Citrus Sinensis ID: 022331

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISIMANNNGESGSGGGGGGGDEEDDREHSDEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGGGGGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEEEccccHHHHHHHHHHHcccEEEEEccccEEEEEEEcccccccccEEEEEEEEEEEEEEcccccccccccccEEEEEEcccccEEcccccccEEEEccEEEEEEEcccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEcccccccccccccccEEEEEEcccccEEEccEHHHHHccccEEEEEEEccccHHHcccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccc
Coil and Loop (DISEMBL)
manrwwtgqvglpgmdgstatssspmkkpdlgisimannngesgsgggggggdeeddrehsdepregaieistrrprgrppgsknkpkppifvtrdspnalKSHVMEIANGADVAETLANFARRRQRGVcvlsgsgtvtnvtlrqpsdpsavMAIHGRFEILSltgaflpgpappgstglTIYLaggqgqvvGGSVVGSLVASGPVMVIAATFsnatyerlpldeeeeggagaqgplgggggggsgssggggggaggggggigdpsgmgvynnlppnlvanggqlsheaygwahgrpaf
Flexible Loop (DISEMBL)
manrwwtgqvglpgmdgstatssspMKKPDLGISIMANNNGESGSGGGGGGGDEEDDREhsdepregaieistrrprgrppgsknkpkppifvtRDSPNALKSHVMEIANGADVAETLANFARRRQRGvcvlsgsgtvtnvtlrqpsdpSAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGGGGGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGwahgrpaf
Low Complexity Region (SEG)
MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISIMAnnngesgsgggggggdeeddREHSDEPREGAIEISTrrprgrppgsknkpkppIFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYlaggqgqvvggsvvgslvasgPVMVIAATFSNATYERLPLDEEEEggagaqgplgggggggsgssggggggaggggggigdpsgmgVYNNLPPNLVANGGQLSHEAYGWAHGRPAF
Disordered region (IsUnstruct)
*****W**************************************************************************************************VMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLR*****SAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATY*********************************************************************************
Disordered Region (DISOPRED)
*ANRWWT***************************************************************************************RDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFS******************************************************************************AHG****
Disordered Region (DISEMBL)
MANRWWTGQVGLPGMDG********MKKPDLGISIMANNNGES**********************EGAIEISTR***********KPKPPIFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLG******************GGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF
Disordered Region (DISPRO)
*************************************************************************************KPKPPIFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLD**************************************GDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISIMANNNGESGSGGGGGGGDEEDDREHSDEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGGGGGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.501	0.482	0.654	8e-41

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score =  167 bits (423), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 104/159 (65%), Positives = 127/159 (79%), Gaps = 9/159 (5%)

Query: 74  RRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLS 133
           +RPRGRPPGSKNK KPPI VTRDSPNAL+SHV+E++ GAD+ E+++ +ARRR RGV VL 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLG 145

Query: 134 GSGTVTNVTLRQPSDPSAVM---------AIHGRFEILSLTGAFLPGPAPPGSTGLTIYL 184
           G+GTV+NVTLRQP  P              +HGRFEILSLTG  LP PAPPG+ GL+I+L
Sbjct: 146 GNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFL 205

Query: 185 AGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPL 223
           AGGQGQVVGGSVV  L+AS PV+++AA+FSNA +ERLP+
Sbjct: 206 AGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPI 244


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,968,921
Number of Sequences: 539616
Number of extensions: 8228499
Number of successful extensions: 187401
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1997
Number of HSP's successfully gapped in prelim test: 742
Number of HSP's that attempted gapping in prelim test: 64972
Number of HSP's gapped (non-prelim): 51386
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
167600640	289	putative protein [Coffea canephora] gi|3	0.963	0.996	0.763	1e-105
296087883	275	unnamed protein product [Vitis vinifera]	0.916	0.996	0.716	1e-105
225463966	291	PREDICTED: putative DNA-binding protein	0.969	0.996	0.733	1e-105
324388027	289	DNA-binding protein [Coffea arabica]	0.963	0.996	0.76	1e-104
224125680	284	predicted protein [Populus trichocarpa]	0.946	0.996	0.756	1e-103
147812096	259	hypothetical protein VITISV_016751 [Viti	0.789	0.911	0.790	6e-95
356574748	324	PREDICTED: putative DNA-binding protein	0.946	0.873	0.656	3e-94
255576858	301	DNA binding protein, putative [Ricinus c	0.943	0.936	0.645	1e-90
255561901	299	DNA binding protein, putative [Ricinus c	0.976	0.976	0.715	3e-89
356533801	338	PREDICTED: putative DNA-binding protein	0.956	0.846	0.67	4e-86

>gi|167600640|gb|ABZ89182.1| putative protein [Coffea canephora] gi|326367382|gb|ADZ55300.1| DNA-binding protein [Coffea arabica]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/300 (76%), Positives = 260/300 (86%), Gaps = 12/300 (4%)

Query: 1   MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISIMANNNGESGSGGGGGGGDEEDDREH 60
           MANRWWTGQVGLPG++ S++T S  +KKPDLGIS+    N  SGSGGG GG D+ED+RE+
Sbjct: 1   MANRWWTGQVGLPGVETSSSTGSPVLKKPDLGISM----NDNSGSGGGSGGRDDEDEREN 56

Query: 61  S-DEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLA 119
           S DEP+EGA+E++TRRPRGRPPGSKNKPKPPIFVTRDSPNAL+SHVME+ANG+D+AE++A
Sbjct: 57  STDEPKEGAVEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDIAESIA 116

Query: 120 NFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTG 179
            FARRRQRGVCVLS SGTVTNVTLRQPS P AVMA+HGRFEILSLTGAFLPGPAPPG+TG
Sbjct: 117 QFARRRQRGVCVLSASGTVTNVTLRQPSAPGAVMALHGRFEILSLTGAFLPGPAPPGATG 176

Query: 180 LTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGG 239
           LTIYLAGGQGQVVGGSVVGSLVASGPVMVIA+TFSNATYERLP++E+EEGG  AQ     
Sbjct: 177 LTIYLAGGQGQVVGGSVVGSLVASGPVMVIASTFSNATYERLPIEEDEEGGGAAQ----- 231

Query: 240 GGGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF 299
           G  GG+GS   G GGA    GG+GDPS M VY NLPPNL+ NGGQL+HEA+ WAHGRP +
Sbjct: 232 GQLGGNGSPPLGSGGA-PQQGGLGDPSSMPVY-NLPPNLMPNGGQLNHEAFAWAHGRPPY 289

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087883|emb|CBI35166.3| unnamed protein product [Vitis vinifera]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/300 (71%), Positives = 239/300 (79%), Gaps = 26/300 (8%)

Query: 1   MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISIMANNNGESGSGGGGGGGDEEDDREH 60
           MANRWW GQVGL G+D S+A+ +  MKKPDLGIS+  N    SG GG      E      
Sbjct: 1   MANRWWAGQVGLQGVDTSSASPA--MKKPDLGISMNENGGSGSGGGGEEEEEKEN----- 53

Query: 61  SDEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLAN 120
           SDEPREGAIE++TRRPRGRPPGSKNKPKPPIFVTRDSPNAL+SHVME+ANG+D+ E++A 
Sbjct: 54  SDEPREGAIEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQ 113

