Citrus Sinensis ID: 022337
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9W0 | 263 | ABC transporter I family | yes | no | 0.875 | 0.992 | 0.7 | 1e-105 | |
| Q0D9V6 | 346 | Protein STAR1 OS=Oryza sa | yes | no | 0.882 | 0.760 | 0.686 | 1e-97 | |
| Q8RCU0 | 239 | Phosphate import ATP-bind | yes | no | 0.674 | 0.841 | 0.475 | 3e-48 | |
| Q8R9I2 | 249 | Phosphate import ATP-bind | no | no | 0.651 | 0.779 | 0.471 | 1e-43 | |
| O27764 | 253 | Phosphate import ATP-bind | yes | no | 0.667 | 0.786 | 0.448 | 5e-42 | |
| Q12XW6 | 255 | Phosphate import ATP-bind | yes | no | 0.661 | 0.772 | 0.454 | 6e-42 | |
| Q9X0Y8 | 251 | Phosphate import ATP-bind | yes | no | 0.651 | 0.772 | 0.459 | 2e-41 | |
| O28912 | 251 | Phosphate import ATP-bind | yes | no | 0.661 | 0.784 | 0.443 | 2e-40 | |
| Q2NHW1 | 252 | Phosphate import ATP-bind | yes | no | 0.708 | 0.837 | 0.410 | 1e-39 | |
| Q3AAA4 | 253 | Phosphate import ATP-bind | yes | no | 0.674 | 0.794 | 0.425 | 4e-39 |
| >sp|Q9C9W0|AB17I_ARATH ABC transporter I family member 17 OS=Arabidopsis thaliana GN=ABCI17 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/270 (70%), Positives = 225/270 (83%), Gaps = 9/270 (3%)
Query: 29 MPSTCSLFRD-EVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEI 87
MPS S D +REHL+ V +PK RV +L + +DDG+ ILKGV ++I
Sbjct: 1 MPSLWSNESDGSLREHLVDVVVSG--------SEPKIRVHDLTRVADDGSRILKGVTIDI 52
Query: 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIP 147
PKG+I+G+IGPSGSGKST LR+LNRLWEPP TVFLDG DIT++DV++LRR+VGMLFQ+P
Sbjct: 53 PKGMIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITNVDVIALRRRVGMLFQLP 112
Query: 148 ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207
LF+GTV DN+RYGP LRG+KL++ EVYKLLSLADLD+SF KTG E+SVGQAQRVALAR
Sbjct: 113 VLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALAR 172
Query: 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267
TLANEPEVLLLDEPTSALDPIST+NIEDV+VKLKK+ G+T V+VSHSIKQIQ++AD+VCL
Sbjct: 173 TLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCL 232
Query: 268 LVNGEIVEVLKPDLLSEAKHPMALRFLQLS 297
+V+GEIVEVLKP LS A HPMA RFLQLS
Sbjct: 233 VVDGEIVEVLKPSELSHATHPMAQRFLQLS 262
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0D9V6|STAR1_ORYSJ Protein STAR1 OS=Oryza sativa subsp. japonica GN=STAR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 182/265 (68%), Positives = 214/265 (80%), Gaps = 2/265 (0%)
Query: 34 SLFRDEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDD-GAPILKGVNMEIPKGVI 92
S +VREHLL V G E PK RVR L + S+ G IL+GV++++P+GV+
Sbjct: 83 SASEHDVREHLLDVDG-VGEEGAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVV 141
Query: 93 MGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG 152
+G+IGPSGSGKSTLLRALNRLWEP G V LDG DI +DVL+LRRKVGMLFQ+PA+F+G
Sbjct: 142 VGVIGPSGSGKSTLLRALNRLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDG 201
Query: 153 TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212
TV DN+RYGPQL+GKKLT+ EV LLSLADLD + +K E+SVGQAQRVALARTLAN+
Sbjct: 202 TVADNVRYGPQLQGKKLTDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLAND 261
Query: 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272
PEVLLLDEPTSALDPISTQNIE+ +V+LKK G+T VMVSHS+KQIQRIAD+VCLLV GE
Sbjct: 262 PEVLLLDEPTSALDPISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGE 321
Query: 273 IVEVLKPDLLSEAKHPMALRFLQLS 297
+VEVL P LSEAKHPMA RFL+LS
Sbjct: 322 VVEVLPPSELSEAKHPMARRFLELS 346
|
Associates with STAR2 to form a functional transmembrane ABC transporter required for detoxification of aluminum (Al) in roots. Can specifically transport UDP-glucose. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8RCU0|PSTB1_THETN Phosphate import ATP-binding protein PstB 1 OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pstB1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 138/204 (67%), Gaps = 3/204 (1%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
DG ILK V + K I ++GPSG+GKST+L+ +NRL EP G +F++G + ++DV+
Sbjct: 13 DGKYILKNVYFKFEKNGIYTVVGPSGAGKSTMLKLINRLIEPTEGAIFINGVEYKNIDVI 72
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE 194
LRRK+GM+FQ P LFEGTV +NI GP LRG+K + Y L L +L K
Sbjct: 73 LLRRKIGMVFQRPFLFEGTVKENIELGPSLRGEKNIDALFY--LEAVGLSKDYLFKDVNN 130
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
+S G+AQRV++AR LAN PEVLLLDEPTS+LDP ST IE+++ +L + G+ +++V+H+
Sbjct: 131 LSGGEAQRVSIARALANSPEVLLLDEPTSSLDPTSTSIIEELIKRL-NREGIMVILVTHN 189
Query: 255 IKQIQRIADVVCLLVNGEIVEVLK 278
++Q +RI D L GE++E K
Sbjct: 190 MEQAKRIGDYTLFLYKGELIEARK 213
|
Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system. Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q8R9I2|PSTB2_THETN Phosphate import ATP-binding protein PstB 2 OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pstB2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 141/208 (67%), Gaps = 14/208 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDIT-DLDV 133
LK +N+++ ++ +IGPSG GKST +R LNR+ + SGTV LDG+DI ++DV
Sbjct: 19 LKKINLDVEPNSVLALIGPSGCGKSTFIRTLNRMNDLIEGVKISGTVLLDGKDIYKEVDV 78
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG--KKLTENEVY----KLLSLADLDSSF 187
+ LR+KVGM+FQ P F TV DN+ YGP++ G K T NE+ K +L D
Sbjct: 79 IELRKKVGMVFQKPNPFPMTVYDNVAYGPRIHGIRDKRTLNEIVEKSLKAAALWDEVKDR 138
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
L+ + +S GQ QR+ +ARTLA EPEV+L+DEPTSALDPIST IE+++ +LKKK+ T
Sbjct: 139 LHHSALSLSGGQQQRLCIARTLAVEPEVILMDEPTSALDPISTMKIEELIEELKKKY--T 196
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
I++V+H+++Q R++D +NGE+VE
Sbjct: 197 IIIVTHNMQQAGRVSDYTAFFLNGELVE 224
|
Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system. Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|O27764|PSTB_METTH Phosphate import ATP-binding protein PstB OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=pstB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 140/214 (65%), Gaps = 15/214 (7%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-----TVFLDGRDIT 129
D A ILK +N++IPK + +IGPSG GKST +R LNR+ + SG V+LDG+DI
Sbjct: 17 DEAHILKDINLKIPKNTVTALIGPSGCGKSTFIRTLNRMNDVISGFRHEGHVYLDGKDIY 76
Query: 130 D--LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLL---SLA 181
D +DV+ LR+KVGM+FQ P F ++ +N+ YG ++ G + E V + L +L
Sbjct: 77 DPDMDVVELRKKVGMVFQKPNPFPKSIFENVAYGLRVHGYDDRDFIEERVEESLRAAALW 136
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
D L+K+ +S GQ QR+ +ART+A EPEV+L+DEP SALDPIST IED++ KLK
Sbjct: 137 DEVKDKLDKSALGLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTTKIEDLIHKLK 196
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+ TI++V+H+++Q R++ ++GEIVE
Sbjct: 197 NDY--TIIIVTHNMQQATRVSKYTAFFLHGEIVE 228
|
Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system. Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q12XW6|PSTB_METBU Phosphate import ATP-binding protein PstB OS=Methanococcoides burtonii (strain DSM 6242) GN=pstB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (433), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 138/211 (65%), Gaps = 14/211 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132
LK ++++IP+ + +IGPSG GKST LR LNR+ + G V +DG +I D +D
Sbjct: 25 LKDISLDIPEKSVTALIGPSGCGKSTFLRCLNRMNDLVKSCSIEGEVLVDGENIYDKDVD 84
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNK 190
V+ LR+ VGM+FQ P F ++ DNI YGP++ G K TE V+K L A L ++
Sbjct: 85 VVDLRKNVGMVFQKPNPFPMSIYDNIAYGPKIHGCSKSETEERVHKALDDAALMGEVQDR 144
Query: 191 TGGE---ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
G + +S GQ QR+ +ARTLA +PE+LL DEP SALDPIST IED++++LKK + T
Sbjct: 145 LGDQAFSLSGGQQQRLCIARTLAVKPEILLFDEPCSALDPISTSKIEDLILELKKDY--T 202
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278
IV+V+H+++Q RI+D ++GEI+E K
Sbjct: 203 IVIVTHNMQQAARISDHTAFFLHGEIIEFGK 233
|
Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system. Methanococcoides burtonii (strain DSM 6242) (taxid: 259564) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q9X0Y8|PSTB_THEMA Phosphate import ATP-binding protein PstB OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=pstB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 133/209 (63%), Gaps = 15/209 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LD 132
+K V M+I K I IIGPSG GK+TLLR++NR+ + G ++ G+DI D LD
Sbjct: 20 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHLPGFRVEGKIYFKGQDIYDPQLD 79
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE------NEVYKLLSLADLDSS 186
V R++VGM+FQ P F ++ DN+ +GP++ G K E K +L D S
Sbjct: 80 VTEYRKRVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHILDRIVEESLKKAALWDEVKS 139
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
LNK+G +S GQ QR+ +AR LA EPEV+LLDEPTSALDPI+TQ IE +L +L + +
Sbjct: 140 ELNKSGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENY-- 197
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TIV+V+H+I Q RIAD + + GE++E
Sbjct: 198 TIVIVTHNIGQAIRIADYIAFMYRGELIE 226
|
Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system. Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|O28912|PSTB_ARCFU Phosphate import ATP-binding protein PstB OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=pstB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 133/212 (62%), Gaps = 15/212 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132
++ VN+EI + + IIGPSG GKSTLLR+LNRL E G V DG++I D +D
Sbjct: 20 IRNVNLEIYRNKVTAIIGPSGCGKSTLLRSLNRLIELVDGVRIEGEVIFDGKNIYDDGVD 79
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE------NEVYKLLSLADLDSS 186
+ LRR++GM+FQ P F ++ DN+ YGP++ G K E E K +L D
Sbjct: 80 AVELRRRIGMVFQHPNPFPKSIFDNVAYGPRVHGIKDKERLKEIVEESLKKAALWDEVKD 139
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+ + +S GQ QR+ +AR +A PEV+L DEPTSALDPI+ IE+++V+LKK +
Sbjct: 140 RLSDSALGLSGGQQQRLCIARAIATNPEVILFDEPTSALDPIAAAKIEELMVELKKNY-- 197
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278
T+V+V+H+I+Q RI+D V GE+VE K
Sbjct: 198 TVVVVTHNIQQAARISDYVAFFWMGELVEYGK 229
|
Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system. Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q2NHW1|PSTB_METST Phosphate import ATP-binding protein PstB OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pstB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 143/229 (62%), Gaps = 18/229 (7%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGT 120
V+ L DD +LK +N +I K + +IGPSG GKST LR LNR+ + G
Sbjct: 8 VKNLNTYFDD-HNVLKNINTDIEKNSVTALIGPSGCGKSTFLRTLNRMNDLIPIFRKEGQ 66
Query: 121 VFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLL 178
+ LDG+DI D +DV+ LR+KVGM+FQ F ++ DN+ YG ++ G+K E+++ K++
Sbjct: 67 ILLDGKDIYDNNVDVVELRKKVGMVFQKANPFPKSIYDNVAYGLRIHGEK-DEDKIEKIV 125
Query: 179 -------SLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
+L D L+K+ +S GQ QR+ +ART+A PE++L+DEP SALDPIST
Sbjct: 126 KKSLKAAALWDEVEDKLDKSALGLSGGQQQRLCIARTIAVSPEIILMDEPCSALDPISTI 185
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
+ED++ +LKK + TIV+V+H+++Q R++ +NGEI+E D
Sbjct: 186 KVEDLINQLKKDY--TIVIVTHNMQQATRVSKYTSFFLNGEIIETGNTD 232
|
Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system. Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q3AAA4|PSTB_CARHZ Phosphate import ATP-binding protein PstB OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pstB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 140/216 (64%), Gaps = 15/216 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDIT--DLD 132
LK ++++I K + +IGPSG GKST LR LNR+ + G++ DG DI + D
Sbjct: 22 LKNISLDIYKNEVTALIGPSGCGKSTFLRTLNRMNDLIPGVRIEGSILFDGVDIYKENFD 81
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSS 186
V+ LR++VGM+FQ P F +V +N+ Y P++ G +KL E + + +L D
Sbjct: 82 VVELRKRVGMVFQSPNPFPKSVYENVAYAPKIHGLKDKRKLDEIVEKSLRGAALWDEVKD 141
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+K +S GQ QR+ +AR LA EPEVLL+DEPTSALDPIST IE+++ +LKKK+
Sbjct: 142 RLHKPATGLSGGQQQRLCIARALAIEPEVLLMDEPTSALDPISTMRIEELIQELKKKY-- 199
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
TIV+V+H+++Q RI+D +NGE++E+ + +++
Sbjct: 200 TIVIVTHNMQQAARISDRTAFFLNGELIEMDRTEVI 235
|
Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system. Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | ||||||
| 255562070 | 276 | phosphate abc transporter, putative [Ric | 0.892 | 0.963 | 0.779 | 1e-113 | |
| 224144230 | 272 | predicted protein [Populus trichocarpa] | 0.845 | 0.926 | 0.808 | 1e-111 | |
| 225445992 | 268 | PREDICTED: ABC transporter I family memb | 0.828 | 0.921 | 0.802 | 1e-111 | |
| 147791112 | 251 | hypothetical protein VITISV_010974 [Viti | 0.822 | 0.976 | 0.813 | 1e-110 | |
| 297841533 | 262 | ATNAP3 [Arabidopsis lyrata subsp. lyrata | 0.875 | 0.996 | 0.710 | 1e-104 | |
| 15220604 | 263 | ABC transporter I family member 17 [Arab | 0.875 | 0.992 | 0.7 | 1e-103 | |
| 356524710 | 260 | PREDICTED: ABC transporter I family memb | 0.848 | 0.973 | 0.730 | 1e-103 | |
| 4586576 | 261 | multidrug resistance protein [Cicer arie | 0.865 | 0.988 | 0.722 | 1e-103 | |
| 449466057 | 269 | PREDICTED: ABC transporter I family memb | 0.845 | 0.936 | 0.734 | 1e-102 | |
| 357521679 | 255 | ABC transporter I family member [Medicag | 0.835 | 0.976 | 0.723 | 1e-100 |
| >gi|255562070|ref|XP_002522043.1| phosphate abc transporter, putative [Ricinus communis] gi|223538642|gb|EEF40243.1| phosphate abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/267 (77%), Positives = 230/267 (86%), Gaps = 1/267 (0%)
Query: 31 STCSLFRDEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKG 90
S S D EHLLTV + E+ DN + KFR+R L +E+D GA IL GVN+++PKG
Sbjct: 10 SRVSAANDGTLEHLLTVT-DIESATDNDDNQYKFRIRNLTRETDGGAKILNGVNLDVPKG 68
Query: 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF 150
VI+GI+GPSGSGKST LR+LNRLWEPP GTVFLDG DI DLDVLSLRRKVGMLFQIP LF
Sbjct: 69 VIVGIVGPSGSGKSTFLRSLNRLWEPPPGTVFLDGCDIRDLDVLSLRRKVGMLFQIPVLF 128
Query: 151 EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210
EGT+ DNIRYGPQLRGKKL++NEV+KLL LADLDSSF K GE+SVGQAQRVALARTLA
Sbjct: 129 EGTIADNIRYGPQLRGKKLSDNEVHKLLILADLDSSFHKKNYGELSVGQAQRVALARTLA 188
Query: 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270
NEPEVLLLDEPTSALDPISTQNIE+V+VKLKK GMTIVMVSHSIKQIQR+ADVVCLLVN
Sbjct: 189 NEPEVLLLDEPTSALDPISTQNIEEVIVKLKKNQGMTIVMVSHSIKQIQRVADVVCLLVN 248
Query: 271 GEIVEVLKPDLLSEAKHPMALRFLQLS 297
GE+VEVLKP+ LSEAKHPMA RFLQLS
Sbjct: 249 GEVVEVLKPNELSEAKHPMAQRFLQLS 275
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144230|ref|XP_002325227.1| predicted protein [Populus trichocarpa] gi|222866661|gb|EEF03792.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/256 (80%), Positives = 227/256 (88%), Gaps = 4/256 (1%)
Query: 41 REHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSG 100
+E LL V EA A+D + KFR+R L K SD G PIL G+NM+IPKG+I+GIIGPSG
Sbjct: 19 QEPLLAVNVEA-AKDGAE---AKFRIRNLTKVSDAGVPILNGINMDIPKGMIVGIIGPSG 74
Query: 101 SGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRY 160
SGKST+LRALNRLWEPPSGTVFLDG D+ DLDVL RRKVGMLFQ+PALF+GTV DNIRY
Sbjct: 75 SGKSTVLRALNRLWEPPSGTVFLDGHDVKDLDVLGHRRKVGMLFQLPALFDGTVADNIRY 134
Query: 161 GPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220
GPQL+GKKLT++EVYKLLSLADLDSSF KT E+SVGQAQRVALARTLANEPEVLLLDE
Sbjct: 135 GPQLKGKKLTDDEVYKLLSLADLDSSFYKKTSNELSVGQAQRVALARTLANEPEVLLLDE 194
Query: 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
PTSALDPISTQNIEDVLVKLKK+ G+T+V+VSHSIKQIQRIADVVCLLVNGEIVEVLKPD
Sbjct: 195 PTSALDPISTQNIEDVLVKLKKQQGLTVVIVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 254
Query: 281 LLSEAKHPMALRFLQL 296
LSEAKHPMA RFLQL
Sbjct: 255 DLSEAKHPMAQRFLQL 270
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445992|ref|XP_002266816.1| PREDICTED: ABC transporter I family member 17 [Vitis vinifera] gi|297735429|emb|CBI17869.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/248 (80%), Positives = 225/248 (90%), Gaps = 1/248 (0%)
Query: 50 EAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRA 109
+ E E+D + +KPKFRVR L K S+ G IL+G+++++PKG I+G+IGPSGSGKSTLLR
Sbjct: 21 QVEEEEDGE-RKPKFRVRNLIKVSESGEAILRGIDVDVPKGAIVGVIGPSGSGKSTLLRV 79
Query: 110 LNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL 169
LNRLWEPPSGTV+LDG DI +LDVL LRRKVGMLFQ+P LFEGTV DNIRYGPQLRGKKL
Sbjct: 80 LNRLWEPPSGTVYLDGTDIRELDVLGLRRKVGMLFQLPVLFEGTVADNIRYGPQLRGKKL 139
Query: 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229
T+NEV KLL+LADLDSSF+ KTGGE+SVGQAQRVALARTLANEPEVLLLDEPTSALDPIS
Sbjct: 140 TDNEVLKLLTLADLDSSFMKKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 199
Query: 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289
TQNIEDV+VKLKK GMT+VMVSHSIKQIQRIAD VCLLV+GEI+EVL+PD LSEA+HPM
Sbjct: 200 TQNIEDVIVKLKKSRGMTVVMVSHSIKQIQRIADRVCLLVDGEIIEVLEPDKLSEARHPM 259
Query: 290 ALRFLQLS 297
ALRFLQLS
Sbjct: 260 ALRFLQLS 267
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147791112|emb|CAN70271.1| hypothetical protein VITISV_010974 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/246 (81%), Positives = 223/246 (90%), Gaps = 1/246 (0%)
Query: 52 EAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN 111
E E+D + +KPKFRVR L K S+ G IL+G+++++PKG I+G+IGPSGSGKSTLLR LN
Sbjct: 6 EEEEDGE-RKPKFRVRNLIKVSESGEAILRGIDVDVPKGAIVGVIGPSGSGKSTLLRVLN 64
Query: 112 RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE 171
RLWEPPSGTV+LDG DI +LDVL LRRKVGMLFQ+P LFEGTV DNIRYGPQLRGKKLT+
Sbjct: 65 RLWEPPSGTVYLDGTDIRELDVLGLRRKVGMLFQLPVLFEGTVADNIRYGPQLRGKKLTD 124
Query: 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
NEV KLL+LADLDSSF+ KTGGE+SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ
Sbjct: 125 NEVLKLLTLADLDSSFMKKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 184
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291
NIEDV+VKLKK GMTIVMVSHSIKQIQRIAD VCLLV+GEI EVL+PD LSEA+HPMAL
Sbjct: 185 NIEDVIVKLKKSRGMTIVMVSHSIKQIQRIADRVCLLVDGEITEVLEPDKLSEARHPMAL 244
Query: 292 RFLQLS 297
RFLQLS
Sbjct: 245 RFLQLS 250
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841533|ref|XP_002888648.1| ATNAP3 [Arabidopsis lyrata subsp. lyrata] gi|297334489|gb|EFH64907.1| ATNAP3 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/269 (71%), Positives = 227/269 (84%), Gaps = 8/269 (2%)
Query: 29 MPSTCSLFRDEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIP 88
MPS S D +REHL+ V G + +E PK RV +L + +DDG+ ILKGV ++IP
Sbjct: 1 MPSLWSNESDGLREHLVDV-GVSGSE-------PKIRVHDLTRVADDGSRILKGVTVDIP 52
Query: 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA 148
KG+I+G+IGPSGSGKST LR+LNRLWEPP TVFLDG DIT +DV++LRR+VGMLFQ+P
Sbjct: 53 KGLIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITKVDVIALRRRVGMLFQLPV 112
Query: 149 LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208
LF+GTV DN+RYGP LRG+KL++ EVYKLLSLADLD+SF KTG E+SVGQAQRVALART
Sbjct: 113 LFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALART 172
Query: 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268
LANEPEVLLLDEPTSALDPIST+NIEDV+VKLKK+ G+T V+VSHSIKQIQ++AD+VCL+
Sbjct: 173 LANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCLI 232
Query: 269 VNGEIVEVLKPDLLSEAKHPMALRFLQLS 297
V+GEIVEVLKP LS A HPMA RFLQLS
Sbjct: 233 VDGEIVEVLKPSELSHATHPMAQRFLQLS 261
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220604|ref|NP_176961.1| ABC transporter I family member 17 [Arabidopsis thaliana] gi|75333593|sp|Q9C9W0.1|AB17I_ARATH RecName: Full=ABC transporter I family member 17; Short=ABC transporter ABCI.17; Short=AtABCI17; AltName: Full=MRP-related protein 1; AltName: Full=Non-intrinsic ABC protein 3 gi|12324076|gb|AAG52004.1|AC012563_14 putative ABC transporter; 66585-65723 [Arabidopsis thaliana] gi|21554406|gb|AAM63511.1| putative ABC transporter [Arabidopsis thaliana] gi|26450485|dbj|BAC42356.1| putative ABC transporter [Arabidopsis thaliana] gi|28827588|gb|AAO50638.1| putative ABC transporter protein [Arabidopsis thaliana] gi|298286464|dbj|BAJ09459.1| sensitive to aluminum rhizotoxicity 1 [Arabidopsis thaliana] gi|332196603|gb|AEE34724.1| ABC transporter I family member 17 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/270 (70%), Positives = 225/270 (83%), Gaps = 9/270 (3%)
Query: 29 MPSTCSLFRD-EVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEI 87
MPS S D +REHL+ V +PK RV +L + +DDG+ ILKGV ++I
Sbjct: 1 MPSLWSNESDGSLREHLVDVVVSG--------SEPKIRVHDLTRVADDGSRILKGVTIDI 52
Query: 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIP 147
PKG+I+G+IGPSGSGKST LR+LNRLWEPP TVFLDG DIT++DV++LRR+VGMLFQ+P
Sbjct: 53 PKGMIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITNVDVIALRRRVGMLFQLP 112
Query: 148 ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207
LF+GTV DN+RYGP LRG+KL++ EVYKLLSLADLD+SF KTG E+SVGQAQRVALAR
Sbjct: 113 VLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALAR 172
Query: 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267
TLANEPEVLLLDEPTSALDPIST+NIEDV+VKLKK+ G+T V+VSHSIKQIQ++AD+VCL
Sbjct: 173 TLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCL 232
Query: 268 LVNGEIVEVLKPDLLSEAKHPMALRFLQLS 297
+V+GEIVEVLKP LS A HPMA RFLQLS
Sbjct: 233 VVDGEIVEVLKPSELSHATHPMAQRFLQLS 262
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524710|ref|XP_003530971.1| PREDICTED: ABC transporter I family member 17-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/256 (73%), Positives = 217/256 (84%), Gaps = 3/256 (1%)
Query: 42 EHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGS 101
E LL V G D + KPKF +R L + S+DG PILKG+N+EIP+GVI+G+IGPSGS
Sbjct: 7 ECLLEVDGYG---DGDGKAKPKFLIRNLSRVSEDGVPILKGINLEIPEGVIVGVIGPSGS 63
Query: 102 GKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYG 161
GKST LRALNRLWEPPS +VFLD +DI LDVLSLRR V MLFQ+PALFEG+V DN+RYG
Sbjct: 64 GKSTFLRALNRLWEPPSASVFLDAQDICHLDVLSLRRNVAMLFQLPALFEGSVADNVRYG 123
Query: 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221
PQLRGKKL+++EV KLL +ADLD+SF++K+G E+SVGQAQRVALARTLAN P+VLLLDEP
Sbjct: 124 PQLRGKKLSDDEVRKLLLMADLDASFMDKSGAELSVGQAQRVALARTLANSPQVLLLDEP 183
Query: 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281
TSALDPIST+NIED LVKL K GMT++MVSHSIKQIQRIA +VCLLV+GEIVEVL P
Sbjct: 184 TSALDPISTENIEDALVKLNKNQGMTVIMVSHSIKQIQRIAHIVCLLVDGEIVEVLNPHN 243
Query: 282 LSEAKHPMALRFLQLS 297
LS+A HPMA RFLQLS
Sbjct: 244 LSQANHPMAKRFLQLS 259
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4586576|dbj|BAA76420.1| multidrug resistance protein [Cicer arietinum] | Back alignment and taxonomy information |
|---|
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/259 (72%), Positives = 224/259 (86%), Gaps = 1/259 (0%)
Query: 41 REHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPS 99
REHLL V + E+++ +KPKF+++ LRK SDDG IL G+ ++IPKGVI+GIIGPS
Sbjct: 3 REHLLDVEEQHYDEEEDLKRKPKFQIQNLRKLSDDGKIHILNGITLDIPKGVIVGIIGPS 62
Query: 100 GSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR 159
GSGKSTLLRALNRLWEPPS +VFLD +DI LDVLSLRRKV MLFQ+PALFEGTV +N+R
Sbjct: 63 GSGKSTLLRALNRLWEPPSSSVFLDAQDICHLDVLSLRRKVAMLFQLPALFEGTVAENVR 122
Query: 160 YGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219
YGPQLRG KLT+++V KLL +ADLD+SF++K+G ++SVGQAQRVALARTLAN+PEVLLLD
Sbjct: 123 YGPQLRGIKLTDDDVSKLLLMADLDASFMDKSGADLSVGQAQRVALARTLANQPEVLLLD 182
Query: 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
EPTSALDPIST+NIE L+KL K GMT++MVSHSIKQIQR+A VVCLLV+G+IVEVLKP
Sbjct: 183 EPTSALDPISTENIEAALMKLNKSQGMTLIMVSHSIKQIQRMAHVVCLLVDGQIVEVLKP 242
Query: 280 DLLSEAKHPMALRFLQLSG 298
LS+AKHPMA RFL+LS
Sbjct: 243 HQLSQAKHPMARRFLELSN 261
|
Source: Cicer arietinum Species: Cicer arietinum Genus: Cicer Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466057|ref|XP_004150743.1| PREDICTED: ABC transporter I family member 17-like [Cucumis sativus] gi|449506635|ref|XP_004162805.1| PREDICTED: ABC transporter I family member 17-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/260 (73%), Positives = 221/260 (85%), Gaps = 8/260 (3%)
Query: 38 DEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIG 97
D +REHLL V +E+ K R+R L + IL+G++++IPKG I+GIIG
Sbjct: 17 DGLREHLLVV--NEGSENGGVGDHVKIRIRNLTNQ------ILRGISVDIPKGKIVGIIG 68
Query: 98 PSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDN 157
PSG GKST LRALNRLWEPP+G+VFLDG+DI +LDVL LRRKVGMLFQIP LFEGTV DN
Sbjct: 69 PSGGGKSTTLRALNRLWEPPAGSVFLDGQDIVNLDVLGLRRKVGMLFQIPVLFEGTVADN 128
Query: 158 IRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217
IRYGPQLRGKKL+++EV+KLLSLADLDSSF +K G E+SVGQAQRVALARTLAN PEVLL
Sbjct: 129 IRYGPQLRGKKLSDDEVHKLLSLADLDSSFFSKIGSELSVGQAQRVALARTLANAPEVLL 188
Query: 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277
LDEPTSALDPIST+NIEDVLV+LK + G+TIVMVSHSIKQIQRIAD+VCLLVNGEIVE+L
Sbjct: 189 LDEPTSALDPISTENIEDVLVRLKTRWGLTIVMVSHSIKQIQRIADIVCLLVNGEIVEIL 248
Query: 278 KPDLLSEAKHPMALRFLQLS 297
P+ LSEAKHPMAL+FL+LS
Sbjct: 249 PPNKLSEAKHPMALKFLELS 268
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521679|ref|XP_003631128.1| ABC transporter I family member [Medicago truncatula] gi|217072754|gb|ACJ84737.1| unknown [Medicago truncatula] gi|355525150|gb|AET05604.1| ABC transporter I family member [Medicago truncatula] gi|388494374|gb|AFK35253.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/260 (72%), Positives = 221/260 (85%), Gaps = 11/260 (4%)
Query: 40 VREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGP 98
V EHLL V + Q+PK +++ LRKESDDG ILKG+ ++IPKG+++GIIGP
Sbjct: 4 VLEHLLDV---------EEQQQPKIQIKNLRKESDDGKLQILKGITVDIPKGMVVGIIGP 54
Query: 99 SGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158
SGSGKSTLLRA+NRLWEPPS +VFLDG DI +LDVLSLRRKV MLFQ+PALFEGTV DN+
Sbjct: 55 SGSGKSTLLRAMNRLWEPPSSSVFLDGVDICNLDVLSLRRKVAMLFQLPALFEGTVADNV 114
Query: 159 RYGPQLRGKKLTENEVYKLLSLADLD-SSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217
RYGPQLRG KLT++EV KLL +ADLD S+F +K+G E+SVGQAQRVALARTLAN PEVLL
Sbjct: 115 RYGPQLRGIKLTDDEVGKLLLMADLDASTFKDKSGAELSVGQAQRVALARTLANSPEVLL 174
Query: 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277
LDEPTSALDPIST+NIE L+KL K GMT++MVSHSIKQIQR+ADVVCL+V+GEIVEVL
Sbjct: 175 LDEPTSALDPISTENIEGALMKLNKNQGMTLIMVSHSIKQIQRMADVVCLVVDGEIVEVL 234
Query: 278 KPDLLSEAKHPMALRFLQLS 297
KP+ LS+A HPMA RFL+LS
Sbjct: 235 KPNQLSQANHPMARRFLELS 254
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | ||||||
| TAIR|locus:2200226 | 263 | ABCI17 "ATP-binding cassette I | 0.875 | 0.992 | 0.662 | 1.4e-89 | |
| UNIPROTKB|Q0D9V6 | 346 | STAR1 "Protein STAR1" [Oryza s | 0.865 | 0.745 | 0.669 | 5.4e-86 | |
| TIGR_CMR|CHY_2116 | 253 | CHY_2116 "phosphate ABC transp | 0.728 | 0.857 | 0.403 | 3.9e-37 | |
| TIGR_CMR|DET_0141 | 251 | DET_0141 "phosphate ABC transp | 0.654 | 0.776 | 0.414 | 1.5e-35 | |
| TIGR_CMR|CPS_3640 | 279 | CPS_3640 "phosphate ABC transp | 0.651 | 0.695 | 0.411 | 7.4e-34 | |
| UNIPROTKB|P30750 | 343 | metN [Escherichia coli K-12 (t | 0.718 | 0.623 | 0.370 | 9.5e-34 | |
| UNIPROTKB|Q9KN92 | 251 | pstB2 "Phosphate import ATP-bi | 0.651 | 0.772 | 0.408 | 9.5e-34 | |
| TIGR_CMR|VC_A0073 | 251 | VC_A0073 "phosphate ABC transp | 0.651 | 0.772 | 0.408 | 9.5e-34 | |
| UNIPROTKB|Q9KU04 | 273 | pstB1 "Phosphate import ATP-bi | 0.667 | 0.728 | 0.406 | 1.2e-33 | |
| TIGR_CMR|VC_0726 | 273 | VC_0726 "phosphate ABC transpo | 0.667 | 0.728 | 0.406 | 1.2e-33 |
| TAIR|locus:2200226 ABCI17 "ATP-binding cassette I17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
Identities = 179/270 (66%), Positives = 214/270 (79%)
Query: 29 MPSTCSLFRD-EVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEI 87
MPS S D +REHL+ V +PK RV +L + +DDG+ ILKGV ++I
Sbjct: 1 MPSLWSNESDGSLREHLVDVVVSGS--------EPKIRVHDLTRVADDGSRILKGVTIDI 52
Query: 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIP 147
PKG+I+G+IGPSGSGKST LR+LNRLWEPP TVFLDG DIT++DV++LRR+VGMLFQ+P
Sbjct: 53 PKGMIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITNVDVIALRRRVGMLFQLP 112
Query: 148 ALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRVALAR 207
LF+GTV DN+RYGP LRG+KL++ EVYK KTG E+SVGQAQRVALAR
Sbjct: 113 VLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALAR 172
Query: 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267
TLANEPEVLLLDEPTSALDPIST+NIEDV+VKLKK+ G+T V+VSHSIKQIQ++AD+VCL
Sbjct: 173 TLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCL 232
Query: 268 LVNGEIVEVLKPDLLSEAKHPMALRFLQLS 297
+V+GEIVEVLKP LS A HPMA RFLQLS
Sbjct: 233 VVDGEIVEVLKPSELSHATHPMAQRFLQLS 262
|
|
| UNIPROTKB|Q0D9V6 STAR1 "Protein STAR1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 174/260 (66%), Positives = 205/260 (78%)
Query: 39 EVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIG 97
+VREHLL V G E E PK RVR L + S+ G IL+GV++++P+GV++G+IG
Sbjct: 88 DVREHLLDVDGVGE-EGAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIG 146
Query: 98 PSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDN 157
PSGSGKSTLLRALNRLWEP G V LDG DI +DVL+LRRKVGMLFQ+PA+F+GTV DN
Sbjct: 147 PSGSGKSTLLRALNRLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADN 206
Query: 158 IRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRVALARTLANEPEVLL 217
+RYGPQL+GKKLT+ EV +K E+SVGQAQRVALARTLAN+PEVLL
Sbjct: 207 VRYGPQLQGKKLTDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLL 266
Query: 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277
LDEPTSALDPISTQNIE+ +V+LKK G+T VMVSHS+KQIQRIAD+VCLLV GE+VEVL
Sbjct: 267 LDEPTSALDPISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVL 326
Query: 278 KPDLLSEAKHPMALRFLQLS 297
P LSEAKHPMA RFL+LS
Sbjct: 327 PPSELSEAKHPMARRFLELS 346
|
|
| TIGR_CMR|CHY_2116 CHY_2116 "phosphate ABC transporter, ATP-binding protein PstB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 94/233 (40%), Positives = 144/233 (61%)
Query: 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--PP--- 117
K +VR+L + LK ++++I K + +IGPSG GKST LR LNR+ + P
Sbjct: 6 KIKVRDLNLYYGN-FQALKNISLDIYKNEVTALIGPSGCGKSTFLRTLNRMNDLIPGVRI 64
Query: 118 SGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG----KKLTE 171
G++ DG DI + DV+ LR++VGM+FQ P F +V +N+ Y P++ G +KL E
Sbjct: 65 EGSILFDGVDIYKENFDVVELRKRVGMVFQSPNPFPKSVYENVAYAPKIHGLKDKRKLDE 124
Query: 172 --NEVYKXXXXXXXXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229
+ + +K +S GQ QR+ +AR LA EPEVLL+DEPTSALDPIS
Sbjct: 125 IVEKSLRGAALWDEVKDRLHKPATGLSGGQQQRLCIARALAIEPEVLLMDEPTSALDPIS 184
Query: 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
T IE+++ +LKKK+ TIV+V+H+++Q RI+D +NGE++E+ + +++
Sbjct: 185 TMRIEELIQELKKKY--TIVIVTHNMQQAARISDRTAFFLNGELIEMDRTEVI 235
|
|
| TIGR_CMR|DET_0141 DET_0141 "phosphate ABC transporter, ATP-binding protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 87/210 (41%), Positives = 132/210 (62%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDL 131
+LK +NM+ P I IIGPSG GKSTLLRALNR+ + SG V LD ++ +L
Sbjct: 19 VLKNINMDFPDRQITAIIGPSGCGKSTLLRALNRMNDLVSGARLEGEVLLDNENVYSPNL 78
Query: 132 DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE--NEVYKXXXXXXXX----X 185
DV++LR++VGM+FQ P F ++ DN+ +GP++ G NE+ +
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGITAQSRLNEIVEKSLHQAALWDEVK 138
Query: 186 XXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
+K+G +S GQ QR+ +AR LA EPEV+L+DEP SALDP+ST IE+++ +LK+ +
Sbjct: 139 DNLHKSGMALSGGQQQRLCIARVLAVEPEVILMDEPCSALDPVSTMRIEELMQELKQNY- 197
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TI +V+H+++Q R +D L+ G+++E
Sbjct: 198 -TIAIVTHNMQQAARASDWTGFLLTGDLIE 226
|
|
| TIGR_CMR|CPS_3640 CPS_3640 "phosphate ABC transporter, ATP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 86/209 (41%), Positives = 129/209 (61%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITD--LD 132
L + M IPKG + IGPSG GKSTLLR++NR+ + SG + L G +I D +D
Sbjct: 48 LNNITMSIPKGQVTAFIGPSGCGKSTLLRSINRMNDLVDNCHISGEINLHGSNIYDKHVD 107
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG----KKLTE--NEVYKXXXXXXXXXX 186
V LRRKVGM+FQ P F T+ +N+ YG ++ G ++L E + +
Sbjct: 108 VAELRRKVGMVFQRPNPFPKTIYENVVYGLRIMGENNRRRLDEAAEQSLRSAALWNEVKD 167
Query: 187 XXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
+++ +S GQ QR+ +AR +A +PEVLLLDEPTSALDPIST IE+++ LKK+
Sbjct: 168 RLHESALGLSGGQQQRLVIARAIAIQPEVLLLDEPTSALDPISTLTIEELINDLKKQ--F 225
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T+V+V+H+++Q R++D + G+++E
Sbjct: 226 TVVIVTHNMQQAARVSDQTAFMYMGDLIE 254
|
|
| UNIPROTKB|P30750 metN [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 83/224 (37%), Positives = 135/224 (60%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---DVLSL 136
L V++ +P G I G+IG SG+GKSTL+R +N L P G+V +DG+++T L ++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 137 RRKVGMLFQ-IPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGG-- 193
RR++GM+FQ L TV N+ +L ++EV + +K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL--DNTPKDEVKRRVTELLSLVGLGDKHDSYP 138
Query: 194 -EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S GQ QRVA+AR LA+ P+VLL DE TSALDP +T++I ++L + ++ G+TI++++
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198
Query: 253 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 295
H + ++RI D V ++ NGE++E ++ S K P+A +F+Q
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 242
|
|
| UNIPROTKB|Q9KN92 pstB2 "Phosphate import ATP-binding protein PstB 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 85/208 (40%), Positives = 130/208 (62%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDIT-DLDV 133
LK +N+ IP + +IGPSG GKSTLLR LNR+ + +G + +DG+D+ ++DV
Sbjct: 21 LKSINLPIPTRQVTALIGPSGCGKSTLLRCLNRMNDLIEGVTITGKLTMDGQDVYGNIDV 80
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKXXXXXXXXXXXXNK 190
LR +VGM+FQ P F ++ +N+ YG + +G KK + V + ++
Sbjct: 81 SDLRIRVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKHLDEVVERSLRGAALWDEVKDR 140
Query: 191 TGGE---ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
+S GQ QR+ +ART+A EP+V+L+DEPTSALDPI+T IE+++ LKK + T
Sbjct: 141 LKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEDLKKNY--T 198
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
IV+V+HS++Q +RI+D + GE+VE
Sbjct: 199 IVIVTHSMQQARRISDRTAFFLMGELVE 226
|
|
| TIGR_CMR|VC_A0073 VC_A0073 "phosphate ABC transporter, ATP-binding protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 85/208 (40%), Positives = 130/208 (62%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDIT-DLDV 133
LK +N+ IP + +IGPSG GKSTLLR LNR+ + +G + +DG+D+ ++DV
Sbjct: 21 LKSINLPIPTRQVTALIGPSGCGKSTLLRCLNRMNDLIEGVTITGKLTMDGQDVYGNIDV 80
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKXXXXXXXXXXXXNK 190
LR +VGM+FQ P F ++ +N+ YG + +G KK + V + ++
Sbjct: 81 SDLRIRVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKHLDEVVERSLRGAALWDEVKDR 140
Query: 191 TGGE---ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
+S GQ QR+ +ART+A EP+V+L+DEPTSALDPI+T IE+++ LKK + T
Sbjct: 141 LKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEDLKKNY--T 198
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
IV+V+HS++Q +RI+D + GE+VE
Sbjct: 199 IVIVTHSMQQARRISDRTAFFLMGELVE 226
|
|
| UNIPROTKB|Q9KU04 pstB1 "Phosphate import ATP-binding protein PstB 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 87/214 (40%), Positives = 130/214 (60%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDLD 132
L ++M IPKG + IGPSG GKSTLLR +NR+ + GT V L G++I D+D
Sbjct: 42 LSDISMRIPKGQVTAFIGPSGCGKSTLLRCINRMNDLVEGTRVEGEVKLHGKNIYHPDVD 101
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE------NEVYKXXXXXXXXXX 186
V +LRR+VGM+FQ P F ++ +N+ YG +L+G K + + +
Sbjct: 102 VPTLRRRVGMVFQRPNPFPKSIYENVVYGLRLQGIKNSRALDDAAEQSLRAAALWDEVKH 161
Query: 187 XXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
++ +S GQ QR+ +AR +A EPEVLLLDEPTSALDPIST IE+++ LK K+
Sbjct: 162 RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLTIEELIHDLKTKY-- 219
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
T+V+V+H+++Q R++D + G+++E D
Sbjct: 220 TVVIVTHNMQQAARVSDHTAFIHMGKLIEYADTD 253
|
|
| TIGR_CMR|VC_0726 VC_0726 "phosphate ABC transporter, ATP-binding protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 87/214 (40%), Positives = 130/214 (60%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDLD 132
L ++M IPKG + IGPSG GKSTLLR +NR+ + GT V L G++I D+D
Sbjct: 42 LSDISMRIPKGQVTAFIGPSGCGKSTLLRCINRMNDLVEGTRVEGEVKLHGKNIYHPDVD 101
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE------NEVYKXXXXXXXXXX 186
V +LRR+VGM+FQ P F ++ +N+ YG +L+G K + + +
Sbjct: 102 VPTLRRRVGMVFQRPNPFPKSIYENVVYGLRLQGIKNSRALDDAAEQSLRAAALWDEVKH 161
Query: 187 XXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
++ +S GQ QR+ +AR +A EPEVLLLDEPTSALDPIST IE+++ LK K+
Sbjct: 162 RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLTIEELIHDLKTKY-- 219
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
T+V+V+H+++Q R++D + G+++E D
Sbjct: 220 TVVIVTHNMQQAARVSDHTAFIHMGKLIEYADTD 253
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C9W0 | AB17I_ARATH | No assigned EC number | 0.7 | 0.8758 | 0.9923 | yes | no |
| O34756 | YJKB_BACSU | No assigned EC number | 0.3805 | 0.8120 | 0.968 | yes | no |
| Q0D9V6 | STAR1_ORYSJ | No assigned EC number | 0.6867 | 0.8825 | 0.7601 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | 0.766 |
| 3rd Layer | 3.6.3.27 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.XVIII.243.1 | hypothetical protein (246 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.164370001 | Bacterial phosphate transport system-like permease; Part of a binding-protein-dependent transpo [...] (277 aa) | • | • | 0.743 | ||||||
 | eugene3.00040892 | hypothetical protein (556 aa) | • | 0.485 | |||||||
 | gw1.70.18.1 | hypothetical protein (186 aa) | • | 0.482 | |||||||
 | gw1.VI.1378.1 | hypothetical protein (166 aa) | • | 0.480 | |||||||
 | eugene3.00010837 | hypothetical protein (344 aa) | • | 0.479 | |||||||
 | gw1.XIV.855.1 | hypothetical protein (292 aa) | • | 0.477 | |||||||
 | grail3.0018035601 | hypothetical protein (378 aa) | • | 0.477 | |||||||
 | grail3.0005026601 | hypothetical protein (446 aa) | • | 0.477 | |||||||
 | grail3.0015025801 | hypothetical protein (443 aa) | • | 0.474 | |||||||
 | gw1.16438.2.1 | Predicted protein (167 aa) | • | 0.473 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 298 | |||
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-99 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-77 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-73 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-70 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-68 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-64 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-63 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-62 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-61 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 9e-61 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-60 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-60 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-59 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-59 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-59 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-57 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-57 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-56 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-56 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-55 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-55 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 5e-55 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-55 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-55 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-55 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-54 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-54 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-53 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-53 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-53 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-53 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-52 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-52 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-52 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-52 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-52 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-52 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-52 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-51 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-50 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-50 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-50 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-49 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-49 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-49 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-49 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-49 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-49 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-49 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-49 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-49 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-48 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-48 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-48 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-48 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-48 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-48 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-47 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-47 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-47 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-47 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-47 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-47 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-47 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-47 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-46 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-46 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-46 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-46 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-46 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-46 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-46 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-46 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-46 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-46 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 9e-46 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-45 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-45 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-45 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-45 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-44 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-44 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-44 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-44 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-44 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-44 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-44 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-44 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-43 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-43 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-43 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-43 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-43 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 6e-43 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-43 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-43 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-41 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-41 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-41 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-41 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-40 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-40 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-40 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-40 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-40 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-40 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-40 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-39 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-39 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-39 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-39 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-39 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-39 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-38 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 7e-38 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-38 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 9e-38 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-37 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-37 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-37 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-37 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-37 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-37 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-37 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-37 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-37 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-37 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 8e-37 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 8e-37 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-37 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-36 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-36 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-36 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-36 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-36 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-36 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-36 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-36 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-36 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-36 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-36 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 7e-36 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-35 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-35 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-35 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-35 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-35 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-35 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-35 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-35 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-35 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-35 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-35 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-35 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-35 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 8e-35 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 9e-35 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-34 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-34 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-34 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-34 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-34 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-34 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-34 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 7e-34 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-33 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-33 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-33 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-33 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-33 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-33 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-33 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-33 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 9e-33 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-33 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-32 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-32 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-32 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-32 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-32 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 9e-32 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-31 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-31 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-31 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-31 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-31 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 7e-31 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 7e-31 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-31 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-30 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-30 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-30 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-30 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-30 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-30 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-30 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-30 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 8e-30 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-29 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-29 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-29 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-29 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-29 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-29 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-29 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 9e-29 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-28 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-28 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-28 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-28 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-28 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-28 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-28 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-28 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-28 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 9e-28 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-27 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-27 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-27 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 6e-27 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-27 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-26 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-26 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-26 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-26 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-26 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-26 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 9e-26 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-25 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-25 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-25 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-25 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-24 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-24 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-24 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-24 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 8e-24 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-23 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-23 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-23 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-23 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-23 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-23 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-22 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-22 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-22 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-22 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-22 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-22 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-22 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-22 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-22 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-22 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-22 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-22 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 9e-22 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-21 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-21 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-21 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-21 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-21 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-21 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 9e-21 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 9e-21 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-20 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-20 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-20 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 7e-20 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-19 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 2e-19 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-19 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-19 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-19 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-19 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-19 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-18 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-18 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-18 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 6e-18 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-18 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-18 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-18 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-17 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-17 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-17 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-17 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-16 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-16 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-16 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-16 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 5e-16 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-16 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-16 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-15 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-15 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-15 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-15 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-15 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 6e-15 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-15 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-15 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 8e-15 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-14 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-14 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-14 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-14 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-14 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 6e-14 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-14 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-13 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-13 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-13 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-13 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-13 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-13 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-12 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-12 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-12 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-11 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-11 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-11 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 9e-11 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-10 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 1e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-10 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-10 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-10 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 5e-10 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 5e-10 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 8e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-08 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-08 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-07 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 1e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 2e-06 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 2e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 7e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 7e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-04 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 1e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 1e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-04 | |
| pfam02456 | 370 | pfam02456, Adeno_IVa2, Adenovirus IVa2 protein | 3e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 3e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 5e-04 | |
| pfam13555 | 60 | pfam13555, AAA_29, P-loop containing region of AAA | 7e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.001 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.001 | |
| PRK05541 | 176 | PRK05541, PRK05541, adenylylsulfate kinase; Provis | 0.001 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.001 | |
| pfam13604 | 195 | pfam13604, AAA_30, AAA domain | 0.001 | |
| pfam13191 | 154 | pfam13191, AAA_16, AAA ATPase domain | 0.001 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.004 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.004 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.004 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 0.004 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.004 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 289 bits (741), Expect = 9e-99
Identities = 112/230 (48%), Positives = 147/230 (63%), Gaps = 14/230 (6%)
Query: 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPS 118
+R+L D LK ++++IPKG I +IGPSG GKSTLLR LNRL + P
Sbjct: 1 IELRDLNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 119 GTVFLDGRDITDLD--VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTEN---E 173
G V LDG+DI DLD VL LRR+VGM+FQ P F G++ DN+ YG +L G KL E
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 174 VYKLLSLADLDSSFLNKTGG-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 232
V + L A L ++ +S GQ QR+ LAR LANEPEVLLLDEPTSALDPIST
Sbjct: 120 VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 233 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
IE+++ +LKK+ TIV+V+H+++Q R+AD L+NG +VE + +
Sbjct: 180 IEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 2e-77
Identities = 104/206 (50%), Positives = 146/206 (70%), Gaps = 2/206 (0%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
S G ILK ++++ G I I+GPSG+GKSTL++ +NRL +P G++ +DG DI +D
Sbjct: 12 SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID 71
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
V+ LRRK+GM+FQ P LFEGTV DNI YGP L+G+K + E Y LS+ L+ + +
Sbjct: 72 VIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY--LSIVGLNKEYATRDV 129
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S G+AQRV++ARTLAN PEVLLLDEPTSALDP ST+ IE+++VKLK K +T++ ++
Sbjct: 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWIT 189
Query: 253 HSIKQIQRIADVVCLLVNGEIVEVLK 278
H+++Q +RI D L G +VE K
Sbjct: 190 HNMEQAKRIGDYTAFLNKGILVEYAK 215
|
Length = 241 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 2e-73
Identities = 103/228 (45%), Positives = 143/228 (62%), Gaps = 15/228 (6%)
Query: 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS- 118
+ P VR+L D LK +N++IPK + +IGPSG GKSTLLR LNR+ +
Sbjct: 4 KIPAIEVRDLNLYYGDKH-ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG 62
Query: 119 ----GTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTEN 172
G V LDG++I D +DV+ LRR+VGM+FQ P F ++ DN+ YG +L G K E
Sbjct: 63 ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKEL 122
Query: 173 E--VYKLL---SLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227
+ V L +L D L+K+ +S GQ QR+ +AR LA +PEVLL+DEPTSALDP
Sbjct: 123 DEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182
Query: 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
IST IE+++ +LKKK TIV+V+H+++Q R++D GE+VE
Sbjct: 183 ISTLKIEELITELKKK--YTIVIVTHNMQQAARVSDYTAFFYLGELVE 228
|
Length = 253 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 4e-70
Identities = 101/209 (48%), Positives = 138/209 (66%), Gaps = 15/209 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132
LK +N++IPK + +IGPSG GKSTLLR+LNR+ + G V DG+DI D +D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLL---SLADLDSS 186
V+ LRR+VGM+FQ P F ++ DNI YGP+L G KK + V + L +L D
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD 136
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+ + +S GQ QR+ +AR LA EPEVLLLDEPTSALDPI+T IE+++ +LKKK
Sbjct: 137 RLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK--Y 194
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TIV+V+H+++Q RI+D +GE+VE
Sbjct: 195 TIVIVTHNMQQAARISDRTAFFYDGELVE 223
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 5e-68
Identities = 97/227 (42%), Positives = 144/227 (63%), Gaps = 12/227 (5%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VL 134
L V++EIPKG I GIIG SG+GKSTLLR +N L P SG+VF+DG+D+T L +
Sbjct: 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79
Query: 135 SLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKT 191
LR+K+GM+FQ L TV +N+ + +L G K + V +LL L L S ++
Sbjct: 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGL-SDKADRY 138
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
++S GQ QRVA+AR LAN P++LL DE TSALDP +TQ+I ++L + ++ G+TIV++
Sbjct: 139 PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLI 198
Query: 252 SHSIKQIQRIADVVCLLVNGEIVE---VLKPDLLSEAKHPMALRFLQ 295
+H ++ ++RI D V +L G +VE V ++ + KH + F+
Sbjct: 199 THEMEVVKRICDRVAVLDQGRLVEEGTVS--EVFANPKHAITQEFIG 243
|
Length = 339 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 9e-64
Identities = 98/232 (42%), Positives = 144/232 (62%), Gaps = 11/232 (4%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
+R L K S G +LKGV++++ +G I+ IIGPSGSGKSTLLR + L P SG V +D
Sbjct: 2 ELRGLTK-SFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 125 GRDITDL---DVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKL--- 177
G DI+ L ++ LRR++GMLFQ ALF+ TV +N+ + P +L+E E+ ++
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF-PLREHTRLSEEEIREIVLE 119
Query: 178 -LSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236
L L + E+S G +RVALAR LA +PE+LL DEPT+ LDPI++ I+D+
Sbjct: 120 KLEAVGL-RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288
+ LKK+ G+T +MV+H + IAD + +L +G+IV P+ L + P
Sbjct: 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDP 230
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 6e-63
Identities = 92/223 (41%), Positives = 135/223 (60%), Gaps = 8/223 (3%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD-LDVLSLR 137
+LKG+++ + KG ++ IIGPSGSGKSTLLR LN L EP SG++ +DG D+ D D+L LR
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 138 RKVGMLFQIPALFEG-TVVDNIRYGP---QLRGKKLTENEVYKLLSLADLDSSFLNKTGG 193
RKVGM+FQ LF TV++N+ P + K + +LL L + +
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGL-ADKADAYPA 135
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
++S GQ QRVA+AR LA +P+V+L DEPTSALDP + DV+ L ++ GMT+++V+H
Sbjct: 136 QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTH 194
Query: 254 SIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFLQ 295
+ + +AD V + G+I+E P + K +FL
Sbjct: 195 EMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQFLS 237
|
Length = 240 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 1e-62
Identities = 100/216 (46%), Positives = 137/216 (63%), Gaps = 15/216 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLD 132
LK +N++I + + +IGPSG GKST LR LNR+ + G V LDG+DI +D+D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSS 186
V LR++VGM+FQ P F ++ DN+ YGP+ G KKL E + K +L D
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD 138
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L K+ +S GQ QR+ +AR LA EPEVLL+DEPTSALDPIST IE+++ +LKK +
Sbjct: 139 RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY-- 196
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
TIV+V+H+++Q RI+D +NGEIVE L
Sbjct: 197 TIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
|
Length = 250 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 9e-61
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 36/200 (18%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD--V 133
+L V++ I G I+ ++GPSGSGKSTLLR + L EP SG++ +DG D+TDL+ +
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDEL 71
Query: 134 LSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
LRR++GM+FQ ALF TV++NI G
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------- 100
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S GQ QRVALAR LA +P+VLLLDEPTSALDPI+ + + +L L+ + G+T+V+V+
Sbjct: 101 --LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVT 158
Query: 253 HSIKQIQRIADVVCLLVNGE 272
H + + R+AD V +L +G+
Sbjct: 159 HDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 9e-61
Identities = 89/205 (43%), Positives = 128/205 (62%), Gaps = 7/205 (3%)
Query: 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL 136
LK V++ +PKG I GIIG SG+GKSTL+R +N L P SG+V +DG D+T L L
Sbjct: 18 VTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKEL 77
Query: 137 ---RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENE--VYKLLSLADLDSSFLNK 190
RR++GM+FQ L TV +N+ ++ G E E V +LL L L +
Sbjct: 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-EDKADA 136
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
++S GQ QRV +AR LAN P+VLL DE TSALDP +TQ+I +L + ++ G+TIV+
Sbjct: 137 YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVL 196
Query: 251 VSHSIKQIQRIADVVCLLVNGEIVE 275
++H ++ ++RI D V ++ GE+VE
Sbjct: 197 ITHEMEVVKRICDRVAVMEKGEVVE 221
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 1e-60
Identities = 83/205 (40%), Positives = 123/205 (60%), Gaps = 6/205 (2%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
L +++ + G + ++GPSG GK+TLLR + L P SG + +DGRD+T +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 135 SLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLNKT 191
RR +GM+FQ ALF TV +NI +G +LRG E V +LL L L+ LN+
Sbjct: 71 --RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-LLNRY 127
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
E+S GQ QRVALAR LA EP +LLLDEP SALD + + + L +L+++ G+T + V
Sbjct: 128 PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV 187
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEV 276
+H ++ +AD + ++ G IV+V
Sbjct: 188 THDQEEALALADRIAVMNEGRIVQV 212
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 3e-60
Identities = 89/209 (42%), Positives = 133/209 (63%), Gaps = 4/209 (1%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
+ VN+ I +G + +IGPSGSGK+T L+ +NRL EP SG + +DG DI+DLD +
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVE 72
Query: 136 LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLD-SSFLNKT 191
LRRK+G + Q LF TV +NI P+L G K+ + +LL L LD S + ++
Sbjct: 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY 132
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
E+S GQ QRV +AR LA +P +LL+DEP ALDPI+ + +++ + +L+K+ G TIV V
Sbjct: 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV 192
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
+H I + ++AD + ++ GEIV+ PD
Sbjct: 193 THDIDEALKLADRIAVMDAGEIVQYDTPD 221
|
Length = 309 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-59
Identities = 92/241 (38%), Positives = 142/241 (58%), Gaps = 10/241 (4%)
Query: 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
P VR + K D IL GV++++P+G I+ I+G SGSGKSTLLR + L P G +
Sbjct: 7 PLIEVRGVTKSFGD-RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 122 FLDGRDITDL---DVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKL 177
+DG DI L ++ +R+++G+LFQ ALF TV +N+ + P KL E+ + +L
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF-PLREHTKLPESLIREL 124
Query: 178 ----LSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233
L L L + + E+S G +RVALAR +A +PE+L LDEPTS LDPIS I
Sbjct: 125 VLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184
Query: 234 EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRF 293
++++ +L G+T++MV+H + + IAD V +L +G+++ P+ L + P +F
Sbjct: 185 DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQF 244
Query: 294 L 294
Sbjct: 245 F 245
|
Length = 263 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 2e-59
Identities = 91/220 (41%), Positives = 134/220 (60%), Gaps = 4/220 (1%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
+ K G + +N+EI KG + +IGPSGSGK+T ++ +NRL EP SG +F+D
Sbjct: 2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFID 61
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRG--KKLTENEVYKLLSLA 181
G DI + D + LRRK+G + Q LF TV +NI P+L K+ +LL+L
Sbjct: 62 GEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALV 121
Query: 182 DLDS-SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
LD F ++ E+S GQ QRV +AR LA +P +LL+DEP ALDPI+ +++ +L
Sbjct: 122 GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
+++ G TIV V+H I + R+AD + ++ NGEIV+V PD
Sbjct: 182 QQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD 221
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 8e-59
Identities = 80/222 (36%), Positives = 134/222 (60%), Gaps = 5/222 (2%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125
VR L K+ L GV+ E+ G I G++GP+G+GK+TLL+ L L +P SG + + G
Sbjct: 7 VRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLG 66
Query: 126 RDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENE--VYKLLSLAD 182
D+ + +RR++G + Q P+L+ TV +N+ + +L G E E + +LL L
Sbjct: 67 YDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFG 125
Query: 183 LDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
L+ NK +S G QR+++A L ++PE+L+LDEPTS LDP S + I ++L +L K
Sbjct: 126 LED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK 184
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284
+ G+TI++ +H +++ + + D V +L +G+I+ P+ L E
Sbjct: 185 EGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-57
Identities = 94/225 (41%), Positives = 139/225 (61%), Gaps = 12/225 (5%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL--- 136
L V++ IP G I G+IG SG+GKSTL+R +N L P SG V +DG+D+T L L
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
Query: 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKTGG 193
RR++GM+FQ L TV DN+ +L G K + V +LL L L S ++
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGL-SDKADRYPA 139
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
++S GQ QRVA+AR LA+ P+VLL DE TSALDP +T++I ++L + ++ G+TIV+++H
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH 199
Query: 254 SIKQIQRIADVVCLLVNGEIVE---VLKPDLLSEAKHPMALRFLQ 295
+ ++RI D V ++ G +VE V ++ S KHP+ F+Q
Sbjct: 200 EMDVVKRICDRVAVIDAGRLVEQGTVS--EVFSHPKHPLTREFIQ 242
|
Length = 343 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 1e-57
Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 39/200 (19%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
P+LK V++ I G + I+GPSGSGKSTLL+ L RL++P SG + +DG D+ DLD
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD 70
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
+ SLR+ + + Q P LF GT+ +NI
Sbjct: 71 LESLRKNIAYVPQDPFLFSGTIRENI---------------------------------- 96
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S GQ QR+A+AR L +P +L+LDE TSALDP + I + L L K G T+++++
Sbjct: 97 --LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIA 152
Query: 253 HSIKQIQRIADVVCLLVNGE 272
H + I+ AD + +L +G
Sbjct: 153 HRLSTIRD-ADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 2e-56
Identities = 86/222 (38%), Positives = 121/222 (54%), Gaps = 18/222 (8%)
Query: 65 RVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
++ L K G LKGV++ I KG + I+GPSGSGKSTLL L L P SG V
Sbjct: 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV 61
Query: 122 FLDGRDITDLDVLSL----RRKVGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTENE 173
+DG DI+ L L RR +G +FQ +P L T ++N+ L G E
Sbjct: 62 RVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL---TALENVELPLLLAGVPKKERR 118
Query: 174 --VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
+LL L LN E+S GQ QRVA+AR LAN+P+++L DEPT LD + +
Sbjct: 119 ERAEELLERVGLGDR-LNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
+ ++L +L K+ G TIV+V+H ++ AD + L +G+I
Sbjct: 178 EVMELLRELNKEAGTTIVVVTHDP-ELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 3e-56
Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 6/203 (2%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
D P L +++ I KG + I+GP+GSGKSTLLR LN L P SG V +DG+D+T L +
Sbjct: 11 DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70
Query: 134 LSLRRKVGMLFQIPA--LFEGTVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLN 189
LRRKVG++FQ P F TV + + +G + G ++ E V + L L L+ +
Sbjct: 71 KELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRD 129
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
++ +S GQ QRVA+A LA +P++LLLDEPT+ LDP + + ++L KLK + G TI+
Sbjct: 130 RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTII 188
Query: 250 MVSHSIKQIQRIADVVCLLVNGE 272
+V+H + + +AD V +L +G+
Sbjct: 189 IVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 3e-55
Identities = 92/212 (43%), Positives = 133/212 (62%), Gaps = 19/212 (8%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132
L ++M IPK + IGPSG GKSTLLR NR+ + G + LDG++I D +D
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLLSLADL-----D 184
V LRR+VGM+FQ P F ++ +N+ YG +L+G +++ + V + L A L D
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD 160
Query: 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
N G +S GQ QR+ +AR +A EPEVLLLDEPTSALDPIST IE+++ +LK K+
Sbjct: 161 RLHENAFG--LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKY 218
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
TIV+V+H+++Q R++D + G++VE
Sbjct: 219 --TIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248
|
Length = 272 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 3e-55
Identities = 88/221 (39%), Positives = 129/221 (58%), Gaps = 12/221 (5%)
Query: 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
L LK V++EI KG + +IGP+GSGKSTLL+ LN L +P SG V
Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 122 FLDGRDITD-LDVLSLRRKVGMLFQIPA--LFEGTVVDNIRYGPQLRGKKLTE-----NE 173
+DG D + +L LR+KVG++FQ P LF TV D + +G + G E E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 174 VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233
+L+ L +L L++ +S GQ QRVA+A LA PE+LLLDEPT+ LDP + +
Sbjct: 122 ALELVGLEEL----LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 234 EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
++L KLK++ G TI++V+H ++ + AD V +L +G+I+
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL 218
|
Length = 235 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 5e-55
Identities = 90/211 (42%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--P---PSGTVFLDGRDI--TDLD 132
LK +N++I K + IGPSG GKSTLLR NR++E P G + LDG +I D
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENE----VYKLLSLADLDSSF- 187
+ LR KVGM+FQ P F ++ DNI +G +L +KL+ E V L+ A L +
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLF-EKLSRAEMDERVEWALTKAALWNEVK 147
Query: 188 --LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
L+++G +S GQ QR+ +AR +A PEVLLLDEP SALDPIST IE+++ +LK+ +
Sbjct: 148 DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDY- 206
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
T+V+V+H+++Q R +D + GE++E
Sbjct: 207 -TVVIVTHNMQQAARCSDYTAFMYLGELIEF 236
|
Length = 260 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 6e-55
Identities = 99/230 (43%), Positives = 140/230 (60%), Gaps = 16/230 (6%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--L 131
+K V M+I K I IIGPSG GK+TLLR++NR+ + G ++ G+DI D L
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 132 DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE------NEVYKLLSLADLDS 185
DV R+KVGM+FQ P F ++ DN+ +GP++ G K E K +L D
Sbjct: 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK 137
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
S LNK G +S GQ QR+ +AR LA EPEV+LLDEPTSALDPI+TQ IE +L +L + +
Sbjct: 138 SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENY- 196
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSEAKHPMALRFL 294
TIV+V+H+I Q RIAD + + GE++E +++ K+ + +L
Sbjct: 197 -TIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEEYL 245
|
Length = 250 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 7e-55
Identities = 82/206 (39%), Positives = 120/206 (58%), Gaps = 8/206 (3%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VL 134
LK VN+EI G + I+GPSGSGKSTLL L L +P SG V ++G+D+T L +
