------------SPNASHISCGSSRE--------SLCDACGIRLEKQREPL 190

Query: 233 SDSNIGADKENGEVDDDLQFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNTVVS 292
             SN GA+KENGEV+DDL+ LLE+D S VEE VKKYSDEL  TLG MEQ+LE+LL+TV+ 
Sbjct: 191 FCSNTGAEKENGEVNDDLKILLENDCSLVEERVKKYSDELSGTLGLMEQQLEQLLDTVMC 250

Query: 293 RCRSF 297
           +CR  
Sbjct: 251 QCRPM 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572054|ref|XP_002526968.1| hypothetical protein RCOM_0532400 [Ricinus communis] gi|223533720|gb|EEF35455.1| hypothetical protein RCOM_0532400 [Ricinus communis]

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 86/131 (65%), Gaps = 12/131 (9%)

Query: 1   MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSG- 59
           MSE S S +AS D   L   GPDYF FYT E+  LLSQDED LP     +EL+  KC   
Sbjct: 11  MSETSVSWVASAD---LNKAGPDYFSFYTGEVKSLLSQDEDFLP---FAAELSGNKCGEG 64

Query: 60  -VRGKDTIDTSGRGTVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAM 118
            VRG   ++ S      SF +S+GAG +D KKERL+SLL Q +  L PE DEMLDPV+AM
Sbjct: 65  EVRGNVIVEPSS----GSFLSSVGAGLSDHKKERLKSLLLQALAVLTPEADEMLDPVLAM 120

Query: 119 CQLQSQVRNRK 129
           CQLQSQVR+RK
Sbjct: 121 CQLQSQVRSRK 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560553|ref|XP_003548555.1| PREDICTED: uncharacterized protein LOC100790673 [Glycine max]

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 101/153 (66%), Gaps = 6/153 (3%)

Query: 1   MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGV 60
           MS ASKS +AS  + +   +GPDYFG+Y+ E++ LLSQDED  P +++T EL   K    
Sbjct: 1   MSNASKSFVASDKYER---VGPDYFGYYSSEVVNLLSQDEDVFPVSTQTPELPESKYEEG 57

Query: 61  RGKDTIDTSGRGTVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQ 120
           R K+ ++ S   +   +SN++GA  +DFKK+RL+SLLRQ V  L+ EVD+++DPV A   
Sbjct: 58  RKKNLVNQSDNCSGPLYSNAVGACLSDFKKDRLKSLLRQSVIALSSEVDQVVDPVFAAYH 117

Query: 121 LQSQVRNRKCSPNVNEVACKGD-AEQVPRKKLK 152
           LQ+ ++++  S ++N+ A   D   QVP KKLK
Sbjct: 118 LQANLKSK--SQSLNDTATASDNVVQVPCKKLK 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573986|ref|XP_003555135.1| PREDICTED: uncharacterized protein LOC100791819 [Glycine max]

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 100/155 (64%), Gaps = 6/155 (3%)

Query: 1   MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGV 60
           MS  SKS  AS  + +   +GPDYFG+Y+ E++ LLSQDED  P +++T EL   K    
Sbjct: 1   MSNVSKSSFASDKYER---VGPDYFGYYSSEVVNLLSQDEDVFPVSTQTPELPETKYEEG 57

Query: 61  RGKDTIDTSGRGTVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQ 120
             K+ ++ +   +   +SN++GAG ++FKK+R +SLLRQ V  L+ EVDE++DPV A   
Sbjct: 58  GKKNLVNQTDNCSGPLYSNAVGAGLSEFKKDRFKSLLRQSVIALSSEVDEVVDPVFAAYH 117

Query: 121 LQSQVRNRKCSPNVNEVACKGD-AEQVPRKKLKTS 154
           LQS+++++  S ++N+ A   D   QVP KKLK S
Sbjct: 118 LQSKLKSK--SQSLNDTATASDNVMQVPCKKLKIS 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504047|ref|XP_003622312.1| Transcription factor GTE6 [Medicago truncatula] gi|355497327|gb|AES78530.1| Transcription factor GTE6 [Medicago truncatula]

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 107/174 (61%), Gaps = 7/174 (4%)

Query: 1   MSEASKSLLASTDHGQLGPIGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGV 60
           MS+AS  L+    + +   +GPD+FG+Y+ E++ LLSQDED LP +++ SEL   KC G 
Sbjct: 14  MSKASGRLVPLDKYER---VGPDFFGYYSSEVVNLLSQDEDVLPVSTQLSELPHNKC-GE 69

Query: 61  RGKDTIDTSGRGTVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQ 120
            GK+ ++ S   T   +S+ +GAG +DF+K+RL+SLLRQ  F L+ EV E+ DPV AM  
Sbjct: 70  GGKNLVNHSYNFTGPLYSDGVGAGLSDFEKDRLKSLLRQSAFTLSSEVAEVADPVFAMFN 129

Query: 121 LQSQVRNRKCSPNVNEVACKGDAEQVPRKKLKTSIYSSHSSLKHGSCREGSVSN 174
           LQS +R++  S ++  +    D  Q+P KK K S  S   S + G   E S +N
Sbjct: 130 LQSGIRSKTHSLSLTTMT-SDDVLQIPCKKQKVS--SQSPSARSGLLAETSDAN 180

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455974|ref|XP_004145725.1| PREDICTED: uncharacterized protein LOC101211269 [Cucumis sativus]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 116/270 (42%), Gaps = 57/270 (21%)

Query: 20  IGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGVRGKDTIDTSGRGTVSSFSN 79
           + PD F ++  E+++LLSQ ED +PS    S+++                  G    FS+
Sbjct: 70  LEPDTFCYFKREVIDLLSQ-EDNVPSPPHNSQIS------------------GASPPFSD 110

Query: 80  SIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQLQSQVRNRKCSPNVNEVAC 139
            IG   + FKKE+L++LLRQ V  L+ EV+EML+P  +  +L+S +R++K   N+ +VA 
Sbjct: 111 CIGPKLSHFKKEKLKTLLRQSVVTLSKEVNEMLEPARSTQRLKSYLRSKK---NLEKVAM 167

Query: 140 KGDAEQVPRKKLKTSIYSSHSSLKHGSCREGSVSNGID---------------------S 178
             + +Q P KKLK S+ SS     H  C     S  ID                     S
Sbjct: 168 -NNVKQAPFKKLK-SLSSSTGLSAHEDCANLGSSMMIDDELQFFLDNYSEQIEDVVAKFS 225

Query: 179 KSLDAALSEKE----------MSNFKKNC--AHCHCQNTSQLTSPNGPKSLCDGCISSYG 226
             L   L   E          +SNF+          Q   Q   P   + + +  I    
Sbjct: 226 NDLSGTLGHMEQQLEEVLDSVLSNFRPMTFKEKEELQKLIQKLPPENIRRVAEIVIQHRT 285

Query: 227 KDKDLHSDSNIGADKENGEVDDDLQFLLES 256
              DL  + +IG DKEN      L + +E+
Sbjct: 286 DKTDLSGEIHIGLDKENNTTLWRLYYYVEA 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074436|ref|XP_002304370.1| predicted protein [Populus trichocarpa] gi|222841802|gb|EEE79349.1| predicted protein [Populus trichocarpa]

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 54/79 (68%), Gaps = 5/79 (6%)

Query: 222 ISSYGKDKDLHSDSNIGADKENGEV-DDDLQFLLESDSSEVEETVKKYSDELFATLGHME 280
           +SSY       +++ + A   N    DDD++FLLE++SS VE+T+KKYSDEL +TL HME
Sbjct: 29  VSSYSSS----TNTPLAASPSNSSTEDDDMKFLLENNSSHVEKTLKKYSDELLSTLEHME 84

Query: 281 QKLEELLNTVVSRCRSFGN 299
           QKLEELL+ V S CR   +
Sbjct: 85  QKLEELLDAVASNCRPMTH 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533152|ref|XP_004173541.1| PREDICTED: uncharacterized protein LOC101227401, partial [Cucumis sativus]

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 23/134 (17%)

Query: 20  IGPDYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGVRGKDTIDTSGRGTVSSFSN 79
           + PD F ++  E+++LLSQ ED +PS    S+++                  G    FS+
Sbjct: 14  LEPDTFCYFKREVIDLLSQ-EDNVPSPPHNSQIS------------------GASPPFSD 54

Query: 80  SIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQLQSQVRNRKCSPNVNEVAC 139
            IG   + FKKE+L++LLRQ V  L+ EV+E+L+P  +   L+S +R++K   N+ +VA 
Sbjct: 55  CIGPKLSHFKKEKLKTLLRQSVVTLSKEVNEVLEPARSTQHLKSYLRSKK---NLEKVAM 111

Query: 140 KGDAEQVPRKKLKT 153
             + +Q P KKLK+
Sbjct: 112 -NNVKQAPFKKLKS 124

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2086671	244	AT3G27420 "AT3G27420" [Arabido	0.247	0.303	0.391	1.1e-12