Query: 121 FARRRQRGVCVLSGSGTVTNVTLRQPSDP-SAVMAIHGRFEILSLTGAFLPGPAPPGSTG 179
           FARRRQRGVCVLS SGTV NVTLRQPS P  AVMA+HGRFEILSLTGAFLPGPAPPGSTG
Sbjct: 114 FARRRQRGVCVLSASGTVMNVTLRQPSAPGGAVMALHGRFEILSLTGAFLPGPAPPGSTG 173

Query: 180 LTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGG 239
           LTIYLAGGQ QVVGGSVVGSL+A+GPVMVIAATFSNATYERLPL++EEE G+ AQ  L  
Sbjct: 174 LTIYLAGGQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPLEDEEEAGSAAQEQL-- 231

Query: 240 GGGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF 299
                          AGGGGGG+ DPS M VY NLPPNL+ NGGQL+H+AYGWAHGR  +
Sbjct: 232 ---------------AGGGGGGMADPSSMPVY-NLPPNLLPNGGQLNHDAYGWAHGRQPY 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463966|ref|XP_002271606.1| PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/300 (73%), Positives = 244/300 (81%), Gaps = 10/300 (3%)

Query: 1   MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISIMANNNGESGSGGGGGGGDEEDDREH 60
           MANRWW GQVGL G+D S+A+ +  MKKPDLGIS+  N    SG GG      E      
Sbjct: 1   MANRWWAGQVGLQGVDTSSASPA--MKKPDLGISMNENGGSGSGGGGEEEEEKEN----- 53

Query: 61  SDEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLAN 120
           SDEPREGAIE++TRRPRGRPPGSKNKPKPPIFVTRDSPNAL+SHVME+ANG+D+ E++A 
Sbjct: 54  SDEPREGAIEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQ 113

Query: 121 FARRRQRGVCVLSGSGTVTNVTLRQPSDP-SAVMAIHGRFEILSLTGAFLPGPAPPGSTG 179
           FARRRQRGVCVLS SGTV NVTLRQPS P  AVMA+HGRFEILSLTGAFLPGPAPPGSTG
Sbjct: 114 FARRRQRGVCVLSASGTVMNVTLRQPSAPGGAVMALHGRFEILSLTGAFLPGPAPPGSTG 173

Query: 180 LTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGG 239
           LTIYLAGGQ QVVGGSVVGSL+A+GPVMVIAATFSNATYERLPL++EEE G+ AQ  L  
Sbjct: 174 LTIYLAGGQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPLEDEEEAGSAAQEQL-A 232

Query: 240 GGGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF 299
           GGGGG GS  G GG  G    G+ DPS M VY NLPPNL+ NGGQL+H+AYGWAHGR  +
Sbjct: 233 GGGGGGGSPPGIGGSGGQQQAGMADPSSMPVY-NLPPNLLPNGGQLNHDAYGWAHGRQPY 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324388027|gb|ADY38789.1| DNA-binding protein [Coffea arabica]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/300 (76%), Positives = 260/300 (86%), Gaps = 12/300 (4%)

Query: 1   MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISIMANNNGESGSGGGGGGGDEEDDREH 60
           MANRWWTGQVGLPG++ S++T S  +KKPDLGIS+    N  SGSGGG GG D+ED+RE+
Sbjct: 1   MANRWWTGQVGLPGVETSSSTGSPVLKKPDLGISM----NDNSGSGGGSGGRDDEDEREN 56

Query: 61  S-DEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLA 119
           S DEP+EGA+E++TRRPRGRPPGSKNKPKPPIFVTRDSPNAL+SHVME+ANG+D+AE++A
Sbjct: 57  STDEPKEGAVEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDIAESIA 116

Query: 120 NFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTG 179
            FARRRQRGVCVLS SGTVTNVTLRQPS P AVMA+HGRFEILSLTGAFLPGPAPPG+TG
Sbjct: 117 QFARRRQRGVCVLSASGTVTNVTLRQPSAPGAVMALHGRFEILSLTGAFLPGPAPPGATG 176

Query: 180 LTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGG 239
           LTIYLAGGQGQVVGGSVVGSLVASGPVMVIA+TFSNATYERLP++E+EEGG  AQ     
Sbjct: 177 LTIYLAGGQGQVVGGSVVGSLVASGPVMVIASTFSNATYERLPIEEDEEGGGAAQ----- 231

Query: 240 GGGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF 299
           G  GG+GS   G GGA    GG+GDPS M VY +LPPNL+ NGGQL+HEA+ WAHGRP +
Sbjct: 232 GQLGGNGSPPLGSGGA-PQQGGLGDPSSMPVY-SLPPNLMPNGGQLNHEAFAWAHGRPPY 289

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125680|ref|XP_002319649.1| predicted protein [Populus trichocarpa] gi|222858025|gb|EEE95572.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/300 (75%), Positives = 251/300 (83%), Gaps = 17/300 (5%)

Query: 1   MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISIMANNNGESGSGGGGGGGDEEDDREH 60
           MANRWWTGQVGLPGMD ST +SSSPMKKPDLGIS M+NNN E+   G G   ++ED+RE+
Sbjct: 1   MANRWWTGQVGLPGMDTST-SSSSPMKKPDLGIS-MSNNNREATESGAGKEDEQEDEREN 58

Query: 61  SDEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLAN 120
           SDEPREGAI+I++RRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIA+G+D+AE LA 
Sbjct: 59  SDEPREGAIDIASRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIASGSDIAENLAC 118

Query: 121 FARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTGL 180
           FAR+RQRGVCVLSGSG VTNVTL+QPS   AVMA+HGRFEILSLTGAFLPGPAPPG+TGL
Sbjct: 119 FARKRQRGVCVLSGSGMVTNVTLKQPSASGAVMALHGRFEILSLTGAFLPGPAPPGATGL 178

Query: 181 TIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGGG 240
           TIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPL++EEEG  GA       
Sbjct: 179 TIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLEDEEEGSGGA------- 231

Query: 241 GGGGSGSSGGGGGGAGGGGGGIGDP-SGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF 299
                G  GGG G   G GGG+GDP + M VY    PN+V N GQL+HE YGWAHGRP +
Sbjct: 232 ----QGQLGGGNGSGEGNGGGMGDPATSMPVYQL--PNMVPN-GQLNHEGYGWAHGRPPY 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812096|emb|CAN61523.1| hypothetical protein VITISV_016751 [Vitis vinifera]

 Score =  353 bits (905), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 189/239 (79%), Positives = 208/239 (87%), Gaps = 3/239 (1%)

Query: 62  DEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLANF 121
           DEPREGAIE++TRRPRGRPPGSKNKPKPPIFVTRDSPNAL+SHVME+ANG+D+ E++A F
Sbjct: 23  DEPREGAIEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQF 82

Query: 122 ARRRQRGVCVLSGSGTVTNVTLRQPSDP-SAVMAIHGRFEILSLTGAFLPGPAPPGSTGL 180
           ARRRQRGVCVLS SGTV NVTLRQPS P  AVMA+HGRFEILSLTGAFLPGPAPPGSTGL
Sbjct: 83  ARRRQRGVCVLSASGTVMNVTLRQPSAPGGAVMALHGRFEILSLTGAFLPGPAPPGSTGL 142