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78
Query: 135 SLRRK-VGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNK 190
LRRK +G +FQ L TV++N+ + G + +LL + L+ L K
Sbjct: 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK 138
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
E+S GQ QRVA+AR L N P+++L DEPT LD + + + ++L +L K+ G TI+M
Sbjct: 139 KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM 198
Query: 251 VSHSIKQIQRIADVVCLLVNGEIVEV 276
V+H ++ + AD V L +G+I E
Sbjct: 199 VTHD-PELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 7e-55
Identities = 98/226 (43%), Positives = 141/226 (62%), Gaps = 16/226 (7%)
Query: 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS---- 118
+ V L DD A ILK VN++IPK + +IGPSG GKST +R LNR+ +
Sbjct: 3 RIEVENLNTYFDD-AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 119 -GTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE---- 171
G ++LDG DI D +DV+ LR+KVGM+FQ P F ++ DN+ YG ++ G+ +
Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE 121
Query: 172 --NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229
E K +L D L+K+ +S GQ QR+ +ART+A PEV+L+DEP SALDPIS
Sbjct: 122 RVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIS 181
Query: 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T IED++ KLK+ + TIV+V+H+++Q R++ +NGEI+E
Sbjct: 182 TTKIEDLIHKLKEDY--TIVIVTHNMQQATRVSKYTSFFLNGEIIE 225
|
Length = 250 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 1e-54
Identities = 91/237 (38%), Positives = 132/237 (55%), Gaps = 14/237 (5%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
++ +RK S +LK VN++I G + ++GPSG GKSTLLR + L EP SG + +D
Sbjct: 5 ELKNVRK-SFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTEN-----EVYKLL 178
GRD+TDL +R + M+FQ AL+ TV +NI +G +LRG E EV KLL
Sbjct: 64 GRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL 121
Query: 179 SLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238
L L LN+ ++S GQ QRVALAR L +P+V LLDEP S LD + +
Sbjct: 122 GLEHL----LNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177
Query: 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 294
KL ++ G T + V+H + +AD + ++ +G I +V P +L + F+
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 3e-54
Identities = 88/201 (43%), Positives = 128/201 (63%), Gaps = 8/201 (3%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSL 136
+LKG+++ + KG ++ IIGPSGSGKSTLLR +N L EP SGT+ +DG +TD ++ L
Sbjct: 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74
Query: 137 RRKVGMLFQIPALFEG-TVVDNIRYGP-QLRG--KKLTENEVYKLLSLADLDSSFLNKTG 192
R+KVGM+FQ LF TV++NI P +++G K E +LL L + +
Sbjct: 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL-ADKADAYP 133
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
++S GQ QRVA+AR LA P+V+L DEPTSALDP + DV+ L ++ GMT+V+V+
Sbjct: 134 AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVT 192
Query: 253 HSIKQIQRIADVVCLLVNGEI 273
H + + +AD V + +G I
Sbjct: 193 HEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 2e-53
Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 12/226 (5%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
+ + K S G +L+ +N+ + KG + I+GPSG GKSTLLR + L +P SG
Sbjct: 1 MALLEIEGVSK-SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 121 VFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENE--VYKL 177
V LDGR +T +G +FQ AL TV+DN+ G +LRGK E +L
Sbjct: 60 VLLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKEL 114
Query: 178 LSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237
L L L + F +K ++S G QRVA+AR LA P++LLLDEP ALD ++ + ++D L
Sbjct: 115 LELVGL-AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL 173
Query: 238 VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDL 281
++L ++ T+++V+H + + +AD V +L N G I E L+ DL
Sbjct: 174 LRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDL 219
|
Length = 248 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 4e-53
Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 13/224 (5%)
Query: 65 RVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
V+ L G L V+ I KG +G++G SGSGKSTL RA+ L +P SG++
Sbjct: 3 EVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI 62
Query: 122 FLDGRDITDLD---VLSLRRKVGMLFQIP--AL-----FEGTVVDNIRYGPQLRGKKLTE 171
DG+D+ L R+++ M+FQ P +L + + +R +L K+ +
Sbjct: 63 IFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARK 122
Query: 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
V LL L LN+ E+S GQ QRVA+AR LA P++L+ DEPTSALD
Sbjct: 123 EAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQA 182
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
I D+L KL+++ G+T++ ++H + + +IAD V ++ G+IVE
Sbjct: 183 QILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 5e-53
Identities = 85/208 (40%), Positives = 127/208 (61%), Gaps = 8/208 (3%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL--- 136
+ ++ I KG I I+G SGSGKST +R LNRL EP +G +F+DG +I + L
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 137 -RRKVGMLFQIPALF-EGTVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKTG 192
R+K+GM+FQ ALF T++ N GP+L G ++ + + +LL L L+ + ++
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-YEHRYP 127
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
E+S G QRV LAR LA EP++LL+DE SALDP+ +++D L KL+ TIV ++
Sbjct: 128 DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187
Query: 253 HSIKQIQRIADVVCLLVNGEIVEVLKPD 280
H + + RI D + ++ GEIV+V PD
Sbjct: 188 HDLDEAIRIGDRIVIMKAGEIVQVGTPD 215
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (439), Expect = 6e-53
Identities = 86/210 (40%), Positives = 134/210 (63%), Gaps = 15/210 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--PPS---GTVFLDGRDITD--LD 132
L +++E + + +IGPSG GKST LR LNR+ + P + G + LDG +I D +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLL---SLADLDSS 186
V+ LRR+VGM+FQ P F ++ +N+ YG ++ G K V + L +L D
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD 141
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+++ +S GQ QR+ +AR LA EPEVLL+DEP SALDPI+TQ IE+++ +LK ++
Sbjct: 142 RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARY-- 199
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
TI++V+H+++Q R++DV G+++EV
Sbjct: 200 TIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229
|
Length = 253 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 1e-52
Identities = 84/235 (35%), Positives = 137/235 (58%), Gaps = 23/235 (9%)
Query: 65 RVRELRKESDDGAPILKG---------VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE 115
+ +L + ILK V++++ +G I I+G SGSGKSTLLR +NRL E
Sbjct: 16 KAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE 75
Query: 116 PPSGTVFLDGRDITDL---DVLSLRRK-VGMLFQIPALF-EGTVVDNIRYGPQLRGKKLT 170
P SG V +DG+DI + ++ LRRK + M+FQ AL TV++N+ +G +++G
Sbjct: 76 PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRA 135
Query: 171 EN-----EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225
E E +L+ L + +K E+S G QRV LAR LA +P++LL+DE SAL
Sbjct: 136 EREERAAEALELVGLEG----WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSAL 191
Query: 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
DP+ + ++D L++L+ + TIV ++H + + R+ D + ++ +G +V+V P+
Sbjct: 192 DPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPE 246
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 1e-52
Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 14/225 (6%)
Query: 65 RVRELRK--ESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
VR + K GA L+ +++ + +G + ++GPSG GKSTLLR + L P SG V
Sbjct: 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV 61
Query: 122 FLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRG--KKLTENEVYKLL 178
+DG +T G +FQ AL TV+DN+ G +L+G K +LL
Sbjct: 62 LVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELL 116
Query: 179 SLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238
L L S F N ++S G QRVALAR LA +P+VLLLDEP SALD ++ + +++ L+
Sbjct: 117 ELVGL-SGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELL 175
Query: 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLL--VNGEIVEVLKPDL 281
+ ++ G T+++V+H I + +AD V +L G IV ++ DL
Sbjct: 176 DIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVDL 220
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 171 bits (437), Expect = 1e-52
Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 17/238 (7%)
Query: 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123
V L K +G LK V++ I G + +IGPSG+GKSTLLR LN L EP SG+V +
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 124 DGRDITDL---DVLSLRRKVGMLFQIPALFEG-TVVDNIRYG-----PQLRG--KKLTEN 172
DG DI L + LRR++GM+FQ L E +V++N+ G R +
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 173 EVYKLLSLADLD----SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 228
E K +LA L+ + ++S GQ QRVA+AR L +P+++L DEP ++LDP
Sbjct: 121 E--KQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPA 178
Query: 229 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
S++ + D+L ++ ++ G+T+++ H + + AD + L +G IV P L++
Sbjct: 179 SSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEV 236
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 3e-52
Identities = 88/223 (39%), Positives = 124/223 (55%), Gaps = 14/223 (6%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
G PIL ++ IPKG I GI+GP+GSGKSTLL+ L L +P SG V LDG+DI L
Sbjct: 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72
Query: 135 SLRRKVGMLFQIPALFEG-TVVDNI---RYGPQLRGKKLTEN---EVYKLLSLADLDSSF 187
L +K+ + Q P+ G TV + + RY + ++ V + L L L+
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH-L 131
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
++ E+S G+ QRV +AR LA E +LLLDEPTS LD + ++L L ++ G+T
Sbjct: 132 ADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLT 191
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSE 284
+VMV H + R AD + LL +G+IV EVL + L E
Sbjct: 192 VVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLRE 234
|
Length = 258 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 3e-52
Identities = 83/238 (34%), Positives = 129/238 (54%), Gaps = 17/238 (7%)
Query: 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123
V+ L K G LK VN+EI +G ++ IIGPSG+GKSTLLR+LN L +P SG +
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 124 DGRDITDL---DVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLS 179
+G IT L ++ LRR +GM+FQ L +V++N+ G G T ++ L S
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG--RLGYTSTWRSLFGLFS 121
Query: 180 LADLDSSF--LNKTG---------GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 228
D + L + G +S GQ QRVA+AR L +P+++L DEP ++LDP
Sbjct: 122 KEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181
Query: 229 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
S + + D+L + ++ G+T+++ H + ++ AD + L G IV L++
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEA 239
|
Length = 258 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 4e-52
Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 11/219 (5%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SL 136
L V++EI +G +GI+G SGSGKSTL R L L +P SG++ LDG+ + +
Sbjct: 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80
Query: 137 RRKVGMLFQIPALFEG------TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK 190
R V M+FQ P TV + + G ++ + +LL L SFL++
Sbjct: 81 YRPVQMVFQDP---YSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR 137
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
E+S GQ QR+A+AR L EP++L+LDEPTSALD I ++L++LKK+ G+T +
Sbjct: 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLF 197
Query: 251 VSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSEAKHP 288
+SH + ++ + D + ++ NG+IVE+ +LLS HP
Sbjct: 198 ISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 6e-52
Identities = 101/246 (41%), Positives = 145/246 (58%), Gaps = 17/246 (6%)
Query: 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PP 117
K +R+L+ +L GVN+EIP I ++GPSGSGKSTLLR NRL E
Sbjct: 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61
Query: 118 SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQL----RGKKLTEN 172
SG V+LDG+DI +DV+ LRR+V M+FQIP ++ +N+ G +L + KK +
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE 121
Query: 173 EVYKLLSLADLDSSF---LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229
V L A L L+ G++S GQ QR+ +AR LA +PEVLL DEPT+ LDP +
Sbjct: 122 RVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPEN 181
Query: 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHP 288
T IE + ++LKK MTIV+V+H +Q RI+D V L G+IVE ++ + +H
Sbjct: 182 TAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHE 239
Query: 289 MALRFL 294
+ +++
Sbjct: 240 LTEKYV 245
|
Length = 250 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-51
Identities = 82/211 (38%), Positives = 127/211 (60%), Gaps = 14/211 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR-- 137
+ ++++ +G I I+G SGSGKSTL+R LNRL EP G + +DG+DI L LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 138 --RKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTEN-----EVYKLLSLADLDSSFLN 189
+K+ M+FQ AL TV++N+ +G +++G E E +L+ L + N
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
E+S G QRV LAR LAN+P++LL+DE SALDP+ ++D L++L+ K TIV
Sbjct: 164 ----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIV 219
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
++H + + RI D + ++ +GEIV+V P+
Sbjct: 220 FITHDLDEALRIGDRIAIMKDGEIVQVGTPE 250
|
Length = 386 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-50
Identities = 82/212 (38%), Positives = 128/212 (60%), Gaps = 11/212 (5%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
PILKG+++ IP G + ++G SG GKST++ L R ++P SG + LDG DI DL++ LR
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK------- 190
++G++ Q P LF+GT+ +NIRYG + E K ++ D S +
Sbjct: 77 SQIGLVSQEPVLFDGTIAENIRYG-KPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE 135
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
G ++S GQ QR+A+AR L P++LLLDE TSALD S + +++ L + K G T ++
Sbjct: 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIV 193
Query: 251 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
++H + I+ AD++ +L NG++VE D L
Sbjct: 194 IAHRLSTIRN-ADLIAVLQNGQVVEQGTHDEL 224
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-50
Identities = 91/216 (42%), Positives = 140/216 (64%), Gaps = 15/216 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLD 132
L +N+ I + I +IGPSG GKST LR LNR+ + G V LDG++I D+D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSS 186
V+ LR++VGM+FQ P F ++ DN+ YGP++ G K+L + K +L D
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD 139
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L K+ ++S GQ QR+ +ART+A +P+V+L+DEPTSALDPIST IED++V+LKK++
Sbjct: 140 DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEY-- 197
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
TIV+V+H+++Q R++D + G+++E K + +
Sbjct: 198 TIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 7e-50
Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 17/249 (6%)
Query: 38 DEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIG 97
+ + E L P + D + + P+LK ++ I G + I+G
Sbjct: 303 ERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVG 362
Query: 98 PSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDN 157
PSGSGKSTL++ L RL++P SG + +DG DI D+ + SLR+++G++ Q P LF GT+ +N
Sbjct: 363 PSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422
Query: 158 IRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALAR 207
I G T+ E+ + L LA+ + + + G +S GQ QR+A+AR
Sbjct: 423 IALG----RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478
Query: 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267
L P +L+LDE TSALD + I+D L KL K G T ++++H + I+ AD + +
Sbjct: 479 ALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLSTIKN-ADRIIV 535
Query: 268 LVNGEIVEV 276
L NG IVE
Sbjct: 536 LDNGRIVER 544
|
Length = 567 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 1e-49
Identities = 87/214 (40%), Positives = 128/214 (59%), Gaps = 15/214 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPS----GTVFLDGRDITD--LD 132
LK +N++I + + IIGPSG GKST ++ LNR+ E PS G + ++I D
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLLSLA---DLDSS 186
V LR VGM+FQ P F ++ DN+ YGP++ G KK + V K L A D
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKD 159
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+ +S GQ QR+ +AR LA EP+V+L+DEPTSALDPIST +E+++ +LKK +
Sbjct: 160 RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDY-- 217
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
+I++V+H+++Q RI+D +NG + E D
Sbjct: 218 SIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251
|
Length = 271 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 1e-49
Identities = 93/208 (44%), Positives = 133/208 (63%), Gaps = 14/208 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLD 132
LK V+M+IPK + +IGPSG GKST +R LNR+ + G V ++G DI D+D
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG--KKLTENEVYKLL---SLADLDSSF 187
V+ LR+ VGM+FQ P F ++ DN+ YGP++ G KK + V L +L D S
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDR 147
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
L +S GQ QR+ +ARTLA +P+++L DEPTSALDPIST IED+++ LKK + T
Sbjct: 148 LKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDY--T 205
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
IV+V+H+++Q RI+D + GE++E
Sbjct: 206 IVIVTHNMQQAARISDYTGFFLMGELIE 233
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-49
Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 14/225 (6%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
R+ ++K L ++++I G ++ ++GPSG+GKSTLLR + L P +G + L+
Sbjct: 4 RINNVKKRFGA-FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 125 GRDITDLDVLSLR-RKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTEN-------EVY 175
GR + D+ L++R RKVG +FQ ALF TV DNI +G ++R ++ +E E+
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELL 122
Query: 176 KLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235
+L+ L L + ++S GQ QRVALAR LA EP+VLLLDEP ALD + +
Sbjct: 123 RLVQLEGLADRYPA----QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 178
Query: 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
L KL + G+T V V+H ++ +AD V +L G I +V PD
Sbjct: 179 WLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPD 223
|
Length = 345 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 3e-49
Identities = 91/208 (43%), Positives = 134/208 (64%), Gaps = 14/208 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI-TDLDV 133
LK +N+ IP + +IGPSG GKSTLLR LNR+ + +G + +DG DI ++DV
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSF 187
LR KVGM+FQ P F ++ +N+ YG + +G KK+ + V + L +L D
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDR 138
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
L +S GQ QR+ +ART+A EP+V+L+DEPTSALDPI+T IE+++ +LKK + T
Sbjct: 139 LKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNY--T 196
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
IV+V+HS++Q +RI+D + GE+VE
Sbjct: 197 IVIVTHSMQQARRISDRTAFFLMGELVE 224
|
Length = 249 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-49
Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 8/222 (3%)
Query: 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS 118
+ KP +R + K D + ++++I KG + ++GPSG GK+TLLR + +P S
Sbjct: 1 MPKPALEIRNVSKSFGDF-TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 119 GTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTEN---EV 174
G + LDG DITD+ +R +GM+FQ ALF TV +N+ +G ++R K V
Sbjct: 60 GEILLDGEDITDVPP--EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 175 YKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234
+ L L L+ F ++ ++S GQ QRVALAR L EP+VLLLDEP SALD + +
Sbjct: 118 EEALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176
Query: 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
L +L+++ G+T V V+H ++ ++D + ++ +G I +V
Sbjct: 177 KELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQV 218
|
Length = 352 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 3e-49
Identities = 85/209 (40%), Positives = 131/209 (62%), Gaps = 15/209 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-----GTVFLDGRDITD--LD 132
L + + IPK + +IGPSG GKSTLLR NR+ + G + +G +I D D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLL---SLADLDSS 186
V++LRRK+GM+FQ P F ++ +N+ YGP++ G KK + V K L +L D
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD 141
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+ + +S GQ QR+ +ARTLA PEV+L+DEP SALDPI+T IED++ LKK++
Sbjct: 142 RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEY-- 199
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T+++V+H+++Q R++D + G+++E
Sbjct: 200 TVIIVTHNMQQAARVSDYTGFMYLGKLIE 228
|
Length = 253 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 4e-49
Identities = 85/211 (40%), Positives = 128/211 (60%), Gaps = 16/211 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LD 132
L V+++IP+ + IGPSG GKST LR LNR+ + +G + LDG DI D LD
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQL----RGKKLTENEVYKLLSLADLDSSF- 187
V+ LR +VGM+FQ P F ++ +N+ YGP++ R K + V L A L
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 188 --LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
L++ G +S GQ QR+ +AR +A PEV+L+DEP SALDPI+T +E+++ +L++ +
Sbjct: 155 DRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNY- 213
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
TIV+V+HS++Q R++ G +VEV
Sbjct: 214 -TIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243
|
Length = 267 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 5e-49
Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 51/208 (24%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
+ L L V++ + G I+ ++GP+GSGKSTLLRA+ L +P SG + +D
Sbjct: 1 EIENLSFRYGGR-TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD 184
G+DI L + LRR++G + Q+
Sbjct: 60 GKDIAKLPLEELRRRIGYVPQL-------------------------------------- 81
Query: 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
S GQ QRVALAR L P++LLLDEPTS LDP S + + ++L +L ++
Sbjct: 82 -----------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE- 129
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGE 272
G T+++V+H + + AD V +L +G+
Sbjct: 130 GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 8e-49
Identities = 74/201 (36%), Positives = 113/201 (56%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
A IL +++ + G + I GPSG GKSTLL+ + L P SGT+ +G D++ L +
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEI 195
R++V Q PALF TV DN+ + Q+R ++ LL+ L S L K E+
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITEL 134
Query: 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255
S G+ QR+AL R L P++LLLDE TSALD + +NIE+++ + ++ + ++ ++H
Sbjct: 135 SGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194
Query: 256 KQIQRIADVVCLLVNGEIVEV 276
Q R AD V L G E+
Sbjct: 195 DQAIRHADKVITLQPGHAGEM 215
|
Length = 223 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 1e-48
Identities = 69/210 (32%), Positives = 115/210 (54%), Gaps = 39/210 (18%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
VR L K L +++ + KG I G++GP+G+GK+TL++ + L +P SG + +
Sbjct: 2 EVRNLSKRYGKK-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADL 183
G+DI + ++R++G L + P+L+E TV +N++
Sbjct: 61 GKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLKL----------------------- 96
Query: 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
S G QR+ALA+ L ++PE+L+LDEPTS LDP S + ++L +LKK+
Sbjct: 97 ------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE 144
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
G TI++ SH +++ +R+ D V +L NG I
Sbjct: 145 -GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-48
Identities = 78/209 (37%), Positives = 125/209 (59%), Gaps = 15/209 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL-----WEPPSGTVFLDGRDIT--DLD 132
+KG++M+ K I +IGPSGSGKST LR+LNR+ +G + G DI +++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSS 186
V +R+ +GM+FQ P F ++ +NI + + G K L E K +L D
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD 155
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+K+ +S GQ QR+ +AR +A +P++LL+DEP SALDPIST +E+ + +LKK +
Sbjct: 156 DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNY-- 213
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TI++V+H+++Q R +D G+++E
Sbjct: 214 TIIIVTHNMQQAARASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 3e-48
Identities = 81/212 (38%), Positives = 122/212 (57%), Gaps = 17/212 (8%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
D G P+LK V+ IP G + I+GPSGSGKST+LR L R ++ SG++ +DG+DI ++ +
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL 70
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN---- 189
SLRR +G++ Q LF T+ NIRYG T+ EV + A + +
Sbjct: 71 DSLRRAIGVVPQDTVLFNDTIGYNIRYG----RPDATDEEVIEAAKAAQIHDKIMRFPDG 126
Query: 190 ------KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
+ G ++S G+ QRVA+AR + P +LLLDE TSALD + + I+ L + K
Sbjct: 127 YDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK- 185
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
G T ++++H + I AD + +L +G IVE
Sbjct: 186 -GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVE 215
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 3e-48
Identities = 88/213 (41%), Positives = 132/213 (61%), Gaps = 17/213 (7%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDL 131
++KGV+++IP+ + ++GPSG GKSTLLR NRL E G V L GR+I D+
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 132 DVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEV-------YKLLSLADL 183
D + +RR+VGM+FQ P F T+ DN+ G +L G ++ E+ K +L D
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE 138
Query: 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
LN +S GQ QR+ +AR LA +P++LL+DEPT+ +DP+ T IE++L +LKK+
Sbjct: 139 VKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE 198
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
+ TIV+V+HS Q R++D V L G+++EV
Sbjct: 199 Y--TIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229
|
Length = 253 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 4e-48
Identities = 96/211 (45%), Positives = 132/211 (62%), Gaps = 19/211 (9%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI----TD 130
+K VN +I + IIGPSG GKST LRA+NR+ + +G + DG DI TD
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 131 LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLL---SLADLD 184
+VL LR+K+GM+FQ P F ++ DNI YGP+L G KK E V K L +L D
Sbjct: 115 -EVL-LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV 172
Query: 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
S L+K +S GQ QR+ +ARTLA EPE+LLLDEPTSALDP +T IED++ +L+ +
Sbjct: 173 SDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY 232
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TI++V+H+++Q R++D G +VE
Sbjct: 233 --TIMIVTHNMQQASRVSDYTMFFYEGVLVE 261
|
Length = 286 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 5e-48
Identities = 83/204 (40%), Positives = 133/204 (65%), Gaps = 11/204 (5%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSLR 137
L VN+EI G +G+IG +GSGKSTL++ LN L +P SG + +DG DITD + + +R
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 138 RKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENE----VYKLLSLADLD-SSFLNK 190
+KVG++FQ P LFE T+ +I +GP G L+E E V + +++ LD + +K
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLG--LSEEEIENRVKRAMNIVGLDYEDYKDK 140
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
+ E+S GQ +RVA+A +A EP++L+LDEPT+ LDP I + + +L K++ MTI++
Sbjct: 141 SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIIL 200
Query: 251 VSHSIKQIQRIADVVCLLVNGEIV 274
VSHS++ + ++AD + ++ G+
Sbjct: 201 VSHSMEDVAKLADRIIVMNKGKCE 224
|
Length = 287 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 1e-47
Identities = 80/219 (36%), Positives = 128/219 (58%), Gaps = 7/219 (3%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
+ + K L GV+++I +G ++GPSG GK+TLLR + P SG + LD
Sbjct: 2 ELENVSKFYGGF-VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLA 181
G+DIT+L +R V +FQ ALF TV +NI +G +L+ K + V + L L
Sbjct: 61 GKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV 118
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
L+ + N+ ++S GQ QRVA+AR L NEP+VLLLDEP ALD ++++ L +L+
Sbjct: 119 QLEG-YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
K+ G+T V V+H ++ ++D + ++ G+I ++ P+
Sbjct: 178 KELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPE 216
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-47
Identities = 84/264 (31%), Positives = 128/264 (48%), Gaps = 18/264 (6%)
Query: 42 EHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGS 101
E + PG E + + + L DG P L +N+ I G + ++G SG+
Sbjct: 299 ESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGA 358
Query: 102 GKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYG 161
GKSTLL L P G + ++G D+ DL + R+++ + Q P LF GT+ +NI
Sbjct: 359 GKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENIL-- 416
Query: 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGG----------EISVGQAQRVALARTLAN 211
L ++ E+ L A L F+ K G +S GQAQR+ALAR L +
Sbjct: 417 --LARPDASDEEIIAALDQAGL-LEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473
Query: 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271
+LLLDEPT+ LD + Q I L +L K T+++++H ++ AD + +L NG
Sbjct: 474 PASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNG 530
Query: 272 EIVEVLKPDLLSEAKHPMALRFLQ 295
+VE + LSE + A Q
Sbjct: 531 RLVEQGTHEELSEKQGLYANLLKQ 554
|
Length = 559 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 2e-47
Identities = 86/225 (38%), Positives = 135/225 (60%), Gaps = 17/225 (7%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
V L K +G LK +N+ I G + IIGPSG+GKSTLLR +NRL EP SG++ L+
Sbjct: 3 EVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLE 62
Query: 125 GRDITDL---DVLSLRRKVGMLFQIPALFEG-TVVDNIRYG-----PQLRG--KKLTENE 173
G DIT L + LRR++GM+FQ L E TV++N+ +G P R + +E +
Sbjct: 63 GTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED 122
Query: 174 VYKLLSLADLD----SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229
K +L+ L+ + + ++S GQ QRVA+AR LA +P+++L DEP ++LDP +
Sbjct: 123 --KERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT 180
Query: 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
++ + D L ++ K+ G+T+++ H + ++ AD + L GEIV
Sbjct: 181 SKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 3e-47
Identities = 92/210 (43%), Positives = 138/210 (65%), Gaps = 15/210 (7%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDL 131
+LK +NM+ P+ I IIGPSG GKSTLLRALNR+ + SG V LD +I +L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 132 DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG----KKLTE--NEVYKLLSLADLDS 185
DV++LR++VGM+FQ P F ++ DN+ +GP++ G +L E + + +L D
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
L+K+G +S GQ QR+ +AR LA EPEV+L+DEP SALDP+ST IE+++ +LK+ +
Sbjct: 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNY- 197
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TI +V+H+++Q R +D L+ G++VE
Sbjct: 198 -TIAIVTHNMQQAARASDWTGFLLTGDLVE 226
|
Length = 251 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 3e-47
Identities = 75/220 (34%), Positives = 122/220 (55%), Gaps = 11/220 (5%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
D+ P+LK +N I G + I+GP+G+GK+TL+ L R ++P G + +DG DI D+
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF------ 187
SLR +G++ Q LF GT+++NIR G + E K D
Sbjct: 73 KSLRSMIGVVLQDTFLFSGTIMENIRLG-RPNATDEEVIEAAKEAGAHDFIMKLPNGYDT 131
Query: 188 -LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L + GG +S G+ Q +A+AR + +P++L+LDE TS +D + + I++ L KL K G
Sbjct: 132 VLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GR 189
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
T ++++H + I+ AD + +L +G+I+E D L K
Sbjct: 190 TSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 3e-47
Identities = 94/216 (43%), Positives = 133/216 (61%), Gaps = 15/216 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLD 132
L +N++I K I +IGPSG GKST LR LNR+ + G V +G++I + D
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSS 186
+L LRRK+GM+FQ P F ++ DNI YGP++ G KKL E + K +L +
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
LN +S GQ QR+ +ARTLA EP V+L+DEPTSALDPIST IE++++ LK+ +
Sbjct: 143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY-- 200
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
TI++V+H+++Q RI+D +NG I E D L
Sbjct: 201 TIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 4e-47
Identities = 80/210 (38%), Positives = 130/210 (61%), Gaps = 15/210 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLD 132
L V+++ I +IGPSGSGKSTLLR++NR+ + +G++ +G +I D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLL---SLADLDSS 186
+ LR+++GM+FQ P F ++ +N+ YG +L+G K++ + V K L S+ D
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+ + +S GQ QRV +AR LA P+++LLDEPTSALDPIS IE+ L+ LK +
Sbjct: 141 RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY-- 198
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
T+++V+ S++Q RI+D ++G+++E
Sbjct: 199 TMLLVTRSMQQASRISDRTGFFLDGDLIEY 228
|
Length = 252 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 5e-47
Identities = 73/200 (36%), Positives = 102/200 (51%), Gaps = 32/200 (16%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
G +L +++ I G I+GI+GP+G+GKSTLL+ L L +P SG + LDG+D+ L
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE 194
L RK+ + Q L L L ++ E
Sbjct: 70 ELARKIAYVPQA-------------------------------LELLGLA-HLADRPFNE 97
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
+S G+ QRV LAR LA EP +LLLDEPTS LD + ++L +L ++ G T+VMV H
Sbjct: 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157
Query: 255 IKQIQRIADVVCLLVNGEIV 274
+ R AD V LL +G IV
Sbjct: 158 LNLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 1e-46
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 19/244 (7%)
Query: 65 RVRELRKE--SDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---- 117
V L E +D G P ++ V+ E+ G I+GI+G SGSGKSTL AL L
Sbjct: 7 EVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRIT 66
Query: 118 SGTVFLDGRDITDLDVLSLR----RKVGMLFQIP-ALFEG--TVVDNIRYGPQLRG---K 167
SG V LDGRD+ L +R +++ M+FQ P T+ D IR +L G +
Sbjct: 67 SGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR 126
Query: 168 KLTENEVYKLLSLADLDSSFLNKT-GGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226
+LL L ++S G QRV +A LA +P++L+ DEPT+ALD
Sbjct: 127 AEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALD 186
Query: 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEA 285
+ I D+L L+++ GM ++ ++H + + +AD V ++ GEIVE ++LS
Sbjct: 187 VTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNP 246
Query: 286 KHPM 289
+HP
Sbjct: 247 QHPY 250
|
Length = 539 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-46
Identities = 84/203 (41%), Positives = 123/203 (60%), Gaps = 8/203 (3%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT----DLDVLS 135
L VN+ IP G + IIG +GSGKSTLL+ LN L +P SGTV + R IT + +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 136 LRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENE--VYKLLSLADLDSSFLNKT 191
LR+KVG++FQ P LFE TV +I +GP G + + +++ L L L ++
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS 142
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
E+S GQ +RVA+A LA EPEVL+LDEPT+ LDP + + ++ KL K+ G+T V+V
Sbjct: 143 PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV 202
Query: 252 SHSIKQIQRIADVVCLLVNGEIV 274
+HS++ R AD + ++ G +
Sbjct: 203 THSMEDAARYADQIVVMHKGTVF 225
|
Length = 290 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 2e-46
Identities = 88/277 (31%), Positives = 137/277 (49%), Gaps = 21/277 (7%)
Query: 39 EVREHLLTVPGEAEAEDDNQIQKPKFRVRELRK--------ESDDGAPI--LKGVNMEIP 88
L +P VR L K + + + V+ ++
Sbjct: 256 AAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLR 315
Query: 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD--ITDLDVLSLRRKVGMLFQI 146
+G +G++G SGSGKSTL R L L P SG++ DG+D +T ++ LRR++ M+FQ
Sbjct: 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQD 375
Query: 147 P--ALF-EGTVVDNI----RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ 199
P +L TV D + R G + V +LL L L FL++ E+S GQ
Sbjct: 376 PYSSLNPRMTVGDILAEPLRIHGGGSGAERRAR-VAELLELVGLPPEFLDRYPHELSGGQ 434
Query: 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259
QRVA+AR LA EP++L+LDEP SALD + ++L L+++ G+T + +SH + ++
Sbjct: 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVR 494
Query: 260 RIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 295
IAD V ++ +G IVE + +HP + L
Sbjct: 495 YIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531
|
Length = 539 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-46
Identities = 85/209 (40%), Positives = 132/209 (63%), Gaps = 15/209 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLD 132
LKG++++ + I +IGPSG GKST LR LNR+ + +G V L G++I + D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLLSLA---DLDSS 186
V+ LR++VGM+FQ P F ++ +N+ YG +L G K + + V L A D
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+++ +S GQ QRV +AR LA +P+V+LLDEPTSALDPIS+ IE++L++L+ ++
Sbjct: 141 HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY-- 198
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TI++V+HS+ Q RI+D + G ++E
Sbjct: 199 TIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 2e-46
Identities = 80/195 (41%), Positives = 126/195 (64%), Gaps = 13/195 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPS----GTVFLDGRDI--TDLD 132
+K V ++IPK I IGPSG GKST+LR NRL + P G V G+++ D+D
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEV----YKLLSLADLDSSFL 188
+ +RR++GM+FQ P F ++ DNI YG ++ G K +E+ + +L D L
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKL 145
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++G +S GQ QR+ +AR +A +PEV+L+DEP SALDPIST IE+++ +LK+++ TI
Sbjct: 146 KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY--TI 203
Query: 249 VMVSHSIKQIQRIAD 263
++V+H+++Q R++D
Sbjct: 204 IIVTHNMQQAARVSD 218
|
Length = 264 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 3e-46
Identities = 91/227 (40%), Positives = 143/227 (62%), Gaps = 16/227 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---DVLSL 136
L V++ +P G I G+IG SG+GKSTL+R +N L P SG+V +DG+D+T L ++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 137 RRKVGMLFQ-IPALFEGTVVDNIRYGPQLRG--KKLTENEVYKLLSLADL----DSSFLN 189
RR++GM+FQ L TV N+ +L K + +V +LL+L L DS N
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSN 140
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+GG Q QRVA+AR LA+ P+VLL DE TSALDP +TQ+I ++L ++ ++ G+TI+
Sbjct: 141 LSGG-----QKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTIL 195
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 295
+++H + ++RI D V ++ NGE++E ++ S K P+A +F++
Sbjct: 196 LITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIR 242
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 3e-46
Identities = 86/215 (40%), Positives = 128/215 (59%), Gaps = 16/215 (7%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI- 128
IL +N++I K + IGPSG GKST LR NR+ + G + +DG D+
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75
Query: 129 -TDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG-----KKLTE--NEVYKLLSL 180
D +V+ LR KVGM+FQ P F ++ DN+ YGP+L G KKL E + + L
Sbjct: 76 SVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGL 135
Query: 181 ADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
+ L + E+S GQ QR+ +AR +A +P +LL+DEP SALDP++T IE+++ +L
Sbjct: 136 WEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL 195
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
KK TI++V+HS+KQ ++++D V +G IVE
Sbjct: 196 KKN--FTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228
|
Length = 251 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 4e-46
Identities = 92/228 (40%), Positives = 138/228 (60%), Gaps = 30/228 (13%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-----GTVFLDGRDI 128
DD A LKGV+M+IP+ + +IGPSG GKST LR LNR+ + G+V LDG+DI
Sbjct: 57 DDHA--LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114
Query: 129 TD--LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ------------LRGKKLTENE- 173
++++ LR++VGM+FQ P F ++ +NI YGP+ L G+ + E
Sbjct: 115 YQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174
Query: 174 --VYKLLSLADLDSSFLNKTGGE---ISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 228
V + L A L ++ +S GQ QR+ +AR LA +PEV+L+DEP SALDPI
Sbjct: 175 ELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
Query: 229 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD-VVCLLVNGEIVE 275
+T IED++ +L +++ T+V+V+H+++Q RI+D L GE+VE
Sbjct: 235 ATSKIEDLIEELAEEY--TVVVVTHNMQQAARISDQTAVFLTGGELVE 280
|
Length = 305 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 4e-46
Identities = 91/207 (43%), Positives = 132/207 (63%), Gaps = 14/207 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR---LWEPPS--GTVFLDGRDITD--LD 132
+K V +IP+G + +IGPSG GKST+LR+LNR L E S G V DG D+ D +D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENE-VYKLLSLA---DLDSSFL 188
+ +RR++GM+FQ P F ++ +NI +G ++ G +E V + L A D L
Sbjct: 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKL 148
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
N++G +S GQ QR+ +ART+A EPEV+L+DEP SALDPIST IE+ + +LKK TI
Sbjct: 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNF--TI 206
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVE 275
V+V+H+++Q R++D+ N E VE
Sbjct: 207 VIVTHNMQQAVRVSDMTAFF-NAEEVE 232
|
Length = 269 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 4e-46
Identities = 88/219 (40%), Positives = 131/219 (59%), Gaps = 7/219 (3%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L VN+E+P G ++ ++GPSGSGKSTLLR + L +P SG + L+G+D T + RK
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRK 73
Query: 140 VGMLFQIPALFEG-TVVDNIRYGPQLR--GKKLTENEVYKLLSLADLDSSFLNKTGGEIS 196
+G +FQ ALF+ TV DNI +G ++R K + V +LL L L ++ ++S
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL-EGLGDRYPNQLS 132
Query: 197 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
GQ QRVALAR LA EP+VLLLDEP ALD + + L KL + +T V V+H +
Sbjct: 133 GGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192
Query: 257 QIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294
+ +AD + ++ NG+I ++ PD + + +P + FL
Sbjct: 193 EAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFL 231
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 9e-46
Identities = 77/212 (36%), Positives = 124/212 (58%), Gaps = 17/212 (8%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
DG P+L+ ++++IP G + ++GPSGSGKSTL+ + R ++ SG + +DG D+ D +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTL 71
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS-------- 185
SLRR++G++ Q LF TV +NI YG G T EV + A+
Sbjct: 72 ASLRRQIGLVSQDVFLFNDTVAENIAYG--RPGA--TREEVEEAARAANAHEFIMELPEG 127
Query: 186 --SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
+ + + G ++S GQ QR+A+AR L +P +L+LDE TSALD S + ++ L +L K
Sbjct: 128 YDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK- 186
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T +++H + I+ AD + +L +G+IVE
Sbjct: 187 -NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVE 216
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 2e-45
Identities = 82/211 (38%), Positives = 127/211 (60%), Gaps = 17/211 (8%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
D P+L+ +++EIP G + I+G SGSGKSTLL+ L L++P G + LDG D+ D+D+
Sbjct: 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLA 543
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD---------- 184
SLRR+VG + Q P LF G++ +NI G T+ E+ + LA
Sbjct: 544 SLRRQVGYVLQDPFLFSGSIRENIALGNPE----ATDEEIIEAAQLAGAHEFIENLPMGY 599
Query: 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
+ + + G +S GQ QR+ALAR L ++P++LLLDE TSALDP + I L+++
Sbjct: 600 DTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI--LQ 657
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
G T+++++H + I+ AD + +L G+IVE
Sbjct: 658 GRTVIIIAHRLSTIRS-ADRIIVLDQGKIVE 687
|
Length = 709 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-45
Identities = 80/208 (38%), Positives = 132/208 (63%), Gaps = 14/208 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDLDV- 133
L V+M+IP+ + +IGPSG GKST LR +NR+ + G + G+++ D DV
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 134 -LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEV----YKLLSLADLDSSFL 188
++LRR++GM+FQ P F ++ DN+ YG +++G +E + +L D L
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQL 174
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
+ +G ++S GQ QR+ +AR +A +PEV+L+DEP SALDP++T IED++ +L +++ T+
Sbjct: 175 DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY--TV 232
Query: 249 VMVSHSIKQIQRIAD-VVCLLVNGEIVE 275
V+V+H+++Q RI+D L GE+VE
Sbjct: 233 VIVTHNMQQAARISDKTAVFLTGGELVE 260
|
Length = 285 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 2e-45
Identities = 94/226 (41%), Positives = 137/226 (60%), Gaps = 18/226 (7%)
Query: 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE------PP 117
F + L +D A ILK + ++IP I GI+GPSGSGKSTLL+ LNRL E
Sbjct: 11 FNISRLYLYINDKA-ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKV 69
Query: 118 SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG-------KKL 169
G V G+DI +D + LR++VGM+FQ P F ++ DNI Y + G KK+
Sbjct: 70 DGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI 129
Query: 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229
E + K+ ++ LN ++S GQ QR+ +AR LA +P+VLL+DEPTS +D ++
Sbjct: 130 VEECLRKVGLWKEVYDR-LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVN 188
Query: 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+Q IE ++ +LK + + IV+VSH+ +Q+ R+AD V L NGE+VE
Sbjct: 189 SQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVE 232
|
Length = 257 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 7e-45
Identities = 75/245 (30%), Positives = 120/245 (48%), Gaps = 22/245 (8%)
Query: 66 VRELR---KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP----- 117
V+ L + GV+ E+ KG I+GI+G SGSGKS L +A+ L P
Sbjct: 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIV 63
Query: 118 SGTVFLDGRDITDLDVLSLR----RKVGMLFQIP--AL-----FEGTVVDNIRYGPQLRG 166
G + DG+D+ L LR +++ M+FQ P +L + + +R +
Sbjct: 64 GGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLS 123
Query: 167 KKLTENEVYKLLSLADLDSSF--LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224
KK + +LL L + L E+S G QRV +A LA P++L+ DEPT+A
Sbjct: 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183
Query: 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLS 283
LD I D+L +L+++ G +++++H + + IAD V ++ G IVE ++
Sbjct: 184 LDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
Query: 284 EAKHP 288
KHP
Sbjct: 244 NPKHP 248
|
Length = 316 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (384), Expect = 1e-44
Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 15/209 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLD 132
L G++++ + + +IGPSG GKST LR LNR+ + +G + +G++I + +D
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLLSLADL---DSS 186
++ LR++VGM+FQ P F +V DN+ YG ++ G K+L + V + L A +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L++ S GQ QR+ +AR LA P+V+LLDEPTSALDPIS+ IE+ L++L KH
Sbjct: 140 NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL--KHQY 197
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T +MV+H+++Q RI+D L+NG+++E
Sbjct: 198 TFIMVTHNLQQAGRISDQTAFLMNGDLIE 226
|
Length = 251 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (384), Expect = 1e-44
Identities = 87/210 (41%), Positives = 135/210 (64%), Gaps = 16/210 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPS----GTVFLDGRDITD--LD 132
+K V+M+ P+ + IIGPSG GKST+LR++NR+ + PS G + LD DI D +D
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 133 VLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEV----YKLLSLADLDS 185
+S+RR+VGM+FQ P F ++ DN+ G +L G + +E+ K ++L D
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
L E+S GQ QR+ +ART+A +PEV+L+DEP SALDPIST IE+++ +LK+K+
Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKY- 198
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TI++V+H+++Q R++D G++VE
Sbjct: 199 -TIIIVTHNMQQAARVSDYTAFFYMGDLVE 227
|
Length = 252 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-44
Identities = 87/195 (44%), Positives = 125/195 (64%), Gaps = 16/195 (8%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--PPS---GTVFLDGRDI--TDLDVLS 135
VN+ I + IGPSG GKST+LR LNR+ E P + G V LDG D+ +D ++
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 136 LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG---KKLTENEVYKLLSLADLDSSF---L 188
+RR +GM+FQ P F ++ DN+ G +L G KK + V K L A+L + L
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRL 142
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
+K GG +S GQ QR+ +AR +A EP+VLL+DEP SALDPIST IED++ +LK+ + TI
Sbjct: 143 DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDY--TI 200
Query: 249 VMVSHSIKQIQRIAD 263
V+V+H+++Q R++D
Sbjct: 201 VIVTHNMQQAARVSD 215
|
Length = 258 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-44
Identities = 90/231 (38%), Positives = 130/231 (56%), Gaps = 13/231 (5%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
VR + K D L V+++IP G ++ ++GPSGSGK+TLLR + L P SGT+
Sbjct: 4 EVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENE------VYKL 177
G D TD+ V R VG +FQ ALF TV DN+ +G +++ + E V++L
Sbjct: 63 GEDATDVPV--QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHEL 120
Query: 178 LSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237
L L LD ++ ++S GQ QRVALAR LA EP+VLLLDEP ALD + + L
Sbjct: 121 LKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 179
Query: 238 VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288
+L + +T V V+H ++ +AD V ++ G I +V PD + + HP
Sbjct: 180 RRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD--HP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 2e-44
Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 35/211 (16%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+ GV+ I +G +G++G SG GKSTL R + L EP SG + +G+DIT L
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------ 81
Query: 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVG 198
K+ V +LL L FL + E+S G
Sbjct: 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGG 113
Query: 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258
Q QR+ +AR LA P++++ DEP SALD I ++L L+++ G+T + +SH + +
Sbjct: 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVV 173
Query: 259 QRIADVVCLLVNGEIVEVLKPD-LLSEAKHP 288
+ I+D + ++ G+IVE+ + + S HP
Sbjct: 174 RYISDRIAVMYLGKIVEIGPTEEVFSNPLHP 204
|
Length = 268 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 2e-44
Identities = 67/203 (33%), Positives = 112/203 (55%), Gaps = 3/203 (1%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
L+GV++E+ +G I+ ++G +G+GK+TLL+ + L P SG + DG DIT L
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 136 L-RRKVGMLFQIPALF-EGTVVDNIRYGP-QLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
R + + + +F TV +N+ G R K+ E ++ ++ L N+
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRA 134
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
G +S G+ Q +A+AR L + P++LLLDEP+ L P + I + + +L+K+ GMTI++V
Sbjct: 135 GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVE 194
Query: 253 HSIKQIQRIADVVCLLVNGEIVE 275
+ + IAD +L NG IV
Sbjct: 195 QNARFALEIADRGYVLENGRIVL 217
|
Length = 237 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (387), Expect = 2e-44
Identities = 97/260 (37%), Positives = 147/260 (56%), Gaps = 31/260 (11%)
Query: 45 LTVPGEAEAEDDNQIQKPKFRVRELRKESDDG----------------APILKGVNMEIP 88
L +P + +AE + K K +V L+++ + +L +N++I
Sbjct: 47 LKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIK 106
Query: 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDLDVLSLRRKVG 141
+ + IGPSG GKST LR LN+L + GT ++ G + + L LR ++G
Sbjct: 107 RNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIG 166
Query: 142 MLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLL---SLADLDSSFLNKTGGEI 195
M+FQ P FE ++ DN+ YGP+ G +K+ E V K L +L D L+K G +
Sbjct: 167 MVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNAL 226
Query: 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255
S GQ QR+ +AR +A EPEVLL+DEPTSALDPI+T IE+++++LKKK+ +I++V+HS+
Sbjct: 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKY--SIIIVTHSM 284
Query: 256 KQIQRIADVVCLLVNGEIVE 275
Q QRI+D G I E
Sbjct: 285 AQAQRISDETVFFYQGWIEE 304
|
Length = 329 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-44
Identities = 84/210 (40%), Positives = 132/210 (62%), Gaps = 15/210 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDI--TDLD 132
LK +N+ IP+ + IIGPSG GKST ++ LN + + +G + +G +I +D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG----KKLTE--NEVYKLLSLADLDSS 186
++ LR+ +GM+FQ F ++ DN+ YGP++ G KKL E + K ++L D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+ +S GQ QR+ +AR LA P+VLL+DEPTSALDP+ST+ IE++++KLK+K+
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKY-- 205
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
TIV+V+H+++Q R++D GE+VE
Sbjct: 206 TIVIVTHNMQQAARVSDQTAFFYMGELVEC 235
|
Length = 259 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 1e-43
Identities = 85/209 (40%), Positives = 127/209 (60%), Gaps = 15/209 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--PPS---GTVFLDGRDITD--LD 132
LKG++MEI + ++ IGPSG GKST LR NR+ + P + G + +DGR+I D +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE------NEVYKLLSLADLDSS 186
V LR+ VGM+FQ P F ++ +N+ YG ++ G K E K +L D
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L ++ +S GQ QR+ +AR +A P VLL+DEP SALDPIST +E+++ +LKK +
Sbjct: 139 KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDY-- 196
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TIV+V+H+++Q R++D GE+VE
Sbjct: 197 TIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 147 bits (375), Expect = 1e-43
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 11/215 (5%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
+ IL GV++ +P+G I+ ++G +G+GK+TLL+ + L P SG++ DGRDIT L
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 136 -LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK---KLTENEVYKLLS-LADLDSSFLN 189
R +G + + +F TV +N+ G R + K VY+L L +
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE----RRK 127
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+ G +S G+ Q +A+AR L + P++LLLDEP+ L P + I + + +L+ + G+TI+
Sbjct: 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTIL 186
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284
+V + + IAD +L G +V L
Sbjct: 187 LVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-43
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 16/209 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRR 138
L V+ + G I G+IGP+G+GK+TL ++ P SG+V DG DIT L R
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLT------------ENEVYKLLSLADLDS 185
+G FQIP LF TV++N+ Q R +LL L
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA- 134
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
++ GE+S GQ +R+ +AR LA +P++LLLDEP + L+P T+ + +++ +L ++ G
Sbjct: 135 DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERG 193
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
+T+++V H + + +AD V +L G ++
Sbjct: 194 ITVLLVEHDMDVVMSLADRVTVLDQGRVI 222
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (376), Expect = 1e-43
Identities = 86/210 (40%), Positives = 127/210 (60%), Gaps = 16/210 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITD--LD 132
+K VN+++ +G + +IGPSG GK+T LRA+NR+ + +G + LDG+DI +D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 133 VLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG----KKLTENEVYKL--LSLADLDS 185
+++RR+VGM+FQ P F +V DN+ G +L G L E L +L D
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
L +S GQ QR+ +AR LA EPE+LL+DEPTSALDP ST IED++ LKK
Sbjct: 140 DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV-- 197
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TI++V+H++ Q R++D + G++VE
Sbjct: 198 TTIIIVTHNMHQAARVSDTTSFFLVGDLVE 227
|
Length = 252 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 5e-43
Identities = 79/203 (38%), Positives = 128/203 (63%), Gaps = 12/203 (5%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS---GTVFLDGRDITDLDVLSLRRK 139
+NM+I + I +IG SG GKST LR NR+ + + G V ++G+D+ + DV++LR+
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENE-------VYKLLSLADLDSSFLNKTG 192
VGM+FQ P +F ++ +NI Y P+L G ++E + + L + L +
Sbjct: 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNA 140
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S GQ QR+ +AR LA +P++LLLDEPTSALDPIS+ IE++L +L H ++++MV+
Sbjct: 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL--SHNLSMIMVT 198
Query: 253 HSIKQIQRIADVVCLLVNGEIVE 275
H+++Q +R+AD GE++E
Sbjct: 199 HNMQQGKRVADYTAFFHLGELIE 221
|
Length = 246 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 6e-43
Identities = 79/209 (37%), Positives = 129/209 (61%), Gaps = 15/209 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL-----WEPPSGTVFLDGRDITD--LD 132
+ ++M+I K + +IGPSG GKST LR++NR+ G + +G +I D ++
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNI----RYGPQLRGKKLTE--NEVYKLLSLADLDSS 186
V++LRR++GM+FQ P F ++ +NI +Y + R L E E +L D
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD 156
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L+ + +S GQ QR+ +ARTLA +P VLLLDEP SALDPIS IE+++ +LK+++
Sbjct: 157 RLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEY-- 214
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+I++V+H+++Q R++D +NG++VE
Sbjct: 215 SIIIVTHNMQQALRVSDRTAFFLNGDLVE 243
|
Length = 268 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 7e-43
Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 23/240 (9%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
P+L+ +++ + KG I +IGP+G+GKSTLL+A+ L +P SG + + G+ +
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK- 73
Query: 135 SLRRKVGML---FQIPALFEGTVVDNIRYGPQLRGKKL------TENEVYKLLSLADLDS 185
R ++G + + F TV D + G + + +V + L +
Sbjct: 74 --RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGM-E 130
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
++ GE+S GQ QRV LAR LA P++LLLDEP + +D + I D+L +L+++ G
Sbjct: 131 DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G 189
Query: 246 MTIVMVSHSIKQIQRIAD-VVCLLVNGEIV------EVLKPDLLSEAKHPMALRFLQLSG 298
T++MV+H + + D V+CL N ++ EVL + L +A L
Sbjct: 190 KTVLMVTHDLGLVMAYFDRVICL--NRHLIASGPPEEVLTEENLEKAFGGSLAHALAGYR 247
|
Length = 254 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 7e-43
Identities = 85/223 (38%), Positives = 128/223 (57%), Gaps = 11/223 (4%)
Query: 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
P + +RK LK +++ + KG + ++GPSG GK+TLLR + L +GT+
Sbjct: 3 PYLSIDNIRKRFGAFT-ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI 61
Query: 122 FLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENE----VYK 176
+ GRDIT L +R G++FQ ALF TV DNI YG L+ + + E V +
Sbjct: 62 YQGGRDITRLP--PQKRDYGIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAE 117
Query: 177 LLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236
LL L L S K G++S GQ QRVALAR LA P +LLLDEP SALD +++
Sbjct: 118 LLDLVGLPGS-ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE 176
Query: 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
+ +L+++ G+T +MV+H ++ +AD + ++ +G I +V P
Sbjct: 177 IRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTP 219
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 2e-41
Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 18/230 (7%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
P VR L K G + V++E+ G I+G+IGP+G+GK+TL + ++P SGT
Sbjct: 2 TPLLEVRGLSK-RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGT 60
Query: 121 VFLDGRDITDLDVLSL-RRKVGMLFQIPALFEG-TVVDNIRYGPQLRG------------ 166
V GRDIT L + R + FQI LF G TV++N+ G R
Sbjct: 61 VIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRAR 120
Query: 167 KKLTE--NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224
K+ E +LL L ++ G +S GQ +R+ +AR LA +P++LLLDEP +
Sbjct: 121 KEEREARERARELLEFVGLGE-LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAG 179
Query: 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
L+P T+ + +++ +L+ + G+TI+++ H +K + +AD + +L GE++
Sbjct: 180 LNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229
|
Length = 250 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 3e-41
Identities = 82/210 (39%), Positives = 122/210 (58%), Gaps = 9/210 (4%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT----DLDV 133
L VN+ I G IG +GSGKST+++ LN L P G+V +D IT + D+
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80
Query: 134 LSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLN 189
+R+KVG++FQ P LFE TV+ ++ +GPQ G ++ E + L+L + S
Sbjct: 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE 140
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
K E+S GQ +RVA+A LA EP++L+LDEPT+ LDP + + + KL + GMTIV
Sbjct: 141 KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIV 199
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
+V+H + + AD V +L G++V KP
Sbjct: 200 LVTHLMDDVANYADFVYVLEKGKLVLSGKP 229
|
Length = 280 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-41
Identities = 74/208 (35%), Positives = 116/208 (55%), Gaps = 12/208 (5%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
L +N++I G + ++GPSG GK+T LR + L EP SG +++ GRD+TDL
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-- 68
Query: 135 SLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFL 188
R + M+FQ AL+ TV DNI +G +LR E EV +LL + L L
Sbjct: 69 PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL----L 124
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ ++S GQ QRVAL R + EP+V L+DEP S LD + L +L+++ G T
Sbjct: 125 DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTT 184
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVEV 276
+ V+H + +AD + ++ +G+I ++
Sbjct: 185 IYVTHDQVEAMTMADRIAVMNDGQIQQI 212
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 7e-41
Identities = 66/201 (32%), Positives = 92/201 (45%), Gaps = 38/201 (18%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
P+L+ V+ I G + IIGPSGSGKSTL R + L P SG V LDG DI+ D
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
L VG L Q LF G++ +NI
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENI---------------------------------- 96
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S GQ QR+ LAR L P +L+LDEP S LD + + + LK G T ++++
Sbjct: 97 --LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVIA 153
Query: 253 HSIKQIQRIADVVCLLVNGEI 273
H + + AD + +L +G +
Sbjct: 154 HRPETLAS-ADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (358), Expect = 1e-40
Identities = 94/239 (39%), Positives = 137/239 (57%), Gaps = 20/239 (8%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-----TVFLDGRDITD 130
G +L V+M P + ++GP+GSGK+T LR LNR+ + SG V L GR I +
Sbjct: 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92
Query: 131 L-DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS---- 185
DVL RR+VGMLFQ P F +++DN+ G +R KL + ++ ++ A L
Sbjct: 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG--VRAHKLVPRKEFRGVAQARLTEVGLW 150
Query: 186 ----SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
L+ + +S GQ Q + LARTLA PEVLLLDEPTSALDP +T+ IE+ + L
Sbjct: 151 DAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEAKHPMALRFLQ-LSG 298
+ +T+++V+H++ Q RI+D L +G +VE + L S KH R++ LSG
Sbjct: 211 DR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLSG 267
|
Length = 276 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-40
Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
P + P L+ V+ +P G + ++GPSG+GKSTLL L +P G++
Sbjct: 320 PSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 122 FLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLA 181
++G + D D S R ++ + Q P LF GT+ +NIR L ++ E+ + L A
Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIR----LARPDASDAEIREALERA 435
Query: 182 DLDS----------SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
LD + + + G +S GQAQR+ALAR + +LLLDEPT+ LD +
Sbjct: 436 GLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268
+ + L L + G T+++V+H + AD + +L
Sbjct: 496 EVLEALRALAQ--GRTVLLVTHRLALAAL-ADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 4e-40
Identities = 71/209 (33%), Positives = 119/209 (56%), Gaps = 17/209 (8%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
G P+L+ V+ E+ G + I+GP+G+GKSTLL+A+ L +P SG++ + G+ +
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK---- 65
Query: 135 SLRRKVGML---FQIPALFEGTVVD------NIRYGPQLRGKKLTENEVYKLLSLADLDS 185
R+++G + I F +V D G R K + +V + L L S
Sbjct: 66 -ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGL-S 123
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
++ GE+S GQ QRV LAR L +P++LLLDEP + +DP + ++I ++L +L+++ G
Sbjct: 124 ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-G 182
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
MTI++V+H + + D V LL+N +V
Sbjct: 183 MTILVVTHDLGLVLEYFDRV-LLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 6e-40
Identities = 84/215 (39%), Positives = 111/215 (51%), Gaps = 7/215 (3%)
Query: 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143
++ +P G I+ I+GPSG+GKSTLL + P SG + ++G D T R V ML
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP--PAERPVSML 76
Query: 144 FQIPALFEG-TVVDNIRYG--PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQA 200
FQ LF TV NI G P L+ +V + L FL + GE+S GQ
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAG-FLKRLPGELSGGQR 135
Query: 201 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260
QRVALAR L E +LLLDEP SALDP + ++ +L + MT++MV+H + R
Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR 195
Query: 261 IADVVCLLVNGEIVEVLK-PDLLSEAKHPMALRFL 294
IAD V L NG I +LLS AL +
Sbjct: 196 IADRVVFLDNGRIAAQGSTQELLSGKASAAALLGI 230
|
Length = 231 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 6e-40
Identities = 80/216 (37%), Positives = 128/216 (59%), Gaps = 10/216 (4%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125
R+L+ DG LKG+N + KG ++ ++GP+G+GKSTL N + +P SG V + G
Sbjct: 4 TRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKG 63
Query: 126 RDIT--DLDVLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENEVYKLL--S 179
I +L +R+ VG++FQ P LF TV +++ +GP G L++ EV K + +
Sbjct: 64 EPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG--LSKEEVEKRVKEA 121
Query: 180 LADLD-SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238
L + F NK +S GQ +RVA+A LA +PE+++LDEPTS LDP+ I +L
Sbjct: 122 LKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLY 181
Query: 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
L K+ G+TI++ +H + + AD V ++ +G+I+
Sbjct: 182 DLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKII 216
|
Length = 275 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 7e-40
Identities = 66/193 (34%), Positives = 101/193 (52%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
A IL ++ + G I GPSG GKSTLL+ + L P SGT+ +G DI+ L
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE 194
R++V Q P LF TV DN+ + Q+R ++ L L + L K E
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAE 137
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
+S G+ QR++L R L P+VLLLDE TSALD + N+ +++ + ++ + ++ V+H
Sbjct: 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
Query: 255 IKQIQRIADVVCL 267
+I V+ L
Sbjct: 198 KDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 9e-40
Identities = 82/207 (39%), Positives = 126/207 (60%), Gaps = 14/207 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132
L V+++IP I+ IGPSG GKSTLLR NR+ + G + R+I D ++
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEV--YKLLSLADLDS--SFL 188
+ LRR+VGM+FQ P F ++ +NI + P+ G K +E+ L A + L
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKL 155
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
+ G +S GQ QR+ +AR +A +P+VLL+DEP SALDPIST+ +E++ ++LK+++ TI
Sbjct: 156 KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY--TI 213
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVE 275
+MV+H+++Q R+AD N EI E
Sbjct: 214 IMVTHNMQQASRVADWTAFF-NTEIDE 239
|
Length = 274 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-39
Identities = 85/225 (37%), Positives = 133/225 (59%), Gaps = 9/225 (4%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLS 135
+L +++ I +G ++ IIGPSGSGKSTLLR +N+L E SG + +DG + D +D
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 136 LRRKVGMLFQIPALF-EGTVVDNIRYGP-QLRG--KKLTENEVYKLLSLADLDSSFLNKT 191
+R++ GM+FQ LF T ++N+ +GP ++RG K+ E + +LL+ L + +
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-AERAHHY 133
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
E+S GQ QRVA+AR LA +P+++L DEPTSALDP + V+ L ++ GMT+V+V
Sbjct: 134 PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIV 192
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEAKHPMALRFLQ 295
+H I +++A + + G I E P L+ FLQ
Sbjct: 193 THEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQ 237
|
Length = 240 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 2e-39
Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 21/223 (9%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
+V EL DG LKG+N+ I KG + I+G +G+GKSTL + LN + +P SG + D
Sbjct: 7 KVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFD 66
Query: 125 GR--DITDLDVLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSL 180
G+ D + ++ LR VGM+FQ P LF +V ++ +G KL E+EV K +
Sbjct: 67 GKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAV--NLKLPEDEVRKRVDN 124
Query: 181 ADLDSSFLNKTGGE---------ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
A L +TG E +S GQ +RVA+A L EP+VL+LDEPT+ LDP+
Sbjct: 125 A------LKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
I +LV+++K+ G+TI++ +H I + D V ++ G ++
Sbjct: 179 EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221
|
Length = 283 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 3e-39
Identities = 81/192 (42%), Positives = 120/192 (62%), Gaps = 13/192 (6%)
Query: 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSL 136
++ I K I G IGPSG GKST+LR+LNR+ + G V G+D+ +D + +
Sbjct: 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87
Query: 137 RRKVGMLFQIPALFEGTVVDNIRYGPQL-RGKKLTENEVYKLL---SLADLDSSFLNKTG 192
RR +GM+FQ P F ++ DN+ +G +L R K + V L +L D L +G
Sbjct: 88 RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSG 147
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S GQ QR+ +AR +A EPEVLLLDEP SALDPI+T+ +E+++V+LKK + TI +V+
Sbjct: 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDY--TIALVT 205
Query: 253 HSIKQIQRIADV 264
H+++Q R+AD
Sbjct: 206 HNMQQAIRVADT 217
|
Length = 261 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 4e-39
Identities = 63/199 (31%), Positives = 111/199 (55%), Gaps = 9/199 (4%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
L ++ + KG I G++GP+G+GK+T +R + + P SG V DG+ + R
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA----RN 70
Query: 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLNKTGGEI 195
++G L + L+ V+D + Y QL+G K E + + L +L S + NK E+
Sbjct: 71 RIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL-SEYANKRVEEL 129
Query: 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255
S G Q+V + ++PE+L+LDEP S LDP++ + ++DV+ +L + G T+++ +H +
Sbjct: 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQM 188
Query: 256 KQIQRIADVVCLLVNGEIV 274
+ ++ + D V LL G V
Sbjct: 189 ELVEELCDRVLLLNKGRAV 207
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 6e-39
Identities = 87/207 (42%), Positives = 123/207 (59%), Gaps = 6/207 (2%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR-- 137
+K ++ I +G I I+G SGSGKST++R LNRL EP G V +DG DI + LR
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 138 --RKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD-SSFLNKTGG 193
+K+ M+FQ AL TV+DN +G +L G E L +L + ++ +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
E+S G QRV LAR LA P++LL+DE SALDP+ ++D LVKL+ KH TIV +SH
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 254 SIKQIQRIADVVCLLVNGEIVEVLKPD 280
+ + RI D + ++ NGE+V+V PD
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPD 250
|
Length = 400 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 8e-39
Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 13/222 (5%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
LK V++E+ +G I+GP+GSGKS LL + +P SG + L+G+DIT+L +R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP--PEKRD 72
Query: 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLNKTGG 193
+ + Q ALF TV NI YG + R E E+ ++L + L LN+
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL----LNRKPE 128
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+S G+ QRVA+AR L P++LLLDEP SALD + + + + L K++K+ G+T++ V+H
Sbjct: 129 TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188
Query: 254 SIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 294
++ +AD V +++NG++++V KP ++ + K+ FL
Sbjct: 189 DFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-38
Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 11/199 (5%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
IL +++++ G I+ + G +G+GK+TL + L L + SG++ L+G+ I + R+
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE---RRK 71
Query: 139 KVGMLFQIP--ALFEGTVVDNIRYG-PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEI 195
+G + Q LF +V + + G +L V K L L L + +
Sbjct: 72 SIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK----ERHPLSL 127
Query: 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255
S GQ QR+A+A L + ++L+ DEPTS LD + + + +++ +L + G +++++H
Sbjct: 128 SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDY 186
Query: 256 KQIQRIADVVCLLVNGEIV 274
+ + ++ D V LL NG IV
Sbjct: 187 EFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 7e-38
Identities = 81/225 (36%), Positives = 127/225 (56%), Gaps = 16/225 (7%)
Query: 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS--- 118
P +V L D IL+GV+MEI + + IIGPSG GKST L+ LNR+ E S
Sbjct: 6 PAIKVNNL-SFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 119 --GTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVVDNIRYG-------PQLRGK 167
G V ++I + +++ LRR+V M+ P LF +V DN+ YG P+L
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 168 KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227
+ E+ + K L D ++K+ ++S GQ QR+ +AR LA +P+VLL+DEP LDP
Sbjct: 125 DIVESAL-KDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272
I++ +E ++ L+ + +T+V+VSH++ Q+ R++D E
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNE 228
|
Length = 261 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-38
Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 20/222 (9%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
R + K G L+ V+ IPKG + + GPSG+GKSTLL+ + P G + ++
Sbjct: 3 RFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVN 62
Query: 125 GRDITDL---DVLSLRRKVGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTE-----N 172
G D++ L ++ LRR++G++FQ +P TV +N+ ++ GK E +
Sbjct: 63 GHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR---TVYENVALPLRVIGKPPREIRRRVS 119
Query: 173 EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 232
EV L+ L + + ++S G+ QRVA+AR + N+P VLL DEPT LDP +
Sbjct: 120 EVLDLVGLKHKARALPS----QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE 175
Query: 233 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
I + ++ + G T++M +H ++ + R+ V L +G +V
Sbjct: 176 IMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 9e-38
Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 14/217 (6%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
+ K G L V++ I KG + + GPSG+GK+TLL+ L P G V +
Sbjct: 3 EFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIA 62
Query: 125 GRDITDL---DVLSLRRKVGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTE--NEVY 175
G D+ L + LRR++G++FQ +P TV +N+ ++RGKK E V
Sbjct: 63 GEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR---TVYENVALPLEVRGKKEREIQRRVG 119
Query: 176 KLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235
L L + ++S G+ QRVA+AR + N P +LL DEPT LDP ++ I D
Sbjct: 120 AALRQVGL-EHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD 178
Query: 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272
+L +L K G T+++ +H + + R+A V +L +G
Sbjct: 179 LLKRL-NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 1e-37
Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 8/202 (3%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
PILKG++ + G +GIIGPSGSGKSTL R L +W P SG+V LDG D+ D L
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409
Query: 138 RKVGMLFQIPALFEGTVVDNI-RYGPQLRGKKLTE----NEVYKL-LSLADLDSSFLNKT 191
R +G L Q LF+GT+ +NI R+G + +K+ E V++L L L + + +
Sbjct: 410 RHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEG 469
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
G +S GQ QR+ALAR L +P +++LDEP S LD + ++ K + G T+V++
Sbjct: 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTVVVI 528
Query: 252 SHSIKQIQRIADVVCLLVNGEI 273
+H + D + +L +G I
Sbjct: 529 AHRPSALA-SVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 1e-37
Identities = 80/211 (37%), Positives = 128/211 (60%), Gaps = 17/211 (8%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--PPS---GTVFL--DGRDI--TD 130
LK +NM + + + +IGPSG GKST LR NR+ + P + G + L D +I +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 131 LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDSSF 187
+D + +R ++ M+FQ P F ++ +N+ YG ++RG K + E V L A L
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 188 LNKTGG---EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
++ G +S GQ QR+ +AR LA +PE+LL DEPTSALDPI+T +IE+++ LK K
Sbjct: 152 KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNK- 210
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+TI++V+H+++Q R++D + GE++E
Sbjct: 211 -VTILIVTHNMQQAARVSDYTAYMYMGELIE 240
|
Length = 265 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-37
Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 27/240 (11%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L +N P+ + +IGP+G+GKSTL R N + +P SG+V + G IT ++ +R+
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79
Query: 140 VGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTE-------NEVYKLLSLADLDSSFLNK 190
VG++FQ P +F TV +I +GP G L E + +L L +L ++
Sbjct: 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLG--LDEETVAHRVSSALHMLGLEEL----RDR 133
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
+S G+ +RVA+A +A EP+VL+LDEPT+ LDP + + D L L + +GMT++
Sbjct: 134 VPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIF 193
Query: 251 VSHSIKQIQRIADVVCLLVNGEIV------EV-LKPDLLSEAKH-----PMALRFLQLSG 298
+H + + +AD + ++ G IV E+ L+PDLL+ P +R LQ G
Sbjct: 194 STHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHLDLPSLPKLIRSLQAQG 253
|
Length = 277 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 2e-37
Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 18/217 (8%)
Query: 49 GEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLR 108
G A A + KP +R+L P+L GV++++P G + I+GPSGSGKSTLL
Sbjct: 320 GSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLA 379
Query: 109 ALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK 168
L L +P G V LDG ++ LD +RR+V + Q LF+ TV +N+R
Sbjct: 380 TLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLA----RPD 435
Query: 169 LTENEVYKLL----------SLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218
T+ E++ L +L D + L + G +S G+ QR+ALAR L + +LLL
Sbjct: 436 ATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 495
Query: 219 DEPTSALDP-ISTQNIEDVLVKLKKKHGMTIVMVSHS 254
DEPT LD + + +ED+L L G T+V+++H
Sbjct: 496 DEPTEHLDAETADELLEDLLAALS---GRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-37
Identities = 74/214 (34%), Positives = 115/214 (53%), Gaps = 13/214 (6%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P+LKG+ + G ++ ++GPSGSGKST+ L L++P G V LDG + D L
Sbjct: 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH 554
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN-------K 190
R+V ++ Q P LF G+V +NI YG + K + D F N +
Sbjct: 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMA-AAKAANAHDFIMEFPNGYDTEVGE 613
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
G ++S GQ QR+A+AR L +P VL+LDE TSALD E +L + + + T+++
Sbjct: 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD----AECEQLLQESRSRASRTVLL 669
Query: 251 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284
++H + ++R AD + +L G +VE+ L E
Sbjct: 670 IAHRLSTVER-ADQILVLKKGSVVEMGTHKQLME 702
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 5e-37
Identities = 74/191 (38%), Positives = 100/191 (52%), Gaps = 6/191 (3%)
Query: 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI 146
+G I I+GPSGSGKSTLL + P SG V ++G D+T R V MLFQ
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA--DRPVSMLFQE 78
Query: 147 PALFEG-TVVDNIRYG--PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV 203
LF TV N+ G P L+ + L+ L + GE+S G+ QRV
Sbjct: 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRV 137
Query: 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263
ALAR L + VLLLDEP +ALDP + D+++ L + MT++MV+H + +R+A
Sbjct: 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQ 197
Query: 264 VVCLLVNGEIV 274
V L NG I
Sbjct: 198 RVVFLDNGRIA 208
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 5e-37
Identities = 80/212 (37%), Positives = 112/212 (52%), Gaps = 19/212 (8%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
P L V++ I G + IIG GSGKSTLL+ L L++P G+V LDG DI +D
Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK--- 190
LRR +G + Q P LF GT+ DNI G + E+ + LA + F+ +
Sbjct: 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPY----ADDEEILRAAELAGVT-EFVRRHPD 589
Query: 191 --------TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
G +S GQ Q VALAR L +P +LLLDEPTSA+D S + +D L +
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW-- 647
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
G T+V+V+H + + D + ++ NG IV
Sbjct: 648 LAGKTLVLVTHR-TSLLDLVDRIIVMDNGRIV 678
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 6e-37
Identities = 70/197 (35%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----LDVLSLRR 138
++ ++ + V GI G SG+GKSTLLR + L +P GT+ L+G + D +++ +R
Sbjct: 17 IDFDLNEEVT-GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75
Query: 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197
K+G++FQ ALF V +N+ +G + + + V +LL L LD LN+ ++S
Sbjct: 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSG 134
Query: 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257
G+ QRVALAR LA +PE+LLLDEP SALD + L ++KK + ++ V+H + +
Sbjct: 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194
Query: 258 IQRIADVVCLLVNGEIV 274
+ +AD + ++ +G +
Sbjct: 195 AEYLADRIVVMEDGRLQ 211
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 7e-37
Identities = 80/212 (37%), Positives = 116/212 (54%), Gaps = 19/212 (8%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
+ P L V++ I G + IIG GSGKSTLL+ L L++P SG+V LDG DI LD
Sbjct: 14 NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP 73
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKT-- 191
LRR +G + Q LF GT+ DNI G L + + + LA + F+NK
Sbjct: 74 ADLRRNIGYVPQDVTLFYGTLRDNITLGAPL----ADDERILRAAELAGVT-DFVNKHPN 128
Query: 192 ---------GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
G +S GQ Q VALAR L N+P +LLLDEPTSA+D S + +++ L +L
Sbjct: 129 GLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG 188
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
T+++++H + + D + ++ +G IV
Sbjct: 189 --DKTLIIITHRPSLLD-LVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 7e-37
Identities = 73/208 (35%), Positives = 119/208 (57%), Gaps = 8/208 (3%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT----DLDVLS 135
+ VN E +G I+G +GSGKSTL++ +N L +P +GTV +D IT D +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 136 LRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLNKT 191
+R+++GM+FQ P LFE TV I +GP+ L E N ++LL ++++
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
++S GQ +++A+ LA P++++LDEPT+ LDP S + + +L L+ TI++V
Sbjct: 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILV 202
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEVLKP 279
SH + ++ R AD V ++ G IV P
Sbjct: 203 SHDMNEVARYADEVIVMKEGSIVSQTSP 230
|
Length = 286 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 8e-37
Identities = 58/199 (29%), Positives = 115/199 (57%), Gaps = 7/199 (3%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
+L +++ + KG I G +GP+G+GK+T ++ + L +P SG + DG+
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNI--EAL 71
Query: 138 RKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEIS 196
R++G L + P + T +N+R +L G + + + ++L + L S K G S
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIR--KKRIDEVLDVVGLKDSAKKKVKG-FS 128
Query: 197 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
+G QR+ +A L P++L+LDEPT+ LDP + + ++++ L+ + G+T+++ SH +
Sbjct: 129 LGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLS 187
Query: 257 QIQRIADVVCLLVNGEIVE 275
+IQ++AD + ++ G+++E
Sbjct: 188 EIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 8e-37
Identities = 70/208 (33%), Positives = 123/208 (59%), Gaps = 9/208 (4%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT----DLDVLS 135
L ++ E+ +G + ++G +GSGKSTL++ N L +P SGT+ + G IT + ++
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 136 LRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKT 191
LR+KV ++FQ P LFE TV+ ++ +GP+ G + + + K L L ++K+
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS 142
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
E+S GQ +RVA+A +A EPE+L LDEP + LDP + + + +K G T+++V
Sbjct: 143 PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILV 201
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEVLKP 279
+H++ + AD V +L +G++++ P
Sbjct: 202 THNMDDVAEYADDVLVLEHGKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 9e-37
Identities = 62/196 (31%), Positives = 118/196 (60%), Gaps = 9/196 (4%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+ +++ +PK + G++GP+G+GKSTLL+ + + P SG + DG T D+
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDL----H 70
Query: 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197
K+G L + P L+E T +N++ L G L ++ + ++L++ DL ++ K + S+
Sbjct: 71 KIGSLIESPPLYENLTARENLKVHTTLLG--LPDSRIDEVLNIVDLTNTG-KKKAKQFSL 127
Query: 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257
G QR+ +A L N P++L+LDEPT+ LDPI Q + + L++ + G+T+++ SH + +
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE-LIRSFPEQGITVILSSHILSE 186
Query: 258 IQRIADVVCLLVNGEI 273
+Q++AD + ++ G +
Sbjct: 187 VQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-36
Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 33/244 (13%)
Query: 63 KFRVRELRKESDDGAPI----LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS 118
+ +V+ + K + P L V++EI +G + IIG +GSGK+T + LN L P +
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 119 GTV---FLDGRDITDLD---------------------VLSLRRKVGMLFQIP--ALFEG 152
GT+ F D ++ + +RR+VG++FQ LFE
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 153 TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210
T+ +I +GP G K+ + K + L LD S+L ++ E+S GQ +RVALA LA
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA 181
Query: 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270
EP+ L+ DEPT+ LDP + I ++ L K+ G TI++V+H + + +
Sbjct: 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKD 240
Query: 271 GEIV 274
G+I+
Sbjct: 241 GKII 244
|
Length = 305 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 1e-36
Identities = 68/210 (32%), Positives = 122/210 (58%), Gaps = 17/210 (8%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G+ IL +++ I I+G SGSGKSTL + L ++ SG + L+G + D+D +
Sbjct: 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHT 545
Query: 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF-------- 187
LR+ + L Q P +F G++++N+ G + + ++++E++ +A++
Sbjct: 546 LRQFINYLPQEPYIFSGSILENLLLGAK---ENVSQDEIWAACEIAEIKDDIENMPLGYQ 602
Query: 188 --LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
L++ G IS GQ QR+ALAR L + +VL+LDE TS LD I+ + I + L+ L+ K
Sbjct: 603 TELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK-- 660
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
TI+ V+H + + + +D + +L +G+I+E
Sbjct: 661 -TIIFVAHRL-SVAKQSDKIIVLDHGKIIE 688
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-36
Identities = 79/223 (35%), Positives = 125/223 (56%), Gaps = 20/223 (8%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
DG IL V+++I G + I+GPSGSGKSTLLR L P SG+VF DG+D+ LDV
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV 522
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS-------- 185
++RR++G++ Q L G++ +NI G LT +E ++ +A L
Sbjct: 523 QAVRRQLGVVLQNGRLMSGSIFENI-----AGGAPLTLDEAWEAARMAGLAEDIRAMPMG 577
Query: 186 --SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
+ +++ GG +S GQ QR+ +AR L +P +LL DE TSALD + + + L +LK
Sbjct: 578 MHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK-- 635
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
+T ++++H + I+ AD + +L G +V+ D L +
Sbjct: 636 --VTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMARE 675
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-36
Identities = 68/214 (31%), Positives = 123/214 (57%), Gaps = 8/214 (3%)
Query: 65 RVRELRK-ESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123
++R L K P + +++ + KG I G++G +G+GK+T L+ L P SGT ++
Sbjct: 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61
Query: 124 DGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTEN--EVYKLLSL 180
+G I D + R+ +G Q ALF+ TV +++R+ +L+G +E EV LL +
Sbjct: 62 NGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120
Query: 181 ADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
L + NK +S G ++++LA L P VLLLDEPTS LDP S + I D+++++
Sbjct: 121 LGL-TDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
+K +I++ +HS+ + + + D + ++ +G++
Sbjct: 180 RKGR--SIILTTHSMDEAEALCDRIAIMSDGKLR 211
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 3e-36
Identities = 74/213 (34%), Positives = 120/213 (56%), Gaps = 18/213 (8%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
P L +++ I G + ++G SGSGKSTL+ + R +EP SG + LDG D+ D +
Sbjct: 342 GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK--- 190
SLRR+V ++ Q LF T+ +NI YG R ++ E+ + L+ A F++K
Sbjct: 402 ASLRRQVALVSQDVVLFNDTIANNIAYG---RTEQADRAEIERALAAAYA-QDFVDKLPL 457
Query: 191 --------TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
G +S GQ QR+A+AR L + +L+LDE TSALD S + ++ L +L +
Sbjct: 458 GLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ 517
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
G T ++++H + I++ AD + ++ +G IVE
Sbjct: 518 --GRTTLVIAHRLSTIEK-ADRIVVMDDGRIVE 547
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-36
Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 25/224 (11%)
Query: 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF 122
+FR D +L +N++I G +GI+GPSGSGKSTL + L RL+ P G V
Sbjct: 462 RFRYAP------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515
Query: 123 LDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYG-PQLRGKKLTENEVYKLLSLA 181
+DG D+ D LRR++G++ Q LF ++ DNI P V LA
Sbjct: 516 VDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG-----APFEHVIHAAKLA 570
Query: 182 -------DLDSSF---LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
+L + + + G +S GQ QR+A+AR L P +L+ DE TSALD S
Sbjct: 571 GAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
I + ++ + G T+++++H + + R D + +L G+I E
Sbjct: 631 LIMRNMREICR--GRTVIIIAHRLSTV-RACDRIIVLEKGQIAE 671
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 3e-36
Identities = 78/209 (37%), Positives = 119/209 (56%), Gaps = 17/209 (8%)
Query: 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL 136
PIL G++ IP G + I+G SG+GKST+LR L R ++ SG++ +DG+DI D+ SL
Sbjct: 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335
Query: 137 RRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYK----------LLSLADLDSS 186
RR +G++ Q LF T+ NI+YG T EV + SL + +
Sbjct: 336 RRAIGIVPQDTVLFNDTIAYNIKYG----RPDATAEEVGAAAEAAQIHDFIQSLPEGYDT 391
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
+ + G ++S G+ QRVA+ART+ P +L+LDE TSALD + Q I+ L ++
Sbjct: 392 GVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR-- 449
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T ++++H + I AD + +L NG IVE
Sbjct: 450 TTLVIAHRLSTIID-ADEIIVLDNGRIVE 477
|
Length = 497 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 4e-36
Identities = 70/214 (32%), Positives = 111/214 (51%), Gaps = 23/214 (10%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
DG IL +++ I G ++GI+G SGSGKSTL + + R + P +G V +DG D+ D
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPA 72
Query: 135 SLRRKVGMLFQIPALFEGTVVDNI---RYGPQLRGKKLTENEVYKLLSLADLDS------ 185
LRR+VG++ Q LF ++ DNI G + V + LA
Sbjct: 73 WLRRQVGVVLQENVLFNRSIRDNIALADPGMSME-------RVIEAAKLAGAHDFISELP 125
Query: 186 ----SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
+ + + G +S GQ QR+A+AR L + P +L+ DE TSALD S I + +
Sbjct: 126 EGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC 185
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
G T+++++H + ++ AD + ++ G IVE
Sbjct: 186 A--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVE 216
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 4e-36
Identities = 79/229 (34%), Positives = 114/229 (49%), Gaps = 24/229 (10%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G +L V++ + G ++ I+GP+G+GKSTLLRAL+ P SG V L+GR + D
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73
Query: 136 LRRKVGMLFQIPAL-FEGTVVDNIRYG--PQLRGKKLTENEVYKLLSLADL----DSSFL 188
L R+ +L Q +L F TV + + G P + + V L+ DL +
Sbjct: 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP 133
Query: 189 NKTGGEISVGQAQRVALARTLA------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
+GGE Q QRV LAR LA P LLLDEPTSALD ++ + +L
Sbjct: 134 QLSGGE----Q-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAH 188
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 285
+ G+ +++V H + R AD + LL G +V EVL P+ L
Sbjct: 189 ERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETLRRV 237
|
Length = 258 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 5e-36
Identities = 68/202 (33%), Positives = 111/202 (54%), Gaps = 9/202 (4%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
+L+ V+ + G + ++GPSGSGKST++ L ++P G V LDG+ I+ + L
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87
Query: 138 RKVGMLFQIPALFEGTVVDNIRYG-PQLRGKKLTENEVYK-----LLSLADLDSSFLNKT 191
KV ++ Q P LF ++ DNI YG + + E + LA + + +
Sbjct: 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK 147
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
G ++S GQ QRVA+AR L P+VL+LDE TSALD S Q ++ L ++ T++++
Sbjct: 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--TVLVI 205
Query: 252 SHSIKQIQRIADVVCLLVNGEI 273
+H + ++R AD + +L G I
Sbjct: 206 AHRLSTVER-ADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 6e-36
Identities = 86/232 (37%), Positives = 132/232 (56%), Gaps = 13/232 (5%)
Query: 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
P +R L K S DG + V++ I KG I ++G SG GKSTLLR L +P +G +
Sbjct: 18 PLLEIRNLTK-SFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 122 FLDGRDITDLDVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENE----VYK 176
LDG D++ V +R + M+FQ ALF TV NI +G L+ KL + E V +
Sbjct: 77 MLDGVDLS--HVPPYQRPINMMFQSYALFPHMTVEQNIAFG--LKQDKLPKAEIASRVNE 132
Query: 177 LLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236
+L L + F + ++S GQ QRVALAR+LA P++LLLDEP ALD ++
Sbjct: 133 MLGLVHM-QEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191
Query: 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288
+V + ++ G+T VMV+H ++ +A + ++ G+ V++ +P+ + E HP
Sbjct: 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE--HP 241
|
Length = 377 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 7e-36
Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 19/209 (9%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P L G+N+ + G + ++GPSG+GKSTL + L R ++P SG + LDG D+ LD LR
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 138 RKVGMLFQIPALFEGTVVDNIRYG-PQLRGKKLTENEVYKLLSLADLD----------SS 186
++ ++ Q P LF +V++NIRYG P T+ EV A +
Sbjct: 414 ARMALVPQDPVLFAASVMENIRYGRPD-----ATDEEVEAAARAAHAHEFISALPEGYDT 468
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
+L + G +S GQ QR+A+AR + + +LLLDE TSALD S Q ++ L L K G
Sbjct: 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GR 526
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T ++++H + + + AD + ++ G IV
Sbjct: 527 TTLIIAHRLATVLK-ADRIVVMDQGRIVA 554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-35
Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 27/250 (10%)
Query: 42 EHLLTVPGEAEAEDDNQIQKPK---FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGP 98
L P + + ++ +L S DG + +N +P G + ++GP
Sbjct: 325 VTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGP 384
Query: 99 SGSGKSTLLRALNRL-WEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDN 157
SG+GK++LL AL L + P G++ ++G ++ +LD S R+ + + Q P L GT+ DN
Sbjct: 385 SGAGKTSLLNAL--LGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442
Query: 158 IRYG-PQLRGKKLTENEVYKLLSLADLDSSFLNKT-----------GGEISVGQAQRVAL 205
+ G P ++ ++ + L A + S FL +SVGQAQR+AL
Sbjct: 443 VLLGNPDA-----SDEQLQQALENAWV-SEFLPLLPQGLDTPIGDQAAGLSVGQAQRLAL 496
Query: 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
AR L ++LLLDEPT++LD S Q + L ++ T +MV+H ++ + + D +
Sbjct: 497 ARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQ--TTLMVTHQLEDLAQW-DQI 553
Query: 266 CLLVNGEIVE 275
++ +G+IV+
Sbjct: 554 WVMQDGQIVQ 563
|
Length = 588 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-35
Identities = 69/188 (36%), Positives = 111/188 (59%), Gaps = 10/188 (5%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR--DITDLD 132
G +LKG+N +G ++ ++G +G+GKSTLL LN L P SG V +DG D +
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 133 VLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENEVYKLL--SLADLD-SSF 187
+L R++VG++FQ P LF V ++ +GP G L+E EV + + +L + S
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG--LSEAEVERRVREALTAVGASGL 120
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
+ +S G+ +RVA+A +A P+VLLLDEPT+ LDP + + +L +L+ + GMT
Sbjct: 121 RERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMT 179
Query: 248 IVMVSHSI 255
+V+ +H +
Sbjct: 180 VVISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 1e-35
Identities = 68/214 (31%), Positives = 117/214 (54%), Gaps = 20/214 (9%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
+ P+LK ++ I G +GI+G +GSGKS+LL AL RL E SG++ +DG DI+ +
Sbjct: 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG 72
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
+ LR ++ ++ Q P LF GT+ N+ P + ++ E+++ L L + G
Sbjct: 73 LHDLRSRISIIPQDPVLFSGTIRSNL--DP---FGEYSDEELWQALERVGLKEFVESLPG 127
Query: 193 GE----------ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
G +SVGQ Q + LAR L + ++L+LDE T+++DP + I+ + + K
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK 187
Query: 243 KHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVE 275
T++ ++H + I I +D + +L G +VE
Sbjct: 188 DC--TVLTIAHRLDTI--IDSDRILVLDKGRVVE 217
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 1e-35
Identities = 76/208 (36%), Positives = 120/208 (57%), Gaps = 15/208 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSL 136
+ G+++ + +G +G++G SGSGKSTL AL RL P G + DG+DI L + L
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPL 361
Query: 137 RRKVGMLFQIPALFEG-----TVVDNIRYGPQLRGKKLTENE----VYKLLSLADLDSSF 187
RR++ ++FQ P + TV I G ++ KL+ E V + L LD +
Sbjct: 362 RRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT 419
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
N+ E S GQ QR+A+AR L +PE++LLDEPTSALD + D+L L++KHG++
Sbjct: 420 RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLS 479
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+ +SH + ++ + V ++ +G+IVE
Sbjct: 480 YLFISHDLAVVRALCHRVIVMRDGKIVE 507
|
Length = 534 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-35
Identities = 68/204 (33%), Positives = 119/204 (58%), Gaps = 9/204 (4%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---DVLS 135
+LKGV++ I KG I+ I+G SGSGKSTLL L L P SG V +G+ ++ L +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 136 LR-RKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLNKT 191
LR +K+G ++Q L + T ++N+ + K + E Y++L L+ +N
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-INHR 138
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
E+S G+ QRVA+AR L N+P ++L DEPT LD + + I D++++L ++ + ++V
Sbjct: 139 PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVV 198
Query: 252 SHSIKQIQRIADVVCLLVNGEIVE 275
+H ++ +++ D V + +G++
Sbjct: 199 THDLELAKKL-DRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-35
Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 6/224 (2%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
V +L K ++ V+ E +G I G++G +G+GK+TLLR + L P SG V +D
Sbjct: 3 EVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTID 62
Query: 125 GRDITDLDVLSLRRKVGMLF-QIPALFEGTVVDNIRYGPQLRG--KKLTENEVYKLLSLA 181
G D D +RRK+G+LF + T +N++Y +L G +K + + +L
Sbjct: 63 GVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL 121
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
L +L++ GE S G Q+VA+AR L ++P +L+LDEPTS LD + + D + +LK
Sbjct: 122 QLLE-YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285
+ G ++ SH +++++ + D V +L GE+V + L
Sbjct: 181 NE-GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223
|
Length = 245 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-35
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 12/201 (5%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
+ GV+ + G + G++GP+G+GK+T LR L L EP +G +DG D + RR+
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD-VVKEPAEARRR 79
Query: 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLNKTGG 193
+G + L++ T +N+ Y L G K E E+ L + + L++ G
Sbjct: 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE----LLDRRVG 135
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
S G Q+VA+AR L ++P VLLLDEPT+ LD ++T+ + + + +L+ G I+ +H
Sbjct: 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTH 194
Query: 254 SIKQIQRIADVVCLLVNGEIV 274
+++++R+ D V +L G +V
Sbjct: 195 IMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 3e-35
Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 11/219 (5%)
Query: 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG 119
P +R + K S DG ++ +++ I G + ++GPSG GK+T+LR + P SG
Sbjct: 11 LSPLVELRGISK-SFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG 69
Query: 120 TVFLDGRDITDLDVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENE----V 174
+ LDG+DIT + + R V +FQ ALF TV +N+ +G LR +K E V
Sbjct: 70 RIMLDGQDITHVP--AENRHVNTVFQSYALFPHMTVFENVAFG--LRMQKTPAAEITPRV 125
Query: 175 YKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234
+ L + L+ F + ++S GQ QRVA+AR + N+P+VLLLDE SALD + ++
Sbjct: 126 MEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 184
Query: 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
+ L L++K G+T V V+H ++ ++D + ++ +G I
Sbjct: 185 NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI 223
|
Length = 375 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-35
Identities = 74/206 (35%), Positives = 124/206 (60%), Gaps = 15/206 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132
++G++M+I + + IIGPSG GKST ++ LNR+ E G V G++I D ++
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK--KLTENEV----YKLLSLADLDSS 186
+ LRR++GM+FQ P F ++ +N+ YG ++ K + +E+ K +L
Sbjct: 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD 142
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
LNK+ +S GQ QR+ +AR LA +P+VLL+DEP SALDPI+T +E+++ L+ + +
Sbjct: 143 KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE--L 200
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGE 272
TI +V+H+++Q R++D E
Sbjct: 201 TIAIVTHNMQQATRVSDFTAFFSTDE 226
|
Length = 259 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 4e-35
Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD------ 132
+L G+N + G + +IGPSGSGKST+LR L L G + ++G + +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 133 -------VLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQL-RGKKLTEN-----EVYKLL 178
+ +R K+GM+FQ LF TV+DN+ P L G E E+ ++
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV 134
Query: 179 SLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238
LAD ++S GQ QRVA+AR LA P+V+L DE TSALDP + +V+
Sbjct: 135 GLADKADHM----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190
Query: 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
+L +H +T+++V+H + + AD VC G IVE KPD
Sbjct: 191 RLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPD 232
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 5e-35
Identities = 80/208 (38%), Positives = 111/208 (53%), Gaps = 15/208 (7%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VL 134
ILKGV + + +G + I+GPSGSGKSTLL L L +P SG V L G+ + LD
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 135 SLRRK-VGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSF 187
+LR + VG +FQ IP L T ++N+ +LRG+ + LL L
Sbjct: 84 ALRARHVGFVFQSFHLIPNL---TALENVALPLELRGESSADSRAGAKALLEAVGL-GKR 139
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
L ++S G+ QRVALAR A P+VL DEPT LD + I D+L L ++ G T
Sbjct: 140 LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTT 199
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+V+V+H + R D L +G +VE
Sbjct: 200 LVLVTHDPQLAAR-CDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 6e-35
Identities = 75/224 (33%), Positives = 130/224 (58%), Gaps = 13/224 (5%)
Query: 60 QKPKFRVRELR-KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS 118
++ RV + + D LK V+ + +G + I+G +GSGKSTL + LN L P +
Sbjct: 2 KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61
Query: 119 GTVFLDGRDITDLDVLSLRRKVGMLFQIP-ALFEG-TVVDNIRYGPQLRGKKLTE----- 171
GT+ + G +++ V +RR+VGM+FQ P F G TV D++ +G + G E
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERV 121
Query: 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
++ + + + D FLN+ +S GQ QRVA+A LA +P++++LDE TS LDP +
Sbjct: 122 DQALRQVGMED----FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+ + + +LK++ G+T++ ++H + + + AD V ++ GEI+E
Sbjct: 178 EVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILE 220
|
Length = 279 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 7e-35
Identities = 69/197 (35%), Positives = 113/197 (57%), Gaps = 12/197 (6%)
Query: 95 IIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF-EGT 153
++GPSG GK+TLLR L +P SG++ LDG D+T+ V R + M+FQ ALF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTN--VPPHLRHINMVFQSYALFPHMT 58
Query: 154 VVDNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208
V +N+ +G ++R E E +L+ L + + ++S GQ QRVALAR
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH----QLSGGQQQRVALARA 114
Query: 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268
L +P++LLLDEP SALD ++ L ++++ G+T V V+H ++ ++D + ++
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 269 VNGEIVEVLKPDLLSEA 285
G+I ++ P+ + E
Sbjct: 175 RKGKIAQIGTPEEIYEE 191
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 8e-35
Identities = 73/185 (39%), Positives = 107/185 (57%), Gaps = 13/185 (7%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD---ITDLDVLS 135
IL +N+ I KG + IIG SGSGKSTLL + L + SG V+L+G++ +
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 136 LRR-KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLN 189
RR K+G LFQ AL E TV +N+ G L+ KKL++ E + L L+ L
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLG--LKYKKLSKKEKREKKKEALEKVGLNLK-LK 129
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+ E+S G+ QRVALAR + P ++L DEPT +LDP + + D+L++L + G TI+
Sbjct: 130 QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTII 188
Query: 250 MVSHS 254
+V+H
Sbjct: 189 IVTHD 193
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 9e-35
Identities = 80/215 (37%), Positives = 118/215 (54%), Gaps = 28/215 (13%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV------FLDGRDITDLD 132
L + ++ P+G + ++GPSG+GKS+LLR LN L P SGT+ F + +D
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 133 VLSLRRKVGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTENE-------VYKLLSLA 181
+ LRR VGM+FQ P L TV N+ P R L++++ + + L L
Sbjct: 77 IRELRRNVGMVFQQYNLWPHL---TVQQNLIEAP-CRVLGLSKDQALARAEKLLERLRLK 132
Query: 182 DLDSSF-LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
F L+ +GG Q QRVA+AR L EP+VLL DEPT+ALDP T I ++ +L
Sbjct: 133 PYADRFPLHLSGG-----QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL 187
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+ G+T V+V+H ++ ++ A V + NG IVE
Sbjct: 188 AET-GITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 1e-34
Identities = 76/203 (37%), Positives = 116/203 (57%), Gaps = 8/203 (3%)
Query: 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL 136
P L+G++ + G + IIGPSGSGKSTL R + +W P SG+V LDG D+ D +
Sbjct: 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390
Query: 137 RRKVGMLFQIPALFEGTVVDNI-RYGPQLRGKKLTE----NEVYKL-LSLADLDSSFLNK 190
+ +G L Q LF GTV +NI R+G +K+ E V++L L L D + +
Sbjct: 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGP 450
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
G +S GQ QR+ALAR L +P++++LDEP S LD Q + + + LK + G+T+V+
Sbjct: 451 GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR-GITVVV 509
Query: 251 VSHSIKQIQRIADVVCLLVNGEI 273
++H + D + +L +G I
Sbjct: 510 ITHRPSLLG-CVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-34
Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 22/208 (10%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG------RDITDLDVLSL 136
+ ++ P+G + ++GPSG+GKS+LLR LN L P SGT+ + G + +D + L
Sbjct: 21 ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80
Query: 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTEN-------EVYKLLSLADLDSSF- 187
RR VGM+FQ L+ TV +N+ P R L+++ ++ K L L +
Sbjct: 81 RRNVGMVFQQYNLWPHLTVQENLIEAP-CRVLGLSKDQALARAEKLLKRLRLKPYADRYP 139
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
L+ +GG Q QRVA+AR L EP+VLL DEPT+ALDP T I ++ +L + G+T
Sbjct: 140 LHLSGG-----QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET-GIT 193
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
V+V+H ++ ++ A V + NG IVE
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-34
Identities = 63/211 (29%), Positives = 123/211 (58%), Gaps = 15/211 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
++GV+ + +G I G++GP+G+GK+T ++ L L +P SG + G D+ + +RR+
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR 74
Query: 140 VGMLFQIPALFEG-TVVDNIR-----YGPQLRGKKLTE--NEVYKLLSLADLDSSFLNKT 191
+G++FQ ++ + T +N+ YG + G + E +E+ + L + ++
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYG--VPGAERRERIDELLDFVGLLE----AADRL 128
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
S G +R+ +AR+L + PEVL LDEPT LDP + ++ + + KLK++ GMTI++
Sbjct: 129 VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT 188
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
+H +++ +++ D V ++ +G I+ P+ L
Sbjct: 189 THYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-34
Identities = 73/216 (33%), Positives = 122/216 (56%), Gaps = 12/216 (5%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
DG LKG+++ IP+G ++GP+G+GKSTLL LN ++ P G V + GR++ +
Sbjct: 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEK 75
Query: 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQ---LRGKKLTE--NEVYKLLSLADLDSSF 187
+R KVG++FQ P +F TV D++ +GP L ++ E K + + D F
Sbjct: 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD----F 131
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
+K +S GQ +RVA+A LA +P+V++LDEP + LDP + + ++L +L + G T
Sbjct: 132 RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKT 190
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283
+++ +H + AD V +L G ++ LL+
Sbjct: 191 VIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 5e-34
Identities = 69/209 (33%), Positives = 118/209 (56%), Gaps = 15/209 (7%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
+ IL+GV++E+PKG + ++G +G GK+TLL+ L L SG++ LDG DIT L
Sbjct: 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH 70
Query: 135 SLRRKVGMLF-----QI-PALFEGTVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDSS 186
R + G+ + +I P L TV +N+ G ++ + +E+Y+L +
Sbjct: 71 E-RARAGIAYVPQGREIFPRL---TVEENLLTGLAALPRRSRKIPDEIYELFPVLK---E 123
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L + GG++S GQ Q++A+AR L P++LLLDEPT + P ++I V+ +L+ + GM
Sbjct: 124 MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
I++V + + +AD ++ G +V
Sbjct: 184 AILLVEQYLDFARELADRYYVMERGRVVA 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 6e-34
Identities = 61/207 (29%), Positives = 113/207 (54%), Gaps = 10/207 (4%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-L 134
G L GV++ + G + ++G +G+GKSTL++ L+ ++ P SG + +DG+ +
Sbjct: 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79
Query: 135 SLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG------KKLTENEVYKLLSLADLDSSF 187
+L + + Q +L +V +NI G + +K +LL+ LD
Sbjct: 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID- 138
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
+ G++S+ Q Q V +AR L+ + VL+LDEPT+AL T+ + D++ +LK + G+
Sbjct: 139 PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ-GVA 197
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIV 274
I+ +SH + ++ IAD + +L +G +V
Sbjct: 198 IIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 7e-34
Identities = 70/210 (33%), Positives = 119/210 (56%), Gaps = 11/210 (5%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
L+ V++ I G ++ ++GPSG GK+TLL + P G++ L+GR I
Sbjct: 17 PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP---G 73
Query: 136 LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKTG 192
R G++FQ AL V+DN+ +G QLRG K +++L+L L+ +K
Sbjct: 74 AER--GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG-AEHKYI 130
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
++S G QRV +AR LA EP++LLLDEP ALD ++ + ++++L+ L ++ G +++++
Sbjct: 131 WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT 190
Query: 253 HSIKQIQRIADVVCLL--VNGEIVEVLKPD 280
H I++ +A + +L G +VE L D
Sbjct: 191 HDIEEALFLATRLVVLSPGPGRVVERLPLD 220
|
Length = 259 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 7e-34
Identities = 72/213 (33%), Positives = 118/213 (55%), Gaps = 8/213 (3%)
Query: 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR 126
+ K +G L G+N+ I G + ++GPSG+GKSTLL+ + + P SGT+ ++G+
Sbjct: 4 INVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQ 63
Query: 127 DITDLD---VLSLRRKVGMLFQ-IPALFEGTVVDNIRYGPQLRGK--KLTENEVYKLLSL 180
D++DL + LRRK+G++FQ L + V +N+ + ++ G + V L L
Sbjct: 64 DVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALEL 123
Query: 181 ADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
L S E+S G+ QRVA+AR + N P +L+ DEPT LDP +T I ++L K+
Sbjct: 124 VGL-SHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI 182
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
K G T+V+ +H+ + + V L G++
Sbjct: 183 NKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-33
Identities = 54/212 (25%), Positives = 102/212 (48%), Gaps = 52/212 (24%)
Query: 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123
+R + K G L GV++ + +G + ++G +G+GKSTL++ L+ L++P SG + +
Sbjct: 1 LELRGITK-RFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV 59
Query: 124 DGRDITDLDVL-SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLAD 182
DG++++ + R + M++Q+
Sbjct: 60 DGKEVSFASPRDARRAGIAMVYQL------------------------------------ 83
Query: 183 LDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
SVG+ Q V +AR LA +L+LDEPT+AL P + + V+ +L+
Sbjct: 84 -------------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA 130
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
+ G+ ++ +SH + ++ IAD V +L +G +V
Sbjct: 131 Q-GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (311), Expect = 1e-33
Identities = 79/211 (37%), Positives = 121/211 (57%), Gaps = 10/211 (4%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVLSLRR 138
+++E+ KG +IG +GSGKSTLL+ LN L +P G V + ++ ++ +R+
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 139 KVGMLFQIP--ALFEGTVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKTGGE 194
KVG++FQ P LFE TV+ ++ +GPQ G K+ E + L + L F K+ E
Sbjct: 85 KVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE 144
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
+S GQ +RVA+A LA EPEVL+LDEPT+ LDP + + + + + G T+V+V+H
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHL 203
Query: 255 IKQIQRIADVVCLLVNGEIVEVLKP-DLLSE 284
+ + AD V LL G I+ P D+ E
Sbjct: 204 MDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-33
Identities = 89/248 (35%), Positives = 137/248 (55%), Gaps = 26/248 (10%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125
V+ L K+ G +L G+++E+ G ++ IIGPSGSGK+TLLR +N L +P +GT+ +
Sbjct: 6 VKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGD 64
Query: 126 RDITDLDVLS--------LRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEV-- 174
I LS LR+ VG +FQ LF TV++NI GP + + E
Sbjct: 65 ITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR 124
Query: 175 -YKLLS---LADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 230
+LL+ LA ++S+ + G GQ QRVA+AR LA PEV+L DEPTSALDP
Sbjct: 125 ARELLAKVGLAGKETSYPRRLSG----GQQQRVAIARALAMRPEVILFDEPTSALDP--- 177
Query: 231 QNIEDVLVKLKK--KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKH 287
+ + +VL +++ + T+V+V+H + + +AD + G IVE L ++ +
Sbjct: 178 ELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQ 237
Query: 288 PMALRFLQ 295
P +FL+
Sbjct: 238 PRTRQFLE 245
|
Length = 250 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-33
Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 20/235 (8%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVF 122
+++L E + ILKGVN+ + +G + I+GP+GSGKSTL + + +E G +
Sbjct: 5 EIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL 64
Query: 123 LDGRDITDLDVLSLRRK-VGMLFQIPALFEG-TVVDNIR--YGPQLRGKKLT---ENEVY 175
DG DI +L R + + FQ P G T D +R + + + E+
Sbjct: 65 FDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELK 124
Query: 176 KLLSLADLDSSFLNKTGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234
+ L LD FL + E S G+ +R + + L EP++ +LDEP S LD + + +
Sbjct: 125 EKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA 184
Query: 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIA-----DVVCLLVNGEIVEVLKPDLLSE 284
+ + L+++ G +++++H QR+ D V +L +G IV+ P+L E
Sbjct: 185 EGINALREE-GRGVLIITHY----QRLLDYIKPDKVHVLYDGRIVKSGDPELAEE 234
|
Length = 251 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 4e-33
Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 10/228 (4%)
Query: 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS- 135
AP+L V++ I +G +G++G SG GKSTL R L L +P GTV G+D+ LD
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQR 83
Query: 136 --LRRKVGMLFQ--IPALFEGTVVDNIRYGPQLRGKKLTENE----VYKLLSLADLDSSF 187
RR V ++FQ A+ V I P L E+E + +LL + L S
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED 143
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
+K ++S GQ QR+ +AR LA +P++++LDE S LD + I ++L KL++ G
Sbjct: 144 ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ 295
+ ++H ++ +Q V ++ G+IVE L KHP A R LQ
Sbjct: 204 YLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHP-AGRNLQ 250
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-33
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 22/238 (9%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL-----WEPPSGTVFLDGRDITDLD 132
+KG++ +I G + ++G SGSGKS ++ L PSG++ DG D+
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83
Query: 133 VLSLRR----KVGMLFQIP--AL-----FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLA 181
LR K+GM+FQ P +L + + +R L +LL L
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARA-RALELLELV 142
Query: 182 DLD--SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLV 238
+ L+ E+S GQ QRV +A LANEP++L+ DEPT+ALD ++ Q I D+L
Sbjct: 143 GIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALD-VTVQAQILDLLK 201
Query: 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 295
+L+ + GM I+ ++H + +++ AD V ++ +GEIVE L + +HP + L
Sbjct: 202 ELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLLA 259
|
Length = 534 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 5e-33
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 23/235 (9%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125
+ + K S +L V+++IPKG I IIGP+G+GKSTLL ++RL + SG + +DG
Sbjct: 4 IENVSK-SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG 62
Query: 126 RDITDLDVLSLRRKVGMLFQ---IPALFEGTVVDNIRYG--PQLRGKKLTE-----NEVY 175
++T L +K+ +L Q I + TV D + +G P +G+ E NE
Sbjct: 63 LELTSTPSKELAKKLSILKQENHINSRL--TVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120
Query: 176 KLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235
+ L L DL +L+ E+S GQ QR +A LA + + +LLDEP + LD + I
Sbjct: 121 EYLHLEDLSDRYLD----ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSE 284
+L +L + G TIV+V H I +D + L NG++V E+++P++LSE
Sbjct: 177 ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSE 231
|
Length = 252 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 5e-33
Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 18/230 (7%)
Query: 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL 136
LK N+ + +G + I+G SGSGKSTLL+ L W+P G++ L+G +I LD +L
Sbjct: 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410
Query: 137 RRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD----------SS 186
R + +L Q LF GT+ DN+R L ++ E++ L L+ ++
Sbjct: 411 RETISVLTQRVHLFSGTLRDNLR----LANPDASDEELWAALQQVGLEKLLESAPDGLNT 466
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
+L + G +S G+ +R+ALAR L ++ + LLDEPT LDPI+ + + +L + G
Sbjct: 467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL--FEHAEGK 524
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQL 296
T++MV+H ++ ++R D + +L NG+I+E L A + R QL
Sbjct: 525 TLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELL-ANNGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-33
Identities = 72/216 (33%), Positives = 121/216 (56%), Gaps = 10/216 (4%)
Query: 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130
+ LK V+ EI +G + I+G +GSGKST+ + L L +P SG + +DG I+
Sbjct: 16 SYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK 75
Query: 131 LDVLSLRRKVGMLFQIP-ALFEG-TVVDNIRYGPQLRGKKLTENE----VYKLLSLADLD 184
++ +R+K+G++FQ P F G TV D+I +G L KK+ + + L ++
Sbjct: 76 ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG--LENKKVPPKKMKDIIDDLAKKVGME 133
Query: 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
+L+K +S GQ QRVA+A LA PE+++ DE TS LDP + I+ ++V L+K
Sbjct: 134 -DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTR 192
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
T++ ++H + + +AD V + G+++ KP
Sbjct: 193 KKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPK 227
|
Length = 271 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 9e-33
Identities = 63/203 (31%), Positives = 116/203 (57%), Gaps = 6/203 (2%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
+ GVN ++ +G + G +GP+G+GK+T +R L L P SGT + G D+ +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPR 62
Query: 135 SLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKT 191
+RR +G++ Q ++ E T +N+ +L G K E +LL L +L ++
Sbjct: 63 KVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-GEAADRP 121
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
G S G +R+ +A +L ++P+VL LDEPT+ LDP + + I D + LK++ G+TI++
Sbjct: 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLT 180
Query: 252 SHSIKQIQRIADVVCLLVNGEIV 274
+H +++ ++ D + ++ +G I+
Sbjct: 181 THYMEEADKLCDRIAIIDHGRII 203
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-32
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 6/193 (3%)
Query: 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143
++ + G I+ I+GPSG+GKSTLL + EP SG++ ++ + T L +R V ML
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75
Query: 144 FQIPALFEG-TVVDNIRYG--PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQA 200
FQ LF TV NI G P L+ + +V + +L++ ++S GQ
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-YLDRLPEQLSGGQR 134
Query: 201 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260
QRVALAR L +LLLDEP SALDP+ + + ++ +L + T++MV+H + +
Sbjct: 135 QRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA 194
Query: 261 IADVVCLLVNGEI 273
IA + ++ G+I
Sbjct: 195 IASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-32
Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 10/209 (4%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+L ++++IP G ++ ++GPSGSGK+TLLR + L SG + G D++ L + R
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH--ARDR 74
Query: 139 KVGMLFQIPALFEG-TVVDNIRYG----PQLR--GKKLTENEVYKLLSLADLDSSFLNKT 191
KVG +FQ ALF TV DNI +G P+ + +V +LL + L + ++
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQL-AHLADRY 133
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
++S GQ QRVALAR LA EP++LLLDEP ALD + + L +L ++ T V V
Sbjct: 134 PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFV 193
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
+H ++ +AD V ++ G I + PD
Sbjct: 194 THDQEEAMEVADRVVVMSQGNIEQAGTPD 222
|
Length = 353 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 4e-32
Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 20/255 (7%)
Query: 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS 118
+ + K V +L K + +LKGV+++ G ++ IIG SGSGKST LR +N L +P
Sbjct: 1 MSENKLNVIDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE 59
Query: 119 GTVFLDGRDIT---DLD----------VLSLRRKVGMLFQIPALFEG-TVVDNIRYGP-Q 163
G++ ++G+ I D D + LR ++ M+FQ L+ TV++N+ P Q
Sbjct: 60 GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 119
Query: 164 LRG--KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221
+ G K+ K L+ +D K +S GQ QRV++AR LA EPEVLL DEP
Sbjct: 120 VLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEP 179
Query: 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD- 280
TSALDP + ++ +L ++ G T+V+V+H + + ++ V L G+I E P+
Sbjct: 180 TSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQ 238
Query: 281 LLSEAKHPMALRFLQ 295
L + P +FL+
Sbjct: 239 LFGNPQSPRLQQFLK 253
|
Length = 257 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 4e-32
Identities = 68/217 (31%), Positives = 119/217 (54%), Gaps = 6/217 (2%)
Query: 70 RKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129
+ + D L V+ + +G + IIG +GSGKST +R ++ L E SG + +DG +T
Sbjct: 13 KYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLT 72
Query: 130 DLDVLSLRRKVGMLFQIP-ALFEG-TVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDS 185
+ +V +R K+GM+FQ P F G TV D++ +G + +G E V + L L +
Sbjct: 73 EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGM-Q 131
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
F + +S GQ QRVA+A +A P++++LDE TS LDP + + ++ +
Sbjct: 132 DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ 191
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
MT++ ++H + ++ ++D V ++ NG++ P L
Sbjct: 192 MTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-32
Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV----FLDGRDITDLDVL 134
L ++ K I IIG SGSGKSTL+ N L + GT+ G + +++
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 135 S------------LRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENEVYKL--- 177
+ LRR+V M+FQ P LF+ T+ +I +GP G K ++E KL
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK--KSEAKKLAKF 158
Query: 178 -LSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236
L+ LD S+L ++ +S GQ +RVA+A LA +PE+L+ DEPT+ LDP +
Sbjct: 159 YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ- 217
Query: 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
L+ K + T+ +++H+++ + +AD V ++ G+I++ P
Sbjct: 218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 9e-32
Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 12/209 (5%)
Query: 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL-DGR---DITDLDVLSLR 137
+++I +G I ++G SGSGKSTLLRA+N L G+V + DG D+ + D +LR
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 138 R----KVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNK 190
R +V M+FQ AL TV +N+ +G +++G K V + L L L + + ++
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGL-AQWADR 160
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
GE+S G QRV LAR A E +LL+DEP SALDP+ ++D L++L+ K TIV
Sbjct: 161 KPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVF 220
Query: 251 VSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
VSH + + +I + + ++ G I++ P
Sbjct: 221 VSHDLDEALKIGNRIAIMEGGRIIQHGTP 249
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-31
Identities = 78/211 (36%), Positives = 117/211 (55%), Gaps = 12/211 (5%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
I K +N++I +G + +GPSG GKSTLLR + L + SG +F+ + + D V
Sbjct: 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND--VP 71
Query: 135 SLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFL 188
R VGM+FQ AL+ +V +N+ +G +L G K E N+V ++L LA L L
Sbjct: 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL----L 127
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ +S GQ QRVA+ RTL EP V LLDEP S LD + + +L K+ G T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
+ V+H + +AD + +L G + +V KP
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218
|
Length = 369 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-31
Identities = 77/196 (39%), Positives = 111/196 (56%), Gaps = 10/196 (5%)
Query: 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143
++ + +G + I+GPSG+GKSTLL + P SG++ L+G+D T RR V ML
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP--PSRRPVSML 76
Query: 144 FQIPALFEG-TVVDNIRYG--PQLRGKKLTENEVYKLLSLADLDS--SFLNKTGGEISVG 198
FQ LF TV NI G P L KL + KL ++A L + G++S G
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGL---KLNAAQREKLHAIARQMGIEDLLARLPGQLSGG 133
Query: 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258
Q QRVALAR L E +LLLDEP SALDP Q + ++ ++ ++ +T++MVSHS++
Sbjct: 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA 193
Query: 259 QRIADVVCLLVNGEIV 274
RIA ++ +G I
Sbjct: 194 ARIAPRSLVVADGRIA 209
|
Length = 232 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-31
Identities = 77/218 (35%), Positives = 116/218 (53%), Gaps = 15/218 (6%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
IL +++ +P G I +IGP+G GKSTLL+ RL P SGTVFL + I+ L L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 138 RKVGMLFQIPALFEG-TVVDNIRYG--PQLR--GKKLTENEVYKLLSLADLD-SSFLNKT 191
R++ +L Q EG TV + + YG P L G+ E+ ++ + ++
Sbjct: 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR 135
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVM 250
++S GQ QR LA LA + V+LLDEPT+ LD I+ Q + ++ +L + G T+V
Sbjct: 136 LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-INHQVELMRLMRELNTQ-GKTVVT 193
Query: 251 VSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLL 282
V H + Q R D + +L NG ++ EV+ P LL
Sbjct: 194 VLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLL 231
|
Length = 255 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-31
Identities = 69/201 (34%), Positives = 111/201 (55%), Gaps = 16/201 (7%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----LDVLSLRR 138
+ +P + I G SGSGK+TL+R + L P G + L+GR + D + + +R
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 139 KVGMLFQIPALFEG-TVVDNIRYG-----PQLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
++G +FQ LF +V N+RYG P R +++ V +LL + L L +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSER--RISFERVIELLGIGHL----LGRLP 129
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
G +S G+ QRVA+ R L + P +LL+DEP +ALD I L +L + G+ I+ VS
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS 189
Query: 253 HSIKQIQRIADVVCLLVNGEI 273
HS++++ R+AD V +L +G +
Sbjct: 190 HSLQEVLRLADRVVVLEDGRV 210
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 3e-31
Identities = 74/215 (34%), Positives = 127/215 (59%), Gaps = 9/215 (4%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142
+N+ I +G ++ ++GPSG GK+T+LR + L +P G +F+DG D+T + +R + M
Sbjct: 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICM 82
Query: 143 LFQIPALF-EGTVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLNKTGGEISVGQ 199
+FQ ALF ++ +N+ YG ++ G E V + L L DL F ++ +IS GQ
Sbjct: 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQ 141
Query: 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259
QRVALAR L +P+VLL DEP S LD +++ + + +L+++ +T + V+H +
Sbjct: 142 QQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAF 201
Query: 260 RIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294
++D V ++ G+I+++ P L + P A RF+
Sbjct: 202 AVSDTVIVMNKGKIMQIGSPQELY--RQP-ASRFM 233
|
Length = 351 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 7e-31
Identities = 65/200 (32%), Positives = 114/200 (57%), Gaps = 10/200 (5%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
L GV++ + G+ G++GP+G+GK+TL+R L L P SGT+ +DG+D+ LRR
Sbjct: 15 ALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK-QPQKLRR 72
Query: 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKTGGEI 195
++G L Q ++ TV + + Y L+G K + V ++L L +L K G +
Sbjct: 73 RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL-GDRAKKKIGSL 131
Query: 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS-HS 254
S G +RV +A+ L +P +L++DEPT+ LDP ++L +L + IV++S H
Sbjct: 132 SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR---IVILSTHI 188
Query: 255 IKQIQRIADVVCLLVNGEIV 274
++ ++ + + V +L G++V
Sbjct: 189 VEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 7e-31
Identities = 67/208 (32%), Positives = 123/208 (59%), Gaps = 10/208 (4%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
D P+LKG++++I G + ++G +G GKSTLL+ L R W+P G + L+G+ I D
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE 409
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYG-PQLRGKKLTE--NEVYKLLSLADLD---SSF 187
+LR+ + ++ Q LF T+ DN+ P + L E +V L L + D +++
Sbjct: 410 AALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQV-GLEKLLEDDKGLNAW 468
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
L + G ++S G+ +R+ +AR L ++ +LLLDEPT LD + + I ++L + + T
Sbjct: 469 LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKT 526
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
++M++H + +++ D +C++ NG+I+E
Sbjct: 527 VLMITHRLTGLEQF-DRICVMDNGQIIE 553
|
Length = 574 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 8e-31
Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 37/198 (18%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
+LK +++E+ +G + ++G SGSGKSTLL+ L +P G + LDG ++DL+ +L
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEK-ALS 74
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197
+ +L Q P LF+ T+ +N+ G + G
Sbjct: 75 SLISVLNQRPYLFDTTLRNNL--GRRFSG------------------------------- 101
Query: 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257
G+ QR+ALAR L + ++LLDEPT LDPI+ + + ++ ++ K T++ ++H +
Sbjct: 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIWITHHLTG 159
Query: 258 IQRIADVVCLLVNGEIVE 275
I+ D + L NG+I+
Sbjct: 160 IEH-MDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-30
Identities = 82/243 (33%), Positives = 125/243 (51%), Gaps = 34/243 (13%)
Query: 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
V +L K + +LKGV+++ G ++ IIG SGSGKST LR +N L +P +G++
Sbjct: 5 NALEVEDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 122 FLDGRDI---TDLD----------VLSLRRKVGMLFQIPALFEG-TVVDNIRYGP-QLRG 166
++G +I D D + LR ++GM+FQ L+ TV++N+ P + G
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG 123
Query: 167 KKLTENEVYKLLSLADLDSSFLNKTG---------GEISVGQAQRVALARTLANEPEVLL 217
E + +L K G +S GQ QRVA+AR LA EPEV+L
Sbjct: 124 VSKAE--------AIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVML 175
Query: 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277
DEPTSALDP + V+ L ++ G T+V+V+H + + ++ V L G+I E
Sbjct: 176 FDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234
Query: 278 KPD 280
P+
Sbjct: 235 PPE 237
|
Length = 256 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-30
Identities = 78/234 (33%), Positives = 114/234 (48%), Gaps = 28/234 (11%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL- 136
I +++ +P+G I I+GPSG GK+TLLR + P G + DG +I + L
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 137 --RRKVGMLFQIPALF-EGTVVDNIRY---------GPQLRGKKLTENEVYKLLSLADLD 184
R+++ MLFQ ALF + V DN+ Y P L + + E L A L
Sbjct: 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM 140
Query: 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK----L 240
S E+S G A+R ALAR +A EP++++ DEP DPI+ VLVK L
Sbjct: 141 PS-------ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM----GVLVKLISEL 189
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294
G+T V+VSH + ++ IAD ++ + +IV L P +FL
Sbjct: 190 NSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQFL 243
|
Length = 269 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-30
Identities = 64/216 (29%), Positives = 112/216 (51%), Gaps = 27/216 (12%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT-----DLDVL 134
V++ + KG I ++G +G+GKSTL++ L L++P SG + +DG+++ D
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRD---- 75
Query: 135 SLRRKVGMLFQIPALFEG-TVVDNIRYG-----PQLRGKKLTENEVYKLLSLA---DLDS 185
++R +GM+ Q L TV +NI G L ++ + K LS +D
Sbjct: 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI-KELSERYGLPVD- 133
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK--KK 243
+ ++SVG+ QRV + + L +L+LDEPT+ L P Q +++ L+
Sbjct: 134 --PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP---QEADELFEILRRLAA 188
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
G TI+ ++H +K++ IAD V +L G++V + P
Sbjct: 189 EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP 224
|
Length = 501 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 2e-30
Identities = 79/209 (37%), Positives = 123/209 (58%), Gaps = 19/209 (9%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
LKGVN+ I +G + +IG SG GKSTLL ++ L +P SG V L+G+ IT+ R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP---GPDRM 57
Query: 140 VGMLFQIPALFEG-TVVDNI-----RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGG 193
V +FQ +L TV +NI R P L K V + ++L L + +K G
Sbjct: 58 V--VFQNYSLLPWLTVRENIALAVDRVLPDLS-KSERRAIVEEHIALVGLTEA-ADKRPG 113
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
++S G QRVA+AR L+ P+VLLLDEP ALD ++ N+++ L+++ ++H +T++MV+H
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
Query: 254 SIKQIQRIADVVCLLVN------GEIVEV 276
+ + ++D V +L N G+I+EV
Sbjct: 174 DVDEALLLSDRVVMLTNGPAANIGQILEV 202
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 72/209 (34%), Positives = 118/209 (56%), Gaps = 18/209 (8%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P L+ +N +IP G + ++G SGSGKST+ L R ++ G + LDG D+ D + SLR
Sbjct: 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR 416
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK------- 190
+V ++ Q LF T+ +NI Y R ++ + ++ + +A F+NK
Sbjct: 417 NQVALVSQNVHLFNDTIANNIAYA---RTEQYSREQIEEAARMAYA-MDFINKMDNGLDT 472
Query: 191 ----TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
G +S GQ QR+A+AR L + +L+LDE TSALD S + I+ L +L+K
Sbjct: 473 VIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR-- 530
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T ++++H + I++ AD + ++ +GEIVE
Sbjct: 531 TSLVIAHRLSTIEK-ADEILVVEDGEIVE 558
|
Length = 582 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 17/212 (8%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
D+ ++ V+ E G + I+GP+G+GKSTL+ L R+++P SG + +DG DI +
Sbjct: 345 DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR 404
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGG 193
SLRR + ++FQ LF ++ DNIR G T+ E+ A K G
Sbjct: 405 ASLRRNIAVVFQDAGLFNRSIEDNIRVGRP----DATDEEMRAAAERAQAHDFIERKPDG 460
Query: 194 ----------EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
++S G+ QR+A+AR L +P +L+LDE TSALD + ++ L +L
Sbjct: 461 YDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL--M 518
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
G T +++H + + R AD + + NG +VE
Sbjct: 519 KGRTTFIIAHRLSTV-RNADRILVFDNGRVVE 549
|
Length = 588 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-30
Identities = 66/204 (32%), Positives = 112/204 (54%), Gaps = 18/204 (8%)
Query: 68 ELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD 127
LRK+ +L +N+EI G I+ + GPSGSGK+TLL + L G++ + G++
Sbjct: 15 SLRKQ------VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQE 68
Query: 128 I---TDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLR---GKKLTENEVYKLLSL 180
+ ++ +++ LRR +G +FQ L T N++ +L+ + +L
Sbjct: 69 LYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEA 128
Query: 181 ADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
L L+ +S GQ QRVA+AR L + P+++L DEPT+ALD S +++ +++ KL
Sbjct: 129 VGLGDH-LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKL 187
Query: 241 KKKHGMTIVMVSHSIKQIQRIADV 264
++ G TI++V+H RI DV
Sbjct: 188 AREQGCTILIVTHD----NRILDV 207
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-30
Identities = 65/200 (32%), Positives = 117/200 (58%), Gaps = 6/200 (3%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
++ GV++ + +G I+G++GP+G+GK+T + L +P SG + LDG+DIT L +
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRA 73
Query: 138 RK-VGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKTGG 193
R +G L Q ++F TV +NI ++RG KK E ++ +LL +
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-RKSKAS 132
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+S G+ +RV +AR LA P+ LLLDEP + +DPI+ Q+I+ ++ LK + G+ +++ H
Sbjct: 133 SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDH 191
Query: 254 SIKQIQRIADVVCLLVNGEI 273
++++ I D ++ G++
Sbjct: 192 NVRETLSITDRAYIIYEGKV 211
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-30
Identities = 83/238 (34%), Positives = 135/238 (56%), Gaps = 10/238 (4%)
Query: 57 NQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP 116
N+I + + V + KESD L GV+ I KG + IIG +GSGKST R ++ L+E
Sbjct: 2 NKILEVENLVFKYEKESDVNQ--LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE 59
Query: 117 PSGTVFLDGRDITDLDVLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRG---KKLTE 171
G V +DG +T +V +LRRK+GM+FQ P TV D++ +G + +G +++ +
Sbjct: 60 FEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK 119
Query: 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
LL++ LD F + +S GQ QRVA+A +A PE+++LDE TS LDP Q
Sbjct: 120 RVDEALLAVNMLD--FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289
I V+ ++K+K+ +T++ ++H + + +D + ++ GEI++ P L M
Sbjct: 178 EIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSEDM 234
|
Length = 277 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-29
Identities = 68/209 (32%), Positives = 116/209 (55%), Gaps = 5/209 (2%)
Query: 70 RKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129
E L VN+E+ KG + I+G +GSGKST+ + +N L P G V++DG D +
Sbjct: 16 SNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTS 75
Query: 130 DL-DVLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS 186
D ++ +R K GM+FQ P + V +++ +GP+ G E SL +
Sbjct: 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY 135
Query: 187 FLNKTGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
+ +S GQ QRVA+A LA PE ++ DEPT+ LDP + + + + +L KK+G
Sbjct: 136 EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG 195
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
+TI++++H +++ AD + ++ +G++V
Sbjct: 196 ITIILITHYMEEAVE-ADRIIVMDSGKVV 223
|
Length = 280 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-29
Identities = 76/214 (35%), Positives = 125/214 (58%), Gaps = 11/214 (5%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP---PSGTVFLDGRDITD 130
D P L ++ IP+G +IG +GSGKST+ + +N L P P+ + +DG +T
Sbjct: 17 DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA 76
Query: 131 LDVLSLRRKVGMLFQIP-ALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLS--LADLD-S 185
V +R KVG++FQ P F G TV D++ +G L + + E+ K++ LAD+
Sbjct: 77 KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG--LENRAVPRPEMIKIVRDVLADVGML 134
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
+++ +S GQ QRVA+A LA EP++++LDE TS LDP + I ++ KLKKK+
Sbjct: 135 DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN 194
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
+T++ ++H I + +AD V +L +G+++ P
Sbjct: 195 LTVISITHDIDEAN-MADQVLVLDDGKLLAQGSP 227
|
Length = 282 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-29
Identities = 57/198 (28%), Positives = 109/198 (55%), Gaps = 9/198 (4%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
+ ++ E+P G I G++GP+G+GK+T R + L EP G + +G ++ + +
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI----KNR 73
Query: 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLNKTGGEIS 196
+G L + L+ TV D ++Y +L+G E ++ L ++ K E+S
Sbjct: 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI-VGKKTKKIKELS 132
Query: 197 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
G Q++ + +EPE+L+LDEP S LDP++ + ++D + +LK++ G TI+ SH ++
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRME 191
Query: 257 QIQRIADVVCLLVNGEIV 274
++ + D + +L G+ V
Sbjct: 192 HVEELCDRLLMLKKGQTV 209
|
Length = 300 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-29
Identities = 65/219 (29%), Positives = 116/219 (52%), Gaps = 7/219 (3%)
Query: 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG 119
L K S ++ V++E+ G I+G++GP+G+GK+T + L P SG
Sbjct: 1 DMSTLVAENLAK-SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 120 TVFLDGRDITDLDV-LSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKL 177
+ LD DIT L + R +G L Q ++F TV DNI ++R K L + E +
Sbjct: 60 KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119
Query: 178 LS--LADLD-SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234
L L + + + +S G+ +RV +AR LA P+ +LLDEP + +DPI+ +I+
Sbjct: 120 LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179
Query: 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
++ LK + G+ +++ H++++ I D ++ +G++
Sbjct: 180 RIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKV 217
|
Length = 243 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 3e-29
Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 42/212 (19%)
Query: 70 RKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN--RLWEPPSGTVFLDGRD 127
S G +LK V+ + G + I+GPSG+GKSTLL AL R SG V ++GR
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 128 ITDLDVLSLRRKVGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADL 183
+ S R+ +G + Q P L TV + + + +LRG
Sbjct: 75 LDKR---SFRKIIGYVPQDDILHPTL---TVRETLMFAAKLRG----------------- 111
Query: 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
+S G+ +RV++A L + P +L LDEPTS LD S + +L +L
Sbjct: 112 -----------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT 160
Query: 244 HGMTIVMVSHSIK-QIQRIADVVCLLVNGEIV 274
G TI+ H +I + D + LL G ++
Sbjct: 161 -GRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-29
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 10/197 (5%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----LDVLSLRR 138
N +P I + GPSGSGK++L+ + L P G + L+GR + D + + +R
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197
++G +FQ LF TV N+RYG + + +++ LL + L L++ G +S
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMW-KSMRAQFDQLVALLGIEHL----LDRYPGTLSG 131
Query: 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257
G+ QRVA+ R L PE+LL+DEP ++LD + I L +L+ + + I+ VSHS+ +
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191
Query: 258 IQRIADVVCLLVNGEIV 274
+ R+AD V +L NG++
Sbjct: 192 VLRLADRVVVLENGKVK 208
|
Length = 352 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-29
Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 24/206 (11%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P+LK V+ ++ G +GI+G +G+GKSTL+ AL R E G + +DG DI+ + + LR
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 138 RKVGMLFQIPALFEGTVVDNI-RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE-I 195
+ ++ Q P LF GT+ N+ + + ++ E+Y L + GG +
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNLDPFD------EYSDEEIYGALRV---------SEGGLNL 126
Query: 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255
S GQ Q + LAR L P VL+LDE T+++D + I+ + + TI+ ++H
Sbjct: 127 SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTIAH-- 182
Query: 256 KQIQRIADVVCLLV--NGEIVEVLKP 279
+++ I D +LV GE+ E P
Sbjct: 183 -RLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 9e-29
Identities = 70/211 (33%), Positives = 120/211 (56%), Gaps = 13/211 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVFLDGRDITDL----DVL 134
L ++ K + +IG +GSGKST+++ N L +G T+ D +L +V
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENEVYK----LLSLADLDSSFL 188
LR+++G++FQ P LF+ T+ +I +GP G+ + E YK LL L L ++
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN--KQEAYKKVPELLKLVQLPEDYV 144
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ E+S GQ +RVALA +A + L+LDEPT LDP ++ ++ +L K++ I
Sbjct: 145 KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRI 204
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
+MV+H++ Q+ RIAD V ++ G+++ + P
Sbjct: 205 IMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
Length = 289 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-28
Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 21/235 (8%)
Query: 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS 118
K F+ L K L G+++EI +G + +IG +G+GKSTLL A+ +P S
Sbjct: 7 ATKTFFKGTPLEK------RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60
Query: 119 GTVFLDGRDITDLDVLSLRRKVGMLFQIPAL---FEGTVVDNIRYGPQLRGKK----LTE 171
G + +DG D+T V + +FQ P E T+ +N+ + RGKK
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA-ESRGKKRGLSSAL 119
Query: 172 NEVYK---LLSLADLDSSFLNKTGGEI---SVGQAQRVALARTLANEPEVLLLDEPTSAL 225
NE + LA L N+ I S GQ Q ++L + P++LLLDE T+AL
Sbjct: 120 NERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAAL 179
Query: 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKP 279
DP + + + ++ K+ ++H +T +MV+H+++ + + +L +G+IV +V
Sbjct: 180 DPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234
|
Length = 263 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 24/242 (9%)
Query: 49 GEAEAEDDNQIQKPKFRVR-ELRK----ESDDGAPILKGVNMEIPKGVIMGIIGPSGSGK 103
E EA P+ ELR S P+++ ++ + G + ++G SGSGK
Sbjct: 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGK 518
Query: 104 STLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ 163
ST+ + + L++P SG + DG ++ L V M+ Q LFEGTV DN+
Sbjct: 519 STIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL----T 574
Query: 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGG----------EISVGQAQRVALARTLANEP 213
L + + ++ + A + ++ GG +S GQ QR+ +AR L P
Sbjct: 575 LWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634
Query: 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
+L+LDE TSALDP + + I+D L ++ G T ++V+H + I R D + +L G++
Sbjct: 635 SILILDEATSALDPETEKIIDDNL----RRRGCTCIIVAHRLSTI-RDCDEIIVLERGKV 689
Query: 274 VE 275
V+
Sbjct: 690 VQ 691
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-28
Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
DG P L+ +N+ I KG +GIIG +GSGKSTL LN L P G V + G D D L
Sbjct: 13 DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKL 72
Query: 135 -SLRRKVGMLFQIPAL-FEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLD---SSFL 188
+R+ VG++FQ P F G TV +++ +GP+ L E+ K + A + +
Sbjct: 73 QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPE--NLCLPPIEIRKRVDRALAEIGLEKYR 130
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH--GM 246
+++ +S GQ Q VALA L EPE L+ DE TS LDP S VL ++KK H G
Sbjct: 131 HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG---IAVLERIKKLHEKGK 187
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIV 274
TIV ++H+++++ AD + ++ G+IV
Sbjct: 188 TIVYITHNLEELH-DADRIIVMDRGKIV 214
|
Length = 274 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-28
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 104 STLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRKVGMLFQIPALF-EGTVVDNIRYG 161
STLL+ + L +P SGT+ LDG D T L LR+++G++FQ P LF E TV +N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221
K + + L L + G +S GQ QRVA+AR L +P++LLLDEP
Sbjct: 61 ---LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEP 117
Query: 222 TS 223
T+
Sbjct: 118 TA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 3e-28
Identities = 75/223 (33%), Positives = 113/223 (50%), Gaps = 15/223 (6%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
+L GV++ + +G ++G++GP+G+GK+TLLRA+N P +GTV + G D+ L +
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARA 74
Query: 136 LRRKVGMLFQIPAL-FEGTVVDNIRYG--PQL-RGKKLTENE---VYKLLSLADLDSSFL 188
R+V + Q +L FE V + G P R TE + V + + + F
Sbjct: 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFA 133
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ +S G+ QRV LAR LA VLLLDEPT++LD I+ Q LV+ G T
Sbjct: 134 DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD-INHQVRTLELVRRLVDDGKTA 192
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 285
V H + R D + LL +G + +VL D L A
Sbjct: 193 VAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAA 235
|
Length = 402 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-28
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 45/228 (19%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVFL 123
+++L ILKGVN+ I KG + ++GP+GSGKSTL + + + +E G +
Sbjct: 3 IKDLHVSVGGKE-ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF 61
Query: 124 DGRDITDLDV-LSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLA 181
G DITDL R + + FQ P G D +RY
Sbjct: 62 KGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY--------------------- 100
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
++ F +GGE +R + + L EP++ +LDEP S LD + + + +V+ KL+
Sbjct: 101 -VNEGF---SGGEK-----KRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR 151
Query: 242 KKHGMTIVMVSHSIKQIQRI-----ADVVCLLVNGEIVEVLKPDLLSE 284
++ G ++++++H QR+ D V +L +G IV+ +L E
Sbjct: 152 EE-GKSVLIITHY----QRLLDYIKPDRVHVLYDGRIVKSGDKELALE 194
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-28
Identities = 77/260 (29%), Positives = 136/260 (52%), Gaps = 17/260 (6%)
Query: 38 DEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKE--SDDGAPI--LKGVNMEIPKGVIM 93
DEV + E E E + ++ +P +VR + K S D + + V++E+ +G I
Sbjct: 254 DEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIF 313
Query: 94 GIIGPSGSGKSTLLRALNRLWEPPSGTVFL----DGRDITDLDVLS---LRRKVGMLFQI 146
GI+G SG+GK+TL + + + EP SG V + + D+T +R +G+L Q
Sbjct: 314 GIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373
Query: 147 PALF-EGTVVDNIR--YGPQLRGKKLTENEVYKLLSLA---DLDSSFLNKTGGEISVGQA 200
L+ TV+DN+ G +L + V L + + L+K E+S G+
Sbjct: 374 YDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433
Query: 201 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260
RVALA+ L EP +++LDEPT +DPI+ ++ ++K +++ T ++VSH + +
Sbjct: 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLD 493
Query: 261 IADVVCLLVNGEIVEVLKPD 280
+ D L+ +G+IV++ P+
Sbjct: 494 VCDRAALMRDGKIVKIGDPE 513
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-28
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 19/221 (8%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDV 133
+L +++EI G ++ +IG SG GK+TLLRA+ + +G + + RD+T
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP- 75
Query: 134 LSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEV-------YKLLSLADLDS 185
+R + +LFQ ALF V DN+ +G LR +K+ + ++ KL+ L D +
Sbjct: 76 -PHKRGLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGDAAA 132
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK-H 244