TAIR|locus:2086671 AT3G27420 "AT3G27420" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query:   222 ISSYGKDKDLHSDSNIGADKENGEVDDDLQFLLESDSSEVEETVKKYSDELFATLGHMEQ 281
             IS  G      S S+   ++  G  +DD+Q LL SDS  V+    +YS+ L + L +M+Q
Sbjct:    96 ISQLGNKCQSSSPSDFVPEETGGAREDDIQLLLRSDSDMVKNITSQYSNVLLSKLDNMQQ 155

Query:   282 KLEELLNTVVSRCR 295
             +LE LL+ VV+ CR
Sbjct:   156 ELERLLDDVVATCR 169

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020624001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (203 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.2
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.19
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.11
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.64
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	93.48

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.20  E-value=4.6e-12  Score=90.79  Aligned_cols=39  Identities=31%  Similarity=0.656  Sum_probs=36.1

Q ss_pred             cccccCccccccccC-cCCCCCCccccccccccccCCccc
Q 022315          193 FKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKDL  231 (299)
Q Consensus       193 ~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~~  231 (299)
                      ..+.|++|++++||+ |.||.|++.||||||++|++....
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~   41 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC
Confidence            467999999999999 999999999999999999998764

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.19  E-value=9.4e-13  Score=88.30  Aligned_cols=34  Identities=35%  Similarity=0.754  Sum_probs=27.4

Q ss_pred             cCccccccccC-cCCCCCCccccccccccccCCcc
Q 022315          197 CAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKD  230 (299)
Q Consensus       197 C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~  230 (299)
                      |++|+|++||+ |.||.|+.+||||||++|+|.+.
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999 99999999999999999998763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.11  E-value=1.4e-11  Score=89.31  Aligned_cols=35  Identities=26%  Similarity=0.589  Sum_probs=33.1

Q ss_pred             ccCccccccccC-cCCCCCCccccccccccccCCcc
Q 022315          196 NCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKD  230 (299)
Q Consensus       196 ~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~  230 (299)
                      .|++|++++||+ |.||.|+..||||||++|++...
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~   36 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGV   36 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCC
Confidence            599999999999 99999999999999999999873

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.64  E-value=1.6e-08  Score=81.03  Aligned_cols=35  Identities=37%  Similarity=0.817  Sum_probs=34.0

Q ss_pred             ccccCccccccccC-cCCCCCCccccccccccccCC
Q 022315          194 KKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKD  228 (299)
Q Consensus       194 ~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~  228 (299)
                      .+.|.+|.+++||+ |.||.||+++|||||++|++.
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~  234 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKG  234 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhc
Confidence            58999999999999 999999999999999999998

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=93.48  E-value=0.037  Score=55.78  Aligned_cols=38  Identities=18%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             ccccccCccccccccC-cCCCCC----CccccccccccccCCc
Q 022315          192 NFKKNCAHCHCQNTSQ-LTSPNG----PKSLCDGCISSYGKDK  229 (299)
Q Consensus       192 ~~~r~C~~C~ttkTp~-R~GP~G----PKSLCNACGiRyrk~r  229 (299)
                      +....|..|.|+.||+ |-+..+    +-.||||||+-|.--.
T Consensus       156 ~~~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg  198 (498)
T COG5641         156 NQPHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHG  198 (498)
T ss_pred             cccchhccccccCCccccccccccccCCccccccccccccccC
Confidence            3445999999999999 888887    8899999999887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 5e-09
 Identities = 50/326 (15%), Positives = 100/326 (30%), Gaps = 95/326 (29%)

Query: 23  DYFGFYTCEIMELLSQDEDPLPSTSRTSELTRKKCSGVRGKDTIDTSGRGTVSSFSNSIG 82
           + F   +C+I  LL         T+R  ++T          D +  +    +S   +   
Sbjct: 260 NAFNL-SCKI--LL---------TTRFKQVT----------DFLSAATTTHISL--DHHS 295

Query: 83  AGFTDFK-KERLRSLLRQGVFDLAPEVDEMLDP-VIAMCQLQSQVRNRKCSPNVNEVACK 140
              T  + K  L   L     DL  EV    +P  +++  +   +R+   + +       
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLSI--IAESIRDGLATWD------- 345