Query: 181 TIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGGG 240
           TIYLAGGQ QVVGGSVVGSL+A+GPVMVIAATFSNATYERLPL++EEE G+ AQ  L  G
Sbjct: 143 TIYLAGGQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPLEDEEEAGSAAQEQL-AG 201

Query: 241 GGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF 299
           GGGG GS  G GG  G    G+ DPS M VY NLPPNL+ NGGQL+H+AYGWAHGR  +
Sbjct: 202 GGGGGGSPPGIGGSGGQQQAGMADPSSMPVY-NLPPNLLPNGGQLNHDAYGWAHGRQPY 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574748|ref|XP_003555507.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 197/300 (65%), Positives = 224/300 (74%), Gaps = 17/300 (5%)

Query: 1   MANRWWTGQVGLPGMDGSTATSSSPMKKP-DLGISIMANNNGESGSGGGGGGGDEEDDRE 59
           +AN WWTGQ GL G+D     S    K+P DLGIS               GG + E+D +
Sbjct: 41  VANPWWTGQGGLSGVDHPGTHSPGLGKRPSDLGIS------------ENSGGHNREEDED 88

Query: 60  HSDEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLA 119
           + DEP+EGA+E+ TRRPRGRPPGSKNKPKPPIFVTRDSPN L+SHVME+  GADVAE++A
Sbjct: 89  NRDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNTLRSHVMEVTGGADVAESVA 148

Query: 120 NFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTG 179
            FARRRQRGVCVLSGSG+V NVTLRQPS P AV+A+HGRFEILSLTG FLPGPAPPGSTG
Sbjct: 149 QFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTG 208

Query: 180 LTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGG 239
           LT+YL GGQGQ+VGGSVVGSLVA+GPVMVIAATF+NATYERLPLDE++EG + A G   G
Sbjct: 209 LTVYLTGGQGQIVGGSVVGSLVAAGPVMVIAATFANATYERLPLDEDDEGPSSAAG-AQG 267

Query: 240 GGGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF 299
           GG       G G  G G   GG+ DPS M +Y NLPPN     GQ+ HEA  WAHGR  F
Sbjct: 268 GGSSPPPPLGIGSSGGGQLQGGMPDPSSMPLY-NLPPN--GGVGQVGHEALAWAHGRAPF 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576858|ref|XP_002529315.1| DNA binding protein, putative [Ricinus communis] gi|223531239|gb|EEF33084.1| DNA binding protein, putative [Ricinus communis]

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 193/299 (64%), Positives = 226/299 (75%), Gaps = 17/299 (5%)

Query: 1   MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISIMANNNGESGSGGGGGGGDEEDDREH 60
           +AN WWTGQ+GL G+D   A++S  + K +  ISI  N+N                    
Sbjct: 19  LANPWWTGQIGLAGLD--PASNSPSLNKANREISINDNSNSRGEDDDDRDT--------- 67

Query: 61  SDEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLAN 120
            DEP+EGA+E+ TRRPRGRPPGSKNKPKPPIFVTRDSPNAL+SHVME+  GADVAE +A 
Sbjct: 68  GDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVVGGADVAECVAQ 127

Query: 121 FARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTGL 180
           FARRRQRGVCVLSGSG+V NVTLRQP+ P AV+A+HGRFEILSLTGAFLPGPAPPGSTGL
Sbjct: 128 FARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGSTGL 187

Query: 181 TIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGGG 240
           T+YLAGGQGQVVGGSVVGSL+A+GPVMVIAATF+NATYERLPL+++EE  +  QG + GG
Sbjct: 188 TVYLAGGQGQVVGGSVVGSLIAAGPVMVIAATFANATYERLPLEDDEEAASAGQGHIQGG 247

Query: 241 GGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF 299
                        G+ G   G+ DPS + VY NLPPNL+ NGGQL H+AY WAHGRP +
Sbjct: 248 SNNSPPPI-----GSTGQQPGLPDPSALPVY-NLPPNLIPNGGQLGHDAYAWAHGRPPY 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561901|ref|XP_002521959.1| DNA binding protein, putative [Ricinus communis] gi|223538763|gb|EEF40363.1| DNA binding protein, putative [Ricinus communis]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 219/306 (71%), Positives = 245/306 (80%), Gaps = 14/306 (4%)

Query: 1   MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISIMANNNGES----GSGGGGGGGDEED 56
           MANRWW GQVGLPGMD ST +S+SPMKKPDLGIS+  +++ E+              +E+
Sbjct: 1   MANRWWAGQVGLPGMDTST-SSTSPMKKPDLGISMSNSSHRETTERDHHHQHHHQEIQEE 59

Query: 57  DREHSDEPREGAIEIST-RRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVA 115
           +REHSDEP+EGAIE++T RRPRGRP GSKNKPKPPIFVTRDSPNALKSHVMEIANG+D+A
Sbjct: 60  EREHSDEPKEGAIEVATHRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVMEIANGSDIA 119

Query: 116 ETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPP 175
           E+LA FAR++QRGVCVLSGSG VTNVTL+QPS P AVMA+HGRFEILSLTGAFLPGPAPP
Sbjct: 120 ESLACFARKKQRGVCVLSGSGMVTNVTLKQPSAPGAVMALHGRFEILSLTGAFLPGPAPP 179

Query: 176 GSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQG 235
           G+TGLTIYLAGGQGQVVGGSVVGSL A+GPVMVIAATFSNATYER  L  EEE   G+ G
Sbjct: 180 GATGLTIYLAGGQGQVVGGSVVGSLTATGPVMVIAATFSNATYER--LPLEEEEEGGSGG 237

Query: 236 PLGGGGGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNL-VANGGQLSHEAYGWAH 294
             G  GGGG  S GGGGG  G G  G   P G     NLPPNL V NGGQL+ +AYGWAH
Sbjct: 238 GQGQLGGGGGSSEGGGGGSGGIGEPGASAPPGY----NLPPNLQVPNGGQLNLDAYGWAH 293

Query: 295 -GRPAF 299
            GRP +
Sbjct: 294 GGRPPY 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533801|ref|XP_003535447.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 201/300 (67%), Positives = 227/300 (75%), Gaps = 14/300 (4%)

Query: 1   MANRWWTGQVGLPGMDGS-TATSSSPMKKPDLGISIMANNNGESGSGGGGGGGDEEDDRE 59
           +AN WWTGQ GL G+D   T +     +  DLGI    N N +S +        EE D +
Sbjct: 52  LANPWWTGQGGLSGVDHPGTHSPGLSKRHSDLGI----NENSDSHNN------REEFDED 101

Query: 60  HSDEPREGAIEISTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLA 119
           + DEP+EGA+E+ TRRPRGRPPGSKNKPKPPIFVTRDSPNAL+SHVMEI  GADVAE++A
Sbjct: 102 NRDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEITGGADVAESVA 161

Query: 120 NFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGSTG 179
            FARRRQRGVCVLSGSG+V NVTLRQPS P AV+A+HGRFEILSLTG FLPGPAPPGSTG
Sbjct: 162 QFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTG 221