+ G G QR+A+AR +A EP+VLLLDEP SALD N+ + + L ++
Sbjct: 133 HLPAQLSG----GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELP 188
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285
+TI+ V+H +AD ++ +G + +P L +A
Sbjct: 189 ELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 7e-28
Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 10/226 (4%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLS 135
+L V++ + G + ++G SG GKSTL R L L P G V G + L+ +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 136 LRRKVGMLFQ--IPALFEGTVVDNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLN 189
RR + M+FQ I A+ V I P L + E ++L DLD S L+
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
K ++S GQ QRV LAR LA EP++L+LDE S LD + + +L KL+++ G +
Sbjct: 147 KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACL 206
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ 295
++H ++ ++R V ++ NG+IVE P A R LQ
Sbjct: 207 FITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSP-AGRVLQ 251
|
Length = 268 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 9e-28
Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 55 DDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114
K RK LK V+ E+P+G +G+IG +G+GKSTLLR L ++
Sbjct: 13 YKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72
Query: 115 EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE--- 171
P SGTV + GR + L +G F P L T +NI +L G E
Sbjct: 73 PPDSGTVTVRGRVSSLLG-------LGGGFN-PEL---TGRENIYLNGRLLGLSRKEIDE 121
Query: 172 --NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229
+E+ ++L F++ S G R+A A A EP++LL+DE + D +
Sbjct: 122 KIDEII---EFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA-A 176
Query: 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
Q ++ K G T+++VSH I+R+ D +L G+I
Sbjct: 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-27
Identities = 65/211 (30%), Positives = 114/211 (54%), Gaps = 11/211 (5%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
G P L+ +N+ + G ++ ++GPSG GK+TLL + G++ LDG+ +
Sbjct: 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP--- 68
Query: 135 SLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEV--YKLLSLADLDSSFLNKT 191
R G++FQ L V DN+ +G QL G + + +++L L+ +
Sbjct: 69 GAER--GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-AEKRY 125
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
++S GQ QRV +AR LA P++LLLDEP ALD + + ++ +L+KL ++ G ++++
Sbjct: 126 IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI 185
Query: 252 SHSIKQIQRIADVVCLLV--NGEIVEVLKPD 280
+H I++ +A + LL G +VE L +
Sbjct: 186 THDIEEAVFMATELVLLSPGPGRVVERLPLN 216
|
Length = 255 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-27
Identities = 66/218 (30%), Positives = 110/218 (50%), Gaps = 20/218 (9%)
Query: 70 RKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL-NRLWEPP--SGTVFLDGR 126
K + A IL V++ + G +M I+G SGSGK+TLL A+ R+ SG + +G+
Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72
Query: 127 DITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG---------KKLTENEVYK 176
++ V + Q L G TV + + Y LR KK E+ + +
Sbjct: 73 P---RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR 129
Query: 177 LLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236
L+L + + + IS G+ +RV++A L +P+VL+LDEPTS LD + N+
Sbjct: 130 DLALTRIGGNLV----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185
Query: 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
L +L +++ + I+ + + R+ D + LL +GEIV
Sbjct: 186 LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-27
Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 18/219 (8%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+ + + +EIP G IIGP+G GKSTLLR L+RL P G V+LDG I + R
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 139 KVGMLFQIPALFEGTV-----VDNIRYGPQ---LRGKKLTENEVYKLLSLADLDSSFLNK 190
++G+L Q A G + V RY Q R +K E V K + + + ++
Sbjct: 82 RIGLLAQ-NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI-THLADQ 139
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIV 249
+ +S GQ QR +A LA E ++LLDEPT+ LD IS Q ++ ++L +L ++ G T+
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD-ISHQIDLLELLSELNREKGYTLA 198
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLL 282
V H + Q R A + L G+IV E++ +L+
Sbjct: 199 AVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELI 237
|
Length = 265 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-27
Identities = 70/200 (35%), Positives = 107/200 (53%), Gaps = 19/200 (9%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+L +++ IP G + ++G SG GKSTLLR L L E PS L G L R
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL-ETPSAGELLAGT--APLA--EARE 81
Query: 139 KVGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE--- 194
++FQ L V+DN+ G L+G+ ++ +L L + L E
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLG--LKGQ-------WRDAALQALAAVGLADRANEWPA 132
Query: 195 -ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+S GQ QRVALAR L + P +LLLDEP ALD ++ ++D++ L ++HG T+++V+H
Sbjct: 133 ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTH 192
Query: 254 SIKQIQRIADVVCLLVNGEI 273
+ + +AD V L+ G+I
Sbjct: 193 DVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-27
Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 19/225 (8%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G +L GV++++ G ++ I+GP+G+GKSTLL+AL+ P SG V L+G +
Sbjct: 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE 72
Query: 136 LRRKVGMLFQIPAL-FEGTVVDNIRYG--PQLRGKKLTENE--VYKLLSLADLDSSFLNK 190
L R +L Q +L F TV + ++ G P G++ E+E + L+ DL S +
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL-SGLAGR 131
Query: 191 TGGEISVGQAQRVALARTLAN------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
+S G+ QRV LAR LA L LDEPTSALD + + +L ++
Sbjct: 132 DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE- 190
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLS 283
G ++ V H + + AD + LL G ++ +VL + L
Sbjct: 191 GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLE 235
|
Length = 259 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-26
Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 18/242 (7%)
Query: 44 LLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGK 103
L+ P + DD +Q + + + D +L+ +N+ +P + ++G +GSGK
Sbjct: 321 LMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGK 380
Query: 104 STLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ 163
STL L + G + LDGR ++ L LR+ V M+ Q P + T + N+
Sbjct: 381 STLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTL--- 437
Query: 164 LRGKKLTENEVYKLLS---LADLDSSF-------LNKTGGEISVGQAQRVALARTLANEP 213
G+ ++E +V++ L LA+L S L + G +SVGQ Q +ALAR L P
Sbjct: 438 --GRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495
Query: 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
++L+LDE T+ +D + Q I+ L +++ T+V+++H + I AD + +L G+
Sbjct: 496 QILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVE-ADTILVLHRGQA 552
Query: 274 VE 275
VE
Sbjct: 553 VE 554
|
Length = 592 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-26
Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L V+ + G + ++GP+G+GKSTL L RL+ G + + G D+ +L R
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR- 75
Query: 140 VGMLFQIPAL-FEGTVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKTGGEIS 196
+G++FQ P L + +V N+RY L G + + +LL+ L +K E++
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVR-ELN 134
Query: 197 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
G +RV +AR L + P +LLLDEPT LDP S I + L + G++++ +H +
Sbjct: 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVD 194
Query: 257 QIQRIADVVCL 267
+I+ +V L
Sbjct: 195 EIEADDRLVVL 205
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-26
Identities = 67/212 (31%), Positives = 113/212 (53%), Gaps = 29/212 (13%)
Query: 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--PPSGTVFLDGRDI 128
+ + LK +N+E+PKG ++ I+GP GSGKS+LL AL L E SG+V + G
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL--LGELEKLSGSVSVPGS-- 67
Query: 129 TDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSL-ADLDS-S 186
+ + Q P + GT+ +NI +G ++ +V K +L DL+
Sbjct: 68 -----------IAYVSQEPWIQNGTIRENILFGKPFDEERY--EKVIKACALEPDLEILP 114
Query: 187 FLNKTG-GE----ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKL 240
+ T GE +S GQ QR++LAR + ++ ++ LLD+P SA+D ++I E+ ++ L
Sbjct: 115 DGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGL 174
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272
+ T ++V+H + Q+ AD + +L NG
Sbjct: 175 LLNNK-TRILVTHQL-QLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 3e-26
Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 17/203 (8%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142
V+ E G + I+GP+G+GK+TL+ L R+++P G + +DG DI + SLR+ +
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413
Query: 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVY---KLLSLADLDSSFLN-------KTG 192
+FQ LF ++ +NIR G + T+ EVY K + D N + G
Sbjct: 414 VFQDAGLFNRSIRENIRLGRE----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERG 469
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S G+ QR+A+AR + +L+LDE TSALD + +++ + L+K T +++
Sbjct: 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNR--TTFIIA 527
Query: 253 HSIKQIQRIADVVCLLVNGEIVE 275
H + + R AD+V L G ++E
Sbjct: 528 HRLSTV-RNADLVLFLDQGRLIE 549
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-26
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 19/202 (9%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
LK ++ EI KG +GIIG +G+GKSTLL+ + +++P SG V + G
Sbjct: 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG------------ 88
Query: 138 RKVGMLFQIPALFEG--TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKTGG 193
KV L ++ A F+ T +NI + G +K + +V +++ A+L F+++
Sbjct: 89 -KVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELG-DFIDQPVK 146
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
S G R+A + EP++LLLDE + D + + L +L +K+ TIV+VSH
Sbjct: 147 TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK-TIVLVSH 205
Query: 254 SIKQIQRIADVVCLLVNGEIVE 275
+ I++ D L +G+I
Sbjct: 206 DLGAIKQYCDRAIWLEHGQIRM 227
|
Length = 249 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 8e-26
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 28/222 (12%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
K + K D G +LK ++ I +G + I+GP+G+GKSTLL+ L P SGT
Sbjct: 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGT 378
Query: 121 VFLDGRDITDLDVLSLRRKVGMLFQIP----ALFEG-TVVDNIRYGPQLRGKKLTENEVY 175
V + V + L TV++ + G E EV
Sbjct: 379 V-------------KVGETV-KIGYFDQHRDELDPDKTVLEELSEGFP----DGDEQEVR 420
Query: 176 KLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235
L K G +S G+ R+ LA+ L P +LLLDEPT+ LD S + +E+
Sbjct: 421 AYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE 480
Query: 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277
L G T+++VSH + R+A + LV ++ E
Sbjct: 481 A---LLDFEG-TVLLVSHDRYFLDRVATRI-WLVEDKVEEFE 517
|
Length = 530 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 9e-26
Identities = 79/239 (33%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
G I+ GV++ P G + G++GP+GSGKSTLLR L P +GTV L G D+ L
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 135 SLRRKVGMLFQ-IPALFEGTVVD-----NIRYGPQLRGKKLTENEVY-KLLSLADLDSSF 187
+ R+V ++ Q TV D I + G + V + L+ +L S
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL-SHL 130
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
++ +S G+ QRV +AR LA EP++LLLDEPT+ LD + Q LV+ G+T
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD-VRAQLETLALVRELAATGVT 189
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA--------KHPMALR 292
+V H + D V +L G +V EVL P L+ HP R
Sbjct: 190 VVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGVDATVLTHPDTGR 248
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 17/210 (8%)
Query: 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF 144
+ KG ++G++GP+G+GK+TLLRA+ L P GTV + G R +G +
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVP 55
Query: 145 Q-------IPALFEGTVVDNI--RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEI 195
Q P TV+ G R V L L + ++ GE+
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL-TELADRPVGEL 114
Query: 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255
S GQ QRV +AR LA P VLLLDEP + LD + + + ++ ++L G I+M +H +
Sbjct: 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMTTHDL 173
Query: 256 KQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285
Q D V LL NG ++ P L +
Sbjct: 174 AQAMATCDRVVLL-NGRVIADGTPQQLQDP 202
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 3e-25
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 12/166 (7%)
Query: 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR 126
+ +RK D ++KG+++++ G + ++GPSG GKSTLLR + L SG +++ GR
Sbjct: 7 QAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGR 66
Query: 127 DITDLDVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE-----NEVYKLLSL 180
+ +L+ R + M+FQ AL+ +V +N+ YG ++RG E E ++L L
Sbjct: 67 VVNELE--PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILEL 124
Query: 181 ADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226
L++ E+S GQ QRVA+ R + EP V L DEP S LD
Sbjct: 125 EP----LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-25
Identities = 64/205 (31%), Positives = 110/205 (53%), Gaps = 14/205 (6%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
LKG++ I KG I+G IGP+G+GK+T L+ L+ L +P SG V + G
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFL 93
Query: 138 RKVGMLF--------QIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN 189
R++G++F +P + + + Y K +E+ +LL L +L L+
Sbjct: 94 RRIGVVFGQKTQLWWDLPVI-DSFYLLAAIYDLPPARFKKRLDELSELLDLEEL----LD 148
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
++S+GQ R +A L +EPE+L LDEPT LD ++ +NI + L + ++ G T++
Sbjct: 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIV 274
+ SH +K I+ +A V ++ G ++
Sbjct: 209 LTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-25
Identities = 65/228 (28%), Positives = 119/228 (52%), Gaps = 17/228 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
+K V+ + +G + IIG +GSGKSTL + L + EP SG + ++ + D ++
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 140 VGMLFQIPA------LFEGTVVD-----NIRYGPQLRGKKLTENEVYKLLSLADLDSSFL 188
+ M+FQ P L G ++D N P+ R K+ +++ L + L
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQ-----IFETLRMVGLLPDHA 143
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
N ++ GQ QRVALAR L P++++ DE ++LD + +++++L++K G++
Sbjct: 144 NYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISY 203
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFLQ 295
+ V+ I I+ I+D V ++ GE+VE D+L+ H + R ++
Sbjct: 204 IYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIE 251
|
Length = 267 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 1e-24
Identities = 72/210 (34%), Positives = 121/210 (57%), Gaps = 8/210 (3%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
D + LK V+ IPKG I+G +GSGKST+ + + + + SG +F + + ITD +
Sbjct: 20 DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFE 79
Query: 135 SLRRKVGMLFQIPA-LFEGTVVD-NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
LR+ +G++FQ P F G++V ++ +G L + +E+++ +S A L +
Sbjct: 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFG--LENHAVPYDEMHRRVSEALKQVDMLERAD 137
Query: 193 GE---ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
E +S GQ QRVA+A LA P V++LDE TS LDP + QN+ D++ K+K +H +TI+
Sbjct: 138 YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITII 197
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
++H + + AD V ++ G + + P
Sbjct: 198 SITHDLSEAME-ADHVIVMNKGTVYKEGTP 226
|
Length = 269 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 41/259 (15%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVF 122
V+ L K+ D G +LK ++ I +G ++GI+G SG+GKS L+ L + +EP SG +
Sbjct: 2 EVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 123 ---------------------------------LDGRDITDLDVLSLRRKVGMLFQIP-A 148
+D +++D +R+++ ++ Q A
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 149 LF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD--SSFLNKTGGEISVGQAQRVAL 205
L+ + TV+DN+ + G + + V + + L ++ S + ++S G+ QRV L
Sbjct: 121 LYGDDTVLDNVLEALEEIGYE-GKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVL 179
Query: 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
AR LA EP + L DEPT LDP + + + + L + K G+++V+ SH + I+ ++D
Sbjct: 180 ARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239
Query: 266 CLLVNGEIVEVLKPDLLSE 284
L NGEI E PD +
Sbjct: 240 IWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 4e-24
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 15/213 (7%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
S DG L +++ + G + IIGP+G+GK+T++ + P G+V G D+T L
Sbjct: 11 SFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP 70
Query: 133 VLSL-RRKVGMLFQIPALFEG-TVVDNIRYG--------PQLRGKKLTE--NEVYKLLSL 180
+ R +G FQ P +FE TV +N+ L + E + + ++L
Sbjct: 71 EHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLET 130
Query: 181 ADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
L + ++ G +S GQ Q + + L +P++LLLDEP + + T+ ++L L
Sbjct: 131 IGL-ADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL 189
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
KH ++V+V H ++ ++ IAD V +L G +
Sbjct: 190 AGKH--SVVVVEHDMEFVRSIADKVTVLHQGSV 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-24
Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 34/228 (14%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125
+R ++ +LKG++++I G ++ I+G SGSGKSTL+ L L +P SGT + G
Sbjct: 10 IRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAG 69
Query: 126 RDITDLD---VLSLRRK-VGMLFQ---------------IPALFEGTVVDNIRYGPQLRG 166
+D+ LD + LRR+ G +FQ +PA++ G + +
Sbjct: 70 QDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGL---------ERKQ 120
Query: 167 KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226
+ L E+ + L L D + ++S GQ QRV++AR L N +V+L DEPT ALD
Sbjct: 121 RLLRAQELLQRLGLEDR----VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
S + + +L +L+ + G T+++V+H Q+ A+ V + +GEIV
Sbjct: 177 SHSGEEVMAILHQLRDR-GHTVIIVTHD-PQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 62/244 (25%), Positives = 119/244 (48%), Gaps = 22/244 (9%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
+ V +L + G +K V+ E+ G I+GI G +G+G+S L+ A++ L +P SG
Sbjct: 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314
Query: 121 VFLDGRDITDLDVLSLRRKVGMLFQIP------------ALFEGTVVDNIRYGPQLRGKK 168
+ L+G+D+ RR++G+ + +P +L E V+ P RG
Sbjct: 315 ILLNGKDVLGRLSPRERRRLGLAY-VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGF 373
Query: 169 LTENEVYKLLSLADLDSSFLNKTGGE------ISVGQAQRVALARTLANEPEVLLLDEPT 222
L + K +L F + +S G Q++ LAR LA P++L+ +PT
Sbjct: 374 LDRRAIRKF--ARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT 431
Query: 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
LD + + I + L++L+ G ++++S + +I ++D + ++ G IV ++ P+
Sbjct: 432 RGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490
Query: 283 SEAK 286
+ +
Sbjct: 491 TREE 494
|
Length = 501 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 8e-24
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 10/185 (5%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDL 131
G+ +L VN I KG I+ ++GPSG GKSTLL + +G ++L+ + + L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 132 DVLSLRRKVGMLFQIPALFEG-TVVDNIRYG--PQLRGKKLTENEVYKLLSLADLDSSFL 188
+ +R++G+LFQ LF +V N+ + L+G N L + LD +F
Sbjct: 73 P--AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNA-RRNAANAALERSGLDGAF- 128
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ +S GQ RVAL R L +P+ LLLDEP S LD + + G+
Sbjct: 129 HQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPT 188
Query: 249 VMVSH 253
V V+H
Sbjct: 189 VQVTH 193
|
Length = 213 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 1e-23
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 22/215 (10%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR-DITDLDV 133
G L ++ + G + +IGP+G+GK+TL+ + P G V DG D+T L
Sbjct: 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPE 75
Query: 134 LSL-RRKVGMLFQIPALFEG-TVVDNIRYG--------PQLRGKKLTE-----NEVYKLL 178
+ R +G FQ P +FE TV +N+ L + E +E+ +
Sbjct: 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI 135
Query: 179 SLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238
L D ++ +S GQ Q + + LA +P++LLLDEP + + T+ ++L
Sbjct: 136 GLGDE----RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLK 191
Query: 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
L KH +I++V H + ++ IAD V +L G +
Sbjct: 192 SLAGKH--SILVVEHDMGFVREIADKVTVLHEGSV 224
|
Length = 249 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 2e-23
Identities = 66/192 (34%), Positives = 104/192 (54%), Gaps = 12/192 (6%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS--- 135
+L V+ I +G +M I+G SGSGKSTLL L L P SG V +G+ ++ L +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 136 LR-RKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG- 192
LR +K+G ++Q L + T ++N+ P L GKK + L + L + L
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAM-PLLIGKKKPAEINSRALEM--LAAVGLEHRAN 140
Query: 193 ---GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
E+S G+ QRVA+AR L N P ++L DEPT LD + +I +L +L + G +
Sbjct: 141 HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFL 200
Query: 250 MVSHSIKQIQRI 261
+V+H ++ +R+
Sbjct: 201 VVTHDLQLAKRM 212
|
Length = 233 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 2e-23
Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 12/220 (5%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSL 136
L GV+ + +G + ++G SG GKSTL R L + P G ++ G+D+ D L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 137 RRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENE----VYKLLSLADLDSSFLNK 190
R+K+ ++FQ P +L V I P L L+ E +++ L ++
Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR 150
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIV 249
S GQ QR+A+AR L +P+V++ DEP SALD +S Q + ++++ L+++ G++ V
Sbjct: 151 YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD-VSVQAQVLNLMMDLQQELGLSYV 209
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHP 288
+SH + ++ IAD V ++ G VE K + + +HP
Sbjct: 210 FISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHP 249
|
Length = 327 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 3e-23
Identities = 74/230 (32%), Positives = 112/230 (48%), Gaps = 34/230 (14%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G +L +++ P G + G+IG +GSGKSTLL+ L R P G + LD + + +
Sbjct: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82
Query: 136 LRRKVGML-FQIPALFEGTVVDNI-------------RYGPQLRGKKLTENEVYKLLSLA 181
RKV L Q+PA EG V + R+G R K V + +SL
Sbjct: 83 FARKVAYLPQQLPAA-EGMTVRELVAIGRYPWHGALGRFGAADREK------VEEAISLV 135
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV--- 238
L ++ +S G+ QR +A +A + LLLDEPTSALD I+ Q DVL
Sbjct: 136 GL-KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD-IAHQ--VDVLALVH 191
Query: 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLL 282
+L ++ G+T++ V H I R D + L GE++ E+++ + L
Sbjct: 192 RLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETL 241
|
Length = 265 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 5e-23
Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 14/212 (6%)
Query: 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR--DITDLDVL 134
P+LKG+N++ + G++G +G GKSTL L+ L P G V G+ D + +L
Sbjct: 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLL 73
Query: 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENEVYK----LLSLADLDSSFL 188
+LR++V +FQ P +F + +I + LR + E E+ + L+L D F
Sbjct: 74 ALRQQVATVFQDPEQQIFYTDIDSDIAF--SLRNLGVPEAEITRRVDEALTLVDA-QHFR 130
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS-TQNIEDVLVKLKKKHGMT 247
++ +S GQ +RVA+A L + LLLDEPT+ LDP TQ I +++ G
Sbjct: 131 HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI--AIIRRIVAQGNH 188
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
+++ SH I I I+D V +L G+I+ P
Sbjct: 189 VIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 9e-23
Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L V+ E KG I+G +GP+G+GKST ++ + P SG+V + G D+ + ++R
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRN 76
Query: 140 VGMLFQIPALFEGTVV-DNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEIS 196
+G L + L+ V + +++ + G K L + V +++ L L K G ++S
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIG-QLS 135
Query: 197 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
G QRV LA+ L ++P+VL+LDEPT+ LDP I +V+ + K TI++ +H ++
Sbjct: 136 KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK--TIILSTHIMQ 193
Query: 257 QIQRIADVVCLLVNGEIV 274
+++ I D V ++ G+IV
Sbjct: 194 EVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 1e-22
Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 18/226 (7%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVFLDGRDITDLD 132
+ ILKGVN+ + KG I I+GP+GSGKSTL + + + +E SGT+ G+D+ +L+
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70
Query: 133 VLSLRRKVGML--FQIPALFEG-TVVDNIRYGPQLRGKKLTEN---------EVYKLLSL 180
R + G+ FQ P G + ++ +R R E + L+L
Sbjct: 71 P-DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129
Query: 181 ADLDSSFLNKTGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 239
+D FLN++ E S G+ +R + + EP++ +LDE S LD + + + + + +
Sbjct: 130 LGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINR 189
Query: 240 LKKKHGMTIVMVSHSIKQIQRIA-DVVCLLVNGEIVEVLKPDLLSE 284
L++ + ++++H + + I D V +L++G IV+ +L E
Sbjct: 190 LREPD-RSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 1e-22
Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 10/203 (4%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
R + K G L+GV + G + + G SG+GKSTLL+ + + P +G ++
Sbjct: 3 RFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFS 62
Query: 125 GRDITDL---DVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSL 180
G DIT L +V LRR++GM+FQ L + TV DN+ + G + +++ + +S
Sbjct: 63 GHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGA--SGDDIRRRVSA 120
Query: 181 ADLDSSFLNKTGG---EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237
A L+K ++S G+ QRV +AR + N+P VLL DEPT LD ++ I +
Sbjct: 121 ALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF 180
Query: 238 VKLKKKHGMTIVMVSHSIKQIQR 260
+ + G+T++M +H I I R
Sbjct: 181 EEFNRV-GVTVLMATHDIGLISR 202
|
Length = 222 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 2e-22
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 30/221 (13%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145
E+ G I+ ++GP+G+GKSTLL + L P SG++ G+ + L R L Q
Sbjct: 18 EVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQ 76
Query: 146 -IPALFEGTVVDNIRY-------GPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197
F + +Y + NEV + L L D L ++ ++S
Sbjct: 77 QQTPPF---AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDK----LGRSVNQLSG 129
Query: 198 GQAQRVALA-------RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
G+ QRV LA + ++LLLDEP ++LD ++ Q D L+ + G+ +VM
Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-VAQQAALDRLLSELCQQGIAVVM 188
Query: 251 VSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 285
SH + R AD V LL G+++ EVL P+ L++
Sbjct: 189 SSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQV 229
|
Length = 248 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 2e-22
Identities = 64/201 (31%), Positives = 111/201 (55%), Gaps = 7/201 (3%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI-TDLDVL 134
G P + +N+ + I +G +G+GK+T L L L P SGTV + G+DI T+LD +
Sbjct: 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAV 1001
Query: 135 SLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF-LNKTG 192
R+ +GM Q LF TV ++I + QL+G+ E ++ L D N+
Sbjct: 1002 --RQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA 1059
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
++S G +++++A + +V++LDEPTS +DP S ++I D+L LK + G TI+M +
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMST 1117
Query: 253 HSIKQIQRIADVVCLLVNGEI 273
H + + + D + ++ G +
Sbjct: 1118 HHMDEADLLGDRIAIISQGRL 1138
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 2e-22
Identities = 68/199 (34%), Positives = 113/199 (56%), Gaps = 14/199 (7%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSL---RR 138
VN+ +P I I G SG+GK++L+ A++ L P G + L+GR + D + + L +R
Sbjct: 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76
Query: 139 KVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSFLNKTGGEI 195
++G +FQ LF V N+RYG K + +++ LL + L L++ G +
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYG---MAKSMVAQFDKIVALLGIEPL----LDRYPGSL 129
Query: 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255
S G+ QRVA+ R L PE+LL+DEP ++LD + + L +L ++ + I+ VSHS+
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL 189
Query: 256 KQIQRIADVVCLLVNGEIV 274
+I R+AD V +L G++
Sbjct: 190 DEILRLADRVVVLEQGKVK 208
|
Length = 352 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 2e-22
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 13/212 (6%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
+G IL ++ ++ G I+GP+G+GK+TLL L P SG V L GR + +
Sbjct: 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101
Query: 135 S-LRRKVGML---FQIPALFEGTVVDNIRYG-------PQLRGKKLTENEVYKLLSLADL 183
LR+++G++ TV D + G Q LL L
Sbjct: 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGA 161
Query: 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK-K 242
++ G +S G+ +RV +AR L +PE+L+LDEP LD I+ + + + L +L
Sbjct: 162 -KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
++ V+H ++I LL GE+V
Sbjct: 221 PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 4e-22
Identities = 65/207 (31%), Positives = 114/207 (55%), Gaps = 11/207 (5%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLS 135
++K ++ + G +G++G SGSGKST AL RL G ++ DG+ + +L+ +L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 136 LRRKVGMLFQIP--ALFEG-TVVDNIRYGPQLRGKKLT----ENEVYKLLSLADLDSSFL 188
+R ++ ++FQ P +L V+ I G ++ L+ E +V ++ LD
Sbjct: 360 VRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETR 419
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ E S GQ QR+A+AR L +P +++LDEPTS+LD I +L L++KH +
Sbjct: 420 HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAY 479
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVE 275
+ +SH + ++ + V +L GE+VE
Sbjct: 480 LFISHDLHVVRALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 4e-22
Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 19/224 (8%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P+LK V I G +GI G +GSGKS+L A R+ + G + +DG DI+ L + +LR
Sbjct: 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SF 187
++ ++ Q P LF G++ N+ P+ K T++ +++ L +A L + +
Sbjct: 95 SRLSIILQDPILFSGSIRFNL--DPE---CKCTDDRLWEALEIAQLKNMVKSLPGGLDAV 149
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
+ + G SVGQ Q LAR + +L++DE T+++D ++T+NI +V + T
Sbjct: 150 VTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID-MATENILQKVV-MTAFADRT 207
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMA 290
+V ++H + I AD+V +L G +VE P +LL++ A
Sbjct: 208 VVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQEDGVFA 250
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (239), Expect = 4e-22
Identities = 58/158 (36%), Positives = 86/158 (54%), Gaps = 14/158 (8%)
Query: 118 SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKL 177
SG + LDG DI D ++ LR ++ Q P LF ++ +NI++G + T +V +
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE----DATREDVKRA 1331
Query: 178 LSLADLDS---SFLNKT-------GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227
A +D S NK G +S GQ QR+A+AR L EP++LLLDE TS+LD
Sbjct: 1332 CKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391
Query: 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
S + IE +V +K K TI+ ++H I I+R +V
Sbjct: 1392 NSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIV 1429
|
Length = 1466 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 5e-22
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 14/185 (7%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LS 135
IL GV + + +G + +IG SGSGKSTLL L L + SG V L G+ + +D
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 136 LR-RKVGMLFQ----IPALFEGTVVDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFL 188
LR + VG +FQ IP L ++N+ LRG+ + + N LL L L
Sbjct: 85 LRAKHVGFVFQSFMLIPTL---NALENVELPALLRGESSRQSRNGAKALLEQLGLGKR-L 140
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
+ ++S G+ QRVALAR P+VL DEPT LD + I D+L L ++HG T+
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTL 200
Query: 249 VMVSH 253
++V+H
Sbjct: 201 ILVTH 205
|
Length = 228 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 5e-22
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 46/220 (20%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
+P VR L ++ V+ E+ G I+GI G G+G++ L AL L P SG
Sbjct: 2 EPVLEVRGLS-----VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE 56
Query: 121 VFLDGRDITDLDVLSLRRKVGMLFQIP------ALFEG-TVVDNIRYGPQLRGKKLTENE 173
+ LDG+ +T R G+ + +P L +V +NI L G
Sbjct: 57 ITLDGKPVTRRSPRDAIRA-GIAY-VPEDRKREGLVLDLSVAENIALSSLLSG------- 107
Query: 174 VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233
G Q+V LAR LA +P VL+LDEPT +D + I
Sbjct: 108 ------------------------GNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI 143
Query: 234 EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
++ +L G ++++S + ++ + D + ++ G I
Sbjct: 144 YRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 7e-22
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 21/209 (10%)
Query: 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP----PSGTVFLDGRDITDLDVLSLR 137
+N+ + +G ++ ++G SGSGKS A+ L P SG + LDGR + L +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG-- 61
Query: 138 RKVGMLFQIP-----ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----- 187
R + + Q P LF T+ ++ + GK + L+ A
Sbjct: 62 RHIATIMQNPRTAFNPLF--TMGNHAIETLRSLGK--LSKQARALILEALEAVGLPDPEE 117
Query: 188 -LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
L K ++S G QRV +A L EP L+ DEPT+ LD ++ + +L +L++ G
Sbjct: 118 VLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGT 177
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
I++++H + + RIAD V ++ +G IVE
Sbjct: 178 GILLITHDLGVVARIADEVAVMDDGRIVE 206
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 9e-22
Identities = 64/221 (28%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK- 139
GV + + +G +G++G SG GKST RA+ L + G V G+D+ + R
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 140 --VGMLFQIP--ALFEGTVVDNI------RYGPQLRGKKLTENEVYKLLSLADLDSSFLN 189
+ M+FQ P +L + I Y P+L +++ + V ++ L + +N
Sbjct: 98 SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKD-RVKAMMLKVGLLPNLIN 156
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTI 248
+ E S GQ QR+ +AR L EP++++ DEP SALD +S Q + ++L +L+++ G+++
Sbjct: 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD-VSIQAQVVNLLQQLQREMGLSL 215
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEAKHP 288
+ ++H + ++ I+D V ++ G VE+ D + HP
Sbjct: 216 IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHP 256
|
Length = 331 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-21
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 10/181 (5%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G + G++ + G + + GP+GSGK+TLLR + L P +GT+ LDG DI D DV
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73
Query: 136 LRRKVGML-FQIPALFEGTVVDNIRYGPQLRGKKLTE-NEVYKLLSLADLDSSFLNKTGG 193
+G PAL TV +N+ + G + + + + LA L + G
Sbjct: 74 ACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAPL----AHLPFG 126
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+S GQ +RVALAR L + + +LDEPT+ALD + +++ + G+ ++ +H
Sbjct: 127 YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI-VIAATH 185
Query: 254 S 254
Sbjct: 186 I 186
|
Length = 207 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-21
Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 14/212 (6%)
Query: 70 RKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129
RKE A ++ ++ EIPKG I+G +G +G+GKST L+ L L P SG V ++G+D
Sbjct: 32 RKERSIEA--VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPF 89
Query: 130 DLDVLSLRR-------KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLAD 182
LR K+ + + +PAL V+ I P + L + D
Sbjct: 90 RRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPD----DEFAERLDFLTEILD 145
Query: 183 LDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
L+ FL ++S+GQ R LA L + P+VL LDEPT LD + NI + L + +
Sbjct: 146 LEG-FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE 204
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
+ T+++ +H I + D V L+ G++V
Sbjct: 205 ERQATVLLTTHIFDDIATLCDRVLLIDQGQLV 236
|
Length = 325 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 2e-21
Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 13/202 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L V++ I +G I+ +IG +G+GK+TLL L SG + DG+DITD + R+
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 140 VGMLFQIPALFEG-------TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
+ + EG TV +N+ G + + + + L +
Sbjct: 81 A-----VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRA 135
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
G +S G+ Q +A+ R L ++P +LLLDEP+ L PI Q I D + +L+++ GMTI +V
Sbjct: 136 GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVE 194
Query: 253 HSIKQIQRIADVVCLLVNGEIV 274
+ Q ++AD +L NG +V
Sbjct: 195 QNANQALKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 3e-21
Identities = 59/206 (28%), Positives = 114/206 (55%), Gaps = 13/206 (6%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-VLSLRR 138
LK VN+ + G I ++G +G+GKSTL++ L+ + EP GT+ ++ + LD L+ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 139 KVGMLFQ-IPALFEGTVVDNIRYGPQLRGKKLTENEV-YK--------LLSLADLDSSFL 188
+G+++Q + + E TV++N+ G L K N + ++ +L L L
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-L 139
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ +S+ Q + +A+TL + +V+++DEPTS+L + ++ +L+K+ G I
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAI 198
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIV 274
V +SH + +I+RI D ++ +G V
Sbjct: 199 VYISHKLAEIRRICDRYTVMKDGSSV 224
|
Length = 510 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-21
Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 48/184 (26%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
+ DG +LK ++ EI G + I GPSG+GKS+L RAL LW SG +
Sbjct: 10 TPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI----------- 58
Query: 133 VLSLRRKVGMLF--QIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK 190
+ +LF Q P L GT+ + + Y P +LS
Sbjct: 59 --GMPEGEDLLFLPQRPYLPLGTLREQLIY-PW-----------DDVLSG---------- 94
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
G+ QR+A AR L ++P+ + LDE TSALD ED L +L K+ G+T++
Sbjct: 95 -------GEQQRLAFARLLLHKPKFVFLDEATSALDE----ESEDRLYQLLKELGITVIS 143
Query: 251 VSHS 254
V H
Sbjct: 144 VGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 6e-21
Identities = 64/213 (30%), Positives = 116/213 (54%), Gaps = 7/213 (3%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
++ G++ + G G++GP+G+GKST+ R + + P +G + + G + L+
Sbjct: 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112
Query: 136 LRRKVGMLFQIPAL-FEGTVVDN-IRYGPQLRGK-KLTENEVYKLLSLADLDSSFLNKTG 192
R ++G++ Q L E TV +N + +G + E + LL A L+S +
Sbjct: 113 -RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-ADARV 170
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
++S G +R+ LAR L N+P++L+LDEPT+ LDP + I + L L + G TI++ +
Sbjct: 171 SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTT 229
Query: 253 HSIKQIQRIADVVCLLVNG-EIVEVLKPDLLSE 284
H +++ +R+ D +C+L G +I E L+ E
Sbjct: 230 HFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262
|
Length = 340 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 9e-21
Identities = 69/224 (30%), Positives = 121/224 (54%), Gaps = 7/224 (3%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125
R + K D ++ G++ + +G G++GP+G+GK+T LR L L P +G++ L G
Sbjct: 10 FRNVEKRYGDKL-VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG 68
Query: 126 RDITDLDVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENE--VYKLLSLAD 182
+ + R++VG++ Q L + TV +N+ + G V LL A
Sbjct: 69 EPVPSRARHA-RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK 127
Query: 183 LDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
L++ K G E+S G +R+ LAR L N+P+VL+LDEPT+ LDP + + + L L
Sbjct: 128 LENKADAKVG-ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
+ G TI++ +H +++ +R+ D +C++ G + P L E++
Sbjct: 187 R-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESE 229
|
Length = 306 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 9e-21
Identities = 57/201 (28%), Positives = 109/201 (54%), Gaps = 20/201 (9%)
Query: 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141
VN+E+ + I+ +IGP+G+GK+T+ L ++P GT+ L G+ I L + R G
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM-G 81
Query: 142 ML--FQIPALF-EGTVVDNIRYGPQLRGKK-----LTENEVYKLLSLADLDS-------- 185
++ FQ LF E TV++N+ + K L + ++ LD
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141
Query: 186 ---SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
N+ G ++ GQ +R+ +AR + +PE+L+LDEP + L+P T+ +++++ +L+
Sbjct: 142 GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN 201
Query: 243 KHGMTIVMVSHSIKQIQRIAD 263
+H +T++++ H +K + I+D
Sbjct: 202 EHNVTVLLIEHDMKLVMGISD 222
|
Length = 255 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 5e-20
Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 6/209 (2%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142
+N+ I +G ++ +IG +GSGKSTL L L++P SG + LDG+ ++ + R+
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401
Query: 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR 202
+F LF+ + + PQL K L E+ SL D F N ++S GQ +R
Sbjct: 402 VFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSL--NDGRFSNL---KLSTGQKKR 456
Query: 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262
+AL L E ++L+LDE + DP + VL+ L K+ G TI +SH A
Sbjct: 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HA 515
Query: 263 DVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291
D + + NG++ E+ + A+ +A
Sbjct: 516 DRLLEMRNGQLSELTGEERDETARDAVAR 544
|
Length = 546 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 6e-20
Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 64/200 (32%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
+ G +LK +++ I G +G++G +G+GKSTLL+ + EP G V
Sbjct: 9 TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV----- 63
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
I Y QL G
Sbjct: 64 ------------------------KIGYFEQLSG-------------------------- 73
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
G+ R+ALA+ L P +LLLDEPT+ LD S + +E+ L + T+++VS
Sbjct: 74 -----GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPG----TVILVS 124
Query: 253 HSIKQIQRIADVVCLLVNGE 272
H + ++A + L +G+
Sbjct: 125 HDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 6e-20
Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 17/221 (7%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
P R + K G +LKG++ + G + ++G +G+GKSTL++ + + P SGT
Sbjct: 9 PPLLCARSISK-QYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGT 67
Query: 121 VFLDGRDITDLDVLSLRRKVGMLF--QIPALFEG-TVVDNIRYG---PQLRGKKLTENEV 174
+ + G L + ++G+ Q P LF +V +NI +G Q +K+ +
Sbjct: 68 LEIGGNPCARLTP-AKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ--- 123
Query: 175 YKLLSLADLDSSF-LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233
LA L L+ + G + V Q V + R L + +L+LDEPT++L P T+ +
Sbjct: 124 ----LLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL 179
Query: 234 EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
+ +L + G+ IV +SH + +I+++AD + ++ +G I
Sbjct: 180 FSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIA 219
|
Length = 510 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 7e-20
Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 27/257 (10%)
Query: 38 DEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIG 97
+ + D + + L + DG +L +N E+ G + I G
Sbjct: 367 EAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITG 426
Query: 98 PSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF--QIPALFEGTVV 155
SG+GK++LLRAL LW P G+ GR +S+ +LF Q P L +GT+
Sbjct: 427 ESGAGKTSLLRALAGLW--PWGS----GR-------ISMPADSALLFLPQRPYLPQGTLR 473
Query: 156 DNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSF--LNKTGGEISVGQAQRVALARTLAN 211
+ + Y P V + L DL ++ +S G+ QR+A AR L +
Sbjct: 474 EALCY-PNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLH 532
Query: 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH--GMTIVMVSHSIKQIQRIADVVCLLV 269
+P+ + LDE TSALD + ED L +L K+ T++ V H + + LL
Sbjct: 533 KPKWVFLDEATSALDEET----EDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588
Query: 270 NGEIVEVLKPDLLSEAK 286
+ + LKP L +
Sbjct: 589 DAG-GQNLKPPALPTER 604
|
Length = 604 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 9e-20
Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 18/218 (8%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+L+ +N+ I G +GI+G +G+GKS+L L R+ E G + +DG +I + + LR
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360
Query: 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS---------SFLN 189
K+ ++ Q P LF G++ N+ Q ++ EV+ L LA L +
Sbjct: 1361 KITIIPQDPVLFSGSLRMNLDPFSQ-----YSDEEVWWALELAHLKTFVSALPDKLDHEC 1415
Query: 190 KTGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
GGE +SVGQ Q V LAR L + ++L+LDE T+A+D + T N+ ++ + + T+
Sbjct: 1416 AEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD-LETDNLIQSTIRTQFED-CTV 1473
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
+ ++H + I V+ +L GE+ E P L + +
Sbjct: 1474 LTIAHRLNTIMDYTRVI-VLDKGEVAEFGAPSNLLQQR 1510
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 24/199 (12%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG-------RD 127
P+L+ V++ + G +G++G +G+GKSTLL+ L EP SG V
Sbjct: 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQ 73
Query: 128 ITDLD-VLSLRRKVGM----LFQIPALFEGTVVDNIRYGPQLRGK---KLTENEVYKLLS 179
LD ++ V L ++ A E +L + L E + + L +
Sbjct: 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEA 133
Query: 180 -----LADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234
L L ++ +S G +RVALAR L EP++LLLDEPT+ LD S + +E
Sbjct: 134 RAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLE 193
Query: 235 DVLVKLKKKHGMTIVMVSH 253
D L + T+++VSH
Sbjct: 194 DYLKRYPG----TVIVVSH 208
|
Length = 530 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-19
Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 50/254 (19%)
Query: 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130
K S + V+M + +G I G++G SGSGKS + +A+ + + + V D D
Sbjct: 14 KTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDD 72
Query: 131 LDVLSL----RRK-----VGMLFQIPALFEGTVVDNIRYGPQLR-GKKLTEN-------- 172
+D+L L RRK V M+FQ P + +D P R G++L +N
Sbjct: 73 IDLLRLSPRERRKLVGHNVSMIFQEPQ----SCLD-----PSERVGRQLIQNIPAWTYKG 123
Query: 173 -----------EVYKLLSLA------DLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215
+LL D+ S+ E++ G+ Q+V +A LAN+P +
Sbjct: 124 RWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY----ELTEGECQKVMIAIALANQPRL 179
Query: 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
L+ DEPT++++P + I +L +L + TI+++SH ++ I + AD + +L G+ VE
Sbjct: 180 LIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239
Query: 276 -VLKPDLLSEAKHP 288
+L++ HP
Sbjct: 240 SAPSEELVTMPHHP 253
|
Length = 330 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-19
Identities = 54/207 (26%), Positives = 106/207 (51%), Gaps = 16/207 (7%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
+K ++ + +G + IIG +GSGKSTL + L + EP SG + +D + D ++
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 140 VGMLFQIPA-----------LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL 188
+ M+FQ P+ + + + N P+ R E ++ + L L
Sbjct: 89 IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQR-----EKQIIETLRQVGLLPDHA 143
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
+ ++ GQ QR+ LAR L P+V++ DE ++LD + +++++L++K G++
Sbjct: 144 SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISY 203
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVE 275
+ V+ + ++ I+D V ++ GE+VE
Sbjct: 204 IYVTQHLGMMKHISDQVLVMHQGEVVE 230
|
Length = 267 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-19
Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 18/200 (9%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR-DITDL----- 131
P+LK V++ + G + + GPSG+GKSTLL++L + P SG + + DL
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 132 -DVLSLRRK-VGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTE--NEVYKLLSLADL 183
+VL +RRK +G + Q IP + + ++ + RG +LL+ ++
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRV---SALEVVAEPLLERGVPREAARARARELLARLNI 138
Query: 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
+ S G+ QRV +AR + +LLLDEPT++LD + Q + + L+ K
Sbjct: 139 PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE-LIAEAKA 197
Query: 244 HGMTIVMVSHSIKQIQRIAD 263
G ++ + H + + +AD
Sbjct: 198 RGAALIGIFHDEEVRELVAD 217
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 3e-19
Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 22/248 (8%)
Query: 50 EAEAEDDNQIQ-KPKFRVRELRKESDDGAPILKGVNMEIPK----------GVIMGIIGP 98
E E D + +P +VR L + +L V E+ G + ++G
Sbjct: 299 EPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGE 358
Query: 99 SGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSLRRKVGMLFQIPALF---EG 152
SGSGKST RAL RL E G + +G+ I L + +LRR + +FQ P
Sbjct: 359 SGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQ 418
Query: 153 TVVDNI----RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208
TV D+I R L GK V LL L + E S GQ QR+ +AR
Sbjct: 419 TVGDSIMEPLRVHGLLPGKAAAA-RVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARA 477
Query: 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268
LA P+V++ DE SALD I ++L+ L++ G+ + +SH + ++RI+ V ++
Sbjct: 478 LALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVM 537
Query: 269 VNGEIVEV 276
G+IVE+
Sbjct: 538 YLGQIVEI 545
|
Length = 623 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 4e-19
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 21/210 (10%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P L+ VN + G ++GI GP+GSGKSTLL + R ++ G + +T L + S R
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388
Query: 138 RKVGMLFQIPALFEGTVVDNIRYG-PQLRGKKLTENEVYKLLSLADLDSSFLN------- 189
++ ++ Q P LF TV +NI G P T+ E+ + LA + L
Sbjct: 389 SRLAVVSQTPFLFSDTVANNIALGRPD-----ATQQEIEHVARLASVHDDILRLPQGYDT 443
Query: 190 ---KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK-KHG 245
+ G +S GQ QR+++AR L E+L+LD+ SA+D + I L L++ G
Sbjct: 444 EVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI---LHNLRQWGEG 500
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T+++ +H + + A + ++ +G I +
Sbjct: 501 RTVIISAHRLSALTE-ASEILVMQHGHIAQ 529
|
Length = 569 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 4e-19
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 11/157 (7%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P+L G++ EI +GI+G +G+GKS++L AL R+ E G + +DG DI+ ++ LR
Sbjct: 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR 1312
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE-------NEVYKLLSLADLDSSFLNK 190
+ +G++ Q P LF GTV N+ + L E +V + SL LD+
Sbjct: 1313 KVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLG-LDAEVSE- 1370
Query: 191 TGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALD 226
GE SVGQ Q ++LAR L ++L+LDE T+A+D
Sbjct: 1371 -AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
|
Length = 1622 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 1e-18
Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 20/213 (9%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW---EPPSGTVFLDGRDITDL----- 131
L V++ I G ++ ++GPSGSGKSTLLR L+ L + + L GR +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 132 DVLSLRRKVGMLFQIPALFEG-TVVDNIRYG-----PQLRG-----KKLTENEVYKLLSL 180
D+ R G +FQ L +V++N+ G P R + + + L+
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 181 ADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
+ F ++ +S GQ QRVA+AR L + +V+L DEP ++LDP S + + D L +
Sbjct: 140 VGM-VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
+ G+T+V+ H + R + + L G +
Sbjct: 199 NQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 1e-18
Identities = 63/209 (30%), Positives = 113/209 (54%), Gaps = 6/209 (2%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
++ ++ I +G G++GP+G+GKST+ R L + P G + + G + L+ R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLA-RV 77
Query: 139 KVGMLFQIPAL-FEGTVVDNIR-YGPQLR-GKKLTENEVYKLLSLADLDSSFLNKTGGEI 195
+G++ Q L E TV +N+ +G + E + LL A L+S + +
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-ADVRVALL 136
Query: 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255
S G +R+ LAR L N+P++L+LDEPT+ LDP + I + L L + G TI++ +H +
Sbjct: 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFM 195
Query: 256 KQIQRIADVVCLLVNGEIVEVLKPDLLSE 284
++ +R+ D +C+L +G + +P L +
Sbjct: 196 EEAERLCDRLCVLESGRKIAEGRPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 39/266 (14%)
Query: 47 VPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTL 106
V + + + F RK +LK V+ G ++ ++G SG+GK+TL
Sbjct: 14 VAQDGSWKQLVSRLRGCFCRERPRKH------LLKNVSGVAKPGELLAVMGSSGAGKTTL 67
Query: 107 LRAL-NRLWEPP----SGTVFLDGRDITDLDVLSLRRKVGMLFQ----IPALFEGTVVDN 157
+ AL R P SG+V L+G I D +R + Q IP L TV ++
Sbjct: 68 MNALAFRS--PKGVKGSGSVLLNGMPI---DAKEMRAISAYVQQDDLFIPTL---TVREH 119
Query: 158 IRYGPQLR--------GKKLTENEVYKLLSLADLDSSFLNKTGGE--ISVGQAQRVALAR 207
+ + LR K+ +EV + L L ++ + G +S G+ +R+A A
Sbjct: 120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFAS 179
Query: 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVC 266
L +P +L DEPTS LD ++ VL L +K G TI+ H ++ + D +
Sbjct: 180 ELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKII 238
Query: 267 LLVNGEIVEVLKP----DLLSEAKHP 288
L+ G + + P S+ HP
Sbjct: 239 LMAEGRVAYLGSPDQAVPFFSDLGHP 264
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (210), Expect = 3e-18
Identities = 63/220 (28%), Positives = 114/220 (51%), Gaps = 25/220 (11%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P+L G++ + +G++G +G+GKS++L AL R+ E G + +D D+ + LR
Sbjct: 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTEN---EVYKLLSLADLDSSFLNKT--- 191
R + ++ Q P LF GTV NI +E+ ++++ L A +
Sbjct: 1310 RVLSIIPQSPVLFSGTVRFNI--------DPFSEHNDADLWEALERAHIKDVIDRNPFGL 1361
Query: 192 ------GGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
GGE SVGQ Q ++LAR L ++L+LDE T+++D + I+ + + K
Sbjct: 1362 DAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS- 1420
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLS 283
T+++++H + I D + +L +G+++E P +LLS
Sbjct: 1421 -CTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLS 1458
|
Length = 1495 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 6e-18
Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 34/234 (14%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRAL----NRLWEPPSGTVFLDGRDITDLDVLSL-- 136
V+M + +G I G++G SGSGKS + +A+ W V D D+D+L L
Sbjct: 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWR-----VTADRMRFDDIDLLRLSP 80
Query: 137 --RRK-----VGMLFQIP-------ALFEGTVVDNI-------RYGPQLRGKKLTENEVY 175
RRK V M+FQ P ++ NI R+ + +K E+
Sbjct: 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELL 140
Query: 176 KLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235
+ + D + E++ G+ Q+V +A LAN+P +L+ DEPT+A++P + I
Sbjct: 141 HRVGIKD-HKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR 199
Query: 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHP 288
+L +L + + TI+++SH ++ + + AD + +L G+ VE +L++ HP
Sbjct: 200 LLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHP 253
|
Length = 330 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 6e-18
Identities = 57/213 (26%), Positives = 113/213 (53%), Gaps = 13/213 (6%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G +++ V++ + G I+G++GP+G+GK+T + + +G + +D DI+ L + +
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 136 -LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTE------NEVYKLLSLADLDSSF 187
RR +G L Q ++F +V DN+ Q+R E NE+ + + L S
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM 134
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
G +S G+ +RV +AR LA P+ +LLDEP + +DPIS +I+ ++ L + G+
Sbjct: 135 ----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL-RDSGLG 189
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
+++ H++++ + + ++ G ++ P
Sbjct: 190 VLITDHNVRETLAVCERAYIVSQGHLIAHGTPT 222
|
Length = 241 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 8e-18
Identities = 61/212 (28%), Positives = 115/212 (54%), Gaps = 15/212 (7%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT----VFLDGRDITD 130
G L G+++E+ G +G+ G +G+GKSTL++ L+ ++ P GT ++ G +
Sbjct: 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY--PHGTWDGEIYWSGSPLKA 69
Query: 131 LDVLSLRRK-VGMLFQIPALF-EGTVVDNIRYGPQ--LRGKKLTENEVY----KLLSLAD 182
++ R + ++ Q L E +V +NI G + L G ++ N +Y LL
Sbjct: 70 SNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQ 129
Query: 183 LDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
LD+ + + G+ GQ Q V +A+ L + +L+LDEP+S+L T+ + D++ L K
Sbjct: 130 LDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-K 188
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
HG+ V +SH + +++ + D +C++ +G+ V
Sbjct: 189 AHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 9e-18
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
+ ++ + G + I GP+G+GK+TLLR L L P +G V+ G I +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-VRE 71
Query: 135 SLRRKVGMLFQIPAL-FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGG 193
S + + L P + E T ++N+ + + G +++ L+ L + G
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHG-SGNAATIWEALAQVGLA-GLEDLPVG 129
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
++S GQ +RVALAR + + +LDEP +ALD + ++ + G+ +++ +H
Sbjct: 130 QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGI-VLLTTH 188
|
Length = 209 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-17
Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 20/201 (9%)
Query: 75 DGAP-ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
+G P +L+GV+ I +GI+G +GSGKSTLL R+ E G + ++GR+I +
Sbjct: 1320 EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL 1379
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADL---------- 183
LRR+ M+ Q P LF+GTV N+ P L + EV+ L L L
Sbjct: 1380 RELRRQFSMIPQDPVLFDGTVRQNV--DPFLEA---SSAEVWAALELVGLRERVASESEG 1434
Query: 184 -DSSFLNKTGGEISVGQAQRVALARTLANEPE-VLLLDEPTSALDPISTQNIEDVLVKLK 241
DS L + G SVGQ Q + +AR L + +L+DE T+ +DP + I+ ++
Sbjct: 1435 IDSRVL-EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF 1493
Query: 242 KKHG-MTIVMVSHSIKQIQRI 261
+ +TI H++ Q +I
Sbjct: 1494 SAYTVITIAHRLHTVAQYDKI 1514
|
Length = 1560 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-17
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 38/227 (16%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
GAP+LK +N++I KG ++ I G +GSGK++LL + EP G + GR
Sbjct: 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR--------- 99
Query: 136 LRRKVGMLFQIPALFEGTVVDNI---------RYGPQLRGKKLTENEVYKLLSLADLDSS 186
+ Q + GT+ +NI RY ++ +L E+ + + D++
Sbjct: 100 ----ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED----ITKFPEKDNT 151
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHG 245
L + G +S GQ R++LAR + + ++ LLD P LD + + I E + KL
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANK- 210
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
T ++V+ ++ + + AD + +L G ++ L+PD S+
Sbjct: 211 -TRILVTSKMEHL-KKADKILILHEGSSYFYGTFSELQSLRPDFSSK 255
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-17
Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 23/247 (9%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
KP +V L K S G + V+ ++ G ++GI+G SGSGKSTLL L P GT
Sbjct: 1 KPLLQVSGLSK-SYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT 59
Query: 121 VFLDGRDITDLDVLSL----RRKV-----GMLFQIPALFEGTVVD-----NIRYGPQLRG 166
R +L++ L RR++ G + Q P +G + NI G
Sbjct: 60 ATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR--DGLRMRVSAGANIGERLMAIG 117
Query: 167 KKLTEN---EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS 223
+ N L ++D + ++ S G QR+ +AR L P ++ +DEPT
Sbjct: 118 ARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTG 177
Query: 224 ALDPISTQ-NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDL 281
LD +S Q + D+L L + G+ +++V+H + + +A + ++ G +VE L +
Sbjct: 178 GLD-VSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV 236
Query: 282 LSEAKHP 288
L + +HP
Sbjct: 237 LDDPQHP 243
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 6e-17
Identities = 59/223 (26%), Positives = 119/223 (53%), Gaps = 15/223 (6%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT----VFLDGRDITD 130
G L V++++ G I+ + G +G+GKSTL++ L+ ++ P GT + +G ++
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY--PHGTYEGEIIFEGEELQA 73
Query: 131 LDVLSLRRK-VGMLFQIPALFEG-TVVDNIRYGPQL-RGKKLTENEVY----KLLSLADL 183
++ R + ++ Q AL + +V++NI G ++ G + + +Y KLL+ L
Sbjct: 74 SNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL 133
Query: 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
D + G + +GQ Q V +A+ L + +L+LDEPT++L T + D++ L K
Sbjct: 134 DINPATPVG-NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL-KA 191
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
HG+ + +SH + +++ I+D +C++ +G + ++E
Sbjct: 192 HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDD 234
|
Length = 506 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 4e-16
Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
D P L G+ IP+G ++ ++G G GKS+LL AL + G V + G
Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------- 699
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTEN-EVYKLLSLADL------DSSF 187
V + Q + ++ +NI +G L K + E L L DL D +
Sbjct: 700 ----SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACAL--LPDLEILPSGDRTE 753
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGM 246
+ + G +S GQ QRV+LAR + + ++ L D+P SA+D ++I E V+
Sbjct: 754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNK 813
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
T ++V+H I + ++ DV+ ++ G+I E+
Sbjct: 814 TRILVTHGISYLPQV-DVIIVMSGGKISEM 842
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-16
Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 31/237 (13%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPS 118
KP ++ L S + ILKG+N+ I KG I I+GP+GSGKSTL + + + ++
Sbjct: 5 KPILEIKNL-HASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE 63
Query: 119 GTVFLDGRDITDLDVLSLRRKVGML--FQIPALFEGTVVDNI---RYGPQLRGKKLTENE 173
G + G I DL+ R +G+ FQ P E V N R + K E
Sbjct: 64 GDILFKGESILDLEP-EERAHLGIFLAFQYP--IEIPGVSNADFLRLAYNSKRKFQGLPE 120
Query: 174 VYKL---------LSLADLDSSFLNKTGGE-ISVGQAQRVALARTLANEPEVLLLDEPTS 223
+ L L L +D SFL++ E S G+ +R + + + E+ +LDE S
Sbjct: 121 LDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDS 180
Query: 224 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR-----IADVVCLLVNGEIVE 275
LD + + I + + KL +I++++H QR D V ++ NG+I++
Sbjct: 181 GLDIDALKIIAEGINKLMTS-ENSIILITH----YQRLLDYIKPDYVHVMQNGKIIK 232
|
Length = 252 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 4e-16
Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 19/225 (8%)
Query: 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKS-TLLRALNRLWEPP---- 117
+ +R + ++ P++ GV++ + +G ++ ++G SGSGKS T AL L P
Sbjct: 4 QIELRNIALQAA--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL--PAGVRQ 59
Query: 118 -SGTVFLDGRDITDLDVLSLR-RKVGMLFQIP-ALFEG--TVVDNIRYGPQLRGKKLTEN 172
+G V LDG+ + +LR RK+ + Q P + F T+ + R GK +
Sbjct: 60 TAGRVLLDGKPVA---PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDA 116
Query: 173 EVYKLLSLADLDSS--FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 230
+ L L+++ L E+S G QR+ +A L E ++ DEPT+ LD ++
Sbjct: 117 TLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176
Query: 231 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
I D+L + +K + +++V+H + + R+AD V ++ +G IVE
Sbjct: 177 ARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221
|
Length = 254 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 5e-16
Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 44/248 (17%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKS-TLLRALNRLWEPP----SGTVFLDGRDITDLD 132
++ V+++I G + ++G SGSGKS T L L L PP SG + G +
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 133 VLSLRR----KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSL-------- 180
+LR K+ M+FQ P + L E ++Y++LSL
Sbjct: 83 EQTLRGVRGNKIAMIFQEPMV-------------SLNPLHTLEKQLYEVLSLHRGMRREA 129
Query: 181 ------ADLD-------SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227
LD + L ++S G+ QRV +A L PE+L+ DEPT+ALD
Sbjct: 130 ARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDV 189
Query: 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEAK 286
I +L +L+++ M ++ ++H++ ++++AD V ++ NG VE + L S
Sbjct: 190 SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPT 249
Query: 287 HPMALRFL 294
HP + L
Sbjct: 250 HPYTQKLL 257
|
Length = 529 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 5e-16
Identities = 63/236 (26%), Positives = 118/236 (50%), Gaps = 23/236 (9%)
Query: 74 DDGAPI--LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-----LDGR 126
D+ AP + ++ + +G ++GI+G SGSGKS A+ L + P G V +G+
Sbjct: 15 DESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQ 73
Query: 127 DITDLDVLSLRRKVG----MLFQIPAL---------FEGTVVDNIRYGPQLRGKKLTENE 173
D+ + R VG M+FQ P F+ + G + ++ +
Sbjct: 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAID 133
Query: 174 VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233
+ + + D +S L+ ++S G +QRV +A +A P++L+ DEPT+ALD I
Sbjct: 134 LLNQVGIPD-PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQI 192
Query: 234 EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHP 288
++L++L++K M +V+++H + + A + ++ G++VE K D+ +HP
Sbjct: 193 IELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHP 248
|
Length = 326 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 5e-16
Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 23/247 (9%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
KP V L K G + V+ ++ G ++GI+G SGSGK+TLL+ ++ P +GT
Sbjct: 4 KPLLSVSGLSKLYGPGKG-CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGT 62
Query: 121 VFLDGRDITDLDVLSL----RRKV-----GMLFQIPALFEGTVVD-----NIRYGPQLRG 166
V RD D+ ++ RR++ G + Q P +G + NI G
Sbjct: 63 VTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR--DGLRMQVSAGGNIGERLMAIG 120
Query: 167 KKLTEN---EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS 223
+ N E L ++D ++ S G QR+ +AR L P ++ +DEPT
Sbjct: 121 ARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTG 180
Query: 224 ALDPISTQ-NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDL 281
LD +S Q + D+L L ++ G+ +V+V+H + + +AD + ++ G++VE L +
Sbjct: 181 GLD-VSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239
Query: 282 LSEAKHP 288
L + HP
Sbjct: 240 LDDPHHP 246
|
Length = 258 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 6e-16
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
+ +G++ + G + + GP+G GK+TLLR L L P SG V +G + +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRD- 69
Query: 135 SLRRKVGMLFQIPAL-FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGG 193
R + L +P L E + ++N+ + + G + + L+ L F +
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHGG--AQRTIEDALAAVGLT-GFEDLPAA 126
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227
++S GQ +R+ALAR + + +LDEPT+ALD
Sbjct: 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 6e-16
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 21/227 (9%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145
E+ G I+ ++GP+G+GKSTLL + + SG++ G+ + L R L Q
Sbjct: 21 EVRAGEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFAGQPLEAWSATELARHRAYLSQ 79
Query: 146 -IPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204
F V + + + N+V L+L D L ++ ++S G+ QRV
Sbjct: 80 QQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDK----LGRSTNQLSGGEWQRVR 135
Query: 205 LARTL------AN-EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257
LA + AN ++LLLDEP ++LD ++ Q+ D L+ + G+ IVM SH +
Sbjct: 136 LAAVVLQITPDANPAGQLLLLDEPMNSLD-VAQQSALDRLLSALCQQGLAIVMSSHDLNH 194
Query: 258 IQRIADVVCLLVNGEIV------EVLKPDLLSEAKHPMALRFLQLSG 298
R A LL G+++ EVL P +L++A + M R L + G
Sbjct: 195 TLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQA-YGMNFRRLDIEG 240
|
Length = 248 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-15
Identities = 70/259 (27%), Positives = 118/259 (45%), Gaps = 47/259 (18%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
+P VR L K + V+ ++ G ++GI+G SGSGK+TLL AL+ P +G
Sbjct: 4 QPLLSVRGLTKLYGPRKG-CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE 62
Query: 121 VFLDGRDITDLDVLSL----RRKV-----GMLFQIPALFEGTVVDNIR------------ 159
V RD D+ +L RR++ G + Q P D +R
Sbjct: 63 VHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR-------DGLRMQVSAGGNIGER 115
Query: 160 --------YGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211
YG +R L ++D++ ++ S G QR+ +AR L
Sbjct: 116 LMAVGARHYG-DIRATAG------DWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVT 168
Query: 212 EPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270
P ++ +DEPT LD +S Q + D+L L ++ G+ +V+V+H + + +A + ++
Sbjct: 169 HPRLVFMDEPTGGLD-VSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQ 227
Query: 271 GEIVEV-LKPDLLSEAKHP 288
G +VE L +L + +HP
Sbjct: 228 GRVVESGLTDQVLDDPQHP 246
|
Length = 258 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 63/202 (31%), Positives = 95/202 (47%), Gaps = 17/202 (8%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
+ +N+ I +G ++ +IG +GSGKSTL L L++P SG + LDG+ +T R+
Sbjct: 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398
Query: 140 VGMLFQIPALF------EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGG 193
+F LF EG + L K+ L L D S L
Sbjct: 399 FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHK-----LELEDGRISNLK---- 449
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+S GQ +R+AL LA E ++LLLDE + DP + VL+ L ++ G TI +SH
Sbjct: 450 -LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508
Query: 254 SIKQIQRIADVVCLLVNGEIVE 275
AD + + NG++ E
Sbjct: 509 DDHYFIH-ADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-15
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 7/194 (3%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
DG + G++ + G + + GP+GSGK+TLLR L L P +G V L+G + D
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL-DFQRD 69
Query: 135 SLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGG 193
S+ R + L P + +V++N+R+ + +V + L+ L + F ++
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHADHS----DEQVEEALARVGL-NGFEDRPVA 124
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
++S GQ +RVALAR L + + +LDEPT+ALD + + + GM ++
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ 184
Query: 254 SIKQIQRIADVVCL 267
+ + A + L
Sbjct: 185 DLGLSEAGARELDL 198
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-15
Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 27/208 (12%)
Query: 66 VRELR-KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
V++L K ++ G +L+ ++ I G +G++G +GSGKSTLL A RL G + +D
Sbjct: 5 VKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGDIQID 63
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR-YGPQLRGKKLTENEVYKLLSLADL 183
G + + R+ G++ Q +F GT N+ YG K ++ E++K+ L
Sbjct: 64 GVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG------KWSDEEIWKVAEEVGL 117
Query: 184 DS---------SFLNKTGGEI-SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233
S F+ GG + S G Q + LAR++ ++ ++LLLDEP++ LDPI+ Q I
Sbjct: 118 KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI 177
Query: 234 EDVLVKLKKKH---GMTIVMVSHSIKQI 258
L K T+++ H I+ +
Sbjct: 178 RKTL-----KQAFADCTVILSEHRIEAM 200
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-15
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 30/206 (14%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
P+LK ++ ++ KG ++ + G +GSGKS+LL + EP G + GR
Sbjct: 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR--------- 488
Query: 136 LRRKVGMLFQIPALFEGTVVDNI---------RYGPQLRGKKLTENEVYKLLSLADLDSS 186
+ Q + GT+ DNI RY ++ +L E+ + + D +
Sbjct: 489 ----ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEED----IALFPEKDKT 540
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHG 245
L + G +S GQ R++LAR + + ++ LLD P + LD ++ + I E L KL
Sbjct: 541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNK- 599
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNG 271
T ++V+ ++ +++ AD + LL G
Sbjct: 600 -TRILVTSKLEHLKK-ADKILLLHEG 623
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 3e-15
Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPSGTVFLDGRDITDLDVLSL 136
P L +N+EIP G ++ I+G +G GK++L+ A+ L E + T + +
Sbjct: 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAM--LGELSHAETSSVV-----------I 677
Query: 137 RRKVGMLFQIPALFEGTVVDNIRYG----PQLRGKKLTENEVYKLLSL-ADLDSSFLNKT 191
R V + Q+ +F TV +NI +G + + + + L L D + + +
Sbjct: 678 RGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGER 737
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
G IS GQ QRV++AR + + ++ + D+P SALD + D +K + K G T V+V
Sbjct: 738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK-GKTRVLV 796
Query: 252 S---HSIKQIQRI 261
+ H + + RI
Sbjct: 797 TNQLHFLPLMDRI 809
|
Length = 1495 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 5e-15
Identities = 64/248 (25%), Positives = 111/248 (44%), Gaps = 26/248 (10%)
Query: 55 DDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114
+ I +P VR L G ++ V+ + G I+GI G G+G++ L RAL
Sbjct: 255 PEEGIGEPVLEVRNL-----SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR 309
Query: 115 EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIP------ALFEG-TVVDNI------RYG 161
SG + LDG+ + K G+ + +P L ++ +NI R+
Sbjct: 310 PASSGEILLDGKPVRIRSP-RDAIKAGIAY-VPEDRKSEGLVLDMSIAENITLASLRRFS 367
Query: 162 PQLRGKKLTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218
+ + E + + L S G +S G Q+V LAR LA +P+VL+L
Sbjct: 368 RRGLIDRRKERALAERYI-RRLRIKTPSPEQPIG-TLSGGNQQKVVLARWLATDPKVLIL 425
Query: 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278
DEPT +D + I ++ +L + G I+M+S + ++ ++D + ++ G IV L
Sbjct: 426 DEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELD 484
Query: 279 PDLLSEAK 286
+ +E
Sbjct: 485 REEATEEA 492
|
Length = 500 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 6e-15
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+L V++E+ G I+ ++GP+G+GKSTL+R + L P G + +G+ L + + +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK----LRIGYVPQ 74
Query: 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVG 198
K+ + +P TV +R P + + + K + L + + K G G
Sbjct: 75 KLYLDTTLPL----TVNRFLRLRPGTKKEDILP--ALKRVQAGHLIDAPMQKLSG----G 124
Query: 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258
+ QRV LAR L N P++L+LDEPT +D + D++ +L+++ ++MVSH + +
Sbjct: 125 ETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV 184
Query: 259 Q-RIADVVCLLVNGEIVEVLKPDLLSEAKHP 288
+ +V+CL N I P+++S HP
Sbjct: 185 MAKTDEVLCL--NHHICCSGTPEVVS--LHP 211
|
Length = 251 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 7e-15
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 24/198 (12%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-----LDGRDITD 130
G L +N+ IP G + I+G G GKS+LL A+ + G V
Sbjct: 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEA 72
Query: 131 LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLA-------DL 183
+ R V Q P L TV +NI +G ++ YK ++ A DL
Sbjct: 73 TRSRN-RYSVAYAAQKPWLLNATVEENITFGSPFNKQR------YKAVTDACSLQPDIDL 125
Query: 184 ----DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD-PISTQNIEDVLV 238
D + + + G +S GQ QR+ +AR L ++ LD+P SALD +S +++ ++
Sbjct: 126 LPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL 185
Query: 239 KLKKKHGMTIVMVSHSIK 256
K + T+V+V+H ++
Sbjct: 186 KFLQDDKRTLVLVTHKLQ 203
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 8e-15
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 33/216 (15%)
Query: 72 ESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL 131
+S P L +N+++P G ++ I+G +G GK++L+ A+ L E P +D
Sbjct: 625 DSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAM--LGELPP---------RSDA 673
Query: 132 DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLA-DLDS----- 185
V+ +R V + Q+ +F TV DNI +G ++ + +L DLD
Sbjct: 674 SVV-IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERY--ERAIDVTALQHDLDLLPGGD 730
Query: 186 -SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK--LKK 242
+ + + G IS GQ QRV++AR + + +V + D+P SALD + + D +K L+
Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRG 790
Query: 243 KHGMTIVMVS---HSIKQIQRIADVVCLLVNGEIVE 275
K T V+V+ H + Q+ RI L+ G I E
Sbjct: 791 K---TRVLVTNQLHFLSQVDRII----LVHEGMIKE 819
|
Length = 1622 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 8e-15
Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 18/206 (8%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL-NRLWEPP-SGTVFLDGRDITDLDVLSL 136
IL GV G I+ ++GPSGSGKSTLL AL R+ +GT+ + R T +
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QI 138
Query: 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLR-GKKLTENE-------VYKLLSLADLDSSF 187
++ G + Q L+ TV + + + LR K LT+ E V L L +++
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTI 198
Query: 188 L-NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
+ N IS G+ +RV++A + P +L+LDEPTS LD + + L L +K G
Sbjct: 199 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GK 257
Query: 247 TIVMVSHS-IKQIQRIADVVCLLVNG 271