Query: 141 GDAEQVPRKKLKTSIYSSHSSLKHGSCREGSVSNGI---DSK-----------SLDAALS 186
            + + V   KL T I SS + L+    R+      +    +             +  +  
Sbjct: 346 -NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 187 EKEMSNF-KKNCAHCH-CQNTSQL--------TSPNGPKSLCDGCISSYGKDKDLHSD-- 234
              ++   K +       ++T  +               +L    +  Y   K   SD  
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 235 ----------SNIG---ADKENGEVDD-------DLQFL---LESDSSEVEET------- 264
                     S+IG    + E+ E          D +FL   +  DS+    +       
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 265 --VKKYSDELFATLGHMEQKLEELLN 288
             +K Y   +       E+ +  +L+
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILD 550

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 47/287 (16%), Positives = 74/287 (25%), Gaps = 91/287 (31%)

Query: 64  DTIDTSGRGTVSSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEMLDPVIAMCQLQS 123
            T+ +     V  F   +      F    ++               E   P +       
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIK--------------TEQRQPSMMTRMYIE 114

Query: 124 QVRNRKCSPNVNEVACKGDAEQVPRKKLKTSIYSSHSSLK-------HGSCREGSVSNGI 176
           Q R+R    N N+V  K     V R +    +  +   L+        G    GS   G 
Sbjct: 115 Q-RDRLY--NDNQVFAKY---NVSRLQPYLKLRQALLELRPAKNVLIDG--VLGS---G- 162

Query: 177 DSKS---LDAALSEKEMSNFKK-----NCAHCHC--------QNTSQLTSPNGPKSLCDG 220
             K+   LD  LS K            N  +C+         Q       PN   S  D 
Sbjct: 163 --KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDH 219

Query: 221 -------CISSYGKDKDL-----HSDS-----NIGADKE----------------NGEVD 247
                    S   + + L     + +      N+  + +                  +V 
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 248 DDLQFLLESDSSEVEETV---KKYSDELFAT-LGHMEQKL-EELLNT 289
           D L     +  S    ++         L    L    Q L  E+L T
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.31
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.26
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.25
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.14
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	98.96
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	98.69
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	98.42
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	90.73

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.31  E-value=1.5e-13  Score=95.67  Aligned_cols=36  Identities=25%  Similarity=0.519  Sum_probs=32.8

Q ss_pred             ccccCccccccccC-cCCCCCCccccccccccccCCcc
Q 022315          194 KKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKD  230 (299)
Q Consensus       194 ~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~  230 (299)
                      ++.|++|+|++||+ |.||.|| +||||||++|++.+.
T Consensus         1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~   37 (43)
T 2vut_I            1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV   37 (43)
T ss_dssp             -CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred             CCcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence            36899999999999 9999999 999999999998763

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.26  E-value=7.6e-13  Score=93.30  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=33.8

Q ss_pred             cccccCccccccccC-cCCCCCCccccccccccccCCcc
Q 022315          193 FKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKD  230 (299)
Q Consensus       193 ~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~  230 (299)
                      ..+.|++|+|++||+ |.||.|| +||||||++|++...
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~   40 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ   40 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence            467899999999999 9999999 999999999998663

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.25  E-value=1.1e-12  Score=97.66  Aligned_cols=37  Identities=24%  Similarity=0.521  Sum_probs=34.2

Q ss_pred             cccccCccccccccC-cCCCCCCccccccccccccCCcc
Q 022315          193 FKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKD  230 (299)
Q Consensus       193 ~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~  230 (299)
                      ..+.|++|+|++||+ |.||.|| +||||||++|++.+.
T Consensus         6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~   43 (63)
T 3dfx_A            6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI   43 (63)
T ss_dssp             TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS
T ss_pred             CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC
Confidence            467899999999999 9999999 999999999998773

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.14  E-value=2.4e-12  Score=96.41  Aligned_cols=39  Identities=26%  Similarity=0.469  Sum_probs=35.3

Q ss_pred             hccccccCccccccccC-cCCCCCCccccccccccccCCcc
Q 022315          191 SNFKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKD  230 (299)
Q Consensus       191 ~~~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~  230 (299)
                      ++..+.|++|+|++||+ |.||.|+ +||||||++|++...
T Consensus         6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~   45 (66)
T 4gat_A            6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV   45 (66)
T ss_dssp             SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence            35678999999999999 9999999 999999999988663

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=98.96  E-value=9.2e-11  Score=89.08  Aligned_cols=38  Identities=16%  Similarity=0.309  Sum_probs=30.4