Query: 180 LTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEEEEGGAGAQGPLGG 239
           LT+YLAGGQGQVVGGSVVGSLVA+GPVMVIAATF+NATYERLPLDE++EG +   G   G
Sbjct: 222 LTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLDEDDEGPSSMVG-AQG 280

Query: 240 GGGGGSGSSGGGGGGAGGGGGGIGDPSGMGVYNNLPPNLVANGGQLSHEAYGWAHGRPAF 299
           GGG      G G  G G   GGI DPS + +Y NLPPN    GGQ+ HEA  WAHGR  F
Sbjct: 281 GGGSPPLPLGIGSSGGGQLQGGIPDPSSLPLY-NLPPN-GGGGGQVGHEALAWAHGRAPF 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2084958	315	AHL19 "AT-hook motif nuclear-l	0.755	0.717	0.541	1.3e-61
TAIR|locus:505006460	281	AHL20 "AT4G14465" [Arabidopsis	0.712	0.758	0.491	2.3e-58
TAIR|locus:2099956	310	AGF2 "AT-hook protein of GA fe	0.461	0.445	0.561	1.5e-45
TAIR|locus:2132639	324	AT4G22810 "AT4G22810" [Arabido	0.458	0.422	0.564	3.6e-42
TAIR|locus:2118051	339	AT4G12050 "AT4G12050" [Arabido	0.458	0.404	0.572	6.1e-39
TAIR|locus:2063469	285	GIK "GIANT KILLER" [Arabidopsi	0.461	0.484	0.528	1.7e-38
TAIR|locus:2050946	317	AHL22 "AT2G45430" [Arabidopsis	0.461	0.435	0.570	2.6e-38
TAIR|locus:2045585	257	TEK "AT2G42940" [Arabidopsis t	0.458	0.533	0.503	1.2e-37
TAIR|locus:2101916	265	AHL18 "AT3G60870" [Arabidopsis	0.454	0.513	0.579	2.4e-37
TAIR|locus:2129490	292	AT4G17800 [Arabidopsis thalian	0.461	0.472	0.528	6.3e-37

TAIR|locus:2084958 AHL19 "AT-hook motif nuclear-localized protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 131/242 (54%), Positives = 149/242 (61%)

Query:     1 MANRWWTGQVGLPGMDGSTATSSSPMKKPDLGISI-MAXXXXXXXXXXXXXXXXXXXXRE 59
             MAN WWTGQV L G++ +T   SS +KKPDL IS+ MA                     +
Sbjct:     1 MANPWWTGQVNLSGLE-TTPPGSSQLKKPDLHISMNMAMDSGHNNHHHHQEVDNNNNDDD 59

Query:    60 HSD------EPREGAIEISTXXXXXXXXXXXXXXXXXIFVTRDSPNALKSHVMEIANGAD 113
               +      EPREGA+E  T                 IFVTRDSPNALKSHVMEIA+G D
Sbjct:    60 RDNLSGDDHEPREGAVEAPTRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVMEIASGTD 119

Query:   114 VAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSD------P--SAVMAIHGRFEILSLT 165
             V ETLA FARRRQRG+C+LSG+GTV NVTLRQPS       P  +AV+A+ GRFEILSLT
Sbjct:   120 VIETLATFARRRQRGICILSGNGTVANVTLRQPSTAAVAAAPGGAAVLALQGRFEILSLT 179

Query:   166 GAFLPGPAPPGSTGLTIYXXXXXXXXXXXXXXXXXXXXXPVMVIAATFSNATYERLPLDE 225
             G+FLPGPAPPGSTGLTIY                     PVM+IAATFSNATYERLPL+E
Sbjct:   180 GSFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLMAAGPVMLIAATFSNATYERLPLEE 239

Query:   226 EE 227
             EE
Sbjct:   240 EE 241

GO:0005737 "cytoplasm" evidence=ISM

GO:0050832 "defense response to fungus" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:505006460 AHL20 "AT4G14465" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 116/236 (49%), Positives = 146/236 (61%)

Query:     1 MANRWWTGQVGLPGM-DGSTATS-------SSPMKKPDLGISIMAXXXXXXXXXXXXXXX 52
             MAN WWT Q GL GM D S ++         S + K DLGI++                 
Sbjct:     1 MANPWWTNQSGLAGMVDHSVSSGHHQNHHHQSLLTKGDLGIAM---------------NQ 45

Query:    53 XXXXXREHSDEPREGAIEISTXXXXXXXXXXXXXXXXXIFVTRDSPNALKSHVMEIANGA 112
                  ++  D+PREGA+E+                   IFVTRDSPNAL+SHV+EI++G+
Sbjct:    46 SQDNDQDEEDDPREGAVEVVNRRPRGRPPGSKNKPKAPIFVTRDSPNALRSHVLEISDGS 105

Query:   113 DVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGP 172
             DVA+T+A+F+RRRQRGVCVLSG+G+V NVTLRQ + P  V+++ GRFEILSLTGAFLPGP
Sbjct:   106 DVADTIAHFSRRRQRGVCVLSGTGSVANVTLRQAAAPGGVVSLQGRFEILSLTGAFLPGP 165

Query:   173 APPGSTGLTIYXXXXXXXXXXXXXXXXXXXXXPVMVIAATFSNATYERLPLDEEEE 228
             +PPGSTGLT+Y                      VMVIAATFSNATYERLP++EEE+
Sbjct:   166 SPPGSTGLTVYLAGVQGQVVGGSVVGPLLAIGSVMVIAATFSNATYERLPMEEEED 221

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2099956 AGF2 "AT-hook protein of GA feedback 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
 Identities = 78/139 (56%), Positives = 98/139 (70%)

Query:    91 IFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPS 150
             + VT++SPN+L+SHV+EIA GADVAE+L  FARRR RGV VLSGSG VTNVTLRQP+   
Sbjct:   105 VVVTKESPNSLQSHVLEIATGADVAESLNAFARRRGRGVSVLSGSGLVTNVTLRQPAASG 164

Query:   151 AVMAIHGRFEILSLTGAFLP-GPAPPGSTGLTIYXXXXXXXXXXXXXXXXXXXXXPVMVI 209
              V+++ G+FEILS+ GAFLP   +P  + GLTIY                     PV+VI
Sbjct:   165 GVVSLRGQFEILSMCGAFLPTSGSPAAAAGLTIYLAGAQGQVVGGGVAGPLIASGPVIVI 224

Query:   210 AATFSNATYERLPLDEEEE 228
             AATF NATYERLP++EE++
Sbjct:   225 AATFCNATYERLPIEEEQQ 243

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132639 AT4G22810 "AT4G22810" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 79/140 (56%), Positives = 103/140 (73%)

Query:    91 IFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSD-- 148
             I +TRDS NAL++HVMEI +G D+ E++A FARRRQRGVCV+SG+G VTNVT+RQP    
Sbjct:   122 IIITRDSANALRTHVMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSHP 181

Query:   149 -PSAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYXXXXXXXXXXXXXXXXXXXXXPVM 207
              P +V+++HGRFEILSL+G+FLP PAPP +TGL++Y                     PV+
Sbjct:   182 SPGSVVSLHGRFEILSLSGSFLPPPAPPTATGLSVYLAGGQGQVVGGSVVGPLLCAGPVV 241