TIV H ++ ++ D V +L G
Sbjct: 258 TIVTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 52/227 (22%)
Query: 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123
+ + + K ILK +++ G +G++G +G+GKSTLLR + + + +G
Sbjct: 5 YTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-- 62
Query: 124 DGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTE-NEVYKLLSLA 181
+ KVG L Q P L TV +N+ G L NE+ +
Sbjct: 63 ---------RPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEP 113
Query: 182 DLDSSFLNKTGGEI-----------------------------------SVGQAQRVALA 206
D D L E+ S G+ +RVAL
Sbjct: 114 DADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALC 173
Query: 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
R L ++P++LLLDEPT+ LD S +E L + T+V V+H
Sbjct: 174 RLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPG----TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-14
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 31/240 (12%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL-NRLWEPP-------SGTVFLDGR 126
IL+ +++ I G + ++G +G+GKSTLL+AL L +G V L+G
Sbjct: 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE 71
Query: 127 DITDLDVLSLRRKVGMLFQIPALFEGTVVDNI----RYGPQLRGKKLTENE---VYKLLS 179
+ +D L R +L Q I RY R LT + ++ L+
Sbjct: 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 180 LADLDSSFLNKTGGEISVGQAQRVALARTLAN---------EPEVLLLDEPTSALDPIST 230
LA + + + +S G+ RV AR LA P LLLDEPT+ALD
Sbjct: 132 LAGATA-LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 231 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSE 284
+ D + +L + + ++ + H R AD + +L +G IV +VL P ++
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIAR 250
|
Length = 272 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 54/208 (25%), Positives = 115/208 (55%), Gaps = 13/208 (6%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT-DLDVL 134
G L VN+++ I ++G +G+GKSTLL+ L +++ SG++ G++I
Sbjct: 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE 69
Query: 135 SLRRKVGMLFQ-IPALFEGTVVDNI---RYGPQLRGKKLTENEVYK----LLSLADLDSS 186
+L + M+ Q + + + +V+DN+ RY +G + ++++Y+ + D+D
Sbjct: 70 ALENGISMVHQELNLVLQRSVMDNMWLGRY--PTKGMFVDQDKMYRDTKAIFDELDIDID 127
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
K +SV Q Q + +A+ + +++++DEPTS+L ++ ++ KLK++ G
Sbjct: 128 PRAKV-ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GC 185
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIV 274
IV +SH +++I ++ D + +L +G+ +
Sbjct: 186 GIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 57/199 (28%), Positives = 103/199 (51%), Gaps = 24/199 (12%)
Query: 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130
K ++ G +L+ ++ + G +G++G +GSGKSTLL AL RL G + +DG
Sbjct: 1226 KYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST-EGEIQIDGVSWNS 1284
Query: 131 LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----- 185
+ + + R+ G++ Q +F GT N+ P ++ ++ E++K+ L S
Sbjct: 1285 VTLQTWRKAFGVIPQKVFIFSGTFRKNL--DPY---EQWSDEEIWKVAEEVGLKSVIEQF 1339
Query: 186 ----SFLNKTGGEI-SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
F+ GG + S G Q + LAR++ ++ ++LLLDEP++ LDP++ Q I L
Sbjct: 1340 PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL--- 1396
Query: 241 KKKHGM---TIVMVSHSIK 256
K T+++ H ++
Sbjct: 1397 --KQSFSNCTVILSEHRVE 1413
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 27/212 (12%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR-----DITDLDVL 134
L ++ + G + ++G +G+GKSTLL+ L+ ++P +G++ +DG+ T
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTA---- 75
Query: 135 SLRRKVGMLFQ----IPALFEGTVVDNIRYG--PQLRG----KKLTENEVYKLLSLA-DL 183
+L V +++Q +P + TV +N+ G P G + L +L L D+
Sbjct: 76 ALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI 132
Query: 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
D K +S+GQ Q V +A+ LA V+ DEPTS+L + + V+ +L+ +
Sbjct: 133 DPDTPLK---YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE 189
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
G I+ VSH +++I + D + + +G V
Sbjct: 190 -GRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
|
Length = 501 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 34/185 (18%)
Query: 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143
+ E+P G + I GP+G GKS+L R L LW G L+ K +
Sbjct: 472 SFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGR-------------LTKPAKGKLF 518
Query: 144 F--QIPALFEGTVVDNIRYGP----QLRGKKLTENEVYKLLSLADLDSSFLNKTGG---- 193
+ Q P + GT+ D I Y P ++ + L++ ++ ++L L L + GG
Sbjct: 519 YVPQRPYMTLGTLRDQIIY-PDSSEDMKRRGLSDKDLEQILDNVQLT-HILEREGGWSAV 576
Query: 194 -----EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
+S G+ QR+A+AR ++P+ +LDE TSA+ ++E + +L ++ G+T+
Sbjct: 577 QDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV----DVEGYMYRLCREFGITL 632
Query: 249 VMVSH 253
VSH
Sbjct: 633 FSVSH 637
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-14
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 24/221 (10%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG-------RDITD 130
++ ++ + +G + I+G SGSGKS AL RL E G V D R + +
Sbjct: 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89
Query: 131 LDVLS---LRRKVG----MLFQIPALFEGTV-------VDNIRYGPQLRGKKLTENEVYK 176
L S +R G M+FQ P V ++IR Q ++ E +
Sbjct: 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH-QGASREEAMVEAKR 148
Query: 177 LLSLADLDSS--FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234
+L + + L++ ++S G QRV +A L+ P VL+ DEPT+ALD I
Sbjct: 149 MLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL 208
Query: 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
++ L+K+ M ++ ++H + + IAD V ++ GE VE
Sbjct: 209 QLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249
|
Length = 623 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 3e-14
Identities = 63/223 (28%), Positives = 89/223 (39%), Gaps = 54/223 (24%)
Query: 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL-DGRD 127
+ K ILK +++ G +G++G +G+GKSTLLR + + + G G
Sbjct: 12 VSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI- 70
Query: 128 ITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTE-NEVYKLLSLADLDS 185
KVG L Q P L TV +N+ G L NE+Y + D D
Sbjct: 71 -----------KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADF 119
Query: 186 SFLNKTGGE-----------------------------------ISVGQAQRVALARTLA 210
L GE +S G+ +RVAL R L
Sbjct: 120 DALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLL 179
Query: 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+P++LLLDEPT+ LD S +E L G T+V V+H
Sbjct: 180 EKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---G-TVVAVTH 218
|
Length = 556 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 6e-14
Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 17/182 (9%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P+L+ ++ +P G ++ + G +G+GK+TLL+ + L P G + + + I D+ + +
Sbjct: 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI-KKDLCTYQ 73
Query: 138 RK---VGMLFQI-PALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGG 193
++ VG I P L T+ +N Y + E+ +L SL L ++ G
Sbjct: 74 KQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEHL----IDYPCG 126
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK--KKHGMTIVMV 251
+S GQ ++VAL R ++ ++ LLDEP ALD +S + ++ K++ + G +++
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS---LLTIITKIQEHRAKGGAVLLT 183
Query: 252 SH 253
SH
Sbjct: 184 SH 185
|
Length = 200 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 8e-14
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 36/179 (20%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP--SGTVFLDGRDITDLDVLS 135
+L ++ + G + ++G SG+GK+TLL L +G + ++GR + +
Sbjct: 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK----N 76
Query: 136 LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE 194
+R G + Q TV + +R+ LRG
Sbjct: 77 FQRSTGYVEQQDVHSPNLTVREALRFSALLRG---------------------------- 108
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+SV Q +R+ + LA +P +L LDEPTS LD + NI L KL G I+ H
Sbjct: 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL-ADSGQAILCTIH 166
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 9e-14
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 26/204 (12%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+L+ V++ +P+G + ++G +GSGKSTLL++L +E G V+ + R
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------R 721
Query: 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSL-ADLD--SSFLNKTGGE- 194
+ + Q + TV NI + + +L + ++ L ADL L GE
Sbjct: 722 SIAYVPQQAWIMNATVRGNILFFDEEDAARLA--DAVRVSQLEADLAQLGGGLETEIGEK 779
Query: 195 ---ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 250
+S GQ RV+LAR + +V LLD+P SALD + + E+ L G T V+
Sbjct: 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF--LGALAGKTRVL 837
Query: 251 VSHSIKQIQRIADVVCLLVNGEIV 274
+H + + R AD V L +G +
Sbjct: 838 ATHQVHVVPR-ADYVVALGDGRVE 860
|
Length = 1560 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-13
Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 37/256 (14%)
Query: 56 DNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE 115
N + F VR + D ++ ++ + +G I+G G GSG++ L+ L + +
Sbjct: 258 SNLAHETVFEVRNVTSR-DRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK 314
Query: 116 PPSGTVFLDGRDIT---DLDVLSLRRKVGMLFQIPALFEG------TVVDNIRYGPQLRG 166
G + L+G+DI+ LD + K GM + + + ++ N+ L+
Sbjct: 315 RAGGEIRLNGKDISPRSPLDAV----KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKD 370
Query: 167 ---------------KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211
++ EN+ +LL+L +N+ E+S G Q+V +++ L
Sbjct: 371 GGYKGAMGLFHEVDEQRTAENQ-RELLAL---KCHSVNQNITELSGGNQQKVLISKWLCC 426
Query: 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271
PEV++ DEPT +D + I V+ +L G I+MVS + +I + D + + G
Sbjct: 427 CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEG 485
Query: 272 EIVEVLK-PDLLSEAK 286
+ ++L D +SE +
Sbjct: 486 RLTQILTNRDDMSEEE 501
|
Length = 510 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145
EI G ++GI+GP+G GK+T ++ L + +P G DL KV Q
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG-------SEEDL-------KVSYKPQ 408
Query: 146 -IPALFEGTVVDNIRYGPQLR-GKKLTENEVYKLLSLADL-DSSFLNKTGGEISVGQAQR 202
I ++GTV D +R + G + E+ K L+L DL + +GGE+ QR
Sbjct: 409 YISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGEL-----QR 463
Query: 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262
VA+A L+ E ++ LLDEP++ LD + V+ + + + T ++V H I I ++
Sbjct: 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVS 523
Query: 263 DVVCLLVNGEIVEVLKPDLLSEAKHPMALR 292
D + ++ GE P A PM++R
Sbjct: 524 DRL-IVFEGE------PGKHGHASPPMSMR 546
|
Length = 591 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-13
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 26/194 (13%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD-GRDITDL----- 131
P+L+ V++ + G + + GPSGSGKSTLLR+L + P G + + + DL
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 132 -DVLSLRRK-VGMLFQ-------IPALFEGTVVDNIRYGPQL-RG--KKLTENEVYKLLS 179
+VL +RR +G + Q + AL ++ P L RG +++ + LL+
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSAL-------DVVAEPLLARGVPREVARAKAADLLT 137
Query: 180 LADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 239
+L + S G+ QRV +AR + +LLLDEPT++LD + + + L++
Sbjct: 138 RLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE-LIR 196
Query: 240 LKKKHGMTIVMVSH 253
K G +V + H
Sbjct: 197 EAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 2e-13
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 7/201 (3%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L +++ I +G I+ I+G +G GKSTL + L+ P G + LDG ++ R
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417
Query: 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISV 197
+F LF+ + + L + L E+ + + D S T +S
Sbjct: 418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFS----TTTALST 473
Query: 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257
GQ +R+AL + +LL DE + DP + + L+ K+ G TI+++SH +
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY 533
Query: 258 IQRIADVVCLLVNGEIVEVLK 278
+ +AD + L G IV+ +
Sbjct: 534 FE-LADQIIKLAAGCIVKDTE 553
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-13
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 44/228 (19%)
Query: 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR--------LWE 115
F VR+ E +L+ +N+EI G ++ ++G SG+GK+TLLR + +
Sbjct: 387 FGVRQRVIER----YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYR 442
Query: 116 PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVY 175
P SG V + ++ L P E T+++ LR K N
Sbjct: 443 PDSGKVEVPKNTVSALIPGEYE---------PEFGEVTILE------HLRSKTGDLNAAV 487
Query: 176 KLLSLADL-DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234
++L+ A L D+ + E+S GQ +R LA+ LA P VLL+DE + LD ++ +
Sbjct: 488 EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVA 547
Query: 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
+ +L ++ G+T+++V+H E+ L+PD L
Sbjct: 548 RKISELAREAGITLIVVTH----------------RPEVGNALRPDTL 579
|
Length = 593 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-13
Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 42/226 (18%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145
I + ++GI+GP+G GK+T ++ L + +P G + +LD +S + +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI------EIELDTVSYKPQ-----Y 69
Query: 146 IPALFEGTV-------VDNIRYGPQLRGKKLTENEVYKLLSLADL-DSSFLNKTGGEISV 197
I A +EGTV + P + E+ K L + + D +GGE+
Sbjct: 70 IKADYEGTVRDLLSSITKDFYTHPYFK------TEIAKPLQIEQILDREVPELSGGEL-- 121
Query: 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257
QRVA+A L+ + ++ LLDEP++ LD V+ + + + T +V H I
Sbjct: 122 ---QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178
Query: 258 IQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL-----RFLQLSG 298
I +AD + IV +P + A P +L RFL+
Sbjct: 179 IDYLADRL-------IVFEGEPSVNGVANPPQSLRSGMNRFLKNLD 217
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 25/227 (11%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT-DLDVL 134
G L G + + G +M ++G +G+GKST+++ L ++ +G++ G+++T +
Sbjct: 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKS 75
Query: 135 SLRRKVGMLFQ----IPALFEGTVVDNIRYGPQLRG-------KKLTENEVYKLLSLADL 183
S +G++ Q IP L T+ +NI G + KK+ E KLL A L
Sbjct: 76 SQEAGIGIIHQELNLIPQL---TIAENIFLGREFVNRFGRIDWKKMYA-EADKLL--ARL 129
Query: 184 DSSFLNKT-GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
+ F + GE+S+G+ Q V +A+ L+ E +V+++DEPT AL T+++ V+ +L K
Sbjct: 130 NLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL-K 188
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEI-----VEVLKPDLLSE 284
G IV +SH +K+I I D V + +G+ V L D L E
Sbjct: 189 SQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIE 235
|
Length = 501 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-12
Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 22/205 (10%)
Query: 61 KPKFRVRELRKESDDGA--PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS 118
KP ++++L S DG L ++ E+P+G I+GIIG +GSGKSTL + + P
Sbjct: 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK 78
Query: 119 GTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG--TVVDNIRYGPQLRG--KKLTENEV 174
GTV + G L I + G T ++NI + G K+ + +
Sbjct: 79 GTVDIKGS--------------AALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEII 124
Query: 175 YKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234
+++ AD+ F+ + S G R+ A ++ P++L++DE S D T+
Sbjct: 125 PEIIEFADI-GKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCL 183
Query: 235 DVLVKLKKKHGMTIVMVSHSIKQIQ 259
D + + K++ G TI +SHS+ Q++
Sbjct: 184 DKMNEFKEQ-GKTIFFISHSLSQVK 207
|
Length = 549 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-12
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
+G L+ + +P G I ++G +GSGKSTL +AL SG + + G+
Sbjct: 18 NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK 77
Query: 135 SLRRKVGMLFQI----PALFEGTVVDNIRYGPQ--LRGKKLTENEVYKLLSLADLD-SSF 187
+L V ++ P L E V+ RYG LR K + ++ +LA +D F
Sbjct: 78 NLVAYVPQSEEVDWSFPVLVEDVVMMG-RYGHMGWLRRAKKRDRQIVTA-ALARVDMVEF 135
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
++ GE+S GQ +RV LAR +A + +V+LLDEP + +D + I +L +L+ + G T
Sbjct: 136 RHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKT 194
Query: 248 IVMVSHSIKQIQRIAD 263
+++ +H++ + D
Sbjct: 195 MLVSTHNLGSVTEFCD 210
|
Length = 272 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 37/214 (17%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145
EI +G ++GI+GP+G GK+T + L + +P G V D ++ K+ Q
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--------DPEL-----KISYKPQ 407
Query: 146 -IPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204
I ++GTV D +R G ++E+ K L L L L+K ++S G+ QRVA
Sbjct: 408 YIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL----LDKNVKDLSGGELQRVA 463
Query: 205 LARTLANEPEVLLLDEPTSALDPISTQNIED------VLVKLKKKHGMTIVMVSHSIKQI 258
+A L+ + ++ LLDEP++ LD +E + ++ ++ T ++V H I I
Sbjct: 464 IAACLSRDADLYLLDEPSAHLD------VEQRLAVAKAIRRIAEEREATALVVDHDIYMI 517
Query: 259 QRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 292
I+D + ++ GE P A PM +R
Sbjct: 518 DYISDRL-MVFEGE------PGKHGHASGPMDMR 544
|
Length = 590 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-12
Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 25/252 (9%)
Query: 66 VRELR---KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SG 119
V++LR D + +N + G +GI+G SGSGKS AL L G
Sbjct: 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG 74
Query: 120 TVFLDGRDITDLDVLSLRR----KVGMLFQIPALFEGTVVDNIRYGPQLR---------G 166
+ +GR+I +L L + ++ M+FQ P ++ +R G QL
Sbjct: 75 SATFNGREILNLPEKELNKLRAEQISMIFQDPMT---SLNPYMRVGEQLMEVLMLHKGMS 131
Query: 167 KKLTENEVYKLLSLADLDSSF--LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224
K E ++L + + + E S G QRV +A L P++L+ DEPT+A
Sbjct: 132 KAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 191
Query: 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLS 283
LD I +L +LK++ I+M++H + + I D V ++ G +E D+
Sbjct: 192 LDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFY 251
Query: 284 EAKHPMALRFLQ 295
+ HP ++ L
Sbjct: 252 QPSHPYSIGLLN 263
|
Length = 330 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-12
Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 58 QIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP 117
+ KP + E+R + P ++ V+ ++ KG I+GI G G+ ++ ++ L + E
Sbjct: 242 KENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 301
Query: 118 SGTVFLDGRDITDLD-----------VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG 166
+GT+ L G+ I + + V RR G+ + F +++ NIR +
Sbjct: 302 AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFN-SLISNIR---NYKN 357
Query: 167 KKLTENEVYKLLSLADLDS-------SFLNKTG------GEISVGQAQRVALARTLANEP 213
K LL + + S S KT G +S G Q+V + R L +P
Sbjct: 358 K-------VGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQP 410
Query: 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
E+L+LDEPT +D + I ++ +L KK I+++S + ++ I D + ++ NG +
Sbjct: 411 EILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLV 469
Query: 274 VEVLK 278
++
Sbjct: 470 AGIVD 474
|
Length = 491 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 5e-12
Identities = 59/269 (21%), Positives = 124/269 (46%), Gaps = 27/269 (10%)
Query: 24 EVIQKM-PSTCSLFRDEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKG 82
++IQ + P+ ++ L +PG + P V +L E +
Sbjct: 231 DIIQAITPAAREKSLSASQKLWLELPGNRRQQ---AAGAPVLTVEDLTGEG------FRN 281
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142
+++E+ G I+G+ G G+G++ L L L G + L+G++I L R G+
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ-RLARGL 340
Query: 143 LF-----QIPALF-EGTVVDNI------RYGPQLRGKKLTENEVYKLLSLA-DLDSSFLN 189
++ Q L+ + + N+ R G ++ + EN V + A ++ +
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR--ENAVLERYRRALNIKFNHAE 398
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+ +S G Q+V +A+ L P++L++DEPT +D + +I ++ + + + ++
Sbjct: 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVL 457
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIVEVLK 278
+S +++I+++AD V ++ GEI L
Sbjct: 458 FISSDLEEIEQMADRVLVMHQGEISGALT 486
|
Length = 510 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-12
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 27/200 (13%)
Query: 87 IPK-GVIMGIIGPSGSGKSTLLRAL--------NRLWEPPSGTVFLDGRDITDL------ 131
+P+ G ++G++GP+G GKST L+ L + +PP LD ++L
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81
Query: 132 ---DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL 188
+ + K + IP +G V + ++ + RGK +E+ L L + L
Sbjct: 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDE-RGKL---DELVDQLELRHV----L 133
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ ++S G+ QRVA+A LA + + DEP+S LD N ++ +L + +
Sbjct: 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL-AEDDNYV 192
Query: 249 VMVSHSIKQIQRIADVVCLL 268
++V H + + ++D + L
Sbjct: 193 LVVEHDLAVLDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 1e-11
Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 20/182 (10%)
Query: 24 EVIQKMPSTCSLFRDEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGV 83
E ++ + +T SL+ R+ L V + + I+K +F+ ++ I K +
Sbjct: 347 EYMKSLEATNSLYEIINRKPL--VENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDL 404
Query: 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL-DGRDITDLDVLSLRRKVGM 142
N + +G +G SG GKST+L+ + RL++P G + + D ++ D+++ R K+G+
Sbjct: 405 NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGV 464
Query: 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD--SSFLNKTGGEISVGQA 200
+ Q P LF ++ +NI+ Y L SL DL+ S++ N+ G + +
Sbjct: 465 VSQDPLLFSNSIKNNIK---------------YSLYSLKDLEALSNYYNEDGNDSQENKN 509
Query: 201 QR 202
+R
Sbjct: 510 KR 511
|
Length = 1466 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 52/213 (24%)
Query: 50 EAEAEDDNQIQKPK--------FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGS 101
+ + +I P L K D ++ ++ ++P G I+G+IGP+G+
Sbjct: 301 FQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGA 359
Query: 102 GKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYG 161
GKSTL R + +P SGT+ K+G ++ VD R
Sbjct: 360 GKSTLFRMITGQEQPDSGTI-----------------KIGETVKL------AYVDQSRDA 396
Query: 162 PQLRGKKLTENEV---YKLLSLADLD-------SSFLNKTG-------GEISVGQAQRVA 204
L K E+ ++ L + F N G G++S G+ RV
Sbjct: 397 --LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRF-NFKGSDQQKKVGQLSGGERNRVH 453
Query: 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237
LA+TL + VLLLDEPT+ LD + + +E+ L
Sbjct: 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL 486
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 38/209 (18%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--------NRLWEPPS--------- 118
G PI K +G + GI+GP+G GK+T ++ L E PS
Sbjct: 92 GLPIPK-------EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFR 144
Query: 119 GTVFLDGRDITDLDVLSLR--RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYK 176
GT + L ++ K + IP +F+G V + ++ + RGK +EV +
Sbjct: 145 GTELQN--YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDE-RGKL---DEVVE 198
Query: 177 LLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236
L L + L++ E+S G+ QRVA+A L + + DEPTS LD N+ +
Sbjct: 199 RLGL----ENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARL 254
Query: 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
+ +L + +++V H + + +AD V
Sbjct: 255 IRELAEGK--YVLVVEHDLAVLDYLADNV 281
|
Length = 590 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-11
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
S + P+ ++ + G + + G +G+GK+TLLR L L SG + +DG+ T D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 133 VLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLN 189
R + L +P L + ++N+ + L G+ K ++ LA + + +
Sbjct: 80 ---RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVR 136
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227
++S GQ +R+ALAR + + LLDEP + LD
Sbjct: 137 ----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
|
Length = 214 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 9e-11
Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 63/227 (27%)
Query: 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD-GRDITDLDVLS 135
AP+L + I + ++G +G+GKSTL++ L +G V LD GR I + D+
Sbjct: 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDDGRIIYEQDL-- 66
Query: 136 LRRKVGMLFQIPAL-FEGTVVDNIRYGPQLRGKKLTE----------------------- 171
V L Q P EGTV D + G + + + L
Sbjct: 67 ---IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKL 123
Query: 172 ----------------NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215
NEV L L D D++ +S G ++ AL R L + P+V
Sbjct: 124 QEQLDHHNLWQLENRINEVLAQLGL-DPDAAL-----SSLSGGWLRKAALGRALVSNPDV 177
Query: 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262
LLLDEPT+ LD + + +E L K +I+ +SH I+ +A
Sbjct: 178 LLLDEPTNHLDIETIEWLEGFL----KTFQGSIIFISHDRSFIRNMA 220
|
Length = 635 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 45/214 (21%), Positives = 80/214 (37%), Gaps = 34/214 (15%)
Query: 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP---PSGTVFLDG 125
+ PILK + + G ++ ++G GSG STLL+AL E G + +G
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71
Query: 126 RDITDLDVLSLRRKVGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLA 181
++ + + P L TV + + + + +G NE +
Sbjct: 72 IPY-KEFAEKYPGEIIYVSEEDVHFPTL---TVRETLDFALRCKG-----NEFVR----- 117
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
IS G+ +RV++A L + VL D T LD + I + +
Sbjct: 118 ------------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA 165
Query: 242 KKHGMTIVM-VSHSIKQIQRIADVVCLLVNGEIV 274
T + + + +I + D V +L G +
Sbjct: 166 DVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 34/196 (17%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---- 134
IL V+ + G + ++G SG+GK+TLL L + V IT D L
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVL-------AERV--TTGVITGGDRLVNGR 828
Query: 135 ----SLRRKVGMLFQ----IPALFEGTVVDNIRYGPQLR-GKKLTENE-------VYKLL 178
S +R +G + Q +P TV +++R+ LR K ++++E V KLL
Sbjct: 829 PLDSSFQRSIGYVQQQDLHLP---TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLL 885
Query: 179 SLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL-LDEPTSALDPISTQNIEDVL 237
+ + + G ++V Q +R+ + L +P++LL LDEPTS LD + +I ++
Sbjct: 886 EMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLM 945
Query: 238 VKLKKKHGMTIVMVSH 253
KL HG I+ H
Sbjct: 946 RKL-ADHGQAILCTIH 960
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 44/214 (20%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTL----------LRALNRLWEPPSGTVFLDGRDIT 129
LK V+++IP+ ++ I G SGSGKS+L R + L FL D
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESL--SAYARQFLGQMDKP 68
Query: 130 DLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSL--------- 180
D+D I L +D R T E+Y L L
Sbjct: 69 DVD------------SIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE 116
Query: 181 -------ADLDSSFLNKTGGEISVGQAQRVALARTL-ANEPEVL-LLDEPTSALDPISTQ 231
L L+++ +S G+AQR+ LA + + VL +LDEP+ L P
Sbjct: 117 RLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDND 176
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
+ + L +L + G T+++V H + R AD V
Sbjct: 177 RLIETLKRL-RDLGNTVLVVEHD-EDTIRAADHV 208
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 45/227 (19%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR---- 138
++ + G I+G+ G G+G+S L++ L +G V+LDG+ + +R
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK------PIDIRSPRDA 325
Query: 139 -KVGMLFQIPA--LFEG-----TVVDNI---------RYGPQLRGKKLTENEVYKLLSLA 181
+ G++ P EG +V DNI R G + + EN A
Sbjct: 326 IRAGIML-CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAEN--------A 376
Query: 182 DLDSSFLN-KTG------GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234
D LN KT +S G Q+ L R L+ + +V+LLDEPT +D + I
Sbjct: 377 DRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIY 436
Query: 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPD 280
+V+ +L + G+ ++ VS + ++ +AD + ++ G I E+ +
Sbjct: 437 NVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482
|
Length = 501 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 36/228 (15%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVFLDGRDITD 130
S + IL+G+N+E+ G + I+GP+GSGKSTL L +E GTV G+D+ +
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 131 LDVLSLRRK-VGMLFQIPA--------LFEGTVVDNIRYGPQLRGKK---------LTEN 172
L + + M FQ P F T ++ +R RG++ L E
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR---SYRGQEPLDRFDFQDLMEE 126
Query: 173 EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 232
++ L DL + +N S G+ +R + + EPE+ +LDE S LD I
Sbjct: 127 KIALLKMPEDLLTRSVNVG---FSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALK 182
Query: 233 IEDVLVKLKKKHGMTIVMVSHSIKQIQRI-----ADVVCLLVNGEIVE 275
I V + + ++V+H QRI D V +L G IV+
Sbjct: 183 IVADGVNSLRDGKRSFIIVTH----YQRILDYIKPDYVHVLYQGRIVK 226
|
Length = 248 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-10
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK-- 139
G++ + G ++ I GP+G+GK++LLR L L P +G V G I +
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRD-EYHQDLL 77
Query: 140 -VGMLFQI-PALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197
+G I L T ++N+R+ +L G + +++ L+ L + F + ++S
Sbjct: 78 YLGHQPGIKTEL---TALENLRFYQRLHG-PGDDEALWEALAQVGL-AGFEDVPVRQLSA 132
Query: 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
GQ +RVALAR + +LDEP +A+D +E +L + ++ GM +++ +H
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGM-VILTTH 187
|
Length = 204 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 27/200 (13%)
Query: 87 IPK-GVIMGIIGPSGSGKSTLLRALN--------RLWEPPSGTVFLDGRDITDL-----D 132
P+ G ++GI+GP+G GKST L+ L R +PPS + T+L
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155
Query: 133 VLSLRRKVGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL 188
+ + Q IP + +G V + ++ RGK +EV + L L ++ L
Sbjct: 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLK-KVDERGKF---DEVVERLGLENV----L 207
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ E+S G+ QRVA+A L + +V DEP+S LD N V+ +L + G +
Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYV 266
Query: 249 VMVSHSIKQIQRIADVVCLL 268
++V H + + ++D V +L
Sbjct: 267 IVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 4e-10
Identities = 43/180 (23%), Positives = 66/180 (36%), Gaps = 53/180 (29%)
Query: 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-LDGRDITDLDVLSLRRKVGMLFQIP 147
G ++ I+GP GSGK+TL RAL R PP G V +DG DI + + L +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIV------ 54
Query: 148 ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207
S R+ALA
Sbjct: 55 -----------------------------------------GGKKASGSGELRLRLALAL 73
Query: 208 TLANEPEVLLLDEPTSALDPISTQNIED-----VLVKLKKKHGMTIVMVSHSIKQIQRIA 262
+P+VL+LDE TS LD + +L+ LK + +T+++ ++ K +
Sbjct: 74 ARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPAL 133
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 5e-10
Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 52/196 (26%)
Query: 94 GIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG- 152
G+IG +G GKST ++ L EP +G V LD + ++G L Q FE
Sbjct: 31 GLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE-----------RLGKLRQDQFAFEEF 79
Query: 153 TVVDNIRYG-PQLRGKKLTENEVYKL--------LSLADLDSSFLNKTG-------GE-- 194
TV+D + G +L K + +Y L + +ADL+ F G GE
Sbjct: 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELL 139
Query: 195 ----ISVGQAQ------------RVALARTLANEPEVLLLDEPTSALDPISTQN-IEDVL 237
I Q RV LA+ L + P++LLLDEPT+ LD I+T +EDVL
Sbjct: 140 LGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD-INTIRWLEDVL 198
Query: 238 VKLKKKHGMTIVMVSH 253
+ T++++SH
Sbjct: 199 NERNS----TMIIISH 210
|
Length = 530 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-10
Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 67/240 (27%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL---------RALNRLWEPPSGTVFLDGRDITD 130
LK ++++IP GV+ + G SGSGKS+L+ R L+ E P ++G + D
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 131 LDVLSLRRKVGMLFQ---------IPALFEGTVVDNIR--YGPQLRGKKLTEN--EV-YK 176
KV ++ Q PA + G V D IR + +GK+ EV YK
Sbjct: 71 --------KVIVIDQSPIGRTPRSNPATYTG-VFDEIRELFCEVCKGKRYNRETLEVRYK 121
Query: 177 LLSLAD-LDSS-------FLN----------------------KTGGEISVGQAQRVALA 206
S+AD LD + F N + +S G+AQR+ LA
Sbjct: 122 GKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLA 181
Query: 207 RTLANE---PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263
+ L+ + +LDEPT+ L + + +VL +L K G T+V++ H++ I + AD
Sbjct: 182 KELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVI-KCAD 239
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 8e-10
Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 63/194 (32%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL------RALNRLWE-----PPSGTVFLDGRDI 128
L+ +++ IP V++ + G SGSGKSTL+ RL + +F+D
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID---- 66
Query: 129 TDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL 188
L+ + + + Y L
Sbjct: 67 ------QLQFLIDV--------------GLGYLT-------------------------L 81
Query: 189 NKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
+ +S G+ QRV LA L +EP + +LDEP++ L + +V+ L G
Sbjct: 82 GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL-GN 140
Query: 247 TIVMVSHSIKQIQR 260
T++++ H++ +
Sbjct: 141 TVILIEHNLDVLSS 154
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 1e-09
Identities = 52/211 (24%), Positives = 107/211 (50%), Gaps = 5/211 (2%)
Query: 64 FRVRELRK-ESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF 122
R+ EL K S +P + + + + G G++G +G+GK+T + L SG
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 123 LDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLA 181
+ G+ I ++ + + +G Q A+ + T +++ +LRG E E S+
Sbjct: 1998 VAGKSILT-NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQ 2056
Query: 182 DLD-SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
L S + ++ G S G ++++ A L P ++LLDEPT+ +DP + + + + +V +
Sbjct: 2057 SLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271
++ G +V+ SHS+++ + + + ++V G
Sbjct: 2117 IRE-GRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 1e-09
Identities = 62/212 (29%), Positives = 87/212 (41%), Gaps = 72/212 (33%)
Query: 50 EAEAEDDNQIQKPK--------FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGS 101
+ + N+I P L K D I ++ +P G I+GIIGP+G+
Sbjct: 303 YQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDRLLI-DDLSFSLPPGGIVGIIGPNGA 361
Query: 102 GKSTLLRALNRLWEPPSGTV---------FLD-GRD-----------ITD-LDVLSLRRK 139
GKSTL + + +P SGT+ ++D RD I+ LD++ K
Sbjct: 362 GKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDII----K 417
Query: 140 VGMLFQIP-----ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE 194
VG +IP F N + G Q KK+ +LS GGE
Sbjct: 418 VGN-REIPSRAYVGRF------NFKGGDQ--QKKV------GVLS------------GGE 450
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALD 226
R+ LA+TL VLLLDEPT+ LD
Sbjct: 451 -----RNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 30/196 (15%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT-------- 129
P + V+ + KG I+G+ G G+G++ L++ L SG V LDG ++
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325
Query: 130 -------------DLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYK 176
D VL + K M + AL + R G L+ + V
Sbjct: 326 ANGIVYISEDRKRDGLVLGMSVKENM--SLTALRYFS-----RAGGSLKHADEQQ-AVSD 377
Query: 177 LLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236
+ L ++ + + + G +S G Q+VA+AR L P+VL+LDEPT +D + + I +
Sbjct: 378 FIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQL 437
Query: 237 LVKLKKKHGMTIVMVS 252
+ + K + G++I++VS
Sbjct: 438 INQFKAE-GLSIILVS 452
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-09
Identities = 72/316 (22%), Positives = 132/316 (41%), Gaps = 78/316 (24%)
Query: 22 QIEVIQKMPSTCSLFRDEVREHLLTVPGEAEAEDD------------------NQIQKPK 63
++ ++ + T + RD +H+ T +EDD ++I
Sbjct: 200 KLNEVKAVCDTICVIRDG--QHVATKDMSTMSEDDIITMMVGREITSLYPHEPHEIGDVI 257
Query: 64 FRVREL---------RKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114
R L RK DD V+ + +G I+G+ G G+G++ L++AL +
Sbjct: 258 LEARNLTCWDVINPHRKRVDD-------VSFSLRRGEILGVAGLVGAGRTELVQALFGAY 310
Query: 115 EPP-SGTVFLDGRDITDLDVL-SLRRKVGMLFQIPALFEGTVVDNIRYG--PQLR-GKKL 169
G VF++G+ + + ++R + M +P D R+G P L GK +
Sbjct: 311 PGKFEGNVFINGKPVDIRNPAQAIRAGIAM---VPE-------DRKRHGIVPILGVGKNI 360
Query: 170 TENEVYKLLSLADLD--------------------SSFLNKTGGEISVGQAQRVALARTL 209
T + + +D S FL +S G Q+ LA+ L
Sbjct: 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR--LSGGNQQKAVLAKML 418
Query: 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269
P VL+LDEPT +D + I ++ +L ++ G+ I++VS + ++ ++D V ++
Sbjct: 419 LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIG 477
Query: 270 NGEIVEVLKPDLLSEA 285
G+ LK D ++ A
Sbjct: 478 EGK----LKGDFVNHA 489
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 45/193 (23%)
Query: 76 GAPIL-KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF------------ 122
G P+L K +N I + ++GP+G GKST+L+ ++ +P SGTVF
Sbjct: 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQ 579
Query: 123 --LDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSL 180
+DG D++ +L + R F G +R L +T N L+L
Sbjct: 580 HHVDGLDLSSNPLLYMMR----------CFPGVPEQKLR--AHLGSFGVTGN-----LAL 622
Query: 181 ADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
+ + +S GQ RVA A+ +P +LLLDEP++ LD +E ++ L
Sbjct: 623 QPMYT---------LSGGQKSRVAFAKITFKKPHILLLDEPSNHLD---LDAVEALIQGL 670
Query: 241 KKKHGMTIVMVSH 253
G ++MVSH
Sbjct: 671 VLFQG-GVLMVSH 682
|
Length = 718 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 179 SLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238
+L D + + ++S GQ QR+++AR + P++L+LDE TS+LD S ++ +
Sbjct: 564 ALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623
Query: 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284
LK ++++H + I R A+ + +L N E + D++ E
Sbjct: 624 NLKGNENRITIIIAHRLSTI-RYANTIFVLSNRERGSTVDVDIIGE 668
|
Length = 1466 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 65/207 (31%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145
+ +G ++GI+GP+G+GK+T ++ L P DG
Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV---------------- 64
Query: 146 IPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205
Y PQ +++ +GGE+ QRVA+
Sbjct: 65 --------------YKPQ-----------------------YIDLSGGEL-----QRVAI 82
Query: 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
A L L DEP++ LD N + +L ++ T ++V H + + ++D +
Sbjct: 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRI 142
Query: 266 CLLVNGEIVEVLKPDLLSEAKHPMALR 292
+ GE P + A P R
Sbjct: 143 -HVFEGE------PGVYGIASQPKGTR 162
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 57/239 (23%), Positives = 96/239 (40%), Gaps = 28/239 (11%)
Query: 58 QIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP 117
QI + FR+ + + ++ + G +G +GSGKS L RAL
Sbjct: 5 QISQGTFRLSDTKTLQLP--------SLTLNAGDSWAFVGANGSGKSALARALAGELPLL 56
Query: 118 SGTVFLDGRDITDLDVLSL---------RRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK 168
SG IT L L R ML T + I Q K
Sbjct: 57 SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEII----QDEVKD 112
Query: 169 LTENEVY-KLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227
E + + L L++ +S G+ ++ L + L +EP++L+LDEP LD
Sbjct: 113 PARCEQLAQQFGITAL----LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDV 168
Query: 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEA 285
S Q + ++L L + G+T+V+V + +I +L + + E + ++L +A
Sbjct: 169 ASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226
|
Length = 490 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 65/241 (26%), Positives = 98/241 (40%), Gaps = 65/241 (26%)
Query: 72 ESDDGAPILKGVNME-----------IPKGVIM-------GIIGPSGSGKSTLLR--ALN 111
+ + G P +K ++ME I + G++G +G+GK+T LR A++
Sbjct: 167 DGNGGGPAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226
Query: 112 RLWEPPSGTVFLD------GRDITDLD-VLS--------LRRKVGMLFQIPALFEGTVVD 156
+ P L G D T L VL+ L + ++ Q L T
Sbjct: 227 AIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETG 286
Query: 157 NIRYGPQ-------LRGKKLTENEVYKLLSLADLDS------------SFL----NKTGG 193
+ G ++L E +YK L L D + SF K
Sbjct: 287 KGK-GANKDGVDKDAVSQRLEE--IYKRLELIDAYTAEARAASILAGLSFTPEMQVKATK 343
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
S G R+ALAR L EP++LLLDEPT+ LD + +E L+K K T ++VSH
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPK----TFIVVSH 399
Query: 254 S 254
+
Sbjct: 400 A 400
|
Length = 718 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 43/187 (22%), Positives = 90/187 (48%), Gaps = 24/187 (12%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L ++++ +G ++G++G +GSGKSTL + P G V +G ++ V+++
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG----EVSVIAI--S 93
Query: 140 VGMLFQIPALFEGTVVDNIRYGPQLRG------KKLTENEVYKLLSLADLDSSFLNKTGG 193
G+ Q+ T ++NI + G K +T ++ + L + F+ +
Sbjct: 94 AGLSGQL------TGIENIEFKMLCMGFKRKEIKAMTP-KIIEFSELGE----FIYQPVK 142
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+ S G ++ + + P++L++DE S D Q D + + K++ TI VSH
Sbjct: 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ-NKTIFFVSH 201
Query: 254 SIKQIQR 260
++ Q+++
Sbjct: 202 NLGQVRQ 208
|
Length = 264 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 69/206 (33%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV------------- 121
D P+ K +N+ + G + IIG +G GK+TLLR L EP SGTV
Sbjct: 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQ 389
Query: 122 -----FLDGRDITDL---------DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK 167
F + + D D ++R +G L LF D+I+ K
Sbjct: 390 DHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL-----LFSQ---DDIK-------K 434
Query: 168 KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227
+ K+LS GGE R+ + + +P VL++DEPT+ +D
Sbjct: 435 SV------KVLS------------GGE-----KGRMLFGKLMMQKPNVLVMDEPTNHMD- 470
Query: 228 ISTQNIEDVLVKLKKKHGMTIVMVSH 253
++IE + + L+K G T++ VSH
Sbjct: 471 --MESIESLNMALEKYEG-TLIFVSH 493
|
Length = 530 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE 151
I I G +G GKS+LLR + + +P SG ++ +I ++ +G + E
Sbjct: 28 ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY-IG--HNLGLKLE 84
Query: 152 GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211
TV +N+++ ++ T L DL L++ +S G + VA+AR +A
Sbjct: 85 MTVFENLKFWSEIYNSAETLYAAIHYFKLHDL----LDEKCYSLSSGMQKIVAIARLIAC 140
Query: 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH---SIKQIQ 259
+ ++ LLDE + L +++ + L+ +K G +++ SH SIK Q
Sbjct: 141 QSDLWLLDEVETNLSK-ENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQ 190
|
Length = 195 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 66/250 (26%)
Query: 64 FRVREL---------RKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114
VR L K DD V+ + +G I+GI G G+G++ L++ L +
Sbjct: 260 LEVRNLTAWDPVNPHIKRVDD-------VSFSLRRGEILGIAGLVGAGRTELVQCLFGAY 312
Query: 115 EPPS-GTVFLDGRDITDLDVL-SLRRKVGMLFQIPALFEGTVVDNIRYG--PQLRGKKLT 170
G +F+DG+ + + ++ + + M+ + D R G P +
Sbjct: 313 PGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPE----------DRKRDGIVPVM------ 356
Query: 171 ENEVYKLLSLADLDS----SFLN-----------------KTG------GEISVGQAQRV 203
V K ++LA LD S ++ KT +S G Q+
Sbjct: 357 --GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414
Query: 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263
LA+ L P++L+LDEPT +D + I ++ +L ++ G+ I+++S + ++ ++D
Sbjct: 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSD 473
Query: 264 VVCLLVNGEI 273
V ++ G++
Sbjct: 474 RVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 38/189 (20%)
Query: 95 IIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGT- 153
I+G +G+GK+T++ AL +G + + + L R+ + Q+ FE
Sbjct: 27 IVGQNGAGKTTIIEALKYAL---TGELPPNSKGGAHDP--KLIREGEVRAQVKLAFENAN 81
Query: 154 -----------VVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE-ISVGQAQ 201
+++N+ + Q + S GGE +
Sbjct: 82 GKKYTITRSLAILENVIFCHQGESNWPLLDMR-GRCS------------GGEKVLASLII 128
Query: 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL----KKKHGMTIVMVSHSIKQ 257
R+ALA T + +L LDEPT+ LD +NIE+ L ++ K + +++++H +
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLDE---ENIEESLAEIIEERKSQKNFQLIVITHDEEL 185
Query: 258 IQRIADVVC 266
+ +
Sbjct: 186 VDAADHIYR 194
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL---------RALNRLWEPPSGTVFLDG 125
LK +++EIP GV + G SGSGKSTL+ R LN E P ++G
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEG 671
|
Length = 935 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-05
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 25/207 (12%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
IL + + + G +G++G +G+GKSTL++ L P SG + L + I
Sbjct: 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGI---------- 375
Query: 139 KVGMLFQIPALF----EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE 194
K+G Q F E + R PQ E ++ L + +
Sbjct: 376 KLGYFAQHQLEFLRADESPLQHLARLAPQE-----LEQKLRDYLGGFGFQGDKVTEETRR 430
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
S G+ R+ LA + P +LLLDEPT+ LD Q + + L+ + +V+VSH
Sbjct: 431 FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG----ALVVVSHD 486
Query: 255 IKQIQRIADVVCLLVNGEIVEVLKPDL 281
++ D + L+ +G+ VE DL
Sbjct: 487 RHLLRSTTDDLYLVHDGK-VEPFDGDL 512
|
Length = 638 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 27/98 (27%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL---------RALNRLWEPPSGTVFLDGRDITD 130
LK + + IP G+ I G SGSGKSTL+ LN + TV I
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALANRLNG-----AKTVPGRYTSIEG 678
Query: 131 LDVLSLRRKVGMLFQ---------IPALFEGTVVDNIR 159
L+ L KV + Q PA + G V D IR
Sbjct: 679 LEHLD---KVIHIDQSPIGRTPRSNPATYTG-VFDEIR 712
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 178 LSLADLDSSFLNKTGGEISVGQAQRVAL-ARTLANEPEVLLLDEPTSALDPISTQNIE-- 234
L + +D + +S GQ QR+AL R L P +L+LDEP LDP++ Q +
Sbjct: 385 LDILGIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRF 443
Query: 235 -DVLVKLKKKHGMT-IVMVSH 253
DVL+ G T ++ VSH
Sbjct: 444 VDVLI----SEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 1e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL 107
LK V++EIP G + G SGSGKSTL+
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLI 652
|
Length = 943 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 176 KLLSLADLDSSFL--NKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQ 231
+L L DL +L + +S G+ +R ALA+ L E +LDEP+ L P T
Sbjct: 456 RLSILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTH 515
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQ---RIADV 264
+ +V+ KL+ + G T+++V H + I RI D+
Sbjct: 516 KLINVIKKLRDQ-GNTVLLVEHDEQMISLADRIIDI 550
|
Length = 1809 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 37/188 (19%)
Query: 67 RELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL----NRLWEPPSGTV 121
R+L+K D ILK ++ I G + ++G GSG STLL+ + + G +
Sbjct: 63 RKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI 122
Query: 122 FLDGRDITDLDVLSLRRKVGMLFQI-------PALFEGTVVDNIRY-----GPQLRGKKL 169
DG ++ + G + P L TV + + + PQ R +
Sbjct: 123 TYDGITPEEI----KKHYRGDVVYNAETDVHFPHL---TVGETLDFAARCKTPQNRPDGV 175
Query: 170 TENEVYKLLSLAD-------LDSSFLNKTGGE----ISVGQAQRVALARTLANEPEVLLL 218
+ E K +AD L + K G + +S G+ +RV++A ++
Sbjct: 176 SREEYAK--HIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233
Query: 219 DEPTSALD 226
D T LD
Sbjct: 234 DNATRGLD 241
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 91 VIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVF 122
VI + GP+G GKS LLR L +L +P TVF
Sbjct: 88 VIGVVYGPTGCGKSQLLRNLLSCQLIQPIPETVF 121
|
IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter. Length = 370 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 3e-04
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA---NEPEVLLLDE 220
LR +L ++ K L L L IS G + +AL L + +LL+DE
Sbjct: 159 LRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDE 218
Query: 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
P + L P + + + L+K + G ++ +HS
Sbjct: 219 PENGLHPKLLRKLVE-LLKELSEKGAQLIFTTHS 251
|
Length = 256 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTL 106
LK +++EIP+ ++ I G SGSGKS+L
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
|
Length = 935 |
| >gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 7e-04
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 95 IIGPSGSGKSTLLRALNRLWEPPSGTVF 122
+ GPSGSGKSTL+ A+ L P F
Sbjct: 26 LTGPSGSGKSTLIDAIQTLLVPAKRVAF 53
|
Length = 60 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 196 SVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
S G+AQRV LA+ L + + +LDEPT+ L + + +VL +L K G T++++
Sbjct: 824 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVIE 882
Query: 253 H 253
H
Sbjct: 883 H 883
|
Length = 935 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 195 ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
+S G+AQR+ LA+ L + + +LDEPT+ L + + +VL +L K G T+V++
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK-GNTVVVI 888
Query: 252 SHS---IKQIQRIAD 263
H+ IK I D
Sbjct: 889 EHNLDVIKTADYIID 903
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRAL-NRLWEPPSGTVFLDG 125
P G ++ I G +GSGK+T+ +AL RL S ++LDG
Sbjct: 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43
|
Length = 176 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 33/181 (18%)
Query: 68 ELRKE--SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV---F 122
E++++ ++D +L+ V GV+ ++G SG+GK+TL+ L +G +
Sbjct: 882 EMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGY 934
Query: 123 LDGRDITDLDVLSLRRKVGMLFQIPALFEG--------TVVDNIRYGPQLR--------G 166
++G D+ + +K +I E TV +++ Y LR
Sbjct: 935 IEG----DIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEE 990
Query: 167 KKLTENEVYKLLSLADLDSSFLNKTG-GEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225
K + +EV +L+ L +L + + G +S Q +R+ +A L P ++ +DEPTS L
Sbjct: 991 KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050
Query: 226 D 226
D
Sbjct: 1051 D 1051
|
Length = 1470 |
| >gnl|CDD|222258 pfam13604, AAA_30, AAA domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVF 122
+ + GP+G+GK+T L+A WE V
Sbjct: 20 VAVVQGPAGTGKTTSLKAAREAWEAAGYRVI 50
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B. Length = 195 |
| >gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.001
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 95 IIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
+ GPSG+GK++LLR L +G R+ +LR
Sbjct: 29 LTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALR 71
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 188 LNKTGGEISVGQAQRVALARTL-ANEPEVL-LLDEPTSALDPISTQNIEDVLVKLKKKHG 245
L+++ G +S G+AQR+ LA + + VL +LDEP+ L + + + L +L+ G
Sbjct: 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDL-G 533
Query: 246 MTIVMVSHSIKQIQRIAD 263
T+++V H + R AD
Sbjct: 534 NTVIVVEHD-EDTIRAAD 550
|
Length = 935 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 39.0 bits (90), Expect = 0.002
Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 4/147 (2%)
Query: 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR-RKVGMLFQIPALF 150
+ IIGP+GSGKS LL+AL L S + LD + +L + + +
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEI 60
Query: 151 EGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207
E ++D IRY K L E L +K E S + + + R
Sbjct: 61 EEFLIDGIRYRYGFELDKEDILEELLYEYRKGEELLFERERSKESFEKSPEKKRELRGLR 120
Query: 208 TLANEPEVLLLDEPTSALDPISTQNIE 234
+ + L A I +
Sbjct: 121 EVLLLLNLSLSSFLLLASLEILLSILL 147
|
Length = 256 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 59/202 (29%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
DG ++K + ++ +G + +IGP+G GK+TLL+ + + SG + T L+V
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI----HCGTKLEV- 384
Query: 135 SLRRKVGMLFQIPALF---------EGTVVDNIRYGPQ---LRGKKLTENEVYKLLSLAD 182
A F E TV+DN+ G Q + G+ + L L D
Sbjct: 385 -------------AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPR-----HVLGYLQD 426
Query: 183 LDSSFLNK-----------TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
FL +GGE R+ LAR +L+LDEPT+ LD + +
Sbjct: 427 ----FLFHPKRAMTPVKALSGGE-----RNRLLLARLFLKPSNLLILDEPTNDLDVETLE 477
Query: 232 NIEDVLVKLKKKHGMTIVMVSH 253
+E++L + T+++VSH
Sbjct: 478 LLEELLDSYQG----TVLLVSH 495
|
Length = 635 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTL 106
LK +++EIP+ ++ I G SGSGKS+L
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 26/159 (16%)
Query: 116 PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVY 175
P + V + G+ I D+ LS+R Q+ P+ +K EV
Sbjct: 418 PEALAVTVGGKSIADVSELSIREAHEFFNQL------------TLTPE---EKKIAEEVL 462
Query: 176 K-----LLSLAD--LDSSFLNKTGGEISVGQAQRVALARTLANE-PEVL-LLDEPTSALD 226
K L L D LD L++ G +S G+AQR+ LA + + VL +LDEP+ L
Sbjct: 463 KEIRERLGFLIDVGLDYLSLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 522
Query: 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
+ + + L +L+ G T+++V H + R AD V
Sbjct: 523 QRDNRRLINTLKRLRDL-GNTLIVVEHD-EDTIRAADYV 559
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 0.004
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTL 106
LK ++++IP+ ++ G SGSGKS+L
Sbjct: 16 LKNIDLDIPRDKLVVFTGLSGSGKSSL 42
|
Length = 943 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 37/178 (20%), Positives = 60/178 (33%), Gaps = 49/178 (27%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
++ +G + I GP+GSGKST+L A+
Sbjct: 9 SYFVPNDVTFGEGSLTIITGPNGSGKSTILDAI--------------------------- 41
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197
AL R G + A+L + L +GGE +
Sbjct: 42 --------GLALGGAQSATRRRSGVKAG--------CIVAAVSAELIFTRLQLSGGEKEL 85
Query: 198 GQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+AL LA+ + +LDE LDP Q + + +++ K IV ++H
Sbjct: 86 ---SALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV-ITH 139
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 100.0 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 100.0 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 100.0 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 100.0 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.98 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.98 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.98 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.97 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.97 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.96 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.96 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.96 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.96 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.96 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.96 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.96 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.95 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.95 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.93 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.93 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.93 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.93 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.91 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.91 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.9 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.9 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.9 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.89 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.89 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.89 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.88 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.87 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.86 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.85 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.85 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.84 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.84 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.82 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.8 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.79 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.73 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.72 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.71 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.71 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.71 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.67 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.65 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.64 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.63 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.62 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.59 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.59 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.57 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.57 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.54 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.53 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.52 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.51 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.47 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.47 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.47 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.47 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.45 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.45 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.44 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.42 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.42 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.39 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.39 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.37 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.36 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.35 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.33 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.28 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.25 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.24 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.18 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 99.16 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 99.14 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 99.14 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 99.09 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.08 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 99.07 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 99.01 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 99.0 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.99 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.98 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.97 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.96 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.89 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.88 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.86 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.86 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.81 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.8 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.79 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.78 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.78 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.74 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.72 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.71 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.71 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.7 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.69 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.68 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.67 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.67 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.67 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.65 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.65 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 98.63 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.61 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.59 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.59 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.58 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.58 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.58 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.55 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.53 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 98.52 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 98.51 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.51 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.5 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-69 Score=464.37 Aligned_cols=233 Identities=40% Similarity=0.621 Sum_probs=209.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC-CHHHHhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL-DVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~-~~~~~~~~i 140 (298)
++|+++||+|+|+ +..||+|||++|++||+++|+||||||||||||||+||..|++|+|+++|+++... +...+|+++
T Consensus 1 ~mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 4799999999994 67899999999999999999999999999999999999999999999999877432 456789999
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
|+|||+++|||. ||.||+.+++. ..+.+ +.++++.++|+++||. +..+.||.+|||||||||||||||+.+|+++
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vm 158 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVM 158 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence 999999999996 99999999863 23332 3356688999999997 5799999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 295 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 295 (298)
|+|||||+|||+...++++.+++++++ |.|.|+|||+|.++.+.||||++|++|+|++.|+|+++.. +.++-.+.|+.
T Consensus 159 LFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~~FL~ 237 (240)
T COG1126 159 LFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQFLS 237 (240)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999999876 9999999999999999999999999999999999999864 45666777766
Q ss_pred hc
Q 022337 296 LS 297 (298)
Q Consensus 296 ~~ 297 (298)
..
T Consensus 238 ~i 239 (240)
T COG1126 238 KI 239 (240)
T ss_pred hh
Confidence 43
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-66 Score=465.82 Aligned_cols=233 Identities=41% Similarity=0.628 Sum_probs=213.1
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---H
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---S 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~ 135 (298)
||++++|+|.|... ..+|+||||+|++||++||||+||||||||+||+++|.+|++|+|.++|+++..++.. .
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 68999999999752 3699999999999999999999999999999999999999999999999999877644 5
Q ss_pred HhcceEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 136 LRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
.|++||++||+++|+. .||++|++|++...+.+. .++++.++++.+||+ +..++||.+|||||||||+|||||+.+
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcC
Confidence 5789999999999997 699999999998777532 346799999999997 689999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh-ccCChHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMAL 291 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~-~~~~~~~~ 291 (298)
|+|||+|||||+|||.+.+.++++|+++.++.|.||++|||.|+.++++||||.||++|++++.|+..++. .+++...+
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~ 239 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQ 239 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998874 55677777
Q ss_pred HHhhh
Q 022337 292 RFLQL 296 (298)
Q Consensus 292 ~~~~~ 296 (298)
.|...
T Consensus 240 ~fi~~ 244 (339)
T COG1135 240 EFIGE 244 (339)
T ss_pred HHHHh
Confidence 77653
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-66 Score=454.39 Aligned_cols=233 Identities=38% Similarity=0.624 Sum_probs=216.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+++||+|+|. ++.+++|+||+|++||+++++|||||||||+||+|++|++|++|+|+++|+++.+++..++|++|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 689999999995 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|-|...|||. ||.|||++-+.+.+++. .++++.++++++||++ ++.+++|++|||||+|||.+||||+.+|++||+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 9999999995 99999999887766543 3577999999999975 589999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHhhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQL 296 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 296 (298)
||||++|||.++..+.+.++++.++.|+|||+||||++++.+++|||.+|++|+++..++|+++.. +.++..+.|.+.
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~ 238 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGE 238 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999854 455666666554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=431.27 Aligned_cols=234 Identities=38% Similarity=0.628 Sum_probs=213.0
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHh
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLR 137 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~ 137 (298)
++.|++++|+++| +++.|++|+||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++...+.. ++|
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5689999999999 577899999999999999999999999999999999999999999999999999887753 458
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCccccCC-Cc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLRGK-KL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+++|++||...||.. ||+||+.|+++-+.. +. .++.+..-++.+||.....+.+|++|||||++|++||||++.+|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 899999999999975 999999998754332 22 13446667899999865589999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHHH
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRF 293 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~~ 293 (298)
+++++||||+||||.+...+-++|+++.+..|.|+++||||++.+..+|||++++.+|+|+..|+++++.+..+++.++|
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf 244 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQF 244 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988788888887
Q ss_pred hh
Q 022337 294 LQ 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 245 ~~ 246 (263)
T COG1127 245 FN 246 (263)
T ss_pred hc
Confidence 54
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=441.41 Aligned_cols=220 Identities=40% Similarity=0.593 Sum_probs=203.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++||++.|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.+++.+++.++++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 689999999995 7789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC-CcccHHHHhHhCcccc----C-C-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 143 LFQIPAL-FEGTVVDNIRYGPQLR----G-K-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 143 v~Q~~~l-~~~tv~eni~~~~~~~----~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
|||.+.. ++.||+|-+.+|...+ . . ..+.+.+.++++.+|+. ++.++...+|||||||||.|||||+++|++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~i 159 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPI 159 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence 9999864 4569999999985432 1 1 12344688999999996 699999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||++||..++.+++++++++++++|+|||+|+||++.+.+|||++++|++|++++.|+|+++..
T Consensus 160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 999999999999999999999999998889999999999999999999999999999999999988754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-62 Score=455.51 Aligned_cols=231 Identities=36% Similarity=0.604 Sum_probs=210.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.+.++++||+|.|+ +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++...++ .+|.|
T Consensus 3 ~~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~i 79 (352)
T COG3842 3 KPALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPI 79 (352)
T ss_pred CceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhccc
Confidence 35799999999995 7789999999999999999999999999999999999999999999999999998775 46899
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCc---cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKL---TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
|+|||+..|||. ||+|||+||++..+... .++++.++++.++++ ++.+++|++|||||||||||||||+.+|++|
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence 999999999995 99999999987443222 245899999999997 5899999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 295 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 295 (298)
|||||.|+||.+.+.++...++++.++.|.|.|+||||.+++..++|||++|++|+|...|+|+++... .+.....|.+
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG 238 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIG 238 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999998653 3445555544
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-61 Score=425.01 Aligned_cols=236 Identities=36% Similarity=0.552 Sum_probs=213.2
Q ss_pred CeEEEEeEEEEeCCCC---cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHHHh
Q 022337 62 PKFRVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-VLSLR 137 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~---~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~-~~~~~ 137 (298)
++++++|+++.|+++. ++|++|||+|.+||++||+||||||||||.++|+|+.+|++|+|.++|+++.... ...++
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999996544 4999999999999999999999999999999999999999999999998775542 23567
Q ss_pred cceEEEeCCCC--CCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPA--LFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~--l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+.|.+|||||. +=|. ||.+-|.-++...+.+..++++.++++.+|+++.+++++|++|||||+|||||||||+.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 88999999995 4454 99999998877666655667799999999999899999999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHH
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRF 293 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~ 293 (298)
+||||||||+||+..+.+++++|.+++++.+.|.||||||+..+..+||||+||++|++++.++..++... .|++.+.+
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~L 241 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTREL 241 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654 67788877
Q ss_pred hhhc
Q 022337 294 LQLS 297 (298)
Q Consensus 294 ~~~~ 297 (298)
++.+
T Consensus 242 l~a~ 245 (252)
T COG1124 242 LEAV 245 (252)
T ss_pred HHhh
Confidence 7654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=424.92 Aligned_cols=222 Identities=36% Similarity=0.547 Sum_probs=203.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhc
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LSLRR 138 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~~~~~ 138 (298)
.+|+++||++.|++++++|+||||+|++||+++||||||||||||||+|+|+.+|++|+|.++|.++..++. .++|+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 579999999999878899999999999999999999999999999999999999999999999999877663 45678
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCcccc--------CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
++||+||+++|.+. ||.+|+..|...+ +. ..++..+.++|+++|+. +...++..+|||||+|||+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHHHH
Confidence 99999999999985 9999999874321 11 12345688999999997 5788899999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+++|+++|.|||+|+|||.+.+.+|+.|++++++.|.|+|+..|+++.+.+|||||+-|++|+|+.+|+++++.+
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-61 Score=423.78 Aligned_cols=211 Identities=39% Similarity=0.611 Sum_probs=187.7
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 136 (298)
+++++||++.|..+ ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|+++|+++..++.. .+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 46899999999644 2699999999999999999999999999999999999999999999999999887643 33
Q ss_pred -hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 -RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 -~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+++||||||+++|++. ||.|||.+++.+.+... ..+++.++++.+|+.+...+++|.+|||||||||||||||+++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 4679999999999985 99999998765554432 3566888999999975444488999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~ 274 (298)
|+++|+||||++||.++.+.++++|.+++++.|+|+||||||...+ .+|||++.|++|++.
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~i~l~dG~~~ 221 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGKIE 221 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEEEEEeCCeee
Confidence 9999999999999999999999999999888899999999999877 589999999999953
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-61 Score=446.24 Aligned_cols=230 Identities=37% Similarity=0.574 Sum_probs=209.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++||+|.|++. .+++++||+|++||+++|+||||||||||||+|+||.+|++|+|+|+|++++++++. +|.|+
T Consensus 2 ~~i~l~~v~K~yg~~-~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~ia 78 (338)
T COG3839 2 AELELKNVRKSFGSF-EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGIA 78 (338)
T ss_pred cEEEEeeeEEEcCCc-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCEE
Confidence 469999999999532 399999999999999999999999999999999999999999999999999998765 58899
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+|||++.|||. ||+||++|+++..+.+ ..++++.++++.++++ ++++++|.+|||||||||||||||+++|+++||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 99999999995 9999999998876543 3457899999999996 699999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 295 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 295 (298)
|||+|+||+..+..+...|+++.++.|.|+|+||||..++..++|||.+|++|+|.+.|+|.++.+ +.+.....|.+
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG 235 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIG 235 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhhhcC
Confidence 999999999999999999999998889999999999999999999999999999999999999864 33444444443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-61 Score=425.04 Aligned_cols=208 Identities=39% Similarity=0.629 Sum_probs=189.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++++++.|+ +..+|+|+||+|.+||+++|+||||||||||||+|+||.+|++|+|.++|+++... ...++
T Consensus 2 ~~l~i~~v~~~f~-~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 2 ALLEIEGVSKSFG-GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred ceEEEEeeEEEeC-ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4689999999995 57899999999999999999999999999999999999999999999999988432 35799
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||||++.|||. ||+||+.+++...+.. +..+++.++++.+||. .+.+++|++|||||||||+|||||+.+|++|||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999985 9999999998765432 2345789999999997 589999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEe
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEV 276 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~ 276 (298)
||||++||..++..+.+.|.++.++.++||++||||++++..++|||++|.+ |+|...
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~ 214 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEE 214 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeE
Confidence 9999999999999999999999888899999999999999999999999999 555443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-60 Score=422.49 Aligned_cols=217 Identities=32% Similarity=0.513 Sum_probs=194.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++|+++|++++|+++ +||+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.... -+.+|
T Consensus 2 ~~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~---~~~~I 77 (254)
T COG1121 2 MPMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR---KRLRI 77 (254)
T ss_pred CcEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc---cCCeE
Confidence 3579999999999644 7999999999999999999999999999999999999999999999998875432 14689
Q ss_pred EEEeCCCCC---CcccHHHHhHhCccccC-----C-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 141 GMLFQIPAL---FEGTVVDNIRYGPQLRG-----K-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 141 g~v~Q~~~l---~~~tv~eni~~~~~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|||||...+ ||.||+|.+.++...+. . ..+++++.++|+.+|+. ++.++.+++|||||+|||.|||||++
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~ 156 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQ 156 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhcc
Confidence 999997643 68899999999854221 1 22457799999999997 69999999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|++|+|||||+|+|+.++..++++|++++++ |+||+|||||++.+.++||+|+.| +++++..|+++++.+
T Consensus 157 ~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999999999999999999887 999999999999999999999999 568889999998765
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=421.11 Aligned_cols=222 Identities=40% Similarity=0.601 Sum_probs=205.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC-CCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT-DLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~-~~~~~~~~~~i 140 (298)
++++++|++++|+++..+|+++||+|++||+++|+||||||||||+++++|+++|++|.|.++|.++. ..+..++|+++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 47999999999976668999999999999999999999999999999999999999999999999987 35667889999
Q ss_pred EEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
|||||+| ++|..||.|.++|++...+.+. .++++.++++.+++. +++++.|++|||||||||+||.+|+.+|++|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 9999999 5777899999999988766543 346789999999997 5799999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+||+.+++++++.++++.++.|+|+|++|||++.+..+|||+++|++|+++.+|+|.++..