Q ss_pred             ccccccCccccccccC-cCCCCCCccccccccccccCCc
Q 022315          192 NFKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDK  229 (299)
Q Consensus       192 ~~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r  229 (299)
                      ...+.|+||+|++||+ |.||.++-+||||||++|++..
T Consensus         6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~   44 (71)
T 2kae_A            6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN   44 (71)
T ss_dssp             --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH
T ss_pred             CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC
Confidence            4578999999999999 8844333399999999999865

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=98.69  E-value=2.3e-09  Score=86.51  Aligned_cols=35  Identities=26%  Similarity=0.619  Sum_probs=32.5

Q ss_pred             ccccCccccccccC-cCCCCCCccccccccccccCCc
Q 022315          194 KKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDK  229 (299)
Q Consensus       194 ~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r  229 (299)
                      ...|++|+|+.||+ |.||.| ++||||||++|++..
T Consensus        59 ~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~   94 (115)
T 4hc9_A           59 GTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHN   94 (115)
T ss_dssp             TCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred             cccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhC
Confidence            37899999999999 999999 999999999998765

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=98.42  E-value=2.9e-08  Score=80.16  Aligned_cols=36  Identities=19%  Similarity=0.481  Sum_probs=30.3

Q ss_pred             ccccccCccccccccC-cCCCCCCccccccccccccCC
Q 022315          192 NFKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKD  228 (299)
Q Consensus       192 ~~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~  228 (299)
                      +..+.|++|+|+.||+ |-||.| ..||||||++|+..
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~   39 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMN   39 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHH
T ss_pred             CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhc
Confidence            4678999999999999 999999 79999999988643

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=90.73  E-value=0.093  Score=38.77  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.5

Q ss_pred             cCCCCCCccccccccccccCCc
Q 022315          208 LTSPNGPKSLCDGCISSYGKDK  229 (299)
Q Consensus       208 R~GP~GPKSLCNACGiRyrk~r  229 (299)
                      -+||.||++-|.-||+.|--+-
T Consensus         6 ~~~~~~P~~eC~lC~vkYs~r~   27 (55)
T 2yrk_A            6 SGGTDGTKPECTLCGVKYSARL   27 (55)
T ss_dssp             CCCCCCCCSCCTTTTCCCCSSS
T ss_pred             CCCCCCCCccccccCccccccc
Confidence            5799999999999999997653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.31
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.24
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.06
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	91.82

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1.1e-13  Score=94.08  Aligned_cols=34  Identities=21%  Similarity=0.484  Sum_probs=31.5

Q ss_pred             ccccCccccccccC-cCCCCCCccccccccccccCC
Q 022315          194 KKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKD  228 (299)
Q Consensus       194 ~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~  228 (299)
                      .|.|++|+|++||+ |.||.| ++||||||++||..
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~   36 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMN   36 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHS
T ss_pred             cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHh
Confidence            57899999999999 999999 79999999999864

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.24  E-value=2.5e-13  Score=93.66  Aligned_cols=33  Identities=27%  Similarity=0.618  Sum_probs=30.4

Q ss_pred             ccCccccccccC-cCCCCCCccccccccccccCCc
Q 022315          196 NCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDK  229 (299)
Q Consensus       196 ~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r  229 (299)
                      .|+||+|++||+ |.||.| ++||||||++|++..
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g   35 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHG   35 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHS
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcC
Confidence            699999999999 999999 899999999997644

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.06  E-value=1.1e-11  Score=91.50  Aligned_cols=34  Identities=26%  Similarity=0.640  Sum_probs=31.4

Q ss_pred             cccCccccccccC-cCCCCCCccccccccccccCCc
Q 022315          195 KNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDK  229 (299)
Q Consensus       195 r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r  229 (299)
                      ..|+||+|++||+ |-||.| ++||||||++|++..
T Consensus         5 ~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~   39 (66)
T d3gata_           5 TVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQ   39 (66)
T ss_dssp             CCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhC
Confidence            4699999999999 999999 899999999998755

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.033  Score=38.52  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=18.0

Q ss_pred             CCCCCccccccccccccCCc
Q 022315          210 SPNGPKSLCDGCISSYGKDK  229 (299)
Q Consensus       210 GP~GPKSLCNACGiRyrk~r  229 (299)
                      ||.||++-|+-|+++|-.+-
T Consensus         1 g~~gp~~eC~lC~vKYs~~~   20 (48)
T d2yrka1           1 GTDGTKPECTLCGVKYSARL   20 (48)
T ss_dssp             CCCCCCSCCTTTTCCCCSSS
T ss_pred             CCCCCcccCcccceeeeeec
Confidence            89999999999999997653