Query:   208 VIAATFSNATYERLPLDEEE 227
             V+AA+FSNA YERLPL+E+E
Sbjct:   242 VMAASFSNAAYERLPLEEDE 261

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118051 AT4G12050 "AT4G12050" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 79/138 (57%), Positives = 104/138 (75%)

Query:    91 IFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQP-SDP 149
             I +TRDS NAL++HVMEI +G D+ + +A FARRRQRGVCV+SG+G+VTNVT+RQP S P
Sbjct:   135 IIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTIRQPGSPP 194

Query:   150 SAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYXXXXXXXXXXXXXXXXXXXXXPVMVI 209
              +V+++HGRFEILSL+G+FLP PAPP +TGL++Y                     PV+V+
Sbjct:   195 GSVVSLHGRFEILSLSGSFLPPPAPPAATGLSVYLAGGQGQVVGGSVVGPLLCSGPVVVM 254

Query:   210 AATFSNATYERLPLDEEE 227
             AA+FSNA YERLPL+E+E
Sbjct:   255 AASFSNAAYERLPLEEDE 272

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2063469 GIK "GIANT KILLER" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 73/138 (52%), Positives = 98/138 (71%)

Query:    91 IFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPS 150
             + VTR+S N L++H++E+ +G DV E ++ +ARRRQRG+CVLSG+GTVTNV++RQP+   
Sbjct:    95 VIVTRESANTLRAHILEVGSGCDVFECISTYARRRQRGICVLSGTGTVTNVSIRQPTAAG 154

Query:   151 AVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYXXXXXXXXXXXXXXXXXXXXXPVMVIA 210
             AV+ + G FEILSL+G+FLP PAPPG+T LTI+                     PVMV+A
Sbjct:   155 AVVTLRGTFEILSLSGSFLPPPAPPGATSLTIFLAGAQGQVVGGNVVGELMAAGPVMVMA 214

Query:   211 ATFSNATYERLPLDEEEE 228
             A+F+N  YERLPLDE EE
Sbjct:   215 ASFTNVAYERLPLDEHEE 232

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IDA

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0048440 "carpel development" evidence=IMP

GO:0048653 "anther development" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2050946 AHL22 "AT2G45430" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 81/142 (57%), Positives = 104/142 (73%)

Query:    91 IFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSD-P 149
             I +TRDS NALKSHVME+ANG DV E++  FARRRQRG+CVLSG+G VTNVT+RQP+  P
Sbjct:   106 IIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLSGNGAVTNVTIRQPASVP 165

Query:   150 ---SAVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYXXXXXXXXXXXXXXXXXXXXXPV 206
                S+V+ +HGRFEILSL+G+FLP PAPP ++GLTIY                     PV
Sbjct:   166 GGGSSVVNLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLMASGPV 225

Query:   207 MVIAATFSNATYERLPLDEEEE 228
             +++AA+F NA YERLPL+E+++
Sbjct:   226 VIMAASFGNAAYERLPLEEDDQ 247

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2045585 TEK "AT2G42940" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
 Identities = 69/137 (50%), Positives = 98/137 (71%)

Query:    91 IFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPS 150
             I VT DSPN+L+++ +EI++G D+ ETL++FARR+QRG+C+LS +G VTNVTLRQP+   
Sbjct:    70 IIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQRGLCILSANGCVTNVTLRQPASSG 129

Query:   151 AVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYXXXXXXXXXXXXXXXXXXXXXPVMVIA 210
             A++ +HGR+EILSL G+ LP PAP G TGLTIY                     PV+++A
Sbjct:   130 AIVTLHGRYEILSLLGSILPPPAPLGITGLTIYLAGPQGQVVGGGVVGGLIASGPVVLMA 189

Query:   211 ATFSNATYERLPLDEEE 227
             A+F NA ++RLP+D++E
Sbjct:   190 ASFMNAVFDRLPMDDDE 206

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0010529 "negative regulation of transposition" evidence=IMP

GO:0031490 "chromatin DNA binding" evidence=IDA

GO:0035067 "negative regulation of histone acetylation" evidence=IMP

GO:1900111 "positive regulation of histone H3-K9 dimethylation" evidence=IMP

TAIR|locus:2101916 AHL18 "AT3G60870" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 80/138 (57%), Positives = 98/138 (71%)

Query:    91 IFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPS 150
             I VTRDS NA + HVMEI N  DV E+LA FARRRQRGVCVL+G+G VTNVT+RQP    
Sbjct:    76 IIVTRDSANAFRCHVMEITNACDVMESLAVFARRRQRGVCVLTGNGAVTNVTVRQPG--G 133

Query:   151 AVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYXXXXXXXXXXXXXXXXXXXXXPVMVIA 210
              V+++HGRFEILSL+G+FLP PAPP ++GL +Y                     PV+V+A
Sbjct:   134 GVVSLHGRFEILSLSGSFLPPPAPPAASGLKVYLAGGQGQVIGGSVVGPLTASSPVVVMA 193

Query:   211 ATFSNATYERLPLDEEEE 228
             A+F NA+YERLPL+EEEE
Sbjct:   194 ASFGNASYERLPLEEEEE 211

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:2129490 AT4G17800 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 73/138 (52%), Positives = 99/138 (71%)

Query:    91 IFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPS 150
             + +TR+S N L++H++E+ NG DV + +A +ARRRQRG+CVLSGSGTVTNV++RQPS   
Sbjct:    99 VIITRESANTLRAHILEVTNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPSAAG 158

Query:   151 AVMAIHGRFEILSLTGAFLPGPAPPGSTGLTIYXXXXXXXXXXXXXXXXXXXXXPVMVIA 210
             AV+ + G FEILSL+G+FLP PAPPG+T LTI+                     PV+VIA
Sbjct:   159 AVVTLQGTFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIA 218

Query:   211 ATFSNATYERLPLDEEEE 228
             A+F+N  YERLPL+E+E+
Sbjct:   219 ASFTNVAYERLPLEEDEQ 236

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002185001 SubName- Full=Chromosome undetermined scaffold_127, whole genome shotgun sequence; (291 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	3e-38
cd11378	113	cd11378, DUF296, Domain of unknown function found	6e-27
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	1e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	4e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	6e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	9e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.001
COG4907	595	COG4907, COG4907, Predicted membrane protein [Func	0.001
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	0.002
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.003

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  131 bits (331), Expect = 3e-38
 Identities = 55/122 (45%), Positives = 74/122 (60%), Gaps = 6/122 (4%)

Query: 101 LKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPS---AVMAIHG 157
            + HV+ +  G D+ E+L  FAR+R  G  VLSG G V+NVTLRQP + +    V+ + G
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 158 RFEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVV-GSLVASGPVMVIAATFSNA 216
           RFEILSL+G   PG  P  S  L + LA   GQVVGG +  G++ A+G V+V   +F NA
Sbjct: 61  RFEILSLSGTISPGGKP--SGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSFENA 118