T Consensus 161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999999988768999999999999999999999999999999999988765
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-60 Score=401.36 Aligned_cols=214 Identities=33% Similarity=0.523 Sum_probs=197.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~~~ 139 (298)
||+++||+|.|+++.++|+|+||+|++||++-|+||||||||||+|+|++..+|++|+|+++|.++..+... -+|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 689999999999887799999999999999999999999999999999999999999999999999876543 46999
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
||+||||..|.+. ||+||++|++...+... .++++.++|+.+||. +..+..|.+|||||||||+||||++++|++|
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 9999999998875 99999999988777643 356799999999997 5788999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
|.||||.+|||....++++++.++.. .|.||+|.|||.+.+.++--|++.+++|+++.+..
T Consensus 160 lADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred eecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999976 49999999999999999999999999999987643
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-60 Score=406.99 Aligned_cols=230 Identities=45% Similarity=0.661 Sum_probs=205.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc-----cEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-----GTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~-----G~I~i~g~~i~~~--~~ 133 (298)
.+.++++||+++| +.+.+|+|||++|++++++|+|||||||||||||+++++.+... |+|.++|+++.+. +.
T Consensus 5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 4569999999999 47789999999999999999999999999999999999998765 9999999999764 57
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.++|++||+|||.|+.||+|++||++||++.++... -++.++..|+...|.+ +.+++.+..||||||||++||||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence 789999999999999999999999999998877543 2355788888888753 35667889999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~ 287 (298)
|+.+|+|||||||||+|||.+...+-+++.++++ .-|||+|||+|..+.+++|+..++..|+++|.|+.+++.. +.+
T Consensus 164 lAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~ 241 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKH 241 (253)
T ss_pred HhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccH
Confidence 9999999999999999999999999999999975 6899999999999999999999999999999999988754 444
Q ss_pred hHHHHH
Q 022337 288 PMALRF 293 (298)
Q Consensus 288 ~~~~~~ 293 (298)
...+.|
T Consensus 242 ~~TedY 247 (253)
T COG1117 242 KRTEDY 247 (253)
T ss_pred HHHHHH
Confidence 445444
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-59 Score=437.75 Aligned_cols=231 Identities=38% Similarity=0.612 Sum_probs=203.6
Q ss_pred eEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q 022337 63 KFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 136 (298)
||+++|++++|++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999953 13699999999999999999999999999999999999999999999999999876543 34
Q ss_pred hcceEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
|++|||+||++.+++ .||+||+.++....+.. ..++++.++++.+|+. ++.++++.+|||||||||+|||||+.+|
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 778999999999997 59999999876443322 2345688999999997 5789999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHH
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALR 292 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~ 292 (298)
++|||||||++||+.++..++++|++++++.|.|||+|||+++.+.++||+|++|++|++++.|+++++.. +.+...+.
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~~~ 239 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQK 239 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHHHH
Confidence 99999999999999999999999999987668999999999999999999999999999999999988753 33444444
Q ss_pred Hh
Q 022337 293 FL 294 (298)
Q Consensus 293 ~~ 294 (298)
|.
T Consensus 240 ~~ 241 (343)
T TIGR02314 240 FI 241 (343)
T ss_pred HH
Confidence 43
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-59 Score=421.02 Aligned_cols=218 Identities=39% Similarity=0.610 Sum_probs=199.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE---eCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR---DITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~---~i~~~~~~~~~~~ 139 (298)
+|+++|+++.| +...+++|||++|+.||.+|++||||||||||||+|+||..|++|.|.++|+ |....+ ...++
T Consensus 2 ~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDRK 78 (345)
T ss_pred ceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhcc
Confidence 58999999999 4678999999999999999999999999999999999999999999999999 554432 33578
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCC----CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGK----KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
||||||++.+|+ +||.|||+||+..+.. ...+.++.++|+.++|+ .+.++||.+||||||||||+||||+.+|+
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 999999999998 5999999999865422 12356789999999997 68999999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+||||||+++||..-+.++...|+++.++.|.|.++||||.+++.++||||++|++|+|...|+++++.+
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999999999988889999999999999999999999999999999999999854
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=432.23 Aligned_cols=229 Identities=30% Similarity=0.526 Sum_probs=203.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|++++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. +++|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 699999999994356799999999999999999999999999999999999999999999999999776543 478999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
|||++.+|+. ||+||+.|+....+.. ...+++.++++.++++ ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999985 9999999986543322 1235688999999996 6899999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||++||+.+++.+.+.|+++.++.|.|+|+||||++++..+||++++|++|++++.|+++++.+. .+.+...|.
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~ 235 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFI 235 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHHHHHc
Confidence 999999999999999999999876699999999999999999999999999999999999988543 334444443
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=408.36 Aligned_cols=225 Identities=42% Similarity=0.657 Sum_probs=196.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhcce
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LSLRRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~~~~~~i 140 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..+++.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 47899999995 5679999999999999999999999999999999999999999999999999876543 3567789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|+||++.+|+. |+.||+.++.... ... ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 158 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALARALALDPELL 158 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998885 9999998864321 111 1234578899999996 5678999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
||||||+|||+.+++.+++.|++++++.|+|||++|||++.+..+||++++|++|++++.|+++++....+++.
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 232 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPLV 232 (235)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCCChhh
Confidence 99999999999999999999999876458999999999999999999999999999999999888765434443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=428.46 Aligned_cols=231 Identities=31% Similarity=0.538 Sum_probs=205.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .++++
T Consensus 4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 45899999999995 5679999999999999999999999999999999999999999999999999976553 35789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|||||++.+|+. ||+||+.|+...++.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999985 9999999986543322 2246788999999996 58899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHhh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 295 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 295 (298)
|||||++||+..+.++.+.|+++.++.|.|+|+||||++++..+||||++|++|++++.|+++++... .+.....|.+
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g 238 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMG 238 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchHHHHhcC
Confidence 99999999999999999999999876689999999999999999999999999999999999987543 3344444443
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-57 Score=427.31 Aligned_cols=229 Identities=38% Similarity=0.583 Sum_probs=204.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++.+|
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig 79 (353)
T TIGR03265 3 PYLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYG 79 (353)
T ss_pred cEEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5799999999995 5679999999999999999999999999999999999999999999999999976554 367899
Q ss_pred EEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|+||++.+|+ .||+||+.|+...++.. ...+++.++++.++|+ ++.++++.+|||||||||+|||||+.+|++|||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999998 49999999986543322 2245789999999997 589999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
||||++||+..++.+.+.|+++.++.|.|+|+||||++++..+|||+++|++|++++.|+++++.+. .+.....|.
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~ 235 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFV 235 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHhc
Confidence 9999999999999999999999876799999999999999999999999999999999999988643 334444443
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-57 Score=419.68 Aligned_cols=220 Identities=35% Similarity=0.591 Sum_probs=200.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++||+++|++++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... ..+.++++|
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 3588999999995357899999999999999999999999999999999999999999999999998653 457788999
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|+||++.+++. |++||+.|...+++.. ..++++.++++.++|.+ ..++++.+||+|||||++||+||+++|++|||
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999885 9999999987766643 34567999999999974 55788999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||||+||||.++.++++.|++++++.|+||+++||.++++..+||||++|++|++++.|+++++.
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999998874489999999999999999999999999999999988764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-57 Score=418.15 Aligned_cols=220 Identities=30% Similarity=0.489 Sum_probs=197.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++||+|+|+ +..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...+ ...++++
T Consensus 5 ~~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 5 VAPIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred CceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 45899999999995 568999999999999999999999999999999999999999999999999986543 3567889
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
||+||++.+|+ .|++||+.+....++... ..+++.++++.+++. +..++++.+||||||||++|||||+++|++||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999987 599999987544433321 234677899999996 57889999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|||+.+++.+++.|++++++ |+|||++||+++++..+||||++|++|++++.|+++++..
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999754 9999999999999999999999999999999999988743
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=426.01 Aligned_cols=231 Identities=33% Similarity=0.568 Sum_probs=204.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++.
T Consensus 11 ~~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ 87 (375)
T PRK09452 11 LSPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA--ENRH 87 (375)
T ss_pred CCceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 456799999999995 5679999999999999999999999999999999999999999999999999976654 3578
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+|+. ||+||+.|+...++... ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999985 99999999865433322 235688899999997 6899999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
||||||++||+..++.+.+.|+++.++.|.|+|+||||++++..+||||++|++|++++.|+++++... .+.....|.
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~~a~~~ 245 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFI 245 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhc
Confidence 999999999999999999999999876799999999999999999999999999999999999987543 334444443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=452.94 Aligned_cols=249 Identities=34% Similarity=0.541 Sum_probs=211.3
Q ss_pred hhHHHHHHhhhccCCCCCcccc--ccCCCCCeEEEEeEEEEeCCCC-cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHH
Q 022337 34 SLFRDEVREHLLTVPGEAEAED--DNQIQKPKFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL 110 (298)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~y~~~~-~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l 110 (298)
....+++.+.+...++...... ..+.....++++|++|+|+.+. ++|+|+||+|++||++||+|+||||||||+|+|
T Consensus 440 ~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL 519 (709)
T COG2274 440 KVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLL 519 (709)
T ss_pred HHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHH
Confidence 3344556665554333222111 1122344699999999997653 599999999999999999999999999999999
Q ss_pred hcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchh---
Q 022337 111 NRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF--- 187 (298)
Q Consensus 111 ~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 187 (298)
+|+++|++|+|++||.|+...+...+|++||||+|++.+|.+|++||+.++.. ..+.+++.++++..|+++..
T Consensus 520 ~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p----~~~~e~i~~A~~~ag~~~fI~~l 595 (709)
T COG2274 520 LGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP----EATDEEIIEAAQLAGAHEFIENL 595 (709)
T ss_pred hcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998742 23467888898888886432
Q ss_pred -------hcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh
Q 022337 188 -------LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260 (298)
Q Consensus 188 -------~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~ 260 (298)
..+.+..||||||||++|||||+++|+|||||||||+||+.+++.+++.|.++.+ |+|+|+|||+++.+.
T Consensus 596 P~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~- 672 (709)
T COG2274 596 PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIR- 672 (709)
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhh-
Confidence 2456789999999999999999999999999999999999999999999999964 899999999999985
Q ss_pred hcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 261 IADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 261 ~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
.||||+||++|+|+++|+++++.+....+
T Consensus 673 ~adrIiVl~~Gkiv~~gs~~ell~~~g~y 701 (709)
T COG2274 673 SADRIIVLDQGKIVEQGSHEELLAQGGLY 701 (709)
T ss_pred hccEEEEccCCceeccCCHHHHHHhcChH
Confidence 69999999999999999999997753333
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=442.22 Aligned_cols=247 Identities=32% Similarity=0.526 Sum_probs=210.9
Q ss_pred HHHHhhhccCCCCCccccccC-CCCCeEEEEeEEEEeCCCC--cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 38 DEVREHLLTVPGEAEAEDDNQ-IQKPKFRVRELRKESDDGA--PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~~y~~~~--~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++.++..|.........+ .....|+++||+|.|+.+. ++|+|+||+|+|||++|||||||+||||+.++|..+|
T Consensus 439 ~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 439 ERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred HHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345555554444222211111 2345699999999998553 6999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc---------
Q 022337 115 EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS--------- 185 (298)
Q Consensus 115 ~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 185 (298)
+|++|+|.+||+||++++...+|++||+|.|+|.||..||+|||.||.. ..+++++..+.++.+.++
T Consensus 519 ~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~----~~t~e~i~~AAk~ANah~FI~~~p~gY 594 (716)
T KOG0058|consen 519 DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD----NATDEEIEAAAKMANAHEFITNFPDGY 594 (716)
T ss_pred CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHhCcccc
Confidence 9999999999999999999999999999999999999999999999975 345677888888777642
Q ss_pred -hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 186 -SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 186 -~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
...++++.+||||||||+||||||++||.||||||.||+||.+++..+.+.|.+..+ ++|||+|.|+++.+++ ||+
T Consensus 595 ~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~-Ad~ 671 (716)
T KOG0058|consen 595 NTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRH-ADQ 671 (716)
T ss_pred ccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhh-ccE
Confidence 234567889999999999999999999999999999999999999999999999876 6999999999999975 999
Q ss_pred EEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 265 VCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 265 v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
|+|+++|++++.|+.+++......++.
T Consensus 672 Ivvi~~G~V~E~G~h~eLl~~~~gly~ 698 (716)
T KOG0058|consen 672 IVVIDKGRVVEMGTHDELLSKPNGLYA 698 (716)
T ss_pred EEEEcCCeEEecccHHHHhhCcccHHH
Confidence 999999999999999999775433333
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=419.15 Aligned_cols=235 Identities=27% Similarity=0.423 Sum_probs=204.5
Q ss_pred CCeEEEEeEEEEeCC------------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 61 KPKFRVRELRKESDD------------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~------------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
+++|+++||+++|+. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 468999999999952 13699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHH---HHhcceEEEeCCC--CCCc-ccHHHHhHhCcccc--CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChh
Q 022337 129 TDLDVL---SLRRKVGMLFQIP--ALFE-GTVVDNIRYGPQLR--GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVG 198 (298)
Q Consensus 129 ~~~~~~---~~~~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 198 (298)
...+.. .++++++||||++ .+++ .|+.||+.++...+ ... ...+++.++++.+++.++..++++++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 776543 3567899999998 4776 59999998764322 111 123557889999999645789999999999
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 199 qkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
|||||+|||||+.+|++||+||||++||+.++.+++++|+++.++.|.|+|+||||++.+..+||||++|++|+|++.|+
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~ 245 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGT 245 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999977668999999999999999999999999999999999
Q ss_pred hhhhhc-cCChHHHHHhh
Q 022337 279 PDLLSE-AKHPMALRFLQ 295 (298)
Q Consensus 279 ~~~~~~-~~~~~~~~~~~ 295 (298)
++++.. +.|++.+.+..
T Consensus 246 ~~~i~~~~~~py~~~l~~ 263 (331)
T PRK15079 246 YDEVYHNPLHPYTKALMS 263 (331)
T ss_pred HHHHHcCCCCHHHHHHHh
Confidence 988754 45677766553
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=421.49 Aligned_cols=228 Identities=35% Similarity=0.569 Sum_probs=201.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .++++||
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 589999999995 5679999999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EeCCCCCCcc-cHHHHhHhCcccc----CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLR----GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~----~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||++.+|+. ||+||+.|+.... +.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999985 9999999986431 111 1245788999999996 588999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||||||++||+.+++.+.+.|+++.++.|.|+|+||||++++..+||||++|++|++++.|+++++... .+.+...|.
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~ 237 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFM 237 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhc
Confidence 9999999999999999999999999876689999999999999999999999999999999999988543 334444443
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-57 Score=408.20 Aligned_cols=232 Identities=37% Similarity=0.619 Sum_probs=209.4
Q ss_pred eEEEEeEEEEeCCC-----------------------CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc
Q 022337 63 KFRVRELRKESDDG-----------------------APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG 119 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-----------------------~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G 119 (298)
.++++|++|-|+.+ ..-++|+||+|++||++.|+|-||||||||+|++++|++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 58888998888421 1147899999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHH----hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCC
Q 022337 120 TVFLDGRDITDLDVLSL----RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTG 192 (298)
Q Consensus 120 ~I~i~g~~i~~~~~~~~----~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~ 192 (298)
+|+++|+++..++..++ |+++++|||++.|+|. ||.||+.||++..+.+. .++++.++++.+||+ .+.+++|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE-GYADKYP 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch-hhhhcCc
Confidence 99999999998886544 3579999999999986 99999999998887653 346789999999997 5899999
Q ss_pred CCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.++.++.++||||||||++++.++.|||.+|++|+
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCe
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EEEeeChhhhh-ccCChHHHHHhh
Q 022337 273 IVEVLKPDLLS-EAKHPMALRFLQ 295 (298)
Q Consensus 273 i~~~g~~~~~~-~~~~~~~~~~~~ 295 (298)
|+..|+|+++. .+.+.|...|.+
T Consensus 243 ivQ~Gtp~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 243 IVQVGTPEEILLNPANDYVRDFVR 266 (386)
T ss_pred EEEeCCHHHHHcCccHHHHHHHHh
Confidence 99999999985 445667777653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=422.09 Aligned_cols=218 Identities=32% Similarity=0.493 Sum_probs=198.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc--cEEEECCEeCCCCCHHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS--GTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~--G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++|++++|+ +..+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|.++|+++...+. .++.+
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~i 81 (362)
T TIGR03258 5 GIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGL 81 (362)
T ss_pred EEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCE
Confidence 489999999995 5679999999999999999999999999999999999999999 999999999876553 35789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
||+||++.+|+. ||+||+.|+...++.. ...+++.++++.++|. ++.++++.+|||||||||+|||||+.+|++||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999985 9999999986543322 1235688999999997 58899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKH-GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~-g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||++||+..+.++.+.|+++.++. |.|+|+||||++++..+||||++|++|+++..|+++++..
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999998765 7999999999999999999999999999999999998854
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-56 Score=418.43 Aligned_cols=221 Identities=38% Similarity=0.600 Sum_probs=197.5
Q ss_pred eEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q 022337 63 KFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 136 (298)
||+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++.. .+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999952 35799999999999999999999999999999999999999999999999999776543 34
Q ss_pred hcceEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
++++||+||++.+|+ .|++||+.++....+... ..+++.++++.+|+. +..++++.+|||||||||+|||||+.+|
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 678999999999887 599999998754333221 235678899999996 5789999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|||||||+|||+.++..+++.|++++++.|+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999976668999999999999999999999999999999999988754
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-56 Score=417.52 Aligned_cols=221 Identities=28% Similarity=0.450 Sum_probs=197.0
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++||+++|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+ ...++.
T Consensus 38 ~~~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ 115 (340)
T PRK13536 38 STVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARAR 115 (340)
T ss_pred CceeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhcc
Confidence 355799999999995 567999999999999999999999999999999999999999999999999986543 456788
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+++ .|+.||+.+....++... ..+++.++++.+++. +..++++.+||||||||++|||||+++|++|
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999886 599999986433333221 234577889999997 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+||||.+++.+++.|++++++ |+|||++||+++++.++||||++|++|+++..|+++++..
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999764 9999999999999999999999999999999999988743
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=388.37 Aligned_cols=219 Identities=33% Similarity=0.538 Sum_probs=200.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|+++.+++|+|+.-.++++|+||++++||++||+|||||||||+||+|++++.|++|.|++||.|..+. +...|++||.
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 689999999996544599999999999999999999999999999999999999999999999998764 4568999999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|.+..+|. .|++|||.|...+++... .++++.++.+.+++. +.+++++.+||.||||||+|||||+++|++++||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 997777886 599999998876665533 367789999999996 6899999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||..+++.+.+.+++++++ |++||++||+|++++.+||||+++++|+++..|+++.+..
T Consensus 159 EP~sGLDi~~~r~~~dfi~q~k~e-gr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 159 EPTSGLDIRTRRKFHDFIKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred CCCCCccHHHHHHHHHHHHHhhcC-CcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999998654 9999999999999999999999999999999999988744
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=397.12 Aligned_cols=229 Identities=45% Similarity=0.749 Sum_probs=202.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 589999999995 5679999999999999999999999999999999999999999999999999876665566788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+||++.+|+.|++||+.++....+ ...+++.++++.++++.++.++++.+||||||||++|||||+.+|++|||||||
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKG--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcC--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999888899999987643222 224567889999999634678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHh
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~ 294 (298)
++||+.+++.+.+.|++++++.|.|||++|||++.+..+||++++|++|++++.++++++.. +.+.+...|.
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 232 (241)
T PRK14250 160 SALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFI 232 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 99999999999999999876558999999999999999999999999999999999988754 2344555554
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=420.92 Aligned_cols=221 Identities=35% Similarity=0.573 Sum_probs=200.3
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...+. .++.
T Consensus 16 ~~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 16 LTPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred CCceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 356799999999995 5679999999999999999999999999999999999999999999999999876553 4678
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+|+. ||.||+.|+....+.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lL 171 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLL 171 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999985 9999999986533322 2245688999999996 5889999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||++||+..++.+.+.|+++.++.|.|+|+||||++++..+|||+++|++|++++.|+++++..
T Consensus 172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 99999999999999999999999877679999999999999999999999999999999999998754
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-57 Score=397.88 Aligned_cols=232 Identities=33% Similarity=0.634 Sum_probs=206.9
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ 139 (298)
.+++++++++++| ++-.+++|+||++++||+++||||||||||||+++|+|+++|++|+|.++|++|..+++.++ |..
T Consensus 2 ~~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 2 TPLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred Cceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 3578999999999 57889999999999999999999999999999999999999999999999999999887655 567
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcccc----------C----CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLR----------G----KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~----------~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~ 204 (298)
|+..||.+.+|+. ||.||++.+...+ . .....+++.++|+.+||. +..+++..+||+|||+|+.
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~LsyG~qR~LE 159 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSYGQQRRLE 159 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCChhHhHHHH
Confidence 9999999999985 9999999873311 0 112246788999999997 5899999999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+.+|++|+||||.+||.+....++.+.|+++.++.|.||++|.|||+.+..+||||+||+.|+++++|+|+++..
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999999999999999999988668999999999999999999999999999999999999876
Q ss_pred cCChHHHHHhh
Q 022337 285 AKHPMALRFLQ 295 (298)
Q Consensus 285 ~~~~~~~~~~~ 295 (298)
+ ....+.|++
T Consensus 240 d-p~VieAYLG 249 (250)
T COG0411 240 N-PRVIEAYLG 249 (250)
T ss_pred C-HHhHHHhcC
Confidence 3 234555543
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=405.94 Aligned_cols=220 Identities=34% Similarity=0.570 Sum_probs=196.5
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++++|+++.|+++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+...+++.+|
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 47999999999954457999999999999999999999999999999999999999999999999987666666778899
Q ss_pred EEeCCC--CCCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 142 MLFQIP--ALFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 142 ~v~Q~~--~l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|+||++ .++..||.||+.++....+.. ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999998 456679999999875432222 1235678899999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|||||++||+.++..+++.|++++++ |.|||++|||++.+.++|||+++|++|++++.|+++++.
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999765 899999999999999999999999999999999987653
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=393.93 Aligned_cols=209 Identities=31% Similarity=0.514 Sum_probs=185.1
Q ss_pred eEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 022337 63 KFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~~ 138 (298)
|++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 58999999999543 4699999999999999999999999999999999999999999999999998654432 3567
Q ss_pred ceEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 139 KVGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 139 ~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
.++|+||++.+|+ .|+.||+.++....+.. ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 8999999999887 59999999864332221 1245688899999996 578899999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
|||||||+|||+.+++.+.+.|++++++ |.|||++|||++.+..+||++++|++|++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999998754 89999999999999999999999999975
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-55 Score=441.14 Aligned_cols=219 Identities=32% Similarity=0.472 Sum_probs=195.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++++||++.|++++++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+++...+|++|+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 5999999976655678999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|+|++.+|++|++|||.++.. +.+++++.++++.+++++ ....+.+..||||||||++|||||+++
T Consensus 428 v~Q~~~LF~~TI~eNI~~g~~----~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 428 VGQNPQLPHGTLRDNVLLGNP----DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred ecCCCcCCCcCHHHHhhcCCC----CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999731 345678888888877642 233445678999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
|+|||||||||+||+.+++.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++......+
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~eL~~~~~~y 577 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYAELSQAGGLF 577 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHHHHHhcchHH
Confidence 999999999999999999999999998854 799999999999886 59999999999999999999987643333
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=396.73 Aligned_cols=218 Identities=39% Similarity=0.602 Sum_probs=193.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFG-DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEEeEEEEEC-CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 489999999995 4679999999999999999999999999999999999999999999999999865432 2567999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCC----C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGK----K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++|++.+++ .|+.||+.++....+. . ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999887 5999999986432211 1 1234577889999996 578899999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+.+.|.+++++.|+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999976558999999999999999999999999999999999988754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-56 Score=393.21 Aligned_cols=216 Identities=30% Similarity=0.530 Sum_probs=191.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++++++|+
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEe
Confidence 47899999995 56799999999999999999999999999999999999999999999999987643 34556789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+++. |++||+.++...++.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999988875 9999998864333322 1245678899999996 57889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||++||+.+++.+.+.|.++.++.|+|||++|||++.+..+|||+++|++|++++.++++++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999765589999999999999999999999999999998877653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-56 Score=420.41 Aligned_cols=220 Identities=40% Similarity=0.636 Sum_probs=195.9
Q ss_pred EeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH----hcceEEEeCCC
Q 022337 72 ESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL----RRKVGMLFQIP 147 (298)
Q Consensus 72 ~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~----~~~ig~v~Q~~ 147 (298)
+| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+..++ ++++||+||++
T Consensus 2 ~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46 45679999999999999999999999999999999999999999999999999988776655 67899999999
Q ss_pred CCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCC
Q 022337 148 ALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224 (298)
Q Consensus 148 ~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~ 224 (298)
.+|+. ||+||+.++....+... ..+++.++++.+||+ .+.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99985 99999998865444322 245688999999996 689999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHH
Q 022337 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRF 293 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~ 293 (298)
|||.+++.+.+.+.++.++.|+|||+||||++++.++||||++|++|++++.|+++++... .+.+...|
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~ 229 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEF 229 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHHH
Confidence 9999999999999999766689999999999999999999999999999999999987543 33444444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-56 Score=396.75 Aligned_cols=219 Identities=37% Similarity=0.580 Sum_probs=193.2
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC---HHHHhcce
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSLRRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~---~~~~~~~i 140 (298)
++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ...+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999953267999999999999999999999999999999999999999999999999987655 34567789
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccc--------cCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQL--------RGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~--------~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+|+||++.+|+ .|++||+.++... .+. ....+++.++++.+++. +..++++.+|||||||||+|||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHHHHH
Confidence 99999998887 5999999875321 011 11235678899999996 578899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+.+|++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+..+||++++|++|++++.|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999997655899999999999999999999999999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=413.26 Aligned_cols=235 Identities=27% Similarity=0.454 Sum_probs=204.7
Q ss_pred CCeEEEEeEEEEeCC---------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC
Q 022337 61 KPKFRVRELRKESDD---------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL 131 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~---------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~ 131 (298)
+++|+++||++.|.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++..+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 468999999999952 24699999999999999999999999999999999999999999999999999776
Q ss_pred CHH---HHhcceEEEeCCC--CCCc-ccHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHH
Q 022337 132 DVL---SLRRKVGMLFQIP--ALFE-GTVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR 202 (298)
Q Consensus 132 ~~~---~~~~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQR 202 (298)
+.. .+|++++||||++ .+++ .|+.+++..+.... +.. ...+++.++++.+|+++...++++++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 543 4567899999998 4666 49999987653322 111 2245688999999996456799999999999999
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|+|||||+.+|++||+||||++||+.++..++++|+++.++.|.|+|+||||++.+.++||||++|++|+|++.|+++++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999876799999999999999999999999999999999999887
Q ss_pred hc-cCChHHHHHhh
Q 022337 283 SE-AKHPMALRFLQ 295 (298)
Q Consensus 283 ~~-~~~~~~~~~~~ 295 (298)
.. +.|++.+.++.
T Consensus 243 ~~~p~hpyt~~ll~ 256 (327)
T PRK11308 243 FNNPRHPYTQALLS 256 (327)
T ss_pred hcCCCCHHHHHHHH
Confidence 54 46777776654
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=406.59 Aligned_cols=221 Identities=38% Similarity=0.638 Sum_probs=194.8
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC--HHHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD--VLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~--~~~~ 136 (298)
.++++||++.|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 38999999999632 36999999999999999999999999999999999999999999999999987543 2456
Q ss_pred hcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCC-chhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 137 RRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLD-SSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 137 ~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
++++||+||++ .+|+.||+||+.++....+... ..+++.++++.+|+. .++.++++.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 78899999998 4567799999998754333221 234678899999995 146789999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||||++|++|++++.|+++++.
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999997656899999999999999999999999999999999988764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=419.78 Aligned_cols=228 Identities=33% Similarity=0.525 Sum_probs=200.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .++++||
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 589999999995 5679999999999999999999999999999999999999999999999999876553 3567999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+|+. ||+||+.|+....+.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999975 9999999876433322 1235688999999996 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||++||+.+++.+.+.|+++.++.|.|+|+||||++++..+||++++|++|++++.|+++++... .+.....|.
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~ 234 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFI 234 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhc
Confidence 999999999999999999999766689999999999999999999999999999999999887542 333444443
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=422.19 Aligned_cols=220 Identities=30% Similarity=0.455 Sum_probs=199.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+..++++++|
T Consensus 2 ~~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4799999999995 578999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEeCCCCCCc-ccHHHHhHhCcccc----C-C-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLR----G-K-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~----~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
|++|++.++. .|++||+.++...+ . . ..+.+++.++++.+++. ++.++++.+||||||||++|||||+++|+
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999998754 69999999875321 1 1 12345688999999996 68899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.++.+++++|+++++ .|+|||++|||++++.++|||+++|++|++++.|+++++..
T Consensus 160 iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999999999999999986 48999999999999999999999999999999999988654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=406.58 Aligned_cols=221 Identities=35% Similarity=0.564 Sum_probs=195.0
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC----CCHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----LDVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~----~~~~ 134 (298)
|++++|+++.|+++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.. ....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 58999999999633 259999999999999999999999999999999999999999999999999853 2234
Q ss_pred HHhcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 135 ~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
.+++.+||+||++ .+|+.||.||+.|+....+... .++++.++++.+++...+.++++.+||||||||++|||||+
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 5678899999998 5777899999998764333221 23467889999999534778999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++.+..+||||++|++|++++.|+++++..
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999999999999999999999998764 8999999999999999999999999999999999988643
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=407.04 Aligned_cols=220 Identities=39% Similarity=0.597 Sum_probs=194.4
Q ss_pred EEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC----CCHHH
Q 022337 64 FRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----LDVLS 135 (298)
Q Consensus 64 l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~----~~~~~ 135 (298)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 8999999999632 469999999999999999999999999999999999999999999999999853 23345
Q ss_pred HhcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 136 LRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 136 ~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
.++++||+||++ .+++.||.||+.|+....+... ..+++.++++.++|...+.++++.+|||||||||+|||||+.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~ 162 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM 162 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 677899999997 4677799999998754333222 234678899999996456789999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|++|||||||+|||+.++..++++|++++++.|.|||++|||++.+..+||||++|++|++++.|+++++.
T Consensus 163 ~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999997666899999999999999999999999999999999988764
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=397.00 Aligned_cols=220 Identities=39% Similarity=0.601 Sum_probs=193.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~~~~~~ 139 (298)
|++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..+++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 57899999999524679999999999999999999999999999999999999999999999999865543 235678
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCcccc--------CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
++|+||++.+++ .|++||+.++.... +. ....+++.++++.+++. +..++++.+|||||||||+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998887 59999998753211 11 12235678899999996 57889999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|+.+|++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+.++||++++|++|++++.|+++++.
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 999999999999999999999999999999987655899999999999999999999999999999999988763
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=410.20 Aligned_cols=223 Identities=33% Similarity=0.498 Sum_probs=196.0
Q ss_pred CCCeEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----
Q 022337 60 QKPKFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---- 131 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~---- 131 (298)
..++|+++|+++.|+++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 45689999999999632 3699999999999999999999999999999999999999999999999988542
Q ss_pred ------------CHHHHhcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCC
Q 022337 132 ------------DVLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEI 195 (298)
Q Consensus 132 ------------~~~~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~L 195 (298)
....+++++|||||++ .+|+.|++||+.++....+... ..+++.++++.++++..+.++.+.+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 177 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL 177 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 2345678899999998 5777899999998753222221 23467889999999635788999999
Q ss_pred ChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 196 SgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|.++.++ |.|||+||||++.+..+|||+++|++|++++
T Consensus 178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999998754 8999999999999989999999999999999
Q ss_pred eeChhhhh
Q 022337 276 VLKPDLLS 283 (298)
Q Consensus 276 ~g~~~~~~ 283 (298)
.|+++++.
T Consensus 257 ~g~~~~~~ 264 (320)
T PRK13631 257 TGTPYEIF 264 (320)
T ss_pred eCCHHHHh
Confidence 99998764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-56 Score=390.27 Aligned_cols=210 Identities=40% Similarity=0.643 Sum_probs=185.9
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..++.++|+
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEEE
Confidence 47899999995 567999999999999999999999999999999999999999999999999986543 235689999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+++ .|++||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99998887 59999998764322221 1234678899999996 57889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||+|||+.+++.+++.|++++++.|+|||++|||++++..+||++++|++|++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999987655899999999999999999999999999998654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-55 Score=436.67 Aligned_cols=225 Identities=38% Similarity=0.593 Sum_probs=200.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++|+|++++++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+|+++++...+|++|+
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 35999999999975678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+|||++.+|+.||+|||.++.. ..+++++.++++..++++ ...++.+..||||||||++||||+++
T Consensus 407 ~V~Qd~~LF~~TI~~NI~~g~~----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 407 IVSQDPLLFSGTIRENIALGRP----DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred EEcccceeecccHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999853 245677888877776542 23344567899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
+|++|+||||||+||+.++..+.+.+.++.+ ++|+|+|+|+++.+.. ||+|+||++|++++.|+++++......+.+
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~ 559 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAKGGLYAR 559 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHcCCHHHH
Confidence 9999999999999999999999999998864 6899999999999977 999999999999999999999775333444
Q ss_pred HH
Q 022337 292 RF 293 (298)
Q Consensus 292 ~~ 293 (298)
.+
T Consensus 560 l~ 561 (567)
T COG1132 560 LY 561 (567)
T ss_pred HH
Confidence 33
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=392.29 Aligned_cols=214 Identities=51% Similarity=0.779 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC-----CCCccEEEECCEeCCCCC--HHHH
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW-----EPPSGTVFLDGRDITDLD--VLSL 136 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-----~p~~G~I~i~g~~i~~~~--~~~~ 136 (298)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++...+ ...+
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 47899999995 567999999999999999999999999999999999999 999999999999986654 3456
Q ss_pred hcceEEEeCCCCCCcccHHHHhHhCccccCCCc---cHHHHHHHHHHcCCCchhhcCC--CCCCChhHHHHHHHHHHHcC
Q 022337 137 RRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL---TENEVYKLLSLADLDSSFLNKT--GGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkQRv~iAral~~ 211 (298)
+++++|+||++.+|+.|++||+.++....+... .++++.++++.+++. +..++. +.+||||||||++|||||+.
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCC-hHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 778999999998886699999988643322211 235678899999997 455666 59999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+|++|||||||+|||+.+++.+.+.|++++++ +|||++|||++.+..+||++++|++|++++.|++++
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999753 899999999999999999999999999999988764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=401.54 Aligned_cols=223 Identities=30% Similarity=0.487 Sum_probs=196.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHh
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLR 137 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~ 137 (298)
+++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.. .++
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 5 ANLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred cceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 45899999999995 56799999999999999999999999999999999999999999999999998755432 346
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCcccc-CCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLR-GKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
++++|+||++.+|+. |+.||+.++.... .... ..+++.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 779999999998875 9999998753221 1111 234577889999996 5788999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+..+||++++|++|++++.|+++++.+.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999765589999999999999999999999999999999999887653
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=394.56 Aligned_cols=218 Identities=35% Similarity=0.635 Sum_probs=192.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ig~ 142 (298)
++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.... ++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999995 5679999999999999999999999999999999999999999999999999876655443 467999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCC------------CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGK------------KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+||++.+|+. |++||+.++...... ....+++.++++.++++ +..++++.+|||||||||+|||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHHHHH
Confidence 9999998885 999999876432211 11234578899999996 578899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+.+|++|||||||++||+.+++.+++.|+++++ .|+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 999999999999999999999999999999876 48999999999999999999999999999999998887643
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=392.29 Aligned_cols=221 Identities=40% Similarity=0.617 Sum_probs=194.6
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 136 (298)
|++++|++++|++. .++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 58899999999532 1799999999999999999999999999999999999999999999999998765432 34
Q ss_pred hcceEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
++.++|+||++.+|+ .|+.||+.++....+.. ...+++.++++.++++ +..++++.+||||||||++|||||+.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 678999999999987 59999998764322221 1234678899999996 5788999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+++||||||+|||+.++..+.+.|++++++.|+|||++||+++.+..+||++++|++|++++.++++++..
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999876558999999999999999999999999999999998877643
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=407.80 Aligned_cols=220 Identities=28% Similarity=0.440 Sum_probs=194.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
+.+++++|++++|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....++++
T Consensus 2 ~~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 2 NVAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred CcEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 34799999999995 56799999999999999999999999999999999999999999999999998643 34567889
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
||+||++.+++ .|++||+.+....++... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999887 599999986432222221 134567889999996 57889999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|||+.+++.+++.|++++++ |.|||++|||++++..+||++++|++|+++..|+++++..
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999764 8999999999999999999999999999999999888743
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=442.49 Aligned_cols=215 Identities=36% Similarity=0.578 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+|+|++ ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+++...+|++|
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 35999999999953 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
|||+|++.+|++|++|||.++.. .+++++.++++.+++++. .....+..||||||||++|||||+
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~~~-----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGGAP-----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred EEEccCCccCcccHHHHHhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998732 356788899999888632 122345789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 286 (298)
++|++||||||||+||+.+++++++.|+++ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQGTYDELMARE 675 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHH-cCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999876 579999999999886 49999999999999999999987643
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=407.40 Aligned_cols=221 Identities=33% Similarity=0.541 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC--------
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD-------- 130 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~-------- 130 (298)
+|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999643 259999999999999999999999999999999999999999999999887521
Q ss_pred ----------------CCHHHHhcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcC
Q 022337 131 ----------------LDVLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNK 190 (298)
Q Consensus 131 ----------------~~~~~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~ 190 (298)
.+...+++++||+||++ .++..||+||+.|+....+... ..+++.++++.+|+..++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 12345678899999986 4666799999998764433322 245688999999996357899
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 191 ~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
++.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++++ .|.|||+||||++.+..+||||++|++
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999975 499999999999999999999999999
Q ss_pred CEEEEeeChhhhhc
Q 022337 271 GEIVEVLKPDLLSE 284 (298)
Q Consensus 271 G~i~~~g~~~~~~~ 284 (298)
|++++.|+++++..
T Consensus 241 G~i~~~g~~~~~~~ 254 (305)
T PRK13651 241 GKIIKDGDTYDILS 254 (305)
T ss_pred CEEEEECCHHHHhc
Confidence 99999999988643
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-55 Score=392.81 Aligned_cols=232 Identities=39% Similarity=0.646 Sum_probs=200.2
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|++.+.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 46899999995325799999999999999999999999999999999999999999999999998766655667789999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||++.+|+ .|++||+.++....+.. ...+++.++++.+++.. .+.++++.+||||||||++|||||+.+|++||||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999887 59999998764332222 12356788999999963 3678999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 295 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 295 (298)
|||+|||+.+++.+.+.|++++++.|+|||++||+++.+..+||++++|++|++++.++++++.+. .+++...|.+
T Consensus 161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (242)
T cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFVG 237 (242)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCChHHHHHhC
Confidence 999999999999999999999765589999999999999999999999999999999998877432 3345454443
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-55 Score=401.44 Aligned_cols=221 Identities=30% Similarity=0.528 Sum_probs=195.7
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
++++++|++++|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+...++++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 479999999999532 459999999999999999999999999999999999999999999999999976666667788
Q ss_pred eEEEeCCCC-CC-cccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPA-LF-EGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~-l~-~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||+||++. ++ ..||+||+.++....+... ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999983 44 4699999998754333221 235688899999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+++.|++++++.|+|||++|||++.+ .+|||+++|++|++++.|+++++..
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999765589999999999998 4799999999999999999887643
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-55 Score=401.55 Aligned_cols=223 Identities=34% Similarity=0.584 Sum_probs=196.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT--DLDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~--~~~~~~~~~ 138 (298)
+++++++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 358999999999954567999999999999999999999999999999999999999999999999984 223345678
Q ss_pred ceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 139 KVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 139 ~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
.+||+||++ .+++.|++||+.++....+... ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|+
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999998 3566799999988643222221 235678899999996 57899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.++..+++.|++++++.|.|||++|||++.+..+|||+++|++|++++.|+++++..
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999976558999999999999999999999999999999999887643
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=388.36 Aligned_cols=217 Identities=31% Similarity=0.492 Sum_probs=190.3
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ig~ 142 (298)
|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.... ++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 47899999995 5679999999999999999999999999999999999999999999999999876654443 567999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHc-CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLA-DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+||++.+|+. |++||+.++..........+++.++++.+ ++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999998885 99999998654322112234566778887 575 56789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||+|||+.+++.+++.|+++++ .|+|||++|||++.+..+||++++|++|++++.++++++.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999876 4899999999999999999999999999999998877653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-55 Score=398.19 Aligned_cols=232 Identities=31% Similarity=0.455 Sum_probs=200.5
Q ss_pred eEEEEeEEEEeCC--------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH
Q 022337 63 KFRVRELRKESDD--------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~--------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~ 134 (298)
+++++||++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 6899999999953 35799999999999999999999999999999999999999999999999998765443
Q ss_pred ---HHhcceEEEeCCCC--CCc-ccHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 135 ---SLRRKVGMLFQIPA--LFE-GTVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 135 ---~~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
.+++.++|+||++. +++ .|+.||+.++.... ... ...+++.++++.+++...+.++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 24678999999973 555 59999997653211 111 2345688899999995346789999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
||||+.+|++|||||||++||+.++..+.+.|+++.++.|+|||++|||++.+..+||++++|++|++++.|+++++...
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 241 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF 241 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCC
Confidence 99999999999999999999999999999999999765589999999999999999999999999999999999998766
Q ss_pred CChHHHHHh
Q 022337 286 KHPMALRFL 294 (298)
Q Consensus 286 ~~~~~~~~~ 294 (298)
.+++.+.+.
T Consensus 242 ~~~~~~~~~ 250 (265)
T TIGR02769 242 KHPAGRNLQ 250 (265)
T ss_pred CCHHHHHHH
Confidence 676666554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-55 Score=402.18 Aligned_cols=222 Identities=33% Similarity=0.549 Sum_probs=194.8
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~----~~~ 134 (298)
.++++||+++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999532 3699999999999999999999999999999999999999999999999998542 234
Q ss_pred HHhcceEEEeCCC--CCCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 135 ~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
.++++|||+||++ .+|+.|+.||+.++....+.. ...+++.++++.+|+..+..++++.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 5678899999997 467779999999875432222 123567889999999634678899999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||+|||+.++..+.++|+++.++.|.|||++|||++.+..+|||+++|++|++++.|+++++..
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999976568999999999999999999999999999999999887643
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-55 Score=409.32 Aligned_cols=233 Identities=27% Similarity=0.408 Sum_probs=199.7
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC----CCccEEEECCEeCCCCCHHH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE----PPSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~----p~~G~I~i~g~~i~~~~~~~ 135 (298)
+|+++||++.|+++ ..+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..++..+
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68999999999642 369999999999999999999999999999999999998 48999999999998776544
Q ss_pred Hh----cceEEEeCCCC--CCc-ccHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCc--hhhcCCCCCCChhHHHHH
Q 022337 136 LR----RKVGMLFQIPA--LFE-GTVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDS--SFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 136 ~~----~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkQRv 203 (298)
++ +.|+||||++. +++ .|+.+++....... +.. ...+++.++++.+||.+ ...++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 32 46999999984 566 48888776543322 111 23456889999999963 356889999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|||||+.+|++||+||||++||+.++.+++++|++++++.|.|+|+||||++.+..+||||++|++|+|++.|+++++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999998766999999999999999999999999999999999998885
Q ss_pred c-cCChHHHHHhh
Q 022337 284 E-AKHPMALRFLQ 295 (298)
Q Consensus 284 ~-~~~~~~~~~~~ 295 (298)
+ +.|++.+.++.
T Consensus 243 ~~p~hpyt~~ll~ 255 (326)
T PRK11022 243 RAPRHPYTQALLR 255 (326)
T ss_pred hCCCChHHHHHHH
Confidence 4 46777766643
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=372.23 Aligned_cols=216 Identities=37% Similarity=0.497 Sum_probs=195.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|+.+++|.+.|. .. ==.++++|++||++||+||||||||||+++|+|+..|.+|+|+|+|++....++ .+|-+++
T Consensus 1 ~l~L~~V~~~y~-~~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVSm 75 (231)
T COG3840 1 MLALDDVRFSYG-HL--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75 (231)
T ss_pred CccccceEEeeC-cc--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChhh
Confidence 467889999994 32 236899999999999999999999999999999999999999999999876554 4578999
Q ss_pred EeCCCCCCcc-cHHHHhHhCcccc--CCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLR--GKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||+.+||.. ||.+|+.+|.... -....+++++.++..+|+. .+.++.|.+|||||||||++||+|+++-+||+||
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChh-hHhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence 9999999985 9999999986421 1123467799999999997 5899999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||+|||.-+.+++.++.+++.+++.|++||||.++++.+++|+++++++|+|.+.|+..++..
T Consensus 155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999988754
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-55 Score=387.31 Aligned_cols=215 Identities=33% Similarity=0.564 Sum_probs=190.1
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|+++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 4789999999532 6799999999999999999999999999999999999999999999999998653 2456778999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+++ .|++||+.+....++... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 999999886 599999987643333221 235678899999996 5778899999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|||++||+.+++.+.+.|+++++ +.|||++|||++.+..+||++++|++|++++.|+++++
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999864 58999999999999999999999999999999887654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=387.61 Aligned_cols=208 Identities=40% Similarity=0.592 Sum_probs=182.8
Q ss_pred EEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---H-H
Q 022337 64 FRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---S-L 136 (298)
Q Consensus 64 l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~-~ 136 (298)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. . .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999642 5799999999999999999999999999999999999999999999999998765432 2 3
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
++.++|+||++.+|+. |++||+.++....+.. ..++++.++++.+|++ +..++++.+|||||||||+|||||+.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 4679999999998875 9999999865433322 1235678899999996 5678999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+. +||++++|++|++
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 160 KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999997645899999999999987 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-55 Score=386.33 Aligned_cols=212 Identities=31% Similarity=0.545 Sum_probs=187.6
Q ss_pred eEEEEeEEEEeCCCC---cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~---~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
|++++|++++|++.. ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhh
Confidence 478999999995321 69999999999999999999999999999999999999999999999999864 33456788
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++|+||++.+|+. |++||+.+....++.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~il 158 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999998885 9999998754332222 1245678899999996 5788999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||||||++||+.+++.+.+.|++++++ |+|+|++|||++.+..+||++++|++|++++.|
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999654 899999999999999999999999999997643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=415.77 Aligned_cols=214 Identities=41% Similarity=0.628 Sum_probs=188.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH----hcceEEEeCCCCCCcc-c
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL----RRKVGMLFQIPALFEG-T 153 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~----~~~ig~v~Q~~~l~~~-t 153 (298)
+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+...+ ++++||+||++.+|+. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 8999999999999999999999999999999999999999999999999977654332 3579999999999974 9
Q ss_pred HHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHH
Q 022337 154 VVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231 (298)
Q Consensus 154 v~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~ 231 (298)
++||+.++....+.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.+++
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~ 201 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 999999875433322 2235688899999997 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHH
Q 022337 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF 293 (298)
Q Consensus 232 ~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~ 293 (298)
.+.+.|.++.++.|+|||++|||++++.++||++++|++|++++.|+++++.. +.+.+...|
T Consensus 202 ~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~ 264 (400)
T PRK10070 202 EMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTF 264 (400)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHH
Confidence 99999999976568999999999999999999999999999999999988754 233444444
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=407.77 Aligned_cols=234 Identities=26% Similarity=0.430 Sum_probs=199.3
Q ss_pred CeEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC----CCccEEEECCEeCCCCCHH
Q 022337 62 PKFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE----PPSGTVFLDGRDITDLDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~----p~~G~I~i~g~~i~~~~~~ 134 (298)
++|+++||+++|.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++..++..
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999942 2469999999999999999999999999999999999997 5899999999999776654
Q ss_pred HH----hcceEEEeCCCC--CCc-ccHHHHhHhCcc---ccC---C--CccHHHHHHHHHHcCCCc--hhhcCCCCCCCh
Q 022337 135 SL----RRKVGMLFQIPA--LFE-GTVVDNIRYGPQ---LRG---K--KLTENEVYKLLSLADLDS--SFLNKTGGEISV 197 (298)
Q Consensus 135 ~~----~~~ig~v~Q~~~--l~~-~tv~eni~~~~~---~~~---~--~~~~~~~~~~l~~~~l~~--~~~~~~~~~LSg 197 (298)
++ ++.|+||||++. +.+ .||.+|+.+... ..+ . ....+++.++++.+||.+ +..++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 33 347999999986 455 499999975321 111 0 112356889999999963 346889999999
Q ss_pred hHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 198 GqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||||||+|||||+.+|++|||||||++||+.++.+++++|+++.++.|.|+|+||||++.+..+||||++|++|+|++.|
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g 241 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999998766899999999999999999999999999999999
Q ss_pred Chhhhh-ccCChHHHHHhh
Q 022337 278 KPDLLS-EAKHPMALRFLQ 295 (298)
Q Consensus 278 ~~~~~~-~~~~~~~~~~~~ 295 (298)
+++++. .+.+++.+.|+.
T Consensus 242 ~~~~i~~~p~~~y~~~ll~ 260 (330)
T PRK15093 242 PSKELVTTPHHPYTQALIR 260 (330)
T ss_pred CHHHHHhCCCCHHHHHHHH
Confidence 998875 346777766654
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=388.08 Aligned_cols=218 Identities=31% Similarity=0.567 Sum_probs=192.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ig~ 142 (298)
++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.... ++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 47899999995 5679999999999999999999999999999999999999999999999999876554433 467999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+|+. |++||+.++...++.. ...+++.++++.+++. +..++.+.+||||||||++|||||+.+|++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 9999998885 9999998764322221 1234577899999996 5788999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+||++++|++|++++.++++++..
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999998764 8999999999999999999999999999999999887643
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-55 Score=384.08 Aligned_cols=207 Identities=28% Similarity=0.569 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..+++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEe
Confidence 47899999995 56899999999999999999999999999999999999999999999999987643 3456789999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
||++.+++ .|+.||+.++...++. .++++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGI--RKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCC--cHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99998886 5999999876432222 356688899999996 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+|||+.+++.+.+.|+++++ .|+|+|++|||++.+..+||++++|++|++++.|
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 155 NGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999876 4899999999999999999999999999998654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=388.33 Aligned_cols=216 Identities=31% Similarity=0.516 Sum_probs=189.0
Q ss_pred CCeEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH--
Q 022337 61 KPKFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-- 135 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-- 135 (298)
+++++++|+++.|+++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+...
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4689999999999632 46999999999999999999999999999999999999999999999999987765432
Q ss_pred -H-hcceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 136 -L-RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 136 -~-~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+ ++.++|+||++.+|+. |++||+.++....+.. ..++++.++++.+|+. +..++++.+||||||||++|||||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~ 161 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALV 161 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 2 3679999999988875 9999998854322221 2235678899999996 5778999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
.+|++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+.. +|++++|++|++++.++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999875458999999999999876 57999999999998775
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=407.94 Aligned_cols=236 Identities=28% Similarity=0.400 Sum_probs=202.6
Q ss_pred CCCeEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCH
Q 022337 60 QKPKFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDLDV 133 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~~~ 133 (298)
.+++++++|+++.|.. ...+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..++.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 3568999999999952 236999999999999999999999999999999999999996 9999999999987765
Q ss_pred HHH---h-cceEEEeCCC--CCCc-ccHHHHhHhCccccC-CC--ccHHHHHHHHHHcCCCc--hhhcCCCCCCChhHHH
Q 022337 134 LSL---R-RKVGMLFQIP--ALFE-GTVVDNIRYGPQLRG-KK--LTENEVYKLLSLADLDS--SFLNKTGGEISVGQAQ 201 (298)
Q Consensus 134 ~~~---~-~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkQ 201 (298)
.++ | +.|+||||++ .+++ .|+.+|+......+. .. ...+++.++++.+++++ ...++++++|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 543 3 4799999998 4666 499998876543221 21 12356788999999963 2457899999999999
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
||+|||||+.+|++||+||||++||+.++..++++|++++++.|.|+|+||||++.+.++||||++|++|+|++.|++++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~ 248 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARD 248 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999987668999999999999999999999999999999999998
Q ss_pred hhc-cCChHHHHHhh
Q 022337 282 LSE-AKHPMALRFLQ 295 (298)
Q Consensus 282 ~~~-~~~~~~~~~~~ 295 (298)
+.. +.|++.+.+..
T Consensus 249 i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 249 VFYQPSHPYSIGLLN 263 (330)
T ss_pred HHhCCCCHHHHHHHH
Confidence 754 46778777654
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-55 Score=383.25 Aligned_cols=203 Identities=28% Similarity=0.492 Sum_probs=180.5
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF 144 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~ 144 (298)
+++|++++|++++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...+++++|+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 368999999532679999999999999999999999999999999999999999999999998753 34567899999
Q ss_pred CCCC--CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 145 QIPA--LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 145 Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
|++. +++.|+.||+.++....+ ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELD--AGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcC--ccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9974 456799999988643222 2245688999999997 5789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~ 274 (298)
+|||+.+++.+.+.|++++++ |.|+|++|||++.+..+||++++|++|+++
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 155 SGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999998754 899999999999999999999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-55 Score=398.78 Aligned_cols=233 Identities=34% Similarity=0.534 Sum_probs=203.2
Q ss_pred EEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-C----CccEEEECCEeCCCCCHHH
Q 022337 64 FRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-P----PSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 64 l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p----~~G~I~i~g~~i~~~~~~~ 135 (298)
++++||+.+|... ..+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|+++..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 7899999998643 369999999999999999999999999999999999998 4 5799999999998888654
Q ss_pred ---Hh-cceEEEeCCCC--CCcc-cHHHHhHhCccccCC----CccHHHHHHHHHHcCCCch--hhcCCCCCCChhHHHH
Q 022337 136 ---LR-RKVGMLFQIPA--LFEG-TVVDNIRYGPQLRGK----KLTENEVYKLLSLADLDSS--FLNKTGGEISVGQAQR 202 (298)
Q Consensus 136 ---~~-~~ig~v~Q~~~--l~~~-tv~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkQR 202 (298)
+| ++|+|+||+|. |-|. ||.+.+.-....+.. .+..+++.++|+.+|+++. ..+.||++||||||||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 33 57999999984 5553 887777655443221 1235678899999999743 6799999999999999
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|.||.||+.+|++||+||||++||...+.+++++|++++++.|.|+|+||||+..+.++||||+||..|+|+|.|+.+++
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999887
Q ss_pred h-ccCChHHHHHhhh
Q 022337 283 S-EAKHPMALRFLQL 296 (298)
Q Consensus 283 ~-~~~~~~~~~~~~~ 296 (298)
. ++.|+|++.++..
T Consensus 242 ~~~P~HPYT~~Ll~s 256 (316)
T COG0444 242 FKNPKHPYTRGLLNS 256 (316)
T ss_pred hcCCCChHHHHHHHh
Confidence 5 5688999887653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=397.45 Aligned_cols=222 Identities=32% Similarity=0.545 Sum_probs=196.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++++|
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 46899999999954457999999999999999999999999999999999999999999999999987655556778899
Q ss_pred EEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 142 MLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 142 ~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|+||++. +++.|+.||+.++....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli 160 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999984 566799999987643222221 234578899999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|||+.+++.+.+.|++++++.|.|||++||+++++.++|||+++|++|++++.|+++++..
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999999999976558999999999999999999999999999999999887743
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=418.79 Aligned_cols=223 Identities=35% Similarity=0.513 Sum_probs=200.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++.+|+++.|++++++++|+||++++|+.+||+|+||||||||+++|+|+.+|++|+|.+||.++.+.+...+|++++|
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 35556999999877799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhc----------CCCCCCChhHHHHHHHHHHHcCC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN----------KTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|+|+|.+|+.|++||+.++.. +.+++++.++++..++.+ +.+ +.+..|||||+|||++||||+++
T Consensus 400 v~Q~p~lf~gTireNi~l~~~----~~s~e~i~~al~~a~l~~-~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 400 VSQNPYLFAGTIRENILLARP----DASDEEIIAALDQAGLLE-FVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred eCCCCccccccHHHHhhccCC----cCCHHHHHHHHHHhcHHH-hhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999998742 356788899999888753 333 34567999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 292 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~ 292 (298)
++++|+|||||+||.++++.+++.|.++++ ++|+|++||++..+.+ ||+|++|++|++++.|+++++.++..-+.+.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l 551 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQGLYANL 551 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcCcHHHHH
Confidence 999999999999999999999999999976 6899999999999976 8999999999999999999997754444444
Q ss_pred H
Q 022337 293 F 293 (298)
Q Consensus 293 ~ 293 (298)
+
T Consensus 552 ~ 552 (559)
T COG4988 552 L 552 (559)
T ss_pred H
Confidence 3
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=431.45 Aligned_cols=222 Identities=30% Similarity=0.474 Sum_probs=198.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++++|++++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++.+++...+|++|+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 45999999999975567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|+||++.+|+.|++|||.++. +.+++++.++++.+|+++. ...+.+..||||||||++|||||++
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~~~~-----~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 419 MVQQDPVVLADTFLANVTLGR-----DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred EEccCCccccchHHHHHHhCC-----CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999873 2356778888888887521 2233467899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+....+.+
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~ 570 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLLAAQGRYWQ 570 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHHhCCCHHHH
Confidence 9999999999999999999999999998854 689999999999886 5999999999999999999998765444443
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-55 Score=386.09 Aligned_cols=211 Identities=38% Similarity=0.605 Sum_probs=186.8
Q ss_pred EEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 64 FRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 4789999999532 579999999999999999999999999999999999999999999999998753 35679
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+|+||++.+++ .|++||+.++...++.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999887 59999998764332221 1235678899999996 57889999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe--CCEEEEeeChh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--NGEIVEVLKPD 280 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~--~G~i~~~g~~~ 280 (298)
|||||+|||+.+++.+++.|+++.++.|+|||++|||++.+..+||++++|+ +|++++.++.+
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999866558999999999999999999999999 79999887653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-55 Score=384.59 Aligned_cols=210 Identities=34% Similarity=0.572 Sum_probs=186.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++++|+
T Consensus 1 i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFG-NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAMV 77 (213)
T ss_pred CEEEeeEEEEC-CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEEE
Confidence 47899999995 4689999999999999999999999999999999999999999999999999865432 24679999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+++ .|++||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99998886 49999998864332221 1234578889999996 57899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||+|||+.+++.+++.|++++++.|+|||++|||++++..+||++++|++|++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999997655899999999999999999999999999998764
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=379.25 Aligned_cols=231 Identities=31% Similarity=0.464 Sum_probs=202.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~i 140 (298)
+|++++||+..|+ +.++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.++|+|+...++.+. |..|
T Consensus 2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 5899999999994 6789999999999999999999999999999999999999999999999999999877654 6779
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCcc-HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKLT-ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+||||...+|+. ||+||+.++......... ....+++.+.|-.-.+..+++.++|||||||.++|||||+.+|++|+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 999999999985 999999998654322111 122666777775324678899999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHHHh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
||||.||-|.-.+++.+.|++++++.|.||++|.++...+.+++||.+||++|+|+.+|+.+++... ....+.|+
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~-~~v~~~yL 235 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD-PDVREAYL 235 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC-HHHHHHhh
Confidence 9999999999999999999999877789999999999999999999999999999999999998763 23445554
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=388.54 Aligned_cols=221 Identities=30% Similarity=0.442 Sum_probs=193.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~ 139 (298)
.++++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 3 KVMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred ccEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 35899999999995 567999999999999999999999999999999999999999999999999987665443 4678
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHc-CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLA-DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
++|+||++.+|+. |+.||+.++..........+++.++++.+ ++. +..++++.+||||||||++|||||+.+|++||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ill 160 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999998884 99999988642211111234466777777 475 46778899999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|||+.+++.+.+.|++++++ |.|||++|||++++.++|||+++|++|++++.|+++++..
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999998764 8999999999999999999999999999999999988754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=388.68 Aligned_cols=219 Identities=37% Similarity=0.589 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC--HHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD--VLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~--~~~~~~~i 140 (298)
|++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++.+
T Consensus 1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 478999999995 567999999999999999999999999999999999999999999999999986532 23456789
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|+||++.+++ .|++||+.++.. ..+.. ...+++.++++.+|++ +..++++.+||||||||++|||||+.+|+++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 158 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLM 158 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998887 599999987632 12211 1234578899999996 5778999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.++..+.+.|++++++ |+|+|++|||++.+..+||++++|++|++++.|+++++.+
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 999999999999999999999998754 8999999999999999999999999999999999888754
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=389.81 Aligned_cols=228 Identities=44% Similarity=0.658 Sum_probs=196.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----ccEEEECCEeCCCC--CHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITDL--DVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-----~G~I~i~g~~i~~~--~~~~ 135 (298)
+++++|++++|+ +..+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++... +...
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 478999999995 457999999999999999999999999999999999999998 99999999998643 2345
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral 209 (298)
.++.++|+||++.+|+.|++||+.++....+. . ...+++.++++.+++.+ +..++++.+||||||||++|||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 57789999999988889999999876433221 1 12356788999999952 357889999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CCh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHP 288 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~ 288 (298)
+.+|+++||||||+|||+.++..++++|+++++ ++|+|++|||++.+..+||++++|++|++++.|+++++... .+.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 237 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEK 237 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCh
Confidence 999999999999999999999999999999865 48999999999999999999999999999999999887543 344
Q ss_pred HHHHH
Q 022337 289 MALRF 293 (298)
Q Consensus 289 ~~~~~ 293 (298)
....|
T Consensus 238 ~~~~~ 242 (247)
T TIGR00972 238 RTEDY 242 (247)
T ss_pred HHHHH
Confidence 43333
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=385.66 Aligned_cols=215 Identities=39% Similarity=0.563 Sum_probs=184.5
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~~~ 136 (298)
+++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999543 279999999999999999999999999999999999999999999999999876553 356
Q ss_pred hcceEEEeCCC--CCCc-ccHHHHhHhCccccCCCcc---HHH-HHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 137 RRKVGMLFQIP--ALFE-GTVVDNIRYGPQLRGKKLT---ENE-VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 137 ~~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~---~~~-~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++.++|+||++ .+++ .|++||+.++....+.... .++ +.++++.+++.....++++.+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 77899999998 3554 5999999875432221111 122 247889999953467899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+.+|++|||||||++||+.+++.+.+.|++++++.|.|||++|||++.+..+||++++|++|++++.|
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999997655899999999999999999999999999998653
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=399.32 Aligned_cols=221 Identities=32% Similarity=0.575 Sum_probs=192.9
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~----~~~ 134 (298)
+++++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 58999999999632 4699999999999999999999999999999999999999999999999998542 234
Q ss_pred HHhcceEEEeCCC--CCCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 135 ~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
..++.+||+||++ .+|+.|+.||+.++....+.. ...+++.++++.+++...+.++++.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 5567899999997 466679999998764322221 123467889999999534788999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998654 8999999999999999999999999999999999887643
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-54 Score=430.39 Aligned_cols=223 Identities=32% Similarity=0.494 Sum_probs=197.2
Q ss_pred eEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.++++|++++|+++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++.+++...+++.|+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 59999999999653 57999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|+||++.+|+.|++|||.++.. ...+++++.++++.+++++. .....+.+||||||||++|||||++
T Consensus 421 ~v~Q~~~lf~~Ti~~Ni~~~~~---~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 421 LVSQNVHLFNDTIANNIAYART---EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred EEccCceeecchHHHHHhcCCC---CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998731 12356788888888886421 1233456799999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
+|++||||||||+||+.++..+++.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+....+.+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~ 574 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQNGVYAQ 574 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhCCChHHH
Confidence 9999999999999999999999999998854 799999999998875 5999999999999999999998765443433
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=394.16 Aligned_cols=223 Identities=30% Similarity=0.451 Sum_probs=197.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.
T Consensus 8 ~~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 8 SDTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred CCceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 346899999999995 5689999999999999999999999999999999999999999999999999876666667788
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccc-cC----C-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQL-RG----K-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~-~~----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
++|+||++.+++ .|+.||+.++... .. . ....+++.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999988776 4999999976321 11 1 11235678899999996 578999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|++|||||||+|||+.+++.+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|+++++..
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999999999999999999976558999999999999999999999999999999998887643
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-55 Score=384.22 Aligned_cols=208 Identities=35% Similarity=0.548 Sum_probs=184.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~~~ 139 (298)
|++++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 588999999995346799999999999999999999999999999999999999999999999998765432 35678
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++|+||++.+|+ .|+.||+.++....+.. ..++++.++++.+++. +..++.+.+||||||||++|||||+.+|++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 999999999887 59999998864322221 1245678899999996 5678899999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
||||||+|||+.++..+.+.|++++++ |+|||++|||++++..+||++++|++|+
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999998654 8999999999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=386.81 Aligned_cols=228 Identities=28% Similarity=0.453 Sum_probs=196.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++.++|
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLGV 78 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEEE
Confidence 478999999995 5679999999999999999999999999999999999999999999999999866543 33458999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+++ .|++||+.+.....+.. ...+++.++++.+|+. +..++++.+||||||||++|||||+.+|+++|||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999998865 59999998764332221 1234578899999996 5788999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc--CChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA--KHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~--~~~~~~~~~ 294 (298)
|||+|||+.+++.+.+.|++++++.|.|+|++|||++.+.. ||++++|++|++++.++++++... .....+.|.
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGALGGADLEAAFL 233 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHcCcccHHHHHH
Confidence 99999999999999999999975458999999999999975 999999999999999998877543 133445554
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=422.39 Aligned_cols=237 Identities=37% Similarity=0.565 Sum_probs=209.5
Q ss_pred CCCeEEEEeEEEEeCC------C----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC-
Q 022337 60 QKPKFRVRELRKESDD------G----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI- 128 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~------~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i- 128 (298)
..|.++++||+++|.. + ..+++||||++.+||++||||+||||||||.|+|+|+++|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 5678999999999963 1 2689999999999999999999999999999999999999999999999872
Q ss_pred -CCCCHHHHhcceEEEeCCCC--CCc-ccHHHHhHhCccccCC---CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH
Q 022337 129 -TDLDVLSLRRKVGMLFQIPA--LFE-GTVVDNIRYGPQLRGK---KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ 201 (298)
Q Consensus 129 -~~~~~~~~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ 201 (298)
........|+++-++||||. |.| .||.++|..++..+.. ...++++.+++++++++..+.+++|++|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 21223456788999999995 556 4999999987664432 2234568999999999877899999999999999
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
||+|||||+.+|++|++|||||+||+..+..+.++|+++.++.|.|.|+||||++.+..+||||+||++|+|++.|+.++
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~ 516 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEK 516 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhc-cCChHHHHHhhh
Q 022337 282 LSE-AKHPMALRFLQL 296 (298)
Q Consensus 282 ~~~-~~~~~~~~~~~~ 296 (298)
+.+ +.|+|.+.+...
T Consensus 517 v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 517 VFENPQHPYTRKLLAA 532 (539)
T ss_pred HhcCCCChHHHHHHHh
Confidence 765 478898888764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=389.99 Aligned_cols=222 Identities=27% Similarity=0.520 Sum_probs=194.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ 139 (298)
+++++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +..
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 3 QPLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred CceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 35799999999995 5689999999999999999999999999999999999999999999999999876654443 456
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccc----------cC----C-C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQL----------RG----K-K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ 201 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~----------~~----~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ 201 (298)
++|+||++.+|+. |+.||+.++... .. . . ...+++.++++.+|+. +..++++.+|||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQR 160 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHHHH
Confidence 9999999999885 999999975321 00 0 0 1124577889999996 5789999999999999
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
|++|||||+.+|++|||||||+|||+.+++.+.+.|.+++++.|+|||++||+++.+..+||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999999976558999999999999999999999999999999999887
Q ss_pred hhc
Q 022337 282 LSE 284 (298)
Q Consensus 282 ~~~ 284 (298)
+.+
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=391.57 Aligned_cols=220 Identities=34% Similarity=0.474 Sum_probs=194.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 689999999995 5679999999999999999999999999999999999999999999999999876666566778999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc------CCC
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA------NEP 213 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~------~~p 213 (298)
+||++.+++ .|++||+.++...... ....+++.++++.+++. +..++++.+|||||||||+|||||+ .+|
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p 159 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP 159 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 999998754 6999999886432221 11234578899999996 5789999999999999999999999 599
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|||||||++||+.+++.+.+.|+++.++.|.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 99999999999999999999999999974458999999999999999999999999999999998877643
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-54 Score=388.68 Aligned_cols=219 Identities=37% Similarity=0.557 Sum_probs=193.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC--------HH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD--------VL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~--------~~ 134 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 699999999995 567999999999999999999999999999999999999999999999999886431 23
Q ss_pred HHhcceEEEeCCCCCCc-ccHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 135 SLRRKVGMLFQIPALFE-GTVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
.+++.++|+||++.+++ .|+.||+.++.. ..+.. ...+++.++++.+++. ...++++.+|||||||||+|||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHh
Confidence 45678999999998887 599999987532 11211 1234577889999996 5678999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||+|||+.+++.+.+.|.++.++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998754 8999999999999999999999999999999999988754
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-54 Score=389.07 Aligned_cols=231 Identities=40% Similarity=0.617 Sum_probs=197.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~--~~~ 133 (298)
+++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.. .+.