Query: 217 TY 218
             
Sbjct: 119 RR 120

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  101 bits (254), Expect = 6e-27
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPS---DPSAVMAIHGR 158
           +  V+ +  G D+ E+L  FAR       VLSG G V+N TLR P         +   GR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 159 FEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATF 213
            EILSL+G   P    P S  L + LA   G+V+GG ++G+LVA G V V+    
Sbjct: 61  LEILSLSGNISPDDGKP-SGHLHVSLADSDGRVIGGHLLGALVA-GTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 24/56 (42%), Positives = 28/56 (50%)

Query: 208 VIAATFSNATYERLPLDEEEEGGAGAQGPLGGGGGGGSGSSGGGGGGAGGGGGGIG 263
             A+  S+AT     L         +   + GGGGGG G  GG GGG GGGGGG G
Sbjct: 47  ASASASSSATSSSASLVANGAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGG 102

Length = 796

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 22/41 (53%), Positives = 22/41 (53%)

Query: 229 GGAGAQGPLGGGGGGGSGSSGGGGGGAGGGGGGIGDPSGMG 269
           GG G  G  GGG GGG G   G G G GGGG G G   G G
Sbjct: 15  GGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPG 55

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 21/41 (51%), Positives = 21/41 (51%)

Query: 229 GGAGAQGPLGGGGGGGSGSSGGGGGGAGGGGGGIGDPSGMG 269
           GG    G  GG GGGG G  GGGG G G GGG      G G
Sbjct: 3   GGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGG 43

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 22/41 (53%), Positives = 22/41 (53%)

Query: 229 GGAGAQGPLGGGGGGGSGSSGGGGGGAGGGGGGIGDPSGMG 269
           GG    G  GG GGGG G   GGG G G GGGG G   G G
Sbjct: 11  GGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGG 51

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 20/42 (47%), Positives = 20/42 (47%)

Query: 229 GGAGAQGPLGGGGGGGSGSSGGGGGGAGGGGGGIGDPSGMGV 270
           GG G     GG GGG  G  G G GG GGG GG G      V
Sbjct: 16  GGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGKV 57

Length = 293

>gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown]

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 183 YLAGGQGQVVGGSVVGSLVASGPVMVIAATFS---NATYERLPLDEEEEGGAGAQGPLGG 239
           YL       V   VV ++  +  + +I  ++S   +  Y R   +      A A      
Sbjct: 515 YLVYATALGVSDKVVKAMRKALDMEIIKDSYSPIFHNNYSRSFNNLNRAYSAIASSRRSS 574

Query: 240 GGGGGSGSSGGGGGGAGGGG 259
             GGG G SGGG GG GGG 
Sbjct: 575 SSGGGGGFSGGGSGGGGGGA 594

Length = 595

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 23/35 (65%), Positives = 24/35 (68%)

Query: 227 EEGGAGAQGPLGGGGGGGSGSSGGGGGGAGGGGGG 261
           +EGG G  G  GGGG GG   SGGGGG A GGGGG
Sbjct: 122 DEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGG 156

Length = 182

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 22/41 (53%), Positives = 23/41 (56%)

Query: 229 GGAGAQGPLGGGGGGGSGSSGGGGGGAGGGGGGIGDPSGMG 269
           G  G +G  GGGG GG G  GG GGG G G GG G   G G
Sbjct: 9   GRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGG 49

Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.93
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	88.35

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=8.6e-29  Score=204.25  Aligned_cols=117  Identities=33%  Similarity=0.533  Sum_probs=98.0

Q ss_pred             ceEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCC--CCCceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331          101 LKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPS--DPSAVMAIHGRFEILSLTGAFLPGPAPPGST  178 (299)
Q Consensus       101 mr~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~--~~g~~vtleG~FEILSLsGtis~~~~~p~~~  178 (299)
                      ||+|++||++||||+++|.+||+++++..|+||++|+|++|+|++++  ..|.+++++|+|||+||+|||+..+++| +.
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~~-~~   79 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDGKP-FV   79 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETTEE-EE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCCCC-cc
Confidence            79999999999999999999999999999999999999999999973  3478899999999999999999866666 89


Q ss_pred             eEEEEEeCCCCcEEceecc-cceeeccceEEEEeeecCcceee
Q 022331          179 GLTIYLAGGQGQVVGGSVV-GSLVASGPVMVIAATFSNATYER  220 (299)
Q Consensus       179 HLHISLAg~dGqViGGHL~-G~LIAAT~V~VI~asF~n~~yeR  220 (299)
                      ||||+|++.||+|+||||. |.++++..+.|+  .+....++|
T Consensus        80 HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~--~~~~~~~~~  120 (120)
T PF03479_consen   80 HLHISLADPDGQVFGGHLLEGTVFATAEVVIT--ELSGINFTR  120 (120)
T ss_dssp             EEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEE--EETTEEEEE
T ss_pred             eEEEEEECCCCeEEeeEeCCCEEeEEEEEEEE--EecCccccC
Confidence            9999999999999999999 555343333333  455555554

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.93  E-value=2.5e-25  Score=191.28  Aligned_cols=123  Identities=19%  Similarity=0.276  Sum_probs=112.5

Q ss_pred             CCCceEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCC---CCceeeeeeeEEEEEeeeeccCCCCC
Q 022331           98 PNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSD---PSAVMAIHGRFEILSLTGAFLPGPAP  174 (299)
Q Consensus        98 ~~~mr~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~---~g~~vtleG~FEILSLsGtis~~~~~  174 (299)
                      .+.-|.+++||++|+|+++.|.+||+++++..++++|+|+|++++|++++.   +|.++++.++||||||.|||+.++  
T Consensus         6 ~~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~--   83 (141)
T COG1661           6 SSSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD--   83 (141)
T ss_pred             cccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC--
Confidence            355689999999999999999999999998889999999999999999874   488999999999999999999987  


Q ss_pred             CCCCeEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeecccc
Q 022331          175 PGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLD  224 (299)
Q Consensus       175 p~~~HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~  224 (299)
                      | +.|||++|++++|.++||||+++.|.. +++|+|-.+....++|.+++
T Consensus        84 p-~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~  131 (141)
T COG1661          84 P-FVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDP  131 (141)
T ss_pred             C-cEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCC
Confidence            5 899999999999999999999888888 45577778888889999887

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=88.35  E-value=0.2  Score=27.68  Aligned_cols=13  Identities=46%  Similarity=0.843  Sum_probs=4.2

Q ss_pred             CCCCCCCCCCCCC
Q 022331           74 RRPRGRPPGSKNK   86 (299)
Q Consensus        74 rrpRGRP~GSknK   86 (299)
                      +|+||||+.+..|
T Consensus         1 ~r~RGRP~k~~~~   13 (13)
T PF02178_consen    1 KRKRGRPRKNAKK   13 (13)
T ss_dssp             S--SS--TT----
T ss_pred             CCcCCCCccccCC
Confidence            5899999987654

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.96
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.96
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.96
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.96
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.96
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.94
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	97.36

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.96  E-value=3.6e-29  Score=213.84  Aligned_cols=126  Identities=20%  Similarity=0.382  Sum_probs=111.2

Q ss_pred             eecCCCCCceEEEEEeCCCccHHHHHHHHHHHcCc-cceEEEeeeeeeeEEecCCCCCCceeeeeeeEEEEEeeeeccCC
Q 022331           93 VTRDSPNALKSHVMEIANGADVAETLANFARRRQR-GVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPG  171 (299)
Q Consensus        93 it~~s~~~mr~hVLrL~~GeDIvesI~~Fa~r~~~-ai~VLSgiGaVsnVTLrqp~~~g~~vtleG~FEILSLsGtis~~  171 (299)
                      ++.++++.+|+|++||++|+||+++|.+||+++++ ++||++++|+|++|+||+++.+. +++++|+|||+||+|||++.
T Consensus        10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~   88 (154)
T 2hx0_A           10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT   88 (154)
T ss_dssp             --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT
T ss_pred             eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC
Confidence            45677899999999999999999999999999995 77888999999999999998644 67899999999999999995


Q ss_pred             CCCCCCCeEEEEEeCCCCcEEceeccc-ceeeccceEEEEeeecCcceeeccccc
Q 022331          172 PAPPGSTGLTIYLAGGQGQVVGGSVVG-SLVASGPVMVIAATFSNATYERLPLDE  225 (299)
Q Consensus       172 ~~~p~~~HLHISLAg~dGqViGGHL~G-~LIAAT~V~VI~asF~n~~yeRlP~~~  225 (299)
                           ..||||+|++.||+|+||||+. ++|. ++++|++..|.+..|+|+|+++
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~-~t~Ev~i~~~~~~~~~R~~D~e  137 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVR-TTLELVIGELPALTFSRQPCAI  137 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEE-EEEEEEEEECTTEEEEEEECTT
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEE-EEEEEEEEEccCceEEEecCCC
Confidence                 5899999999999999999996 5666 4555777789999999999765

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.96  E-value=6.1e-30  Score=215.24  Aligned_cols=120  Identities=20%  Similarity=0.380  Sum_probs=107.9

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCCC---CceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331          102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDP---SAVMAIHGRFEILSLTGAFLPGPAPPGST  178 (299)
Q Consensus       102 r~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~~---g~~vtleG~FEILSLsGtis~~~~~p~~~  178 (299)
                      |+|++||++|+||+++|.+||+++++..|+++++|+|++|+||+++.+   |..++++|+|||+||+|||++.+++| +.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~p-~~   88 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGEP-FV   88 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTEE-EE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCCc-ee
Confidence            799999999999999999999999988888899999999999987653   56789999999999999999987777 89


Q ss_pred             eEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeeccccc
Q 022331          179 GLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDE  225 (299)
Q Consensus       179 HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~~  225 (299)
                      ||||+|+|.||+|+||||+..+++ |.+ |++.+|.+..|+|+| ++
T Consensus        89 HlHi~l~~~~G~v~GGHl~~g~v~-t~E-v~i~~~~~~~~~R~~-~e  132 (143)
T 2dt4_A           89 HAHVSLGNEEGIVFGGHLVEGEVF-VAE-IFLQELKGEKIERKP-TK  132 (143)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEE-EEE-EEEEEEEESCCEEBC-CT
T ss_pred             eEEEEEECCCCCEeCCCCCCCceE-EEE-EEEEEcCCCeEEEeC-CC
Confidence            999999999999999999966655 444 677899999999999 54

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.96  E-value=7.3e-29  Score=209.21  Aligned_cols=119  Identities=18%  Similarity=0.355  Sum_probs=106.1

Q ss_pred             CceEEEEEeCCCccHHHHHHHHHHHcCc-cceEEEeeeeeeeEEecCCCCCCceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331          100 ALKSHVMEIANGADVAETLANFARRRQR-GVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGST  178 (299)
Q Consensus       100 ~mr~hVLrL~~GeDIvesI~~Fa~r~~~-ai~VLSgiGaVsnVTLrqp~~~g~~vtleG~FEILSLsGtis~~~~~p~~~  178 (299)
                      .||+|++||++|+||+++|.+||+++++ ++||++++|+|++++||+++.+ .+++++|+|||+||+|||+++     ..
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~-----~~   74 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ-----HC   74 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS-----CE
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC-----CC
Confidence            3899999999999999999999999995 7888899999999999999864 367899999999999999995     59


Q ss_pred             eEEEEEeCCCCcEEceeccc-ceeeccceEEEEeeecCcceeeccccc
Q 022331          179 GLTIYLAGGQGQVVGGSVVG-SLVASGPVMVIAATFSNATYERLPLDE  225 (299)
Q Consensus       179 HLHISLAg~dGqViGGHL~G-~LIAAT~V~VI~asF~n~~yeRlP~~~  225 (299)
                      ||||+++|.||+|+||||++ ++|. ++++|++..|.+..|+|+|+++
T Consensus        75 HlHisl~~~~G~v~GGHl~~g~~V~-~t~Ev~i~~~~~~~~~R~~D~e  121 (142)
T 2p6y_A           75 HLHIAVADAQGRVWGGHLLEGNLIN-TTAELMIHHYPQHHFTREFDPN  121 (142)
T ss_dssp             EEEEEEECTTSCEEEEEECTTCEEC-C-EEEEEEECTTEEEEEEEETT
T ss_pred             EEEEEEECCCCCEEccccCCCCeEE-EEEEEEEEEccCCeEEEeeCCC
Confidence            99999999999999999996 6775 4555777889999999999765

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.96  E-value=1.4e-29  Score=213.80  Aligned_cols=120  Identities=20%  Similarity=0.285  Sum_probs=109.0

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCCC---CceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331          102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDP---SAVMAIHGRFEILSLTGAFLPGPAPPGST  178 (299)
Q Consensus       102 r~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~~---g~~vtleG~FEILSLsGtis~~~~~p~~~  178 (299)
                      |+|++||++|+||+++|.+||+++++..|+++++|+|++++||+++.+   |.+++++|+|||+||+|||++.+++| +.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~p-~~   88 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKP-FC   88 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTEE-EE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCCc-ee
Confidence            689999999999999999999999987777799999999999998754   46789999999999999999987777 89


Q ss_pred             eEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeeccccc
Q 022331          179 GLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDE  225 (299)
Q Consensus       179 HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~~  225 (299)
                      ||||+|+ .||+|+||||++.+|  .+++|++.+|.+..|+|+|+++
T Consensus        89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e  132 (146)
T 2h6l_A           89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ  132 (146)
T ss_dssp             EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred             eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence            9999999 999999999997776  4666888899999999999875

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.96  E-value=5.3e-29  Score=211.78  Aligned_cols=121  Identities=17%  Similarity=0.236  Sum_probs=108.4

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCCC---CceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331          102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDP---SAVMAIHGRFEILSLTGAFLPGPAPPGST  178 (299)
Q Consensus       102 r~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~~---g~~vtleG~FEILSLsGtis~~~~~p~~~  178 (299)
                      |.|++||++|+||+++|.+||+++++..|+++++|+|++|+|++++.+   |..++++|+|||+||+|||++.+++| +.
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~p-~~   94 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQV-YL   94 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTEE-EE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCCc-eE
Confidence            889999999999999999999999998888899999999999997642   66889999999999999999988877 89