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 45899999999995 56799999999999999999999999999999999999997 49999999998753 233
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|++||+.++....+. . ..++++.++++.+++. .+..++++.+|||||||||+|||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 4567789999999988878999999986533221 1 1235577888888873 13568889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AK 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~ 286 (298)
||+.+|++|||||||+|||+.++..+++.|++++ + +.|+|++|||++.+..+|||+++|++|++++.|+++++.. +.
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 241 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPK 241 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 9999999999999999999999999999999995 3 7899999999999999999999999999999999988753 34
Q ss_pred ChHHHHHh
Q 022337 287 HPMALRFL 294 (298)
Q Consensus 287 ~~~~~~~~ 294 (298)
+.+...|+
T Consensus 242 ~~~~~~~~ 249 (254)
T PRK14273 242 NTKTEEYI 249 (254)
T ss_pred ChHHHHhh
Confidence 55555444
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=401.18 Aligned_cols=217 Identities=33% Similarity=0.528 Sum_probs=195.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++++|++++|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .....++++||
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 489999999995 5679999999999999999999999999999999999999999999999999865 33456788999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+++. |+.||+.+....++.. ...+++.++++.+|+. +..++++.+||||||||++|||||+++|++||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999875 9999998765443322 1235688899999997 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||+|||+.+++.+++.|+++++ ++|||++||+++++.++||||++|++|+++..|+++++..
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999853 7999999999999999999999999999999999988743
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=383.10 Aligned_cols=211 Identities=32% Similarity=0.461 Sum_probs=185.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~~~ 139 (298)
|++++|+++.|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 488999999994346799999999999999999999999999999999999999999999999998765432 35678
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++|+||++.+++ .|+.||+.++....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999998765 599999998643332221 234577899999996 5678999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
||||||++||+.+++.+.+.|++++++ +.|+|++|||++++..+||++++|++|+++.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999998754 8999999999999999999999999999863
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-54 Score=439.55 Aligned_cols=215 Identities=30% Similarity=0.468 Sum_probs=193.7
Q ss_pred CeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+|+|++ ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+++..++|++|
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 35999999999974 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
|||||++.+|++|++|||.++.. ..+++++.++++.+++++. ...+.+..||||||||++|||||+
T Consensus 556 ~~v~Q~~~lf~gTi~eNi~l~~~----~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 556 AMVDQDIFLFEGTVRDNLTLWDP----TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred eEEecCChhhhccHHHHhhCCCC----CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987631 2456778888888887532 223456789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|++||||||||+||+.+++.+++.|++ .++|+|+|||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 99999999999999999999999999975 27999999999998865 999999999999999999998764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-54 Score=388.55 Aligned_cols=222 Identities=40% Similarity=0.646 Sum_probs=193.3
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CC
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~ 132 (298)
.+|+++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+
T Consensus 3 ~~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 3 SPPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred CCcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 357899999999995 5679999999999999999999999999999999999975 689999999999854 23
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+.|++||+.++....+. . ...+++.++++.+++.+ ...++++.+|||||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 161 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 34567789999999988888999999886432222 1 12356788899999842 246788999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||+.+|++|||||||+|||+.++..+.+.|+++. + ++|||++|||++.+.++||++++|++|++++.|+++++..
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 162 RALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999985 3 7899999999999999999999999999999999988754
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-54 Score=395.03 Aligned_cols=221 Identities=33% Similarity=0.529 Sum_probs=195.5
Q ss_pred CCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
+++++++||+++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 357999999999953 3569999999999999999999999999999999999999999999999999977666666788
Q ss_pred eEEEeCCCC-C-CcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPA-L-FEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~-l-~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||+||++. + +..|+.||+.++....+... ..+++.++++.+|+. ++.++++.+||||||||++|||||+.+|++
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999983 4 45699999998643332221 235688899999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|||||||+|||+.++..+++.|++++++.|.|||++|||++.+. .|||+++|++|++++.|+++++.
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999998756899999999999997 59999999999999999987754
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-54 Score=402.39 Aligned_cols=210 Identities=31% Similarity=0.537 Sum_probs=187.2
Q ss_pred EEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCC
Q 022337 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF 150 (298)
Q Consensus 71 ~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~ 150 (298)
|+|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....+++++||+||++.++
T Consensus 1 k~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 1 KVYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred CeeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 3563 5679999999999999999999999999999999999999999999999999865 3345677899999999988
Q ss_pred cc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCH
Q 022337 151 EG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227 (298)
Q Consensus 151 ~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~ 227 (298)
+. |++||+.+....++.. ...+++.++++.+++. +..++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 75 9999998764433322 1235688899999996 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 228 ~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+++.+++.|++++++ |+|||++||+++++.++||+|++|++|+++..|+++++..
T Consensus 158 ~~~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 158 RTRRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999765 8999999999999999999999999999999999887643
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-54 Score=387.38 Aligned_cols=230 Identities=37% Similarity=0.574 Sum_probs=198.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE---PPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~---p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
+++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+...+++.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 589999999995 5679999999999999999999999999999999999984 799999999999977665667788
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCC----CccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGK----KLTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
++|+||++.+|+.|++||+.++....+. ...++++.++++.+++.+ +..++++.+||||||||++|||||+.+
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999999988999999876433221 112345778999999952 346788999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMAL 291 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~ 291 (298)
|+++||||||+|||+.++..+.+.|+++.+ ++|+|++||+++.+..+||++++|++|++++.|+++++... .++...
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 238 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTK 238 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCCcHHHH
Confidence 999999999999999999999999999853 89999999999999999999999999999999999887542 334445
Q ss_pred HHhh
Q 022337 292 RFLQ 295 (298)
Q Consensus 292 ~~~~ 295 (298)
.|.+
T Consensus 239 ~~~~ 242 (246)
T PRK14269 239 AYLS 242 (246)
T ss_pred HHhh
Confidence 4443
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=413.41 Aligned_cols=216 Identities=34% Similarity=0.555 Sum_probs=199.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..|+++||+++|++++++|+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|++||+++++.+.+.+|+.||
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 349999999999766679999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|||||..||+.||..||.+|.. ....+++.++++++++++. ...+++..|||||||||+||||+++
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~----sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNP----SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred EeCCcccccchhHHHHhhcCCC----CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 9999999999999999999842 4567899999999999642 2445677899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+|+|+++|||||+||.++++++++.+.+... |+|+|+|-||++.+.+ ||+|+++++|++.+.|+.+++..+
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~--~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~~ 575 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMDVMS--GRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLAP 575 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHHhcC--CCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhhh
Confidence 9999999999999999999999999998543 8999999999999975 899999999999999999998773
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-54 Score=387.37 Aligned_cols=230 Identities=43% Similarity=0.658 Sum_probs=197.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCCCHHHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~~~~~~ 136 (298)
++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+...+
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 2 NKIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred ceEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4699999999995 46799999999999999999999999999999999999984 79999999999876666667
Q ss_pred hcceEEEeCCCCCCc-ccHHHHhHhCccccCC----CccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 137 RRKVGMLFQIPALFE-GTVVDNIRYGPQLRGK----KLTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
++.+||+||++.+++ .|+.||+.++...... ....+++.++++.+++.+ +..++++.+|||||||||+||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 788999999998765 5999999876432211 112356788999999852 34688899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~ 287 (298)
|+.+|++|||||||+|||+.++..+.+.|+++. + +.|+|++|||++.+..+||++++|++|++++.|+++++... .+
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 238 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRH 238 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCCcc
Confidence 999999999999999999999999999999985 3 79999999999999999999999999999999999887543 33
Q ss_pred hHHHHHh
Q 022337 288 PMALRFL 294 (298)
Q Consensus 288 ~~~~~~~ 294 (298)
...+.|.
T Consensus 239 ~~~~~~~ 245 (250)
T PRK14247 239 ELTEKYV 245 (250)
T ss_pred HHHHHHh
Confidence 4444443
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=381.41 Aligned_cols=208 Identities=34% Similarity=0.542 Sum_probs=183.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhcce
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LSLRRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~~~~~~i 140 (298)
++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 4789999999544579999999999999999999999999999999999999999999999999876543 2356789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+|+||++.+|+. |++||+.++....+.. ...+++.++++.++++ +..++++.+||||||||++|||||+.+|+++|
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999998884 9999998864332221 1234678899999996 57889999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
|||||++||+.+++.+.+.|+++.++ |.|+|++|||++.+..+||++++|++|++
T Consensus 160 lDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999998654 89999999999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=426.06 Aligned_cols=218 Identities=29% Similarity=0.561 Sum_probs=198.3
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
+.++++|++|+|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|++||.++.+++...+|++|
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 469999999999653 4799999999999999999999999999999999999999999999999999999998999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcC----------CCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK----------TGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkQRv~iAral~ 210 (298)
+||||++.+|+.|++||+.++.. ..+++++.++++.+++++ +.++ .+..||||||||++||||++
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~~~~~----~~~~~~i~~al~~~~l~~-~i~~p~GldT~vge~g~~LSgGqrqRialARall 491 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLLLAAP----NASDEALIEVLQQVGLEK-LLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL 491 (574)
T ss_pred eEEcccchhhcccHHHHhhcCCC----ccCHHHHHHHHHHcCCHH-HHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998742 245678899999999863 4433 56789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCC
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH 287 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~ 287 (298)
++|++||||||||+||+.+++.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+...
T Consensus 492 ~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~g 565 (574)
T PRK11160 492 HDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQQG 565 (574)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhcCc
Confidence 99999999999999999999999999999853 8999999999999864 99999999999999999999876433
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-54 Score=388.62 Aligned_cols=232 Identities=40% Similarity=0.641 Sum_probs=197.8
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCCC--
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDLD-- 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~~-- 132 (298)
..++++++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++...+
T Consensus 9 ~~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 9 AQPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred cceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 456899999999995 56799999999999999999999999999999999999985 8999999999885432
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
...+++.++|+||++.+|+.|++||+.++....+... ..+++.++++.+++. .+..++++.+|||||||||+|||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHH
Confidence 2345678999999998888899999998643322221 124577889999884 23568889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-C
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-K 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~ 286 (298)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++|||++++.++|||+++|++|++++.|+++++.+. .
T Consensus 168 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 245 (258)
T PRK14268 168 TLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPR 245 (258)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 99999999999999999999999999999999853 79999999999999999999999999999999999887543 3
Q ss_pred ChHHHHHh
Q 022337 287 HPMALRFL 294 (298)
Q Consensus 287 ~~~~~~~~ 294 (298)
+.+.+.|.
T Consensus 246 ~~~~~~~~ 253 (258)
T PRK14268 246 EKSTEDYI 253 (258)
T ss_pred CHHHHHHh
Confidence 44444443
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-54 Score=393.14 Aligned_cols=219 Identities=30% Similarity=0.498 Sum_probs=191.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT--DLDVLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~--~~~~~~~~~~i 140 (298)
||+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+++.+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 589999999995 567999999999999999999999999999999999999999999999999984 22334567789
Q ss_pred EEEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|+||++. ++..++.+|+.++....+... ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999986 344589999987543222221 234577899999996 5788999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.++..+.+.|++++++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999998754 8999999999999999999999999999999999877643
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=380.67 Aligned_cols=208 Identities=30% Similarity=0.542 Sum_probs=185.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|+++.|+ ++++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++.++|+
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEe
Confidence 47899999995 457999999999999 99999999999999999999999999999999999887654 5567889999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+. |+.||+.+.....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 156 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999998875 9999998754332221 1235678899999996 56789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||+|||+.+++.+.+.|+++++ +.|||++|||++.+..+|||+++|++|++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 157 PTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999865 589999999999999999999999999998654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-54 Score=389.15 Aligned_cols=209 Identities=32% Similarity=0.505 Sum_probs=188.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+++.+
T Consensus 10 ~~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 10 GTPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CCcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 46799999999995 568999999999999999999999999999999999999999999999998753 346789
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|+||++.+|+ .|++||+.++.. ...++++.++++.+++. +..++++.+||||||||++|||||+.+|++||||
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD 158 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK----GQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc----chHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999888 599999988632 11245688899999996 5788999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~ 280 (298)
|||+|||+.+++.+.+.|+++.++.|+|||++|||++.+..+||++++|++|++++.++.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999986655899999999999999999999999999999887654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-54 Score=391.24 Aligned_cols=233 Identities=25% Similarity=0.397 Sum_probs=197.2
Q ss_pred CCeEEEEeEEEEeCC--------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q 022337 61 KPKFRVRELRKESDD--------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~--------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~ 132 (298)
+++|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 458999999999952 246999999999999999999999999999999999999999999999999986544
Q ss_pred HHHHhcceEEEeCCCC--CCcc-cHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPA--LFEG-TVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~--l~~~-tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
....++.++|+||++. +++. |+.+|+.+..... ... ...+++.++++.+++.....++++.+|||||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 4444567999999985 4554 9999998753321 111 12356788999999953567888999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA- 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~- 285 (298)
|||+.+|++|||||||++||+.+++.+.+.|.+++++.|.|||++||+++.+..+||++++|++|++++.|+++++...
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 241 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCC
Confidence 9999999999999999999999999999999999765589999999999999999999999999999999998887543
Q ss_pred CChHHHHH
Q 022337 286 KHPMALRF 293 (298)
Q Consensus 286 ~~~~~~~~ 293 (298)
.+.....+
T Consensus 242 ~~~~~~~~ 249 (267)
T PRK15112 242 LHELTKRL 249 (267)
T ss_pred CCHHHHHH
Confidence 33444433
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-54 Score=381.01 Aligned_cols=210 Identities=33% Similarity=0.573 Sum_probs=183.1
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---H
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS---L 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 136 (298)
+++++|+++.|+++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... +
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 37899999999532 46999999999999999999999999999999999999999999999999987655432 2
Q ss_pred h-cceEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 R-RKVGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 ~-~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+ +.++|+||++.+++ .|++||+.++....... ...+++.++++.++++ +..++++.+|||||||||+|||||+.+
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 3 67999999998887 59999998754322211 1234678899999996 578899999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~ 274 (298)
|++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+.. ||++++|++|+++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999976558999999999999865 8999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=393.90 Aligned_cols=228 Identities=36% Similarity=0.604 Sum_probs=196.6
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH----hcce
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL----RRKV 140 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~----~~~i 140 (298)
.++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5678999994 5689999999999999999999999999999999999999999999999999876543322 3579
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+|+||++.+|+ .|+.||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999886 59999998864322221 1235678899999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||||+|||+.+++.+.+.|.+++++.|+|||++|||++.+..+||++++|++|++++.|+++++.+. .+.+.+.|.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 261 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFF 261 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence 99999999999999999999999765589999999999999999999999999999999999887543 334444444
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-54 Score=390.94 Aligned_cols=222 Identities=32% Similarity=0.449 Sum_probs=197.0
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 5 ~~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 45799999999995 56799999999999999999999999999999999999999999999999998766666667789
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCcccc-----CC-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLR-----GK-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+|+||++.+++ .|++||+.++.... .. ....+++.++++.+++. +..++++.+||||||||++|||||+.+|
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p 162 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQET 162 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHHHHHHHhcCC
Confidence 99999998876 59999998753111 01 11234678899999996 5789999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|||||||+|||+.+++.+.+.|.+++++.|.|||++|||++.+.++||++++|++|++++.|+++++..
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 163 AIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999976558999999999999999999999999999999999887643
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-54 Score=383.34 Aligned_cols=217 Identities=32% Similarity=0.514 Sum_probs=190.5
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-HhcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~ig~ 142 (298)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 47899999995 568999999999999999999999999999999999999999999999999987665443 3567999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcC-CCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLAD-LDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+||++.+|+. |+.||+.++....+.. ..+...++++.++ +. +..++++.+||||||||++|||||+.+|+++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRR-SRKIPDEIYELFPVLK-EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcc-hHHHHHHHHHHHHhHH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9999998885 9999998764322211 2234567777776 44 46789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||+|||+.+++.+.+.|.+++++.|+|+|++||+++.+..+||+++++++|++++.|+++++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999987655899999999999999999999999999999999988773
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=436.95 Aligned_cols=217 Identities=32% Similarity=0.533 Sum_probs=195.2
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++||+|+|++++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++.+++..++|++||
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 35999999999975668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
||+|++.+|++|++|||.++.. ...+++++.++++.+++++. .....+..||||||||++|||||++
T Consensus 552 ~v~Q~~~lf~gTI~eNi~l~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 552 YLPQEPYIFSGSILENLLLGAK---ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred EEecCceehhHHHHHHHhccCC---CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999998732 12356778888888877421 2334567899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+|++||||||||+||+.+++.+++.|+++ + |+|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~--~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNL-Q--DKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHh-c--CCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999875 2 789999999999885 6999999999999999999998764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-54 Score=392.41 Aligned_cols=219 Identities=35% Similarity=0.543 Sum_probs=192.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHHHhcceE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-VLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~-~~~~~~~ig 141 (298)
|++++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++...+ ...+++.+|
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 5889999999954567999999999999999999999999999999999999999999999999986654 345677899
Q ss_pred EEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 142 MLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 142 ~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|+||++. ++..|+.||+.++....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999985 445799999988653322221 235578889999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|||+.++..+++.|++++++ |.|||++|||++.+. .|||+++|++|++++.|+++++..
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999998754 899999999999985 699999999999999999887643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-54 Score=384.76 Aligned_cols=227 Identities=34% Similarity=0.490 Sum_probs=194.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC------CCHHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD------LDVLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~------~~~~~~ 136 (298)
+++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....+
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 589999999995 5689999999999999999999999999999999999999999999999998731 122345
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCc-cccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
++.++|+||++.+|+. |+.||+.+.. ...+.. ...+++.++++.+|++ ...++++.+||||||||++|||||+.+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~ 159 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 6789999999998874 9999997532 122211 1234578889999996 578999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 292 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~ 292 (298)
|+++||||||+|||+.+++.+.+.|+++.+ .|+|+|++|||++.+..+||++++|++|++++.|+++++..+.+.....
T Consensus 160 p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~ 238 (242)
T PRK11124 160 PQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQPQTEAFKN 238 (242)
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCcccHHHHH
Confidence 999999999999999999999999999865 4899999999999999999999999999999999988875443333333
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=377.06 Aligned_cols=221 Identities=29% Similarity=0.516 Sum_probs=202.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~i 140 (298)
+++.++|+.|+|+ +++|++++||++++||++|++|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |..|
T Consensus 3 ~~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4689999999994 6789999999999999999999999999999999999999999999999999999887544 4569
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCC----ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKK----LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
||+||++.+|.. ||+|||...++.+..+ ..+++++++++.+++. ++.+++..+||||||+|+.|||||+.+|+.
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 999999999975 9999999877655432 1234577999999996 799999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+||||||||.||.+..++.++++.++.+ |..|+++.|+..+...+|||.+++.+|++.++|+|+++.++
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999764 99999999999999999999999999999999999998764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-54 Score=387.19 Aligned_cols=229 Identities=36% Similarity=0.560 Sum_probs=197.2
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-----------
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----------- 132 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~----------- 132 (298)
++++||+++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999995 568999999999999999999999999999999999999999999999999886432
Q ss_pred --HHHHhcceEEEeCCCCCCc-ccHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 133 --VLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 --~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+ .|+.||+.++.. ..+.. ...+++.++++.++++ +..++.+.+||||||||++||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la 158 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIA 158 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHH
Confidence 1345778999999999887 599999987532 11111 1234678899999996 578899999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA- 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~- 285 (298)
|||+.+|++|||||||+|||+.++..+.+.|+++.++.|.|+|++|||++.+..+|||+++|++|++++.|+++++...
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T TIGR03005 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQP 238 (252)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999999999999999999999999998765589999999999999999999999999999999998887532
Q ss_pred CChHHHHHh
Q 022337 286 KHPMALRFL 294 (298)
Q Consensus 286 ~~~~~~~~~ 294 (298)
.++....|.
T Consensus 239 ~~~~~~~~~ 247 (252)
T TIGR03005 239 KEERTREFL 247 (252)
T ss_pred CcHHHHHHH
Confidence 344544443
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-54 Score=393.92 Aligned_cols=221 Identities=38% Similarity=0.590 Sum_probs=192.3
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~----~~~ 134 (298)
.++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 38999999999642 3699999999999999999999999999999999999999999999999998643 234
Q ss_pred HHhcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 135 ~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
.+++.++|+||++ .+++.|++||+.++....+... ..+++.++++.+++.....++++.+||||||||++|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 5677899999997 4667799999987643222211 23456788999999634678899999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||++||+.+++.+.+.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999764 8999999999999999999999999999999999877643
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-54 Score=384.93 Aligned_cols=220 Identities=25% Similarity=0.504 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~i 140 (298)
.+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.+
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 2 ATLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred ceEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3799999999995 568999999999999999999999999999999999999999999999999987655433 46789
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccC-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|+||++.+++ .|+.||+.+...... .. ..+.++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFI 159 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999887 499999987643221 11 1234578899999996 5778899999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||++||+.+++.+.+.+.++++ .|+|+|++||+++.+..+||++++|++|++++.++++++.+
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999865 48999999999999999999999999999999999888754
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=389.61 Aligned_cols=232 Identities=38% Similarity=0.628 Sum_probs=198.1
Q ss_pred CCCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC--C
Q 022337 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--L 131 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~--~ 131 (298)
..+++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.. .
T Consensus 15 ~~~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 15 ATEIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCCceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 4567899999999995 56799999999999999999999999999999999999975 89999999999864 2
Q ss_pred CHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC--C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHH
Q 022337 132 DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 132 ~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~ 204 (298)
+...+++.++|+||++.+|+.|+.||+.++...++. . ...+++.++++.+++.+ ...++++.+||||||||++
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 173 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC 173 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 334567789999999998878999999976432221 1 12345788999999953 2457889999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFT 251 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999854 6899999999999999999999999999999999888753
Q ss_pred -cCChHHHHH
Q 022337 285 -AKHPMALRF 293 (298)
Q Consensus 285 -~~~~~~~~~ 293 (298)
+.+.....|
T Consensus 252 ~~~~~~~~~~ 261 (267)
T PRK14235 252 NPDDPRTQDY 261 (267)
T ss_pred CCCCHHHHHH
Confidence 234444433
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=386.65 Aligned_cols=230 Identities=40% Similarity=0.615 Sum_probs=196.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCC--CCCHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDIT--DLDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~--~~~~~ 134 (298)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++. ..+..
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4799999999995 56799999999999999999999999999999999999987 4999999999986 33444
Q ss_pred HHhcceEEEeCCCCCCcc-cHHHHhHhCccccCC--C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
.++++++|+||++.+|+. |+.||+.++....+. . ...+++.++++.+++.. ...++++.+||||||||++||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 567789999999998875 999999876432221 1 12345778899998742 346788999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA- 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~- 285 (298)
|||+.+|++|||||||+|||+.+++.+.+.|+++.+ ++|||++|||++.+..+||++++|++|++++.|+++++.+.
T Consensus 162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 239 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENP 239 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999864 68999999999999999999999999999999999887543
Q ss_pred CChHHHHHh
Q 022337 286 KHPMALRFL 294 (298)
Q Consensus 286 ~~~~~~~~~ 294 (298)
.+++...|.
T Consensus 240 ~~~~~~~~~ 248 (253)
T PRK14267 240 EHELTEKYV 248 (253)
T ss_pred CcHHHHHHh
Confidence 334544443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=387.76 Aligned_cols=219 Identities=33% Similarity=0.512 Sum_probs=194.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 689999999995 5679999999999999999999999999999999999999999999999998876665566778999
Q ss_pred EeCCCCCCcc-cHHHHhHhCcc----ccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQ----LRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~----~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||++.+++. |+.||+.++.. ..+. ....+++.++++.+++. ++.++++.+||||||||++|||||+.+|++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 159 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPV 159 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999988865 99999998632 1111 11234678899999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+.+.|+++.++ |+|+|++|||++.+.++||++++|++|+++..|+++++..
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 160 VLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999998654 8999999999999999999999999999999998887643
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=384.33 Aligned_cols=219 Identities=27% Similarity=0.448 Sum_probs=193.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~i 140 (298)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... .++.+
T Consensus 1 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3689999999995 467999999999999999999999999999999999999999999999999887655443 34579
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcccc--------CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+|+||++.+|+. |++||+.++.... +. ...++++.++++.+++. +..++++.+|||||||||+|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999985 9999998753211 01 11235678899999996 577899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+.+|++|||||||+|||+.+++.+++.|+++.+ ++|||++||+++.+.++||++++|++|++++.++++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999864 6899999999999999999999999999999999888754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=386.78 Aligned_cols=222 Identities=36% Similarity=0.535 Sum_probs=193.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC---------
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL--------- 131 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~--------- 131 (298)
+++++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 45799999999995 56799999999999999999999999999999999999999999999999987531
Q ss_pred ----CHHHHhcceEEEeCCCCCCcc-cHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH
Q 022337 132 ----DVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 132 ----~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv 203 (298)
....+++.++|+||++.+++. |++||+.++.. ..... ...+++.++++.+|+.....++++.+||||||||+
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv 161 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV 161 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 123456789999999999874 99999987531 11211 12456788999999964334788999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+|||+++|++|++++.|+++++.
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 9999999999999999999999999999999999999754 899999999999999999999999999999999988875
Q ss_pred c
Q 022337 284 E 284 (298)
Q Consensus 284 ~ 284 (298)
.
T Consensus 241 ~ 241 (257)
T PRK10619 241 G 241 (257)
T ss_pred h
Confidence 3
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=391.83 Aligned_cols=220 Identities=36% Similarity=0.629 Sum_probs=193.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~--~~~~~~~~~i 140 (298)
+++++|++++|++++.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+++.|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 58899999999644579999999999999999999999999999999999999999999999999842 2233567889
Q ss_pred EEEeCCCC--CCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPA--LFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~--l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|+||++. +++.|+.||+.++....+.. ...+++.++++.+++. ++.++++.+|||||+||++|||||+.+|++|
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999973 56679999998764222221 1235678899999996 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.++..+++.|.++.++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999764 8999999999999999999999999999999999887643
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-54 Score=378.78 Aligned_cols=206 Identities=42% Similarity=0.684 Sum_probs=181.3
Q ss_pred EEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 65 RVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 65 ~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
+++|++++|+++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999532 5799999999999999999999999999999999999999999999999998766555667889999
Q ss_pred eCCCC--CCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 144 FQIPA--LFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 144 ~Q~~~--l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||++. +++.|+.||+.++....+.. ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 159 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99984 44569999998754322211 1234678899999996 5788999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
|||+|||+.+++.+.+.|.+++++ |.|||++|||++++..+||++++|++|+
T Consensus 160 EPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 160 EPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999765 8999999999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=380.87 Aligned_cols=213 Identities=36% Similarity=0.547 Sum_probs=186.0
Q ss_pred CeEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---
Q 022337 62 PKFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS--- 135 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~--- 135 (298)
++++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 579999999999642 25999999999999999999999999999999999999999999999999987665432
Q ss_pred H-hcceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 136 L-RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 136 ~-~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
. +++++|+||++.+++. |+.||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 2 3579999999998875 9999998754322211 2245688899999996 57789999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
+|++|||||||+|||+.+++.+.+.|++++++.|.|||++|||++.+. .||++++|++|++++.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQEE 227 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEec
Confidence 999999999999999999999999999997655899999999999885 5999999999999753
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-54 Score=378.92 Aligned_cols=207 Identities=30% Similarity=0.559 Sum_probs=183.9
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|+++.|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEe
Confidence 47899999995 5679999999999999999999999999999999999999999999999987642 356789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+++. |++||+.+....++.. ...+++.++++.++++ +..++++.+||||||||++|||||+.+|+++||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE 154 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999998875 9999998754332221 2245678899999996 57888999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+||++++|++|++++.|
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999998764 899999999999999999999999999998653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-54 Score=382.20 Aligned_cols=217 Identities=32% Similarity=0.473 Sum_probs=189.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 5 ~~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 45899999999995 56799999999999999999999999999999999999999999999999998776666677889
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+|+||++.+|+.|++||+.+...........+++.++++.+++.+...++++.+|||||+||++|||||+.+|+++||||
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999888899999987543322222345677899999995346789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe-CCEEEEeeCh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEIVEVLKP 279 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~-~G~i~~~g~~ 279 (298)
||+|||+.+++.+.+.|.++.++.|.|||++|||++.+. .||++++|+ ++..+++|+.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 164 ITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhhh
Confidence 999999999999999999987655899999999999986 699999995 5555555543
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=393.88 Aligned_cols=222 Identities=30% Similarity=0.505 Sum_probs=192.1
Q ss_pred CeEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC----C-C
Q 022337 62 PKFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----L-D 132 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~----~-~ 132 (298)
..++++|++++|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 469999999999543 249999999999999999999999999999999999999999999999998742 1 2
Q ss_pred HHHHhcceEEEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
...+++.++|++|++. +++.|++||+.++....+... ..+++.++++.+++...+.++++.+||||||||++||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 3456778999999973 556799999998643222211 124567889999995357889999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|+.+|++|||||||+|||+.+++.+++.|+++.++.|+|||++|||++.+.++||++++|++|++++.|+++++.
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999987655899999999999999999999999999999999887753
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=390.62 Aligned_cols=222 Identities=31% Similarity=0.536 Sum_probs=194.2
Q ss_pred CCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
.++++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 468999999999952 4579999999999999999999999999999999999999999999999999876555567888
Q ss_pred eEEEeCCCC-CC-cccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPA-LF-EGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~-l~-~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++|+||++. .| ..|++||+.++....+... ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|++
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999984 44 4699999988643222211 234578899999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+++.|++++++.++|||++||+++.+. .||++++|++|++++.|+++++..
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999987654589999999999985 799999999999999998877643
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=387.52 Aligned_cols=232 Identities=37% Similarity=0.613 Sum_probs=197.5
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CC
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~ 132 (298)
..++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 10 ~~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 456899999999995 5679999999999999999999999999999999999987 699999999998753 34
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC-ccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK-LTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
...+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++. .+..++++.+||||||||++||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lara 168 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART 168 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHH
Confidence 456677899999999988889999999875433221 1234567788888763 235688899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC-----------CEEEEee
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-----------GEIVEVL 277 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~-----------G~i~~~g 277 (298)
|+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++.+..+||++++|++ |++++.|
T Consensus 169 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~ 246 (269)
T PRK14259 169 IAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFN 246 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeC
Confidence 9999999999999999999999999999999853 68999999999999999999999996 6789999
Q ss_pred Chhhhhc-cCChHHHHHh
Q 022337 278 KPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 278 ~~~~~~~-~~~~~~~~~~ 294 (298)
+++++.. +.+++...|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~ 264 (269)
T PRK14259 247 ETKKIFNSPKQKATQDYI 264 (269)
T ss_pred CHHHHHhCcCChHHHHHH
Confidence 9988754 3445544443
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-53 Score=433.00 Aligned_cols=216 Identities=38% Similarity=0.565 Sum_probs=195.1
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+|+|+++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+++...+|+.+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 459999999999643 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||+|++.+|++|++|||.++.. ..+++++.++++.+++.+. ...+.+..||||||||++|||||+
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAP----YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCC----CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998732 2456788888888887531 223456789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|+++|||||||+||+.+++.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999864 799999999999885 699999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=391.44 Aligned_cols=221 Identities=32% Similarity=0.514 Sum_probs=194.6
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc---cEEEECCEeCCCCCHHHH
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS---GTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~---G~I~i~g~~i~~~~~~~~ 136 (298)
+.+++++|+++.|++. +++|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++...+...+
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 4589999999999632 469999999999999999999999999999999999999998 899999999876655566
Q ss_pred hcceEEEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 RRKVGMLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 ~~~ig~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
++++||+||++. +++.|+.||+.++....+... ..+++.++++.+++. ++.++++.+|||||+||++|||||+.+
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 788999999984 345699999988643332221 234578899999996 578999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|++|||||||+|||+.+++.+.+.|++++++.|+|||++||+++.+. +|||+++|++|++++.|+++++.
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999997655899999999999985 79999999999999999988764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=405.70 Aligned_cols=225 Identities=33% Similarity=0.534 Sum_probs=193.3
Q ss_pred eEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE----eCCCCCHHH---Hh-cc
Q 022337 68 ELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR----DITDLDVLS---LR-RK 139 (298)
Q Consensus 68 ~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~----~i~~~~~~~---~~-~~ 139 (298)
++.++| +...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++...+... .| ++
T Consensus 29 ~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 344566 3567999999999999999999999999999999999999999999999997 454444332 23 57
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++|+||++.+|+ .|++||+.++....+.. ...+++.++++.+|+. ++.++++.+|||||||||+|||||+.+|++|
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999998 59999999875443322 1235678899999997 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~ 294 (298)
||||||++||+.++..+.+.|.++.++.++|||+||||++++.++||||++|++|++++.|+++++.. +.+.+...|.
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 265 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV 265 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHHHh
Confidence 99999999999999999999999977668999999999999999999999999999999999998854 2344555553
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-53 Score=433.62 Aligned_cols=215 Identities=33% Similarity=0.550 Sum_probs=190.8
Q ss_pred CeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++||+|+|++ ++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+++...+|++
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 45999999999964 3479999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
|+||+|+|.+|+.|++|||.++.. ..+++++.++++.+++++. ..++.+.+||||||||++||||+
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLT----DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999998742 2346778888888887521 22334568999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+++|+|||||||||+||+.+++.+.+ .. . ..++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE-SR-S--RASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH-hh-c--cCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHHHhC
Confidence 99999999999999999999999998 22 2 23799999999999885 5999999999999999999998764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-54 Score=445.01 Aligned_cols=219 Identities=39% Similarity=0.634 Sum_probs=198.6
Q ss_pred CCeEEEEeEEEEeCCCC--cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 61 KPKFRVRELRKESDDGA--PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~--~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
...++++||+|+|+.+. ++|+|+||+|++|+++||||||||||||++++|.|+|+|++|+|++||.|++.++.+++|+
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 44699999999998654 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHH
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+||.|+|+|.||..|++|||.||.. +.+++++.++++..+..+ .+..+.+.+||||||||||||||
T Consensus 428 ~iglV~QePvlF~~tI~eNI~~G~~----dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFATTIRENIRYGKP----DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred hcCeeeechhhhcccHHHHHhcCCC----cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999853 345677777777766532 23445667899999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 286 (298)
|+++|+|||||||||+||+.+++.+.+.|.+.++ |+|.|+|+|+++.+.+ ||+|++|++|+|+|.|+++|+....
T Consensus 504 lv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred HHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhcc
Confidence 9999999999999999999999999999999865 8999999999999976 9999999999999999999987643
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=391.25 Aligned_cols=221 Identities=30% Similarity=0.528 Sum_probs=194.6
Q ss_pred CeEEEEeEEEEeCC-----CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHH
Q 022337 62 PKFRVRELRKESDD-----GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-VLS 135 (298)
Q Consensus 62 ~~l~~~~l~~~y~~-----~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~-~~~ 135 (298)
++++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 58999999999963 246999999999999999999999999999999999999999999999999986533 245
Q ss_pred HhcceEEEeCCCC--CCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 136 LRRKVGMLFQIPA--LFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 136 ~~~~ig~v~Q~~~--l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+++.+||+||++. ++..|+.+|+.|+....+.. ..++++.++++.+|+. ++.++++.+||||||||++|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 6788999999984 55569999999875433322 1235678899999996 57899999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++.+.. ||++++|++|++++.|+++++..
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999976558999999999999976 99999999999999999888643
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=374.88 Aligned_cols=208 Identities=36% Similarity=0.520 Sum_probs=183.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++. .|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .++.++|+
T Consensus 1 i~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYG-EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSML 75 (211)
T ss_pred CEEEeEEEEeC-CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEE
Confidence 47899999995 433 39999999999999999999999999999999999999999999999876543 35789999
Q ss_pred eCCCCCCcc-cHHHHhHhCcccc-CC-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLR-GK-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+. |++||+.++.... .. ...++++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999998875 9999998764321 11 12345688899999996 57889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||++||+.++..+++.|++++++.|.|||++|||++.+..+|||+++|++|++++.|
T Consensus 155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999997655899999999999999999999999999998653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-53 Score=422.45 Aligned_cols=217 Identities=33% Similarity=0.542 Sum_probs=193.5
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++|+|++++++|+|+||++++||.++|+|+||||||||+|+|+|+++|++|+|++||.++.+++...+|++|+
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 35999999999975467999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|+||++.+|++|++||+.++.. ..+++++.++++.+++++ ......+..||||||||++|||||++
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~~~----~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~ 488 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVGRP----DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK 488 (588)
T ss_pred EEecCcccccccHHHHHhcCCC----CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998731 234566777777777642 12334456799999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+|+++|||||||+||+.+++.+++.|.++.+ ++|+|+||||++.+. .||+|++|++|++++.|+++++...
T Consensus 489 ~~~iliLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHHC
Confidence 9999999999999999999999999998753 799999999999875 6999999999999999999888654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-54 Score=410.41 Aligned_cols=223 Identities=33% Similarity=0.547 Sum_probs=202.4
Q ss_pred eEEEEeEEEEeCCCC-cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~-~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.++++||+|+|+++. ++|+|+||++++||.+||+|+||||||||+.+|.|.++|++|+|.++|.++..++.+.+|+.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 699999999998665 6999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+++|.+++|..|+++|+.++. .+.+++++.++++.+|+++. ..+..+..||||||||++|||+|++
T Consensus 416 vl~Qr~hlF~~Tlr~NL~lA~----~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~ 491 (573)
T COG4987 416 VLTQRVHLFSGTLRDNLRLAN----PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491 (573)
T ss_pred hhccchHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc
Confidence 999999999999999999874 24578889999999998632 3445578999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
|.+++||||||.|||+.+++++++.|.+-.+ |+|+|||||++..++ .||||+||++|+++++|++.++..+ +..++
T Consensus 492 dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le-~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~ 567 (573)
T COG4987 492 DAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGTHAELLAN-NGRYK 567 (573)
T ss_pred CCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHh-hcCEEEEEECCeeeecCCHHhhhcc-ccHHH
Confidence 9999999999999999999999999998765 899999999999996 5899999999999999999999874 44444
Q ss_pred HH
Q 022337 292 RF 293 (298)
Q Consensus 292 ~~ 293 (298)
++
T Consensus 568 ~l 569 (573)
T COG4987 568 RL 569 (573)
T ss_pred HH
Confidence 43
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-53 Score=384.45 Aligned_cols=233 Identities=28% Similarity=0.411 Sum_probs=196.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe-----CCCCCHHH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD-----ITDLDVLS 135 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~-----i~~~~~~~ 135 (298)
.++++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++ +...+...
T Consensus 4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 4 QPLLSVRGLTKLYG-PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred CceEEEeeeEEEcC-CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 35799999999995 4679999999999999999999999999999999999999999999999998 76554433
Q ss_pred ----HhcceEEEeCCCC--CCc-ccHHHHhHhCccccCC---CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 136 ----LRRKVGMLFQIPA--LFE-GTVVDNIRYGPQLRGK---KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 136 ----~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
.++.++|+||++. +++ .|+.+|+.+....... ....+++.++++.+++.....++.+.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 2457999999984 444 4899998764321111 11234577899999996336789999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE- 284 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~- 284 (298)
||||+.+|++|||||||++||+.+++.+.+.|+++.++.|.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 242 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD 242 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999876558999999999999999999999999999999999988753
Q ss_pred cCChHHHHHh
Q 022337 285 AKHPMALRFL 294 (298)
Q Consensus 285 ~~~~~~~~~~ 294 (298)
+.+.+.+.|+
T Consensus 243 ~~~~~~~~~~ 252 (258)
T PRK11701 243 PQHPYTQLLV 252 (258)
T ss_pred CCCHHHHHHH
Confidence 2334444443
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=385.14 Aligned_cols=221 Identities=41% Similarity=0.621 Sum_probs=193.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 133 (298)
.++++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+.
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999995 5579999999999999999999999999999999999986 589999999999853 334
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCcccc-CCCc--cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR-GKKL--TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~-~~~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..++++++|+||++.+|+.|++||+.++.... +... ..+++.++++.+++.. +..++++.+||||||||++|||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 45678899999999988889999998764322 1111 2356788999999741 3568889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++. + +.|||++||+++.+..+||++++|++|++++.|+++++..
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999985 3 7899999999999999999999999999999999988754
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-54 Score=379.23 Aligned_cols=203 Identities=34% Similarity=0.572 Sum_probs=177.8
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF 144 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~ 144 (298)
+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .++++++|+|
T Consensus 1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 3689999995 467999999999999999999999999999999999999999999999998763 3567899999
Q ss_pred CCCCC---CcccHHHHhHhCccccC----C--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 145 QIPAL---FEGTVVDNIRYGPQLRG----K--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 145 Q~~~l---~~~tv~eni~~~~~~~~----~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
|++.+ ++.|++||+.++..... . ....+++.++++.++++ +..++++.+||||||||++|||||+.+|++
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99876 34699999998643211 1 11235678899999996 578899999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
|||||||+|||+.+++.+.+.|+++++ .|.|+|++|||++++.++||++++|++| +++.
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999976 4899999999999999999999999886 5443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=378.71 Aligned_cols=225 Identities=34% Similarity=0.488 Sum_probs=194.2
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ +.. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|
T Consensus 1 ~l~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 1 MLKLTDITWLYH-HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred CeEEEEEEEEEC-Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 588999999995 333 49999999999999999999999999999999999999999999998865433 2567999
Q ss_pred EeCCCCCCcc-cHHHHhHhCcccc-C-CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLR-G-KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+|+. |+.||+.++.... . ....++++.++++.++++ +..++++.+||||||||++||||++.+|+++|||
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999998885 9999998763211 1 112345688899999996 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
|||+|||+.+++.+.+.|.++.++.|+|+|++|||++++..+||++++|++|++++.|+++++.... ...+.|.
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~-~~~~~~~ 228 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK-ASASALL 228 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh-hHHHHhh
Confidence 9999999999999999999987655899999999999999999999999999999999988876532 3444443
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=384.45 Aligned_cols=231 Identities=35% Similarity=0.611 Sum_probs=196.5
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC--C---CccEEEECCEeCCC--CC
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--P---PSGTVFLDGRDITD--LD 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~--p---~~G~I~i~g~~i~~--~~ 132 (298)
.+++++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+
T Consensus 9 ~~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 9 KQEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred CCceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 356899999999995 5679999999999999999999999999999999999997 3 69999999999853 23
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+.|++||+.++....+. . ...+++.++++.+++.+ +..++++.+||||||||++||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 34567789999999998888999999876433321 1 11345677889988842 346788999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA- 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~- 285 (298)
|||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|++|||++.+.++|||+++|++|++++.|+++++...
T Consensus 168 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 245 (259)
T PRK14274 168 RALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNP 245 (259)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence 999999999999999999999999999999999853 68999999999999999999999999999999999987542
Q ss_pred CChHHHHH
Q 022337 286 KHPMALRF 293 (298)
Q Consensus 286 ~~~~~~~~ 293 (298)
.+.....|
T Consensus 246 ~~~~~~~~ 253 (259)
T PRK14274 246 DDQRTLDY 253 (259)
T ss_pred CCHHHHHh
Confidence 33444444
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=385.29 Aligned_cols=210 Identities=31% Similarity=0.526 Sum_probs=186.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +..++|
T Consensus 1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 589999999995 56799999999999999999999999999999999999999999999999987542 245899
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+++ .|+.||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999887 59999998764322222 1235688899999996 5778999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe--CCEEEEeeCh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--NGEIVEVLKP 279 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~--~G~i~~~g~~ 279 (298)
|||+|||+.+++.+.+.|++++++.|+|||++|||++.+..+||++++|+ +|++++.++.
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999865458999999999999999999999998 5999988754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-53 Score=385.24 Aligned_cols=219 Identities=29% Similarity=0.439 Sum_probs=193.1
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCC-----CH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDL-----DV 133 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~-----~~ 133 (298)
++|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++... ..
T Consensus 3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999995 568999999999999999999999999999999999999986 49999999988542 22
Q ss_pred HHHhcceEEEeCCCCCCc-ccHHHHhHhCcccc--------CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHH
Q 022337 134 LSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR 202 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQR 202 (298)
..+++.++|+||++.+|+ .|+.||+.++.... .. ...++++.++++.+++. +..++.+.+||||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr 160 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSGGQQQR 160 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCHHHHHH
Confidence 345678999999999887 49999998763210 00 11234678899999996 57899999999999999
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|+|||||+.+|++|||||||+|||+.+++.+.+.|++++++.|.|||++|||++.+..+||++++|++|++++.|+++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999999999999999765589999999999999999999999999999999999886
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-53 Score=381.63 Aligned_cols=230 Identities=37% Similarity=0.585 Sum_probs=195.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC---CCC--CccEEEECCEeCCCCC--HH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL---WEP--PSGTVFLDGRDITDLD--VL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl---~~p--~~G~I~i~g~~i~~~~--~~ 134 (298)
++++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++| ++|+|.++|+++...+ ..
T Consensus 2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999995 56799999999999999999999999999999999997 455 5899999999986432 34
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.+++.++|+||++.+|+.|+.||+.++....+.. ..++++.++++.+++.+ +..++++.+||||||||++||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 5677899999999988789999998764322211 12345778899999852 35678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~ 287 (298)
|+.+|++|||||||+|||+.+++.+.+.|+++. + ++|||++|||++.+..+|||+++|++|++++.|+++++.+. .+
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~~~ 238 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEK 238 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCCCC
Confidence 999999999999999999999999999999984 3 78999999999999999999999999999999999988543 33
Q ss_pred hHHHHHh
Q 022337 288 PMALRFL 294 (298)
Q Consensus 288 ~~~~~~~ 294 (298)
.....|+
T Consensus 239 ~~~~~~~ 245 (250)
T PRK14245 239 EATQNYI 245 (250)
T ss_pred hHHHHhh
Confidence 3444444
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-53 Score=386.99 Aligned_cols=222 Identities=30% Similarity=0.457 Sum_probs=195.3
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
.++++++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 4589999999999643 359999999999999999999999999999999999999999999999999876666677888
Q ss_pred eEEEeCCCC-CCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPA-LFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~-l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++|+||++. +++ .|+.+|+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSV 163 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999984 454 59999998874332221 1234677899999996 578899999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+.+.|++++++.|+|||++||+++.+.. |||+++|++|++++.|+++++..
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999876558999999999999975 99999999999999999887644
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=376.04 Aligned_cols=207 Identities=43% Similarity=0.665 Sum_probs=182.5
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhcceE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSLRRKVG 141 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~--~~~~~~~~~ig 141 (298)
++++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+++.++
T Consensus 1 l~~~~l~~~~~-~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFG-DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEEC-CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 47899999995 4679999999999999999999999999999999999999999999999998853 23345678899
Q ss_pred EEeCCCCCCc-ccHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|+||++.+++ .|+.||+.++.. .++.. ...+++.++++.++++ +..++++.+||||||||++|||||+.+|++||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 158 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVML 158 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999887 599999987632 12221 1234678899999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
|||||+|||+.+++.+.+.|++++++ |+|||++|||++.+.++||++++|++|++
T Consensus 159 lDEP~~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 159 FDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999764 89999999999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=439.08 Aligned_cols=281 Identities=31% Similarity=0.507 Sum_probs=233.9
Q ss_pred ccchhHHHHHHHHHHhHHHHHHHHHcccccchh--HHHHHHhhhccCCCCCccc-cc--cCCCCCeEEEEeEEEEeCCC-
Q 022337 3 LTFSPQFIVCGCINLLSVSQIEVIQKMPSTCSL--FRDEVREHLLTVPGEAEAE-DD--NQIQKPKFRVRELRKESDDG- 76 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~l~~~~l~~~y~~~- 76 (298)
|++.-.|-++.++..+.+...+..+..|..... ....++..++..+...... .. .+.-...++++||+|.|+.+
T Consensus 922 ~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP 1001 (1228)
T KOG0055|consen 922 MTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP 1001 (1228)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC
Confidence 344455667777777888888888887777633 3344666555544221111 11 12223459999999999744
Q ss_pred -CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 77 -APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 77 -~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
.+||+|+||+|++|+.+||||||||||||.+.+|-++|+|++|.|.|||+|++++++..+|+++|.|.|+|.||..|++
T Consensus 1002 ~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIr 1081 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIR 1081 (1228)
T ss_pred CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHH
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L 225 (298)
|||.||.. ..+++++.++++..+.++ .....++.+||||||||+|||||+++||+||||||.||+|
T Consensus 1082 ENI~YG~~----~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSAL 1157 (1228)
T KOG0055|consen 1082 ENIAYGSE----EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 (1228)
T ss_pred HHHhccCC----CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhh
Confidence 99999921 246778888888887642 2355678899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 226 D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
|.++++.+.+.|.+.+. |+|.|+|+|+++.+.+ ||.|+|+++|+|+|.|+++++..+...|.
T Consensus 1158 DseSErvVQeALd~a~~--gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~ 1219 (1228)
T KOG0055|consen 1158 DSESERVVQEALDRAME--GRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKRGIYF 1219 (1228)
T ss_pred hhhhHHHHHHHHHHhhc--CCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCCCchH
Confidence 99999999999999864 8999999999999965 99999999999999999999987544443
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-53 Score=384.46 Aligned_cols=230 Identities=35% Similarity=0.589 Sum_probs=195.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 133 (298)
+++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++... +.
T Consensus 19 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 19 EHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 45899999999995 5679999999999999999999999999999999999865 7999999999998542 23
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|++||+.++....+.. ..++.+.++++.+++.. +..++++.+||||||||++|||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar 177 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR 177 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence 34577899999999988889999998764322211 12345677888888742 3567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-C
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-K 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~ 286 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++.+..+|||+++|++|++++.|+++++... .
T Consensus 178 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 255 (268)
T PRK14248 178 TLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPK 255 (268)
T ss_pred HHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999999854 68999999999999999999999999999999999887543 3
Q ss_pred ChHHHHH
Q 022337 287 HPMALRF 293 (298)
Q Consensus 287 ~~~~~~~ 293 (298)
+.....|
T Consensus 256 ~~~~~~~ 262 (268)
T PRK14248 256 QQKTEDY 262 (268)
T ss_pred ChHHHHH
Confidence 3433333
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=401.51 Aligned_cols=213 Identities=31% Similarity=0.527 Sum_probs=190.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHHHHhc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~----~~~~~~~ 138 (298)
||++ ||+++|+ ++ .+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +....++
T Consensus 1 ~l~~-~l~k~~~-~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQLG-DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEeC-CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 5788 9999995 43 33 99999999999999999999999999999999999999999999987542 1234567
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+++|+||++.+|+. |++||+.++.. ....+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llL 151 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMA----KSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLL 151 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhh----hhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 89999999999984 99999998743 12346788999999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||++||+.+++.+++.|+++.++.|.|+|+||||++++..+||++++|++|++++.|+++++..
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999999999977668999999999999999999999999999999999988754
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=383.91 Aligned_cols=218 Identities=32% Similarity=0.446 Sum_probs=193.5
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999995 56899999999999999999999999999999999999999999999999998776666667789999
Q ss_pred eCCCCCCc-ccHHHHhHhCcc-c---cCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 144 FQIPALFE-GTVVDNIRYGPQ-L---RGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~-~---~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|++.++. .|+.||+.++.. . ... ....+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLL 159 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99987654 699999987531 1 111 11234678899999996 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.++..+.+.|++++++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 160 LLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999998754 8999999999999999999999999999999999887643
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-53 Score=380.29 Aligned_cols=231 Identities=36% Similarity=0.609 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~~~ 134 (298)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+..
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4799999999995 5689999999999999999999999999999999999997 489999999998753 2234
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc---cHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.+++.++|++|++.+|+.|++||+.++....+... .++++.++++.+++. ....++++.+||||||||++||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 55778999999999888899999987643222111 234577888999984 134678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~ 287 (298)
|+.+|+++||||||++||+.+++.+.+.|+++.+ +.|||++|||++.+.++||++++|++|++++.++++++.. +.+
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 239 (251)
T PRK14251 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKK 239 (251)
T ss_pred HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCCCC
Confidence 9999999999999999999999999999999853 6899999999999999999999999999999999988753 344
Q ss_pred hHHHHHhh
Q 022337 288 PMALRFLQ 295 (298)
Q Consensus 288 ~~~~~~~~ 295 (298)
.+...|.+
T Consensus 240 ~~~~~~~~ 247 (251)
T PRK14251 240 QITSDYLN 247 (251)
T ss_pred HHHHHHHh
Confidence 45555543
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=380.97 Aligned_cols=218 Identities=28% Similarity=0.437 Sum_probs=188.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHH-hcce
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLDGRDITDLDVLSL-RRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~g~~i~~~~~~~~-~~~i 140 (298)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++...+.... +..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 47899999995 567999999999999999999999999999999999995 7999999999999876655443 3459
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccC-------CC--ccHHHHHHHHHHcCCCchhhcCCCC-CCChhHHHHHHHHHHH
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRG-------KK--LTENEVYKLLSLADLDSSFLNKTGG-EISVGQAQRVALARTL 209 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~-------~~--~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkQRv~iAral 209 (298)
+|+||++.+++. |+.||+.+...... .. ...+++.++++.+++.....++++. +||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 999999998875 99999987532111 01 1134578899999996445677776 5999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEEEeeChhhhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+.+|++|||||||++||+.+++.+.+.|+++++ .|.|||++|||++.+..+ ||++++|++|++++.|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 999999999999999999999999999999975 489999999999999988 8999999999999999887654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-53 Score=380.48 Aligned_cols=230 Identities=40% Similarity=0.622 Sum_probs=196.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 133 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 2 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 46899999999995 56799999999999999999999999999999999999985 799999999998542 23
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
...++.++|+||++.+|+.|++||+.++....+. . ...+++.++++.+++.+ +..++++.+||||||||++|||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 3457789999999998888999999976433222 1 12345678899998741 3567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AK 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~ 286 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|+|++||+++.+..+|||+++|++|++++.|+++++.. +.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14270 161 TIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQ 238 (251)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCCC
Confidence 99999999999999999999999999999999865 5899999999999999999999999999999999988754 33
Q ss_pred ChHHHHH
Q 022337 287 HPMALRF 293 (298)
Q Consensus 287 ~~~~~~~ 293 (298)
++....|
T Consensus 239 ~~~~~~~ 245 (251)
T PRK14270 239 KKETEDY 245 (251)
T ss_pred ChHHHHh
Confidence 4444444
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-53 Score=386.37 Aligned_cols=221 Identities=34% Similarity=0.513 Sum_probs=193.9
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
++++++|++++|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 379999999999632 359999999999999999999999999999999999999999999999999876555567788
Q ss_pred eEEEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||+||++. ++..|+.||+.++....+... ..+++.++++.+++. .+.++++.+||||||||++|||||+.+|++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999984 445699999987643222211 134578899999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||++||+.+++.+++.|.+++++.|.|||++|||++.+. .||++++|++|++++.|+++++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999997655899999999999996 699999999999999999887643
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-53 Score=384.84 Aligned_cols=233 Identities=30% Similarity=0.419 Sum_probs=199.6
Q ss_pred CeEEEEeEEEEeCC--------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH
Q 022337 62 PKFRVRELRKESDD--------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~ 133 (298)
++|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 47999999999963 4679999999999999999999999999999999999999999999999998876543
Q ss_pred ---HHHhcceEEEeCCCC--CCc-ccHHHHhHhCccc-cCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHH
Q 022337 134 ---LSLRRKVGMLFQIPA--LFE-GTVVDNIRYGPQL-RGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 134 ---~~~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~~-~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~ 204 (298)
..+++.++|+||++. +++ .|+.+|+.+.... .... ....++.++++.+++.....++++.+||||||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 235678999999983 455 5999998764321 1111 123467889999999634678999999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+.+|++|||||||++||+.+++.+.+.|++++++.|.|+|++||+++.+..+||++++|++|++++.|+++++..
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 99999999999999999999999999999999999976558999999999999999999999999999999999988765
Q ss_pred cCChHHHHHh
Q 022337 285 AKHPMALRFL 294 (298)
Q Consensus 285 ~~~~~~~~~~ 294 (298)
..+++...+.
T Consensus 242 ~~~~~~~~~~ 251 (268)
T PRK10419 242 FSSPAGRVLQ 251 (268)
T ss_pred CCCHHHHHHH
Confidence 5556655554
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=378.88 Aligned_cols=221 Identities=38% Similarity=0.619 Sum_probs=190.9
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CC---CccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EP---PSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p---~~G~I~i~g~~i~~~--~~ 133 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++... +.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 3 EPILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred CceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 35799999999995 567999999999999999999999999999999999995 46 599999999998532 22
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++.. +..++.+.+|||||||||+|||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR 161 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHH
Confidence 34567899999999988889999998764322221 12345677888888742 3567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ ++|||++|||++.+..+|||+++|++|++++.|+++++.+
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999854 6899999999999999999999999999999999988754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=418.14 Aligned_cols=218 Identities=33% Similarity=0.529 Sum_probs=194.3
Q ss_pred CeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+++|++ ++++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|++||.++.+++..++++++
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence 35999999999964 35799999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchh----------hcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|+||+|.+|++|++|||.++.. ...+++++.++++.+++++.+ ....+..||||||||++||||++
T Consensus 409 ~~v~Q~~~lf~~Ti~~Ni~~~~~---~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall 485 (571)
T TIGR02203 409 ALVSQDVVLFNDTIANNIAYGRT---EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL 485 (571)
T ss_pred eEEccCcccccccHHHHHhcCCC---CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998731 124567788888888875311 22335679999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|+++|||||||+||+.+++.+++.|.++.+ ++|+|+|||+.+.+ ..||+|++|++|++++.|+++++.+.
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 99999999999999999999999999998854 79999999999877 56999999999999999999998654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=400.39 Aligned_cols=213 Identities=31% Similarity=0.508 Sum_probs=188.0
Q ss_pred eEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHHHhcceEEE
Q 022337 68 ELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----VLSLRRKVGML 143 (298)
Q Consensus 68 ~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~----~~~~~~~ig~v 143 (298)
|++++|+ ++. + |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ....++.++|+
T Consensus 4 ~l~~~~~-~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLG-DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEEC-CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 8999995 444 5 999999999999999999999999999999999999999999999985432 12456789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
||++.+|+. ||+||+.++..........+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999985 99999998754222112234688999999996 5789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||+.+++.+++.|++++++.|+|+|++|||++++..+||++++|++|++++.|+++++..
T Consensus 160 s~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 160 AALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 99999999999999999976668999999999999999999999999999999999888754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=378.27 Aligned_cols=228 Identities=45% Similarity=0.641 Sum_probs=194.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~--~~~~~ 135 (298)
+++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+...
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 589999999995 46799999999999999999999999999999999999863 79999999999864 23345
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++.+ +..++++.+||||||||++|||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 677899999999888889999999864333221 12355777888888742 356788999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CCh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHP 288 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~ 288 (298)
+.+|++|||||||++||+.+++.+.+.|+++. + +.|||++|||++.+..+||++++|++|++++.++++++... .+.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 239 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDK 239 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCCh
Confidence 99999999999999999999999999999985 3 78999999999999999999999999999999998887532 344
Q ss_pred HHHHH
Q 022337 289 MALRF 293 (298)
Q Consensus 289 ~~~~~ 293 (298)
....|
T Consensus 240 ~~~~~ 244 (250)
T PRK14240 240 RTEDY 244 (250)
T ss_pred HHHHh
Confidence 43333
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=379.61 Aligned_cols=233 Identities=26% Similarity=0.396 Sum_probs=195.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe-----CCCCCHHH-
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD-----ITDLDVLS- 135 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~-----i~~~~~~~- 135 (298)
++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+..+
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4799999999995 4579999999999999999999999999999999999999999999999987 65544332
Q ss_pred ---HhcceEEEeCCCC--CCc-ccHHHHhHhCcc-ccC--CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 136 ---LRRKVGMLFQIPA--LFE-GTVVDNIRYGPQ-LRG--KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 136 ---~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~-~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
+++.++|++|++. ++. .|+.+|+.+... ... .....+++.++++.+++.....++.+.+|||||||||+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 2357999999985 333 488999865321 110 1122456788999999963467899999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-c
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-A 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~ 285 (298)
|||+.+|++|||||||++||+.+++.+++.|.++.++.|.|+|+|||+++.+..+||++++|++|++++.++++++.. +
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~~ 240 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDP 240 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcCC
Confidence 999999999999999999999999999999999876558999999999999999999999999999999999888754 2
Q ss_pred CChHHHHHhh
Q 022337 286 KHPMALRFLQ 295 (298)
Q Consensus 286 ~~~~~~~~~~ 295 (298)
.+.+.+.|+.
T Consensus 241 ~~~~~~~~l~ 250 (253)
T TIGR02323 241 QHPYTQLLVS 250 (253)
T ss_pred CCHHHHHHHH
Confidence 3455555543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=378.19 Aligned_cols=230 Identities=37% Similarity=0.611 Sum_probs=194.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC--C---CccEEEECCEeCCCC--CHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--P---PSGTVFLDGRDITDL--DVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~--p---~~G~I~i~g~~i~~~--~~~ 134 (298)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... ...
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 3589999999995 5679999999999999999999999999999999999986 4 699999999998542 233
Q ss_pred HHhcceEEEeCCCCCCc-ccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.+++.++|+||++.+|+ .|+.||+.++....+. . ..++++.++++.+++.. +..++.+.+||||||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 56778999999999888 5999999876432221 1 12345778899999852 2457789999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-C
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-K 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~ 286 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++||+++.+..+|||+++|++|++++.|+++++... .
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 239 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999999964 58999999999999999999999999999999999887542 3
Q ss_pred ChHHHHHh
Q 022337 287 HPMALRFL 294 (298)
Q Consensus 287 ~~~~~~~~ 294 (298)
+.....|.
T Consensus 240 ~~~~~~~~ 247 (252)
T PRK14256 240 KKQTEDYI 247 (252)
T ss_pred cHHHHHHH
Confidence 44444443
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-53 Score=424.98 Aligned_cols=235 Identities=31% Similarity=0.449 Sum_probs=203.1
Q ss_pred CCeEEEEeEEEEeCC----------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC
Q 022337 61 KPKFRVRELRKESDD----------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~----------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~ 130 (298)
.++++++||++.|+. ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 468999999999952 1469999999999999999999999999999999999999999999999999876
Q ss_pred CCHH---HHhcceEEEeCCC--CCCc-ccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH
Q 022337 131 LDVL---SLRRKVGMLFQIP--ALFE-GTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ 201 (298)
Q Consensus 131 ~~~~---~~~~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ 201 (298)
.+.. .++++|+|+||++ .+++ .||.+|+.++...++. . ...+++.++++.+|++....++++++|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 5432 3467899999998 4776 4999999876432221 1 123568899999999634679999999999999
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||+||||++.+..+||||++|++|++++.|++++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999977668999999999999999999999999999999999988
Q ss_pred hhc-cCChHHHHHhh
Q 022337 282 LSE-AKHPMALRFLQ 295 (298)
Q Consensus 282 ~~~-~~~~~~~~~~~ 295 (298)
+.. +.+++...+..
T Consensus 551 i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 551 VFENPQHPYTRKLMA 565 (623)
T ss_pred HhcCCCCHHHHHHHh
Confidence 753 45667665543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=392.22 Aligned_cols=232 Identities=38% Similarity=0.605 Sum_probs=197.3
Q ss_pred CCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CC
Q 022337 61 KPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~ 132 (298)
..+++++|++++|.+ .+++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++.. .+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 458999999999963 3479999999999999999999999999999999999996 579999999999863 23
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCcc---HHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLT---ENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~---~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+.|++||+.|+....+.... ++.+.++++.+++.+ +..++++.+||||||||++||
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 34668889999999999989999999987533222111 123567788888732 346788999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-c
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-A 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~ 285 (298)
|||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.++||||++|++|++++.|+++++.. +
T Consensus 238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999999864 6899999999999999999999999999999999999754 3
Q ss_pred CChHHHHHh
Q 022337 286 KHPMALRFL 294 (298)
Q Consensus 286 ~~~~~~~~~ 294 (298)
.+.....|.
T Consensus 316 ~~~~~~~~~ 324 (329)
T PRK14257 316 KNKRTKDYI 324 (329)
T ss_pred CcHHHHHHh
Confidence 444444443
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=376.88 Aligned_cols=220 Identities=43% Similarity=0.673 Sum_probs=191.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----ccEEEECCEeCCCC--CHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITDL--DVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-----~G~I~i~g~~i~~~--~~~ 134 (298)
++++++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... +..
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5799999999995 567999999999999999999999999999999999999997 69999999988542 234
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc---cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.+++.++|+||++.+|+.|++||+.++...++... .++.+.++++.+++.+ ++.++++.+|||||||||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 56788999999999888899999998654322211 1244667788888742 35688999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|+.+|++|||||||+|||+.++..+.++|+++. + ++|||++||+++.+..+||++++|++|++++.|+++++..
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 162 LAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999984 3 7999999999999999999999999999999999988754
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=384.18 Aligned_cols=220 Identities=27% Similarity=0.404 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC--------ccEEEECCEeCCCCCHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP--------SGTVFLDGRDITDLDVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~--------~G~I~i~g~~i~~~~~~ 134 (298)
||+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++...+..
T Consensus 1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 589999999995 568999999999999999999999999999999999999998 99999999998766666
Q ss_pred HHhcceEEEeCCCCC-CcccHHHHhHhCcccc----CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPAL-FEGTVVDNIRYGPQLR----GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l-~~~tv~eni~~~~~~~----~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.+++.++|+||++.+ ++.|++||+.++.... +. ....+.+.++++.+++. ++.++++.+|||||||||+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHH
Confidence 667789999999864 5579999998863211 11 11234578899999996 5788999999999999999999
Q ss_pred HHc---------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 208 TLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 208 al~---------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
||+ .+|++|||||||++||+.+++.+.+.|+++.++.|+|||+||||++.+.++||++++|++|++++.|+
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecC
Confidence 999 59999999999999999999999999999876558999999999999999999999999999999999
Q ss_pred hhhhhc
Q 022337 279 PDLLSE 284 (298)
Q Consensus 279 ~~~~~~ 284 (298)
++++..
T Consensus 239 ~~~~~~ 244 (272)
T PRK13547 239 PADVLT 244 (272)
T ss_pred HHHHcC
Confidence 887744
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=379.84 Aligned_cols=219 Identities=41% Similarity=0.630 Sum_probs=190.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~--~~~~~ 135 (298)
+++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.. .+...
T Consensus 4 ~l~i~~v~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYG-SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEEC-CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 699999999995 46799999999999999999999999999999999999974 79999999998843 23345
Q ss_pred HhcceEEEeCCCCCCc-ccHHHHhHhCccccCC---CccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGK---KLTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++.++|+||++.+|+ .|++||+.++....+. ...++++.++++.+++. .+..++++.+|||||||||+||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 6788999999999887 4999999876432221 11234577889999884 135678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe------CCEEEEeeChhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV------NGEIVEVLKPDLL 282 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~------~G~i~~~g~~~~~ 282 (298)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++.+.++|||+++|+ +|++++.|+++++
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 9999999999999999999999999999999853 6899999999999999999999997 7999999999887
Q ss_pred hc
Q 022337 283 SE 284 (298)
Q Consensus 283 ~~ 284 (298)
..
T Consensus 241 ~~ 242 (258)
T PRK14241 241 FS 242 (258)
T ss_pred Hh
Confidence 54
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=377.09 Aligned_cols=229 Identities=43% Similarity=0.656 Sum_probs=195.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL--DVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~--~~~ 134 (298)
++++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 2 PIIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred ceEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4799999999995 56799999999999999999999999999999999999984 899999999988542 223
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++.+ ...++++.+||||||||++||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 4567899999999988889999998764322211 12345677889888852 24688899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~ 287 (298)
|+.+|++|||||||+|||+.++..+.+.|.++.+ ++|+|++||+++.+..+||++++|++|+++..|+++++.+. .+
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 238 (250)
T PRK14262 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKN 238 (250)
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCCCC
Confidence 9999999999999999999999999999999864 68999999999999999999999999999999999887543 23
Q ss_pred hHHHHH
Q 022337 288 PMALRF 293 (298)
Q Consensus 288 ~~~~~~ 293 (298)
.+.+.|
T Consensus 239 ~~~~~~ 244 (250)
T PRK14262 239 KLTEEY 244 (250)
T ss_pred hHHHHH
Confidence 344444
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=377.54 Aligned_cols=232 Identities=38% Similarity=0.615 Sum_probs=197.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 133 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++... +.
T Consensus 4 ~~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 4 EIILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred cceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 45899999999995 56799999999999999999999999999999999999763 489999999998654 33
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
...++.++|+||++.+|+.|++||+.++...++.. ..++.+.++++.+++.+ +..++.+.+||||||||++|||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 45577899999999988889999999875433221 12345677888888742 2467889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AK 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~ 286 (298)
||+.+|+++||||||+|||+.+++.+.+.|+++++ ++|||++||+++.+..+||++++|++|++++.|+++++.. +.