Q ss_pred             eEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeeccccc
Q 022331          179 GLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDE  225 (299)
Q Consensus       179 HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~~  225 (299)
                      |||++|+|.+|+|+||||+.+.|..|.+++| ..+.. .++|.++++
T Consensus        95 HlH~sl~~~~G~v~gGHl~~g~V~~t~Ei~i-~~~~~-~~~R~~D~~  139 (149)
T 3htn_A           95 HLHITVGRSDYSALAGHLLSAIQNGAGEFVV-EDYSE-RISRTYNPD  139 (149)
T ss_dssp             EEEEEEECTTSBEEEEEEEEEEEEEEEEEEE-EECCS-CCEEEEETT
T ss_pred             EEEEEEECCCCCEEeEEeCCCEEEEEEEEEE-EEcCC-eeEEeeCCc
Confidence            9999999999999999999887776666444 57777 899998775

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.94  E-value=1.7e-26  Score=195.82  Aligned_cols=120  Identities=18%  Similarity=0.229  Sum_probs=105.2

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCCC---CceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331          102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDP---SAVMAIHGRFEILSLTGAFLPGPAPPGST  178 (299)
Q Consensus       102 r~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~~---g~~vtleG~FEILSLsGtis~~~~~p~~~  178 (299)
                      |.+++||++|+||+++|.+||+++++..++++++|++++++|++++..   |...+++ ++||+||+|||++.++.| +.
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~p-~~   90 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGKP-SI   90 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTEE-EE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCCc-eE
Confidence            679999999999999999999999998888899999999999987642   5667888 899999999999988877 89


Q ss_pred             eEEEEEeCCCCcEEceecccceeec-cceEEEEeeecCcceeeccccc
Q 022331          179 GLTIYLAGGQGQVVGGSVVGSLVAS-GPVMVIAATFSNATYERLPLDE  225 (299)
Q Consensus       179 HLHISLAg~dGqViGGHL~G~LIAA-T~V~VI~asF~n~~yeRlP~~~  225 (299)
                      |||++++|.+|+|+||||....|.+ |.+++|. .+ +..++|.++++
T Consensus        91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~-~~-~~~~~R~~D~~  136 (147)
T 3hwu_A           91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVT-VY-PQRLDRFVDPE  136 (147)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEE-EE-SSCCBEEEETT
T ss_pred             EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEE-Ec-CCeEEEEECCc
Confidence            9999999999999999999777775 6665554 55 45999999765

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=97.36  E-value=7.8e-05  Score=46.84  Aligned_cols=17  Identities=65%  Similarity=1.109  Sum_probs=14.5

Q ss_pred             cCCCCCCCCCCCCCCCC
Q 022331           72 STRRPRGRPPGSKNKPK   88 (299)
Q Consensus        72 ~~rrpRGRP~GSknKpk   88 (299)
                      ..|||||||.|||||.-
T Consensus         3 tpKrpRgRpkGSKNk~~   19 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKGA   19 (26)
T ss_dssp             SCCCCSSCCTTCCCCSC
T ss_pred             CCcCCCCCcCcccccCc
Confidence            35999999999999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	4e-27
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	6e-18

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score =  100 bits (251), Expect = 4e-27
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 97  SPNALKSHVMEIANGADVAETLANFARRRQ-RGVCVLSGSGTVTNVTLRQPSDPSAVMAI 155
           + +  + + + +  G +V   L  F ++ Q R   +   +G++T+V LR     +    +
Sbjct: 2   NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTS-L 60

Query: 156 HGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSN 215
            G FE++SL G             L + ++   G ++GG ++        + ++      
Sbjct: 61  TGTFEVISLNGTLELT-----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPA 115

Query: 216 ATYERLPLDE 225
            T+ R P   
Sbjct: 116 LTFSRQPCAI 125

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 76.5 bits (188), Expect = 6e-18
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDPSAVMAIH---GR 158
           K  ++ +  G D+   +  F   +      +S  G V +  +                  
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 159 FEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATY 218
            EILSL+G      + P    + + L G  G+V GG +  + V +  V V+    S    
Sbjct: 70  LEILSLSGNVSMKDSKP-FCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVL--PLSGEAP 125

Query: 219 ERLPLDEE 226
           ER   DE+
Sbjct: 126 ERAF-DEQ 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.96
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.94

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=5.9e-29  Score=206.70  Aligned_cols=124  Identities=20%  Similarity=0.389  Sum_probs=112.7

Q ss_pred             CCCCceEEEEEeCCCccHHHHHHHHHHHcC-ccceEEEeeeeeeeEEecCCCCCCceeeeeeeEEEEEeeeeccCCCCCC
Q 022331           97 SPNALKSHVMEIANGADVAETLANFARRRQ-RGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPP  175 (299)
Q Consensus        97 s~~~mr~hVLrL~~GeDIvesI~~Fa~r~~-~ai~VLSgiGaVsnVTLrqp~~~g~~vtleG~FEILSLsGtis~~~~~p  175 (299)
                      +.+..|.|++||++||||+++|.+||++++ ++++|++++|++++|+|++++. .....++++|||+||+|||++.    
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~sl~G~I~~~----   76 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLELT----   76 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEETT----
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEEEEEEeccC----
Confidence            467889999999999999999999999999 5888999999999999999985 5566899999999999999987    


Q ss_pred             CCCeEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeecccccc
Q 022331          176 GSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDEE  226 (299)
Q Consensus       176 ~~~HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~~~  226 (299)
                       ..|||++|+|.+|+|+||||++.++++++++|++.+|.+..|+|.++++.
T Consensus        77 -~~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D~~t  126 (136)
T d2hx0a1          77 -GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAIS  126 (136)
T ss_dssp             -EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTTT
T ss_pred             -CCeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccCCCC
Confidence             37999999999999999999987777777889999999999999996653

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=7.1e-28  Score=199.06  Aligned_cols=120  Identities=19%  Similarity=0.291  Sum_probs=107.0

Q ss_pred             eEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCC---CCceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331          102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSD---PSAVMAIHGRFEILSLTGAFLPGPAPPGST  178 (299)
Q Consensus       102 r~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~---~g~~vtleG~FEILSLsGtis~~~~~p~~~  178 (299)
                      |.|++||++||||+++|.+||+++++..|+++++|++++|+|++++.   .|..+.++|+|||+||+|||...+++| +.
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~p-~~   88 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKP-FC   88 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTEE-EE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCCc-EE
Confidence            88999999999999999999999999999999999999999997654   367889999999999999999988887 89


Q ss_pred             eEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeeccccc
Q 022331          179 GLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDE  225 (299)
Q Consensus       179 HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~~  225 (299)
                      |+|+++++ +|+++||||+.+++.++ ++|| -++.+..++|.|+++
T Consensus        89 HlH~~~~~-~g~~~gGHl~~~~v~~~-e~~i-~~~~~~~~~R~~D~~  132 (138)
T d2h6la1          89 HIHVLLGK-DGEVYGGHLFSAEVFAC-EVFV-LPLSGEAPERAFDEQ  132 (138)
T ss_dssp             EEEEEEEE-BTEEEEEEEEEEEEEEE-EEEE-EECBSCCCBEEECTT
T ss_pred             EEEEEECC-CCCEEEEEeCccEEEEE-EEEE-EEecCCceEEecCCc
Confidence            99999997 79999999998888754 3333 369999999998664