T Consensus 163 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 240 (253)
T PRK14261 163 TLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCCC
Confidence 99999999999999999999999999999999864 5899999999999999999999999999999999988754 23
Q ss_pred ChHHHHHhh
Q 022337 287 HPMALRFLQ 295 (298)
Q Consensus 287 ~~~~~~~~~ 295 (298)
+++.+.|.+
T Consensus 241 ~~~~~~~~~ 249 (253)
T PRK14261 241 EELTENYIT 249 (253)
T ss_pred cHHHHHHhc
Confidence 456666553
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=374.75 Aligned_cols=214 Identities=33% Similarity=0.535 Sum_probs=184.1
Q ss_pred EEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999953 3579999999999999999999999999999999999999999999999999876666667788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHH---------HHHHHc--CCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVY---------KLLSLA--DLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+||++.+|+.|+.||+.++... . ...++. +.++.+ +++ ...++++.+|||||||||+|||||+.
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~--~--~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPG--M--SMERVIEAAKLAGAHDFISELPEGYD-TIVGEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred EcCCchhccchHHHHhhccCCC--C--CHHHHHHHHHHcCcHHHHHhCccccc-chhhcCCCcCCHHHHHHHHHHHHHhh
Confidence 9999988888999999875421 1 112222 233333 443 34577899999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+|++|||||||++||+.+++.+.+.|++++ + |+|||++|||++.+. .||++++|++|++++.|+++++...
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999999999985 3 899999999999995 6999999999999999998887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=375.95 Aligned_cols=220 Identities=42% Similarity=0.643 Sum_probs=191.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCC-CCCHHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDIT-DLDVLS 135 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~-~~~~~~ 135 (298)
++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++. ..+...
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 2 NKFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred CeEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 3689999999995 56799999999999999999999999999999999999986 5999999999885 234455
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+++.++|+||++.+|+.|+.||+.++....+.. ..++++.++++.+++.+ +..++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 677899999999988889999998764322211 11345677888888742 356788999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++.+..+|||+++|++|++++.|+++++..
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999999864 5899999999999999999999999999999999888753
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=369.70 Aligned_cols=209 Identities=33% Similarity=0.505 Sum_probs=184.4
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ + +++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ .+++.++|+
T Consensus 1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 46899999995 2 578999999999999999999999999999999999999999999999986543 356789999
Q ss_pred eCCCCCCc-ccHHHHhHhCcccc-C-CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLR-G-KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+ .|+.||+.++.... . ....++++.++++.+++. +..++.+.+||||||||++|||||+.+|+++||||
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999887 49999998753211 1 112245678899999996 57899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
||++||+.+++.+.+.|.++.++.|.|||++||+++++..+||++++|++|++++.|+
T Consensus 155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999876558999999999999999999999999999998764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-52 Score=424.18 Aligned_cols=224 Identities=32% Similarity=0.493 Sum_probs=197.6
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+|+|+++ +++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.++.+++..++|+.+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 469999999999643 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||+|++.+|+.|++||+.++.. ..+++++.++++.+++++ ...++.+..||||||||++|||||+
T Consensus 534 ~~v~q~~~lf~~ti~eNi~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 534 GVVLQENVLFSRSIRDNIALCNP----GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV 609 (694)
T ss_pred eEEccCCeehhhhHHHHHhcCCC----CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998631 234667777777777642 2234456789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
++|++|||||||++||+.+++.+++.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+....+.
T Consensus 610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 610 GNPRILIFDEATSALDYESEALIMRNMREICR--GRTVIIIAHRLSTVR-ACDRIIVLEKGQIAESGRHEELLALQGLYA 686 (694)
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC--CCEEEEEeCChHHHH-hCCEEEEEeCCEEEEeCCHHHHHHcCChHH
Confidence 99999999999999999999999999999853 799999999999986 499999999999999999999876544444
Q ss_pred HH
Q 022337 291 LR 292 (298)
Q Consensus 291 ~~ 292 (298)
+.
T Consensus 687 ~l 688 (694)
T TIGR01846 687 RL 688 (694)
T ss_pred HH
Confidence 43
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-52 Score=378.85 Aligned_cols=222 Identities=35% Similarity=0.584 Sum_probs=193.4
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CC
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~ 132 (298)
..++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+
T Consensus 17 ~~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 17 EEIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CCeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 345899999999995 5689999999999999999999999999999999999997 589999999999853 23
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+.|++||+.++....+. . ..++++.++++.+++.+ +..++++.+||||||||++||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 34567789999999998888999999986432221 1 12345778899998842 356888999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++.+..+||++++|++|++++.|+++++..
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999985 3 7899999999999999999999999999999999988754
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-52 Score=382.33 Aligned_cols=222 Identities=38% Similarity=0.649 Sum_probs=192.9
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CC
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~ 132 (298)
..++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 36 ~~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 567899999999995 4679999999999999999999999999999999999997 689999999998853 23
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC-ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK-LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
...++++++|+||++.+|+.|+.||+.++....+.. ...+++.++++.+++.. +..++++.+|||||||||+||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra 194 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 345678899999999888789999998764332221 12456788999999842 35688999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEE-EEeCCEEEEeeChhhhhc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC-LLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~-vl~~G~i~~~g~~~~~~~ 284 (298)
|+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++.+..+|||++ +|++|++++.|+++++..
T Consensus 195 L~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~ 269 (285)
T PRK14254 195 IAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269 (285)
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999965 4799999999999999999975 679999999999888753
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=380.55 Aligned_cols=231 Identities=37% Similarity=0.578 Sum_probs=193.9
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 133 (298)
.++++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 22 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 45899999999995 5679999999999999999999999999999999999997 699999999998853 233
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc---cHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|++||+.++....+... .++.+.++++.+++. .+..++++.+||||||||++|||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 456778999999999888899999987643222111 123456667776432 13567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-C
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-K 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~ 286 (298)
||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++.+..+||++++|++|++++.|+++++... .
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 258 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPS 258 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCC
Confidence 99999999999999999999999999999999864 68999999999999999999999999999999999887543 3
Q ss_pred ChHHHHHh
Q 022337 287 HPMALRFL 294 (298)
Q Consensus 287 ~~~~~~~~ 294 (298)
+.....|.
T Consensus 259 ~~~~~~~~ 266 (271)
T PRK14238 259 DKRTEDYI 266 (271)
T ss_pred CHHHHHHH
Confidence 33444443
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=370.65 Aligned_cols=209 Identities=30% Similarity=0.580 Sum_probs=186.9
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|+
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSL 75 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEE
Confidence 47899999995 567999999999999999999999999999999999999999999999999875321 3579999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
||++.+++ .|++||+.++....+. ...++.++++.++++ +..++++.+|||||+||++||||++.+|++|||||||
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGL--PDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCC--CHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99998887 5999999875433222 345788899999996 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+|||+.+++.+.+.|++++++ |.|||++|||++.+..+|||+++|++|++++.|++.+
T Consensus 153 ~~LD~~~~~~l~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 153 NGLDPIGIQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999998754 8999999999999999999999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-52 Score=413.83 Aligned_cols=221 Identities=29% Similarity=0.441 Sum_probs=194.6
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|+++
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 359999999999643 4799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|++|++.+|+.|++||+.++.. ..+++++.++++..++++ ...++.+..||||||||++|||||+
T Consensus 392 ~~v~q~~~lf~~ti~~Ni~~~~~----~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall 467 (569)
T PRK10789 392 AVVSQTPFLFSDTVANNIALGRP----DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL 467 (569)
T ss_pred EEEccCCeeccccHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998732 234566777777777642 1233556789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
++|++|||||||++||+.+++.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|++++.|+++++.+....+
T Consensus 468 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~y 543 (569)
T PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLAQQSGWY 543 (569)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHHHcCChH
Confidence 99999999999999999999999999998853 899999999999885 59999999999999999999886543333
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=373.51 Aligned_cols=227 Identities=36% Similarity=0.595 Sum_probs=197.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|+
T Consensus 1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEE
Confidence 46899999995 5689999999999999999999999999999999999999999999999999875443 35789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+|++.+|+. |+.||+.++...++.. ...+++.++++.+++. ++.++.+.+||+|||||++|||||+.+|+++||||
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999998874 9999998764332221 1234677899999996 57899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
||+|||+.+++.+.+.|+++.++.|.|||++||+++++..+|||+++|++|++++.++++++... .+++...|.
T Consensus 157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~ 231 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFI 231 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCCchHHHHHhc
Confidence 99999999999999999998765589999999999999999999999999999999988877542 234555443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=370.46 Aligned_cols=208 Identities=34% Similarity=0.555 Sum_probs=180.3
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHHHhcc
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----VLSLRRK 139 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~----~~~~~~~ 139 (298)
+.+ ||+|+|+ ++.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++.
T Consensus 2 ~~~-~l~~~~~-~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLP-DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecC-Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 344 8999995 4444 99999999 999999999999999999999999999999999999875321 2245678
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
++|+||++.+++ .|+.||+.++.........++++.++++.+++. +..++++.+||||||||++|||||+.+|++|||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999887 599999987643211112345678899999996 578899999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||||+|||+.+++.+.+.|++++++.|+|||++|||++++..+||++++|++|++++.|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999997655899999999999999999999999999998754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=383.39 Aligned_cols=232 Identities=41% Similarity=0.611 Sum_probs=196.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--C
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDL--D 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~~--~ 132 (298)
..++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... .
T Consensus 36 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 456899999999995 4579999999999999999999999999999999999864 4999999999987542 2
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+.|+.||+.++....+.. ..++++.++++.+++. .+..++++.+||||||||++||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 234577899999999988789999999864332221 1234567788888873 1356888999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA- 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~- 285 (298)
|||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++.+..+|||+++|++|++++.|+++++...
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~~ 272 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNP 272 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999864 58999999999999999999999999999999998887542
Q ss_pred CChHHHHHh
Q 022337 286 KHPMALRFL 294 (298)
Q Consensus 286 ~~~~~~~~~ 294 (298)
.+.+.+.|.
T Consensus 273 ~~~~~~~~~ 281 (286)
T PRK14275 273 KDRMTEDYI 281 (286)
T ss_pred CcHHHHHHH
Confidence 344444443
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-52 Score=378.42 Aligned_cols=229 Identities=37% Similarity=0.593 Sum_probs=194.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 133 (298)
.++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+.
T Consensus 8 ~~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 8 ETVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred ceEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 45899999999995 5679999999999999999999999999999999999986 489999999998742 234
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC-ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK-LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral 209 (298)
..++++++|+||++.+|+.|+.||+.++....+.. ...+++.++++.+++.. ...++.+.+||||||||++|||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 45677899999999888789999999865332211 12345667788888732 246788999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe---------CCEEEEeeChh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV---------NGEIVEVLKPD 280 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~---------~G~i~~~g~~~ 280 (298)
+.+|++|||||||+|||+.+++.+.+.|.++.+ +.|||++||+++.+..+|||+++|+ +|++++.|+++
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTE 244 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHH
Confidence 999999999999999999999999999999964 5899999999999999999999998 89999999999
Q ss_pred hhhc-cCChHHHH
Q 022337 281 LLSE-AKHPMALR 292 (298)
Q Consensus 281 ~~~~-~~~~~~~~ 292 (298)
++.. +.+.....
T Consensus 245 ~~~~~~~~~~~~~ 257 (264)
T PRK14243 245 KIFNSPQQQATRD 257 (264)
T ss_pred HHHhCCCcHHHHH
Confidence 8854 33433333
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=413.21 Aligned_cols=221 Identities=29% Similarity=0.512 Sum_probs=193.5
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 35999999999975567999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|++|++.+|+.|++||+.++.. ..+++++.++++..++++ ...++.+..||||||||++|||||++
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~----~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGRE----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred EEccCCccCcccHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998732 123455555555554421 23456678999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
+|++|||||||++||+.+++.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.+....+
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~--~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~y 563 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRK--NRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQELIQKDGRF 563 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHHHHCCChH
Confidence 9999999999999999999999999998843 899999999999985 59999999999999999999887644333
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=373.96 Aligned_cols=217 Identities=34% Similarity=0.578 Sum_probs=184.8
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|+++.|++. .++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999543 279999999999999999999999999999999999999999999999999876666667788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHH-----HHHHHHHHc--CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTEN-----EVYKLLSLA--DLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||++.+++.|++||+.++..........+ .+.+.++.+ ++. ...++++.+||||||||++|||||+.+|++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999888899999988643211000000 123444444 554 356778999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+||||||++||+.+++.+.+.|+++. + +.|||++|||++.+.. ||++++|++|++++.++++++..
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 99999999999999999999999985 3 7999999999999976 99999999999999999888754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-53 Score=353.72 Aligned_cols=212 Identities=39% Similarity=0.565 Sum_probs=191.8
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 136 (298)
.|+++++++..+.+ ..+|++|+|.|++||.+|||||||||||||+-+++||.+|++|+|++.|+++..++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 68999999877533 3699999999999999999999999999999999999999999999999999887643 33
Q ss_pred h-cceEEEeCCCCCCc-ccHHHHhHhCccccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 R-RKVGMLFQIPALFE-GTVVDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 ~-~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
| +++|||||.+.+.| +|..||+..++.+.+. ......+.+.++.+|+. +.++.+|.+|||||+|||+|||||+..
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCC
Confidence 3 67999999999988 4999999999887773 23345688999999997 578899999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
|++|+.||||.+||..+.+++.+++..+.++.|.|.|+||||...+.+ |+|++-|.+|+++++
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~ 227 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED 227 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence 999999999999999999999999999999999999999999998865 999999999999753
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-52 Score=375.97 Aligned_cols=218 Identities=27% Similarity=0.431 Sum_probs=189.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC----CccEEEECCEeCCCCCHHHHhc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP----PSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p----~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
+++++|++++| ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... ...++
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGR 79 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccc
Confidence 69999999999 35799999999999999999999999999999999999999 999999999988532 22246
Q ss_pred ceEEEeCCCC-CC-c-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch--hhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 139 KVGMLFQIPA-LF-E-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS--FLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 139 ~ig~v~Q~~~-l~-~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
.++|+||++. .| + .|+.+|+.+.....+....++++.++++.+++.+. +.++++.+|||||||||+|||||+.+|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 159 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA 159 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence 7999999985 33 4 48888887643222222234678889999999631 468899999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|||||||+|||+.+++.+.+.|++++++.|.|||++||+++.+..+|||+++|++|++++.++++++..
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999876558999999999999999999999999999999999988754
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=371.18 Aligned_cols=214 Identities=35% Similarity=0.610 Sum_probs=183.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++++|++++|++++.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 37899999999644579999999999999999999999999999999999999999999999999876666667788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+||++.+|+.|++||+.++... ....++.++++.+++.. ...++++.+|||||||||+|||||+.+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPN----ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCC----CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999998888999999876421 12233444444444321 234566799999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|++|||||||+|||+.+++.+++.|+++. + |+|||++||+++.+. .||++++|++|++++.++.+++.
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999985 3 899999999999986 59999999999999988877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-52 Score=372.08 Aligned_cols=228 Identities=39% Similarity=0.616 Sum_probs=198.2
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++.++|+
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEEE
Confidence 47899999995 567999999999999999999999999999999999999999999999999986543 236789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+. |+.||+.+....++.. ...+++.++++.+++. .+.++.+.+||+||+||++|||||+.+|+++||||
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999875 9999998765432221 1235678899999996 57889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 295 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 295 (298)
||+|||+.+++.+.+.|.+++++.|+|+|++||+++.+.++||++++|++|++++.++.+++.. +.+++...|.+
T Consensus 157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 232 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLG 232 (237)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCCCcHHHHHhcc
Confidence 9999999999999999999876448999999999999999999999999999999999888754 23455555544
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=381.01 Aligned_cols=212 Identities=27% Similarity=0.470 Sum_probs=191.0
Q ss_pred eEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++...+...+|++++
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 3789999999953 4579999999999999999999999999999999999997 7999999999998777778889999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCC-----------CChhHHHHHHHHHHHc
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE-----------ISVGQAQRVALARTLA 210 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkQRv~iAral~ 210 (298)
|+||++.+|+.|+++|+.... ....+++.++++.+|+. .+.++++.. ||||||||++|||||+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~-----~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYG-----KWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred EECCCcccchhhHHHHhhhcc-----CCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999996321 12346788899999996 567777766 9999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|+||||||||++||+.+++.+.+.|+++. + ++|||+||||++.+.. ||||++|++|++++.|+++++..
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAF-A-DCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence 9999999999999999999999999999874 3 8999999999999875 99999999999999999999866
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-52 Score=376.07 Aligned_cols=228 Identities=39% Similarity=0.602 Sum_probs=192.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCCCC--HHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDLD--VLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~~~--~~~ 135 (298)
.-+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+ ...
T Consensus 5 ~~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 5 HASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 357899999995 5689999999999999999999999999999999999986 47999999999875432 234
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCC--C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++.++|+||++.+|+.|++||+.++....+. . ..++++.++++.+++.+ ...++.+.+||||||||++||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 163 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARA 163 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHH
Confidence 57789999999998888999999876322221 1 12345778899999853 24577899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~ 287 (298)
|+.+|++|||||||+|||+.+++.+.+.|+++. + |+|||++|||++.+..+|||+++|++|++++.|+++++... .+
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 241 (251)
T PRK14244 164 IAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQS 241 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCCCC
Confidence 999999999999999999999999999999985 3 79999999999999999999999999999999999887543 33
Q ss_pred hHHHHH
Q 022337 288 PMALRF 293 (298)
Q Consensus 288 ~~~~~~ 293 (298)
.....|
T Consensus 242 ~~~~~~ 247 (251)
T PRK14244 242 SKTKRY 247 (251)
T ss_pred hHHHHh
Confidence 444433
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=368.82 Aligned_cols=205 Identities=39% Similarity=0.599 Sum_probs=180.5
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|+++.|+++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 7899999999542 469999999999999999999999999999999999999999999999999866555556778999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCC-----------CCCChhHHHHHHHHHHHcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG-----------GEISVGQAQRVALARTLAN 211 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~~LSgGqkQRv~iAral~~ 211 (298)
+||++.+++.|+.||+.++... ...+++.++++.+++. ++.++.+ .+||||||||++|||||+.
T Consensus 83 ~~q~~~~~~~tv~e~l~~~~~~----~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 83 VPQDVTLFYGTLRDNITLGAPL----ADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred eCCCCccccchHHHHhhcCCCC----CCHHHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 9999998878999999875321 1244567788888885 4556544 6999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
+|++|||||||+|||+.+++.+++.|+++++ ++|||++|||++.+ .+||++++|++|++++.
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999865 48999999999987 69999999999999764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=358.32 Aligned_cols=232 Identities=35% Similarity=0.528 Sum_probs=203.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC---------
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL--------- 131 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~--------- 131 (298)
++.++++|+.|+| +...+|++||++-++|+++.|||.|||||||+||||+=|.+|+.|+|.++|+.+.-.
T Consensus 4 ~~~l~v~dlHK~~-G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 4 ENALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ccceehhHHHhhc-ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 3569999999999 467899999999999999999999999999999999999999999999999987421
Q ss_pred -C---HHHHhcceEEEeCCCCCCc-ccHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH
Q 022337 132 -D---VLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 132 -~---~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv 203 (298)
+ ...+|.++|+|||+++|++ +||.||+.-.+. ..+.+ ...++++.+|.++|+. +..+.||..|||||+||+
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRV 161 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHH
Confidence 1 2346778999999999998 599999986642 22322 3346788899999997 578899999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|||||+.+|+++|+|||||+|||+..-++++.+++++++ |+|.++|||.|.++.+.+.+|+++++|.|-+.|+|+++.
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence 9999999999999999999999999999999999999876 999999999999999999999999999999999999986
Q ss_pred cc-CChHHHHHhh
Q 022337 284 EA-KHPMALRFLQ 295 (298)
Q Consensus 284 ~~-~~~~~~~~~~ 295 (298)
.+ ..+-.++|+.
T Consensus 241 ~nP~S~RlkqFls 253 (256)
T COG4598 241 GNPQSPRLKQFLS 253 (256)
T ss_pred cCCCCHHHHHHHH
Confidence 54 4445555554
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-52 Score=371.83 Aligned_cols=227 Identities=36% Similarity=0.591 Sum_probs=195.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
|+++|++++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++|+
T Consensus 1 l~~~~l~~~~~-~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWK-E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYV 76 (235)
T ss_pred CeeEeEEEEeC-C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEE
Confidence 46899999995 3 48999999999999999999999999999999999999999999999999876443 35789999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+ .|+.||+.++....+.. ...+++.++++.+++. ...++++.+||||||||++||||++.+|++++|||
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 99999887 59999998764322221 1234678899999996 57899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 295 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 295 (298)
||+|||+.+++.+.+.|+++.++.|.|+|++||+++.+..+||++++|++|++++.++++++.+. .++....+.+
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 231 (235)
T cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLG 231 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCcccHHHHHHhC
Confidence 99999999999999999998765589999999999999999999999999999999998877542 2334444443
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-52 Score=374.31 Aligned_cols=228 Identities=38% Similarity=0.601 Sum_probs=191.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----ccEEEECCEeCCC--CCHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITD--LDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-----~G~I~i~g~~i~~--~~~~~ 135 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. .+...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 689999999995 568999999999999999999999999999999999999875 8999999999864 23345
Q ss_pred HhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc---cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++.++|+||++.+|+. |+.||+.++....+... ..+.+.++++.+++.. +..++++.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 67789999999998874 99999987543222111 1234556666676531 34678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~ 287 (298)
|+.+|++|||||||++||+.+++.+.+.|+++++ ++|+|++||+++.+..+|||+++|++|++++.|+++++... .+
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 240 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRD 240 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCc
Confidence 9999999999999999999999999999999853 68999999999999999999999999999999999887543 33
Q ss_pred hHHHHH
Q 022337 288 PMALRF 293 (298)
Q Consensus 288 ~~~~~~ 293 (298)
.....|
T Consensus 241 ~~~~~~ 246 (252)
T PRK14272 241 ERTEAY 246 (252)
T ss_pred HHHHHH
Confidence 444444
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=371.83 Aligned_cols=215 Identities=38% Similarity=0.611 Sum_probs=184.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999995446799999999999999999999999999999999999999999999999998776666677889999
Q ss_pred eCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCC----------chhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 144 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
||++.+|+.|+.||+.++... .....+.+.++..++. +...++++.+||||||||++|||||+.+|
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPD----ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred CCCChhhcchHHHHHhhcCCC----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999988999999886421 1122233333333331 12456678899999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|||||||+|||+.++..+.+.|.++++ |+|||++||+++.+.. ||++++|++|++++.|+.+++.+.
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999854 8999999999999965 999999999999999998877553
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=412.02 Aligned_cols=218 Identities=29% Similarity=0.467 Sum_probs=193.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~i 140 (298)
++++++|++++|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+... .++.+
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 5799999999995 567999999999999999999999999999999999999999999999999986544333 35679
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcccc---C-CCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLR---G-KKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~---~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+|+||++.+++. |++||+.++.... + ... .++++.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999988874 9999999874321 1 111 234678899999996 4678999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
++|||||||++||+.+++.+++.|++++++ |.|||++|||++.+..+||++++|++|++++.++++++
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999754 89999999999999999999999999999999887765
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=377.05 Aligned_cols=221 Identities=43% Similarity=0.640 Sum_probs=192.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 133 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 45899999999995 5679999999999999999999999999999999999988 489999999999854 233
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++.+ +..++.+.+|||||||||+|||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 181 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR 181 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence 45678899999999988889999998764322221 12345778889888852 3567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++||+++.+..+|||+++|++|++++.|+++++..
T Consensus 182 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 182 AIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence 99999999999999999999999999999999964 6899999999999999999999999999999999888754
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-52 Score=409.71 Aligned_cols=218 Identities=28% Similarity=0.479 Sum_probs=195.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh-cc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR-RK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~-~~ 139 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+....+ +.
T Consensus 9 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 45899999999995 56799999999999999999999999999999999999999999999999998766554443 56
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+||+||++.+++. ||+||+.++... ....++++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPK--RQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhccccc--chHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999988875 999999987532 122345688899999997 567899999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 9999999999999999999999764 899999999999999999999999999999999887763
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=411.86 Aligned_cols=220 Identities=25% Similarity=0.484 Sum_probs=194.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHH-Hh
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDVLS-LR 137 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~~ 137 (298)
+++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+... .+
T Consensus 3 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 3 EYLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred CceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 35899999999995 56799999999999999999999999999999999999996 8999999999987655443 35
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCcccc--C-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLR--G-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~--~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+.+||+||++.+++. |++||+.++...+ + .. ...+++.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhc
Confidence 779999999988874 9999999875432 1 11 1234678899999996 57889999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|++|||||||++||+.++..+++.|.++++ .|+|||++|||++.+..+||++++|++|+++..|+++++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999999999975 4899999999999999999999999999999999887653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-52 Score=411.38 Aligned_cols=220 Identities=27% Similarity=0.423 Sum_probs=194.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~ 139 (298)
.++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+... .++.
T Consensus 3 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 3 TPYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred CceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 35899999999995 567999999999999999999999999999999999999999999999999987666443 3467
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccc----cCC---C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQL----RGK---K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~----~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++|+||++.+++. ||+||+.++... ++. . ...+++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHH
Confidence 9999999988874 999999876421 121 1 1234678899999996 568999999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+.+|++|||||||+|||+.++..+++.|++++++ |+|||+||||++.+..+||++++|++|+++..|+++++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999999765 899999999999999999999999999999999887753
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=410.78 Aligned_cols=217 Identities=35% Similarity=0.557 Sum_probs=193.1
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++|++++|+++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|++||.++.+++...++++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 359999999999642 479999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
++|+||++.+|++|++|||.++.. ..+++++.++++.+++.+. ...+.+..||||||||++||||+
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~----~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRP----DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCC----CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999998632 2345678888888776421 12334668999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+++|++||||||||+||+.+++.+++.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHHc
Confidence 999999999999999999999999999999853 799999999998875 6999999999999999999988654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=378.81 Aligned_cols=222 Identities=38% Similarity=0.569 Sum_probs=192.8
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCCC-H
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDLD-V 133 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~~-~ 133 (298)
..++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+ .
T Consensus 18 ~~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 18 AAPAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cCcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 356899999999995 56899999999999999999999999999999999999986 7999999999986543 2
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccC-CCc--cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG-KKL--TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~-~~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|+++|+.++..... ... ..+.+.++++.+++.. +..++.+.+||||||||++|||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 356778999999999888899999987643211 111 1234567888889853 2457889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++||+++.+..+|||+++|++|++++.|+++++.+
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999864 4899999999999999999999999999999999988754
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=405.38 Aligned_cols=235 Identities=35% Similarity=0.540 Sum_probs=203.1
Q ss_pred CeEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC----ccEEEECCEeCCCCCHH
Q 022337 62 PKFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP----SGTVFLDGRDITDLDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~----~G~I~i~g~~i~~~~~~ 134 (298)
++++++||++.|... ..+++||||+|.+||++||+|+|||||||+.+.|+|++++. +|+|.++|+++..++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 489999999998533 25999999999999999999999999999999999999987 89999999998877654
Q ss_pred HH---h-cceEEEeCCCC--CCc-ccHHHHhHhCccccCC---CccHHHHHHHHHHcCCCchhh-cCCCCCCChhHHHHH
Q 022337 135 SL---R-RKVGMLFQIPA--LFE-GTVVDNIRYGPQLRGK---KLTENEVYKLLSLADLDSSFL-NKTGGEISVGQAQRV 203 (298)
Q Consensus 135 ~~---~-~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGqkQRv 203 (298)
+. | +.|+|+||+|. |-| .||.+.|.-....++. .+..+++.++++++|+++... +++|++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 33 3 57999999984 335 4887777654444331 234567889999999975433 469999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
.||+||+.+|++||+||||++||+..+.+++++|+++.++.|.++|+||||++.+.++||||+||++|+++|.|+++++.
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999985
Q ss_pred -ccCChHHHHHhhh
Q 022337 284 -EAKHPMALRFLQL 296 (298)
Q Consensus 284 -~~~~~~~~~~~~~ 296 (298)
++.|+|.+.+...
T Consensus 244 ~~p~hpYT~~Ll~a 257 (539)
T COG1123 244 SNPQHPYTRGLLAA 257 (539)
T ss_pred hccCCcccHHHHhh
Confidence 4578888776543
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=408.72 Aligned_cols=216 Identities=33% Similarity=0.557 Sum_probs=189.4
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++|++++|+++ +++|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 469999999999643 5799999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCC----------chhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|+||++.+|+.|++||+.++.. ..+++++.++++..+++ +...++.+..||||||||++||||++
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGE----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred EEecCCcccccccHHHHHhccCC----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999986431 12345555555555442 13455667899999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
++|++|||||||++||+.+++.+.+.|.++.+ .|+|+|++||+++.+ +.||+|++|++|++++.|+++++.
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999998853 389999999999977 569999999999999999988764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=413.41 Aligned_cols=236 Identities=29% Similarity=0.454 Sum_probs=200.6
Q ss_pred CCCeEEEEeEEEEeCC----------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 60 QKPKFRVRELRKESDD----------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~----------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
..++++++|+++.|++ ++.+|+|+||+|++||++||+||||||||||+|+|+|++ |++|+|+++|+++.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEcc
Confidence 3468999999999952 357999999999999999999999999999999999999 59999999999986
Q ss_pred CCCHH---HHhcceEEEeCCC--CCCc-ccHHHHhHhCccccC--CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhH
Q 022337 130 DLDVL---SLRRKVGMLFQIP--ALFE-GTVVDNIRYGPQLRG--KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQ 199 (298)
Q Consensus 130 ~~~~~---~~~~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 199 (298)
..+.. .+++++||+||++ .+++ .||.||+.++...+. .. ..++++.++++.+++.....++++.+|||||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 55432 2366799999997 3676 499999988643221 11 1235678899999996346789999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 200 kQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
||||+|||||+.+|++|||||||+|||+.+++.+++.|++++++.|+|||+||||++.+..+|||+++|++|++++.|++
T Consensus 431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 510 (529)
T PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999765589999999999999999999999999999999999
Q ss_pred hhhhc-cCChHHHHHhhh
Q 022337 280 DLLSE-AKHPMALRFLQL 296 (298)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~ 296 (298)
+++.+ +.+.+.+.+...
T Consensus 511 ~~~~~~~~~~~~~~~~~~ 528 (529)
T PRK15134 511 ERVFAAPQQEYTRQLLAL 528 (529)
T ss_pred HHHhcCCCChHHHHHhhc
Confidence 88754 345566666543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=377.25 Aligned_cols=231 Identities=37% Similarity=0.588 Sum_probs=194.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--C
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL--D 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~--~ 132 (298)
..++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... .
T Consensus 17 ~~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 17 DHSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CCceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 456899999999995 56799999999999999999999999999999999999863 699999999988532 2
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC-ccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK-LTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
...+++.++|+||++.+|+.|+.||+.++....+.. ..++.+.++++.+++. .+..++++.+|||||||||+||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra 175 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARA 175 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHH
Confidence 334577899999999988779999998864322211 1234466778888863 135678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe---------CCEEEEeeCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV---------NGEIVEVLKP 279 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~---------~G~i~~~g~~ 279 (298)
|+.+|++|||||||+|||+.++..+.+.|.++++ +.|||++|||++.+.++|||+++|+ +|++++.|++
T Consensus 176 L~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 176 IAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 9999999999999999999999999999999864 6899999999999999999999998 8999999999
Q ss_pred hhhhc-cCChHHHHH
Q 022337 280 DLLSE-AKHPMALRF 293 (298)
Q Consensus 280 ~~~~~-~~~~~~~~~ 293 (298)
+++.. +.+.....|
T Consensus 254 ~~~~~~~~~~~~~~~ 268 (274)
T PRK14265 254 EQMFGSPQTKEAREY 268 (274)
T ss_pred HHHHhCCCCHHHHHH
Confidence 88754 334443444
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=375.04 Aligned_cols=222 Identities=37% Similarity=0.574 Sum_probs=193.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----ccEEEECCEeCCC--CCHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITD--LDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-----~G~I~i~g~~i~~--~~~~ 134 (298)
++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+..
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 4799999999995 457999999999999999999999999999999999999985 8999999998742 2334
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.+++.++|+||++.+|+.|++||+.++....+. . ...+++.++++.+++.+ +..++++.+||||||||++||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 567789999999998888999999875322221 1 12345778889998742 35678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC-----CEEEEeeChhhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-----GEIVEVLKPDLLS 283 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~-----G~i~~~g~~~~~~ 283 (298)
|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++.+.++||++++|++ |++++.|+++++.
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 99999999999999999999999999999998654589999999999999999999999999 9999999999885
Q ss_pred c
Q 022337 284 E 284 (298)
Q Consensus 284 ~ 284 (298)
+
T Consensus 245 ~ 245 (261)
T PRK14258 245 N 245 (261)
T ss_pred h
Confidence 4
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=371.51 Aligned_cols=221 Identities=39% Similarity=0.614 Sum_probs=189.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC--C---CccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--P---PSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~--p---~~G~I~i~g~~i~~~--~~ 133 (298)
.++++++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 35799999999995 5679999999999999999999999999999999999975 5 599999999988532 23
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc---cHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|+++|+.++....+... .++++.+.++.+++. .+..++.+.+||||||||++|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 345678999999999888899999987643222111 124466778888763 13567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|+|++|||++.+.++||++++|++|++++.|++.++..
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999864 5899999999999999999999999999999999887754
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-52 Score=372.00 Aligned_cols=213 Identities=39% Similarity=0.668 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 64 FRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 64 l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999953 246999999999999999999999999999999999999999999999999987666556677899
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHc-----------CCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLA-----------DLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
|+||++.+++.|++||+.++.... ..++..+.++.. +++ ...++++.+|||||||||+|||||+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~ 155 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDA----TDEEVEEAAKKANIHDFIMSLPDGYD-TLVGERGSQLSGGQKQRIAIARALL 155 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCC----CHHHHHHHHHHcChHHHHHhhccccc-eeeccCCccCCHHHHHHHHHHHHHh
Confidence 999999888789999998864321 112222223322 332 2456778999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||+|||+.+++.+.+.|+++. + |+|||++||+++++. +||++++|++|++++.++.+++..
T Consensus 156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 156 RNPKILLLDEATSALDAESEKLVQEALDRAM-K-GRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999999999985 3 899999999999996 899999999999999998877754
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=359.77 Aligned_cols=219 Identities=31% Similarity=0.441 Sum_probs=199.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+.+|++++-. ++.+|+++||++++||++||+||||||||||||.|+|-+.|++|++.++|.++..++..++.++-+.
T Consensus 1 mi~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 689999999984 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC-CcccHHHHhHhCccccCC--Cc-cH-HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC------
Q 022337 143 LFQIPAL-FEGTVVDNIRYGPQLRGK--KL-TE-NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN------ 211 (298)
Q Consensus 143 v~Q~~~l-~~~tv~eni~~~~~~~~~--~~-~~-~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~------ 211 (298)
+||+..+ |+.||.|.+.+|...++. .. .+ +-++++|...++. .+..+...+|||||||||.+||+|++
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~ 158 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVP 158 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh-hhhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence 9999986 889999999999654432 21 22 2378899999996 68999999999999999999999975
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++++|+||||||+||...+...+++.++++++ |..|+.|-||++.+..|||||++|++||+++.|+|++...
T Consensus 159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 159 SGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred CCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 44599999999999999999999999999986 8999999999999999999999999999999999998765
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=373.80 Aligned_cols=229 Identities=35% Similarity=0.565 Sum_probs=193.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~--~~~~ 134 (298)
++++++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. ....
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 4799999999995 56799999999999999999999999999999999999985 48999999998853 2334
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.++++++|+||++.+|+.|++||+.++....+. . ...+.+.++++.+++.+ +..++++.+||||||||++||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 567789999999998888999999876432221 1 12345678888888731 35678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe-----CCEEEEeeChhhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-----NGEIVEVLKPDLLS 283 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~-----~G~i~~~g~~~~~~ 283 (298)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++.+..+||++++|+ +|++++.|+++++.
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 9999999999999999999999999999999864 5899999999999999999999998 59999999999875
Q ss_pred cc-CChHHHHH
Q 022337 284 EA-KHPMALRF 293 (298)
Q Consensus 284 ~~-~~~~~~~~ 293 (298)
+. .+.....|
T Consensus 243 ~~~~~~~~~~~ 253 (259)
T PRK14260 243 SNPLDSRTRDY 253 (259)
T ss_pred cCCCChHHHHh
Confidence 42 33343433
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=444.98 Aligned_cols=218 Identities=33% Similarity=0.515 Sum_probs=195.5
Q ss_pred CeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----------------------
Q 022337 62 PKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP----------------------- 116 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p----------------------- 116 (298)
..|+++||+|+|++ +.++|+|+||+|++|+++||+||||||||||+++|+|+|+|
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 35999999999964 34799999999999999999999999999999999999999
Q ss_pred -------------------------------CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 117 -------------------------------PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 117 -------------------------------~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
++|+|++||.++++++...+|++||||+|+|.||++|++|||.++..
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-- 1321 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-- 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC--
Confidence 69999999999999999999999999999999999999999999842
Q ss_pred CCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH
Q 022337 166 GKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235 (298)
Q Consensus 166 ~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~ 235 (298)
..+++++.++++..++++. .....+..||||||||++|||||+++|+|||||||||+||+.+++.+.+
T Consensus 1322 --~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1322 --DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred --CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 3456788899998887531 2334567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC----CEEE-EeeChhhhhc
Q 022337 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN----GEIV-EVLKPDLLSE 284 (298)
Q Consensus 236 ~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~----G~i~-~~g~~~~~~~ 284 (298)
.|.++....++|+|+|||+++.+. .||+|++|++ |+++ +.|+++++..
T Consensus 1400 ~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1400 TIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999885223899999999999986 5999999999 9955 8999999976
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=373.15 Aligned_cols=231 Identities=39% Similarity=0.614 Sum_probs=196.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC------EeCCCCCH
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG------RDITDLDV 133 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g------~~i~~~~~ 133 (298)
.+|+++++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| .++...+.
T Consensus 7 ~~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 7 AEDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hhhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 467899999999995 67899999999999999999999999999999999999999997776665 45544455
Q ss_pred HHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCC-Cc--cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK-KL--TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
..+++.++|+||++.+|+. |++||+.++....+. .. ..+++.++++.+++.. +..++.+..||+|||||++||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 165 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHH
Confidence 5667889999999998875 999999976432221 11 1245778899999852 356788999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-c
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-A 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~ 285 (298)
|||+.+|+++||||||++||+.+++.+.+.|.++.+ +.|||++||+++.+..+||++++|++|++++.|+++++.. +
T Consensus 166 ral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~ 243 (257)
T PRK14246 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243 (257)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999854 6899999999999999999999999999999999988754 3
Q ss_pred CChHHHHH
Q 022337 286 KHPMALRF 293 (298)
Q Consensus 286 ~~~~~~~~ 293 (298)
.+++.+.|
T Consensus 244 ~~~~~~~~ 251 (257)
T PRK14246 244 KNELTEKY 251 (257)
T ss_pred CcHHHHHH
Confidence 44565555
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=364.06 Aligned_cols=206 Identities=32% Similarity=0.551 Sum_probs=181.8
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 7899999999643 479999999999999999999999999999999999999999999999999877676677889999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHHHHcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+||++.+++.|++||+.+... ...+++.++++.+++.+ .. ++++.+||+|||||++|||||+.
T Consensus 83 ~~q~~~l~~~tv~enl~~~~~-----~~~~~~~~~~~~~~l~~-~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~ 156 (221)
T cd03244 83 IPQDPVLFSGTIRSNLDPFGE-----YSDEELWQALERVGLKE-FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR 156 (221)
T ss_pred ECCCCccccchHHHHhCcCCC-----CCHHHHHHHHHHhCcHH-HHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc
Confidence 999999888899999975421 12445666777777642 33 46789999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
+|+++||||||++||+.+++.+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.|+
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 157 KSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999853 6899999999999975 99999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-53 Score=360.15 Aligned_cols=221 Identities=32% Similarity=0.461 Sum_probs=205.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++|+| +++.+++++|++|++|.+++|||||||||||||.++++|+++++|+|+++|.++..++.+++.++++.
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 68999999999 46789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCc-ccHHHHhHhCcccc--CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLR--GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~--~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+-|+.++-. .||+|-+.||...+ |. .+++..+.++++.++|. ++.+++..+||||||||..||+.++++.++++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl 158 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL 158 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcEEE
Confidence 999998765 59999999996433 22 23456689999999997 69999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
||||.++||-++...+|+.|++++++.|+||++|-||++++..|+|+|+-|++|+++..|+|+++.++
T Consensus 159 LDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 159 LDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred ecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999998653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-51 Score=443.71 Aligned_cols=216 Identities=30% Similarity=0.500 Sum_probs=196.3
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..|+++||+++|+++ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.|||.|+.+++..++|++|
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 369999999999654 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
++|||+|.+|++|++|||.++. ..+++++.++++.+++.+. ...+.+..||||||||++|||||+
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~-----~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL 1390 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFN-----EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL 1390 (1622)
T ss_pred EEECCCCccccccHHHHhCcCC-----CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998653 2356788899998887531 223346689999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|+|||||||||+||+.+.+.+.+.|++..+ ++|+|+|+|+++.+.. ||||+||++|+|++.|+++++.+.
T Consensus 1391 r~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~--~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1391 RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998754 8999999999999976 899999999999999999998764
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=364.44 Aligned_cols=208 Identities=31% Similarity=0.510 Sum_probs=182.9
Q ss_pred EEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHh
Q 022337 64 FRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLR 137 (298)
Q Consensus 64 l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~ 137 (298)
++++|+++.|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999532 5699999999999999999999999999999999999999999999999998655432 356
Q ss_pred cceEEEeCCCCCCc-ccHHHHhHhCccccC-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 138 RKVGMLFQIPALFE-GTVVDNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+.++|+||++.+|+ .|+.||+.++..... .. ...+++.++++.+++. +..++++.+||+|||||++|||||+.+|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999887 599999997643321 11 1234688899999996 5788999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
++|||||||+|||+.+++.+.+.|+++.++.++|+|++|||++.. ++||++++|++|++
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999999998765589999999999854 79999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=369.75 Aligned_cols=230 Identities=36% Similarity=0.534 Sum_probs=195.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 133 (298)
++.+.+++++++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++... ..
T Consensus 6 ~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 45689999999994 56899999999999999999999999999999999999987 799999999998542 22
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC-ccHHHHHHHHHHcCCCch---hhcCCCCCCChhHHHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK-LTENEVYKLLSLADLDSS---FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkQRv~iAral 209 (298)
..+++.++|+||++.+|..|+.||+.++....... ...+++.++++.+++... ..++++.+|||||+||++|||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral 164 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI 164 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 34567899999999988789999999875332211 223568889999998532 34577889999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe--------CCEEEEeeChhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--------NGEIVEVLKPDL 281 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~--------~G~i~~~g~~~~ 281 (298)
+.+|++|||||||+|||+.++..+.+.|+++. + +.|+|++||+++.+.++|||+++|+ +|++++.|++++
T Consensus 165 ~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~ 242 (261)
T PRK14263 165 ATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQ 242 (261)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHH
Confidence 99999999999999999999999999999985 3 7899999999999999999999996 899999999988
Q ss_pred hhcc-CChHHHHH
Q 022337 282 LSEA-KHPMALRF 293 (298)
Q Consensus 282 ~~~~-~~~~~~~~ 293 (298)
+.+. .++..+.|
T Consensus 243 ~~~~~~~~~~~~~ 255 (261)
T PRK14263 243 IFQNPREQLTSDY 255 (261)
T ss_pred HHhCCCcHHHHHH
Confidence 7542 33344433
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=368.67 Aligned_cols=220 Identities=29% Similarity=0.450 Sum_probs=188.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHHhc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
+++++++|+++.|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|+++|.++...+....++
T Consensus 5 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 45799999999995 45799999999999999999999999999999999998 6899999999999987665444333
Q ss_pred -ceEEEeCCCCCCcc-cHHHHhHhCcccc----CCC-c----cHHHHHHHHHHcCCCchhhcCCCC-CCChhHHHHHHHH
Q 022337 139 -KVGMLFQIPALFEG-TVVDNIRYGPQLR----GKK-L----TENEVYKLLSLADLDSSFLNKTGG-EISVGQAQRVALA 206 (298)
Q Consensus 139 -~ig~v~Q~~~l~~~-tv~eni~~~~~~~----~~~-~----~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkQRv~iA 206 (298)
.++|+||++.+++. |+.+|+.+..... ... . ..+++.++++.+++.+...++++. +|||||||||+||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 48999999998875 9999988653211 100 0 124567889999996346778887 5999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEEEeeChhhh
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|||+.+|++|||||||+|||+.+++.+.+.|+++++ .|.|||++|||++.+..+ ||++++|++|++++.|+++..
T Consensus 164 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999999875 489999999999999876 899999999999999988743
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-51 Score=373.95 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=185.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.++
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 369999999999645679999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEeCCCCC---CcccHHHHhHhCccc----cCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 142 MLFQIPAL---FEGTVVDNIRYGPQL----RGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 142 ~v~Q~~~l---~~~tv~eni~~~~~~----~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|+||++.+ ++.++.+|+.++... ... ....+++.++++.+++. +..++++.+||||||||++|||||+.+
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999865 234789998764210 011 11234577889999996 578899999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|++|||||||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+||+++++ +|++++.|+++++.
T Consensus 161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 9999999999999999999999999999754 899999999999999999999877 89999999988764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=369.06 Aligned_cols=231 Identities=35% Similarity=0.573 Sum_probs=195.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC----
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD---- 130 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~---- 130 (298)
..++|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 13 ~~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 13 TQQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CCceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 356799999999995 56799999999999999999999999999999999999985 79999999987642
Q ss_pred CCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHH
Q 022337 131 LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 131 ~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~ 204 (298)
.....+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++. .+..++.+.+||||||||++
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 22345677899999999988889999998764322211 1235577788888773 13567889999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+.+|+++||||||+|||+.+++.+.+.|+++++ +.|||+|||+++++..+|||+++|++|++++.|+.+++..
T Consensus 172 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 249 (265)
T PRK14252 172 IARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI 249 (265)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999864 6899999999999999999999999999999999988753
Q ss_pred -cCChHHHHH
Q 022337 285 -AKHPMALRF 293 (298)
Q Consensus 285 -~~~~~~~~~ 293 (298)
+.+++.+.|
T Consensus 250 ~~~~~~~~~~ 259 (265)
T PRK14252 250 KPKNKQTEDY 259 (265)
T ss_pred CCCCHHHHHH
Confidence 334444444
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=366.13 Aligned_cols=228 Identities=44% Similarity=0.689 Sum_probs=193.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--CHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDL--DVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~~--~~~~ 135 (298)
+++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... +...
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 589999999995 5679999999999999999999999999999999999974 4899999999998642 2345
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++++++|+||++.+|+.|+.||+.++....+. . ..++++.++++.+++.+ ...++++.+||||||||++|||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 67889999999998888999999876432221 1 12345778889988742 346788999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CCh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHP 288 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~ 288 (298)
+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++.+..+||++++|++|++++.|+++++.+. .++
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~~~~ 239 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDK 239 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCCCCh
Confidence 999999999999999999999999999999853 78999999999999999999999999999999999887533 334
Q ss_pred HHHHH
Q 022337 289 MALRF 293 (298)
Q Consensus 289 ~~~~~ 293 (298)
....|
T Consensus 240 ~~~~~ 244 (250)
T PRK14266 240 RTEDY 244 (250)
T ss_pred HHHHH
Confidence 43334
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=414.01 Aligned_cols=224 Identities=28% Similarity=0.397 Sum_probs=192.9
Q ss_pred CCeEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC--------
Q 022337 61 KPKFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT-------- 129 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~-------- 129 (298)
+++|+++|+++.|++ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 468999999999953 236999999999999999999999999999999999999999999999997542
Q ss_pred --CCCHH---HHh-cceEEEeCCC--CCCc-ccHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCc--hhhcCCCCCC
Q 022337 130 --DLDVL---SLR-RKVGMLFQIP--ALFE-GTVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDS--SFLNKTGGEI 195 (298)
Q Consensus 130 --~~~~~---~~~-~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~L 195 (298)
..+.. .+| +.||||||++ .+++ .||.||+.++...+ +.. ...+++.++++.+|+.+ +..++++.+|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 11222 233 4799999998 5777 59999999875432 222 12356888999999952 3578999999
Q ss_pred ChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 196 SgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
||||||||+|||||+.+|++|||||||++||+.+++++.++|++++++.|+|||+||||++.+..+||||++|++|++++
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence 99999999999999999999999999999999999999999999976668999999999999999999999999999999
Q ss_pred eeChhhhhc
Q 022337 276 VLKPDLLSE 284 (298)
Q Consensus 276 ~g~~~~~~~ 284 (298)
.|+++++..
T Consensus 250 ~g~~~~~~~ 258 (623)
T PRK10261 250 TGSVEQIFH 258 (623)
T ss_pred cCCHHHhhc
Confidence 999887743
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=365.24 Aligned_cols=210 Identities=33% Similarity=0.526 Sum_probs=180.7
Q ss_pred CCCeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 60 QKPKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
..++++++|++++|++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45689999999999642 3699999999999999999999999999999999999999999999999988665555567
Q ss_pred cceEEEeCCCCCCcccHHHHhHhCccccCCCc-cH----HHHHHHHHHc--CCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL-TE----NEVYKLLSLA--DLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~-~~----~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+.++|+||++.+|+.|++||+.++........ .+ ..+.+.++.+ |+. +..++++.+|||||||||+|||||+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYD-TEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCCcCCHHHHHHHHHHHHHh
Confidence 78999999998888899999987643211100 00 1245667777 775 4678889999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++|||++++. .||++++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999854 589999999999996 5999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-51 Score=357.35 Aligned_cols=202 Identities=32% Similarity=0.512 Sum_probs=177.1
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++++.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 469999999999642 4799999999999999999999999999999999999999999999999998766666677889
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+|+||++.+|+.|++||+.+... ...+++.+.++ .++++.+|||||+||++|||||+.+|+++||||
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~-----~~~~~~~~~l~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDE 151 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE-----YSDEEIYGALR--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE 151 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC-----CCHHHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999999888899999975321 12333444444 246788999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
||++||+.+++.+.+.|+++. + |.|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 152 P~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 152 ATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999984 3 8999999999999875 999999999999887753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=440.52 Aligned_cols=217 Identities=27% Similarity=0.469 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..|+++||+++|+++ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 359999999999644 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
++|||+|.+|++|++|||.++. ..+++++.++++.+++.+. ...+.+..||||||||++|||||+
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~-----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL 1387 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFS-----EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL 1387 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCC-----CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998652 2456788889998887531 223446789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 286 (298)
++|+|||||||||+||+.+.+.+.+.|++..+ ++|+|+|+|+++.+.+ ||||+||++|+|++.|+++++.+..
T Consensus 1388 r~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFK--SCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999998753 7999999999999976 9999999999999999999987644
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=405.12 Aligned_cols=224 Identities=28% Similarity=0.449 Sum_probs=192.1
Q ss_pred CCeEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCCC
Q 022337 61 KPKFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDLD 132 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~~ 132 (298)
+++++++|+++.|++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...+
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 458999999999953 24799999999999999999999999999999999999987 7999999999987654
Q ss_pred HHH---Hh-cceEEEeCCCC--CCc-ccHHHHhHhCccc-cCCC--ccHHHHHHHHHHcCCCc--hhhcCCCCCCChhHH
Q 022337 133 VLS---LR-RKVGMLFQIPA--LFE-GTVVDNIRYGPQL-RGKK--LTENEVYKLLSLADLDS--SFLNKTGGEISVGQA 200 (298)
Q Consensus 133 ~~~---~~-~~ig~v~Q~~~--l~~-~tv~eni~~~~~~-~~~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqk 200 (298)
... .+ +++||+||++. +++ .++.+|+.+.... .+.. ...+++.++++.+++.+ ...++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 332 33 57999999985 555 4999998754221 1211 22456889999999963 246889999999999
Q ss_pred HHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChh
Q 022337 201 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280 (298)
Q Consensus 201 QRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~ 280 (298)
|||+|||||+.+|++|||||||++||+.+++.++++|++++++.|+|||+||||++.+..+||||++|++|++++.|+++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 242 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAA 242 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999997655899999999999999999999999999999999988
Q ss_pred hhhc
Q 022337 281 LLSE 284 (298)
Q Consensus 281 ~~~~ 284 (298)
++..
T Consensus 243 ~~~~ 246 (529)
T PRK15134 243 TLFS 246 (529)
T ss_pred HHhh
Confidence 7743
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=375.74 Aligned_cols=221 Identities=42% Similarity=0.666 Sum_probs=191.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 133 (298)
+++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 43 ~~~l~i~nl~~~~~-~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 43 DAKLSVEDLDVYYG-DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CceEEEEEEEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 45799999999995 4679999999999999999999999999999999999986 6899999999988542 33
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCcccc------------CCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCC
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR------------GKK---LTENEVYKLLSLADLDS---SFLNKTGGEI 195 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~------------~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~L 195 (298)
..+++.++|+||++.+|+.|++||+.++.... +.. ..++++.++++.+++.. +..++++.+|
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 201 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGL 201 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccC
Confidence 45677899999999988889999999764211 111 11345778889888842 3567889999
Q ss_pred ChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEE-EEEeCCEEE
Q 022337 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV-CLLVNGEIV 274 (298)
Q Consensus 196 SgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v-~vl~~G~i~ 274 (298)
||||||||+|||||+++|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++.+..+||++ ++|++|+++
T Consensus 202 SgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 99999999999999999999999999999999999999999999965 489999999999999999996 578999999
Q ss_pred EeeChhhhhc
Q 022337 275 EVLKPDLLSE 284 (298)
Q Consensus 275 ~~g~~~~~~~ 284 (298)
+.|+++++..
T Consensus 280 ~~g~~~~~~~ 289 (305)
T PRK14264 280 EYDDTDKIFE 289 (305)
T ss_pred EeCCHHHHHh
Confidence 9999988754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=363.42 Aligned_cols=210 Identities=30% Similarity=0.424 Sum_probs=182.6
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHHH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE---PPSGTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 136 (298)
.+.++|++++|.+. +++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~ 79 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQF 79 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHh
Confidence 46799999999654 579999999999999999999999999999999999999 99999999999874 2356
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCC---Cc--cHHHHHH-HHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK---KL--TENEVYK-LLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~---~~--~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++.++|+||++.+|+. |++||+.++...... .. ...++.+ .++.+++. ++.++.+.+|||||+||++|||||
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch-hhhcccccCcCHHHHHHHHHHHHH
Confidence 7789999999998885 999999976432211 11 1123445 78889986 567889999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH-HHHHhhcCEEEEEeCCEEEEee
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~-~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++ +.+..+||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998754 89999999998 5888999999999999998754
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=366.94 Aligned_cols=204 Identities=31% Similarity=0.502 Sum_probs=175.5
Q ss_pred EEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe-CCCCC
Q 022337 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF-QIPAL 149 (298)
Q Consensus 71 ~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~-Q~~~l 149 (298)
+.| +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++++++|++ |++.+
T Consensus 29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCcccc
Confidence 344 345799999999999999999999999999999999999999999999999986542 234567899998 55667
Q ss_pred Cc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCC
Q 022337 150 FE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226 (298)
Q Consensus 150 ~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD 226 (298)
++ .|++||+.+....++... ..+++.++++.++++ +..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 65 599999987543332211 234567889999996 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+.+++.+.+.|++++++.+.|||++||+++++..+||++++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999997655899999999999999999999999999998653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=400.48 Aligned_cols=215 Identities=27% Similarity=0.450 Sum_probs=189.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~i 140 (298)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ..+++++
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 5899999999995 5679999999999999999999999999999999999999999999999999865443 3456789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcc--ccC-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQ--LRG-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~--~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
||+||++.+++. |+.||+.++.. ..+ .. ...+++.++++.+++. ...++++.+|||||||||+|||||+.+|+
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNAR 160 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 999999988875 99999998642 111 11 1235678899999996 46788999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
+|||||||++||+.+++.+.+.|++++++ |+|||+||||++.+..+|||+++|++|+++..++.
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 161 VIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999754 89999999999999999999999999999876653
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=401.71 Aligned_cols=218 Identities=25% Similarity=0.470 Sum_probs=189.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHH-Hhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDVLS-LRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~~~~ 139 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+... .++.
T Consensus 1 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 478999999995 56799999999999999999999999999999999999987 7999999999987665433 3567
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcccc--C--CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLR--G--KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+||+||++.+++. |+.||+.++.... + .. ...+++.++++.+++.....++++.+|||||||||+|||||+.+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 9999999988874 9999999875321 1 11 12346788999999963223577999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|++|||||||+|||+.+++.+.+.|++++++ |.|||+||||++.+..+||++++|++|+++..++++++
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999754 89999999999999999999999999999998877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=400.00 Aligned_cols=200 Identities=35% Similarity=0.576 Sum_probs=179.2
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+|+|+++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||.++.+++..++|+++
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 369999999999754 3799999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||+|++.+|++|++||+.++.. ..+++++.++++.+++.+ ....+.+.+||||||||++|||||+
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARP----DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCC----CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999998632 234577888888888752 1233456789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
++|+++|||||||+||+.+++.+++.|.++.+ ++|+|+|||+++.+. .||+|++|
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQ--GRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcC--CCEEEEEecCHHHHH-hCCEEEeC
Confidence 99999999999999999999999999998853 899999999999885 69999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-52 Score=364.15 Aligned_cols=215 Identities=27% Similarity=0.525 Sum_probs=198.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++++|+|+| +++.|++|+||++++|++.|++|||||||||.+|+|+|++.|++|+|.|+|.++.. ..+.+|||
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGY 76 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhccc
Confidence 58999999999 57889999999999999999999999999999999999999999999999998753 34678999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCcc--HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLT--ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|.+..||+. ||.|.+.|.+.+++.+.. ..++..+|+++++. ....+++.+||.|++|++.+..|++++|+++|||
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 9999999985 999999998888877543 45688899999997 4688999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||||.+.+.+.+.+.+++++ |+|||++||.|+.++++||+++.|++|+.|..|+.+++..
T Consensus 156 EPFSGLDPVN~elLk~~I~~lk~~-GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCccCCChhhHHHHHHHHHHHHhc-CCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999765 9999999999999999999999999999999999988754
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=357.95 Aligned_cols=199 Identities=37% Similarity=0.526 Sum_probs=173.5
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHHhcceE
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSLRRKVG 141 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~~~~ig 141 (298)
++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++. ...++.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 468999995 5679999999999999999999999999999999999999999999999999654321 23467899
Q ss_pred EEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|++|++.+|+ .|++||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999887 59999999864322221 1245678899999996 578899999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
||||+|||+.+++.+.+.|+++.++ |.|+|++||+++.+ .+||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEeC
Confidence 9999999999999999999998764 89999999999976 589999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=401.68 Aligned_cols=187 Identities=38% Similarity=0.623 Sum_probs=168.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++||+|+|++++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.++ ..++|++|+
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~ 411 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRIS 411 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheE
Confidence 3599999999997656799999999999999999999999999999999999999999999999999999 889999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
||||+|.+|++|++|||.++.. ..+++++.++++.+++++. ...+.+..||||||||++|||||++
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRP----DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred EEccCcccccccHHHHHhccCC----CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999732 2456788899999888532 1223466899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
+|++||||||||+||+.+++.+.+.|.++.+ ++|+|+|||++
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~--~~TvIiItHrl 529 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALS--GKTVVVITHHL 529 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEecCC
Confidence 9999999999999999999999999998743 79999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=365.21 Aligned_cols=216 Identities=30% Similarity=0.489 Sum_probs=185.4
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
.+.++++|++++|++. +.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+++...+...+++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 4579999999999642 479999999999999999999999999999999999999999999999999877776677888
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHH---------Hc--CCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLS---------LA--DLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
++|+||++.+|+.|++||+..... ...+++.++++ .+ +++ ...++.+.+||+|||||++||||
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~l~-~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECK-----CTDDRLWEALEIAQLKNMVKSLPGGLD-AVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCC-----CCHHHHHHHHHHhCcHHHHhhcccccC-cEeccCCCcCCHHHHHHHHHHHH
Confidence 999999999888899999865321 11222333333 33 443 24456678999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
|+.+|++|||||||+|||+.+++.+++.++++. + +.|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus 171 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHhc
Confidence 999999999999999999999999999999874 3 8999999999999975 999999999999999999887654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=355.99 Aligned_cols=201 Identities=26% Similarity=0.409 Sum_probs=178.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++++++|
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 589999999995 567999999999999999999999999999999999999999999999999986543 345678999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
++|++.+++ .|+.||+.++...++. ...+++.++++.+|+. +..++++.+||||||||++|||||+++|+++|||||
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGP-GDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCc-cHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999998887 4999999886533221 2346788899999996 578899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
|++||+.+++.+.+.|++++++ |.|||++|||++++..+.+|++++
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAEQ-GGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHHC-CCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999998754 899999999999998877888776
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=365.63 Aligned_cols=202 Identities=35% Similarity=0.561 Sum_probs=184.7
Q ss_pred CCeEEEEeEEEEeCCC--------CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q 022337 61 KPKFRVRELRKESDDG--------APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~--------~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~ 132 (298)
.++++++|++++|.-+ ..+++||||+|++||++||||+||||||||-|+|+||++|++|+|+++|+++..++
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS 81 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc
Confidence 3579999999999532 26999999999999999999999999999999999999999999999999976543
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
.....+++.++|+.+|+.++..+++|++|||||+||++|||||+.+
T Consensus 82 ----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 82 ----------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred ----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 1223567999999999988889999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh-ccCChHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMAL 291 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~-~~~~~~~~ 291 (298)
|+++++|||+|+||...+.++.++|.++.++.|.|.++||||++.+..+||||.||..|+|++.|+.+++. ++.|+|++
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk 207 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTK 207 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999998875 56788988
Q ss_pred HHhhh
Q 022337 292 RFLQL 296 (298)
Q Consensus 292 ~~~~~ 296 (298)
.++..
T Consensus 208 ~Ll~a 212 (268)
T COG4608 208 ALLSA 212 (268)
T ss_pred HHHHh
Confidence 87664
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=401.11 Aligned_cols=224 Identities=31% Similarity=0.525 Sum_probs=190.5
Q ss_pred CCCeEEEEeEEEEeCC----CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC-CEe---CCCC
Q 022337 60 QKPKFRVRELRKESDD----GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD-GRD---ITDL 131 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~----~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~-g~~---i~~~ 131 (298)
..++++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ +...
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 3568999999999942 2469999999999999999999999999999999999999999999996 643 3222
Q ss_pred C---HHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCC-CccHHHHHHHHHHcCCCc----hhhcCCCCCCChhHHHH
Q 022337 132 D---VLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK-KLTENEVYKLLSLADLDS----SFLNKTGGEISVGQAQR 202 (298)
Q Consensus 132 ~---~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~-~~~~~~~~~~l~~~~l~~----~~~~~~~~~LSgGqkQR 202 (298)
+ ...+++++||+||++.+++. ||.||+.++...... ...++++.++++.+++.. ++.++++.+||||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 2 12345679999999988874 999999865321111 112346788999999963 25789999999999999
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|+|||||+.+|++|||||||+|||+.+++.+++.|++++++.|.|||+||||++.+..+|||+++|++|++++.|+++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999766689999999999999999999999999999999988765
Q ss_pred h
Q 022337 283 S 283 (298)
Q Consensus 283 ~ 283 (298)
.
T Consensus 516 ~ 516 (520)
T TIGR03269 516 V 516 (520)
T ss_pred H
Confidence 4
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=356.87 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=180.0
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
+++++++|++++|+ ++.+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..++.+
T Consensus 9 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 9 PPLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred cceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 46899999999995 56799999999999999999999999999999999999999999999999988642 335679
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|++|++.+++. |++||+.+....++. ..++.+.++++.+++. +..++++.+||||||||++||||++.+|++||||
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~-~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGR-RAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD 162 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCC-cHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999988875 999999875433222 2345577889999996 5678999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
|||++||+.+++.+.+.|+++.++ |.|+|++|||++++.++||++++++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 163 EPYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999998764 89999999999999999999999863
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=401.12 Aligned_cols=222 Identities=21% Similarity=0.347 Sum_probs=191.3
Q ss_pred CCeEEEEeEEEEeC--CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCccEEEECCEeCCCCCH-HHH
Q 022337 61 KPKFRVRELRKESD--DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPSGTVFLDGRDITDLDV-LSL 136 (298)
Q Consensus 61 ~~~l~~~~l~~~y~--~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p~~G~I~i~g~~i~~~~~-~~~ 136 (298)
.++++++|+++.|+ +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+. ...
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 45899999999984 23579999999999999999999999999999999999999 599999999999864433 334
Q ss_pred hcceEEEeCCC---CCCc-ccHHHHhHhCcc--ccC---CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 137 RRKVGMLFQIP---ALFE-GTVVDNIRYGPQ--LRG---KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 137 ~~~ig~v~Q~~---~l~~-~tv~eni~~~~~--~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
++.++|+||++ .+++ .|+.||+.++.. ... .. ...+++.++++.+++..+..++++.+|||||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 66799999996 3665 599999987631 111 11 1234578899999995335789999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||||+.+|++|||||||+|||+.+++.++++|.+++++ |+|||++|||++++.++|||+++|++|+++..++++++.
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999999999999999999999999999765 999999999999999999999999999999999887763
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=362.74 Aligned_cols=197 Identities=36% Similarity=0.534 Sum_probs=173.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHh
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNI 158 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni 158 (298)
|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..+|+||++.+++ .|+.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999865432 2489999999887 5999999
Q ss_pred HhCcc--ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHH
Q 022337 159 RYGPQ--LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234 (298)
Q Consensus 159 ~~~~~--~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~ 234 (298)
.++.. ..... ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 87532 11111 1234578899999996 5788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 235 ~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+.|.+++++.|+|||++|||++.+..+||++++|++|++++.|++.++
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999998765589999999999999999999999999999988876544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=364.96 Aligned_cols=212 Identities=26% Similarity=0.386 Sum_probs=184.9
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF 144 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~ 144 (298)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|+++...+...+++.++|+|
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEec
Confidence 57788874 27999999999999999999999999999999999985 5999999999987766666677899999
Q ss_pred CCCCCCc-ccHHHHhHhCccccCC-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC-------CCCe
Q 022337 145 QIPALFE-GTVVDNIRYGPQLRGK-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN-------EPEV 215 (298)
Q Consensus 145 Q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~-------~p~i 215 (298)
|++.+++ .|+++|+.++...... ....+++.++++.+++. +..++++.+||||||||++|||||+. +|++
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l 154 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLD-DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL 154 (248)
T ss_pred ccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE
Confidence 9987654 6999999986422111 11245678899999996 57789999999999999999999997 6799
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+.++|++++++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 155 lllDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 155 LLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999999999999999998754 8999999999999999999999999999999999887643
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=399.11 Aligned_cols=212 Identities=23% Similarity=0.307 Sum_probs=188.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.+||
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 699999999995 5579999999999999999999999999999999999999999999999988765555555677999
Q ss_pred EeCCCCC--C-------cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 143 LFQIPAL--F-------EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 143 v~Q~~~l--~-------~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+||++.+ + ..|+++|+.++. ..++++.++++.+++. ++.++++.+|||||||||+|||||+.+|
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV------KDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEP 154 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch------hHHHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9998753 1 348888875431 2345688999999996 5789999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
++|||||||+|||+.+++.+.+.|++++++ |+|||++|||++.+.++||++++|++|+++..|+++++.
T Consensus 155 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 155 DLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999765 899999999999999999999999999999999887754
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-50 Score=435.69 Aligned_cols=217 Identities=29% Similarity=0.445 Sum_probs=195.3
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..|+++||+++|+++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 459999999999654 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
++|||+|.+|++|+++||... + ..+++++.++++.+++.+. .....+..||||||||++|||||+
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp~----~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALL 1437 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDPF----S-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALL 1437 (1522)
T ss_pred eEECCCCcccCccHHHHcCcc----c-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999732 1 2456778889998887521 223445789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 286 (298)
++|+|||||||||+||+.+.+.+.+.|++..+ ++|+|+|+|+++.+.. ||||+||++|+|++.|+++++.+..
T Consensus 1438 r~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~--~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~~ 1510 (1522)
T TIGR00957 1438 RKTKILVLDEATAAVDLETDNLIQSTIRTQFE--DCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQR 1510 (1522)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999998754 7999999999999976 8999999999999999999987643
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=398.90 Aligned_cols=214 Identities=25% Similarity=0.429 Sum_probs=188.2
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcceEEEe
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRKVGMLF 144 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ig~v~ 144 (298)
++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++.++|+|
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368999995 56799999999999999999999999999999999999999999999999998655433 3467899999
Q ss_pred CCCCCCc-ccHHHHhHhCcc-ccCC--Cc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 145 QIPALFE-GTVVDNIRYGPQ-LRGK--KL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 145 Q~~~l~~-~tv~eni~~~~~-~~~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|++.+++ .||+||+.++.. ..+. .. ..+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9998776 599999997642 1111 11 134578899999996 467889999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||||+|||+.+++.+.+.|++++++ |.|||++|||++++..+||++++|++|++++.++++++
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999998754 89999999999999999999999999999999987765
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=363.85 Aligned_cols=204 Identities=27% Similarity=0.424 Sum_probs=181.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +..++
T Consensus 3 ~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 3 SLVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred cEEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4799999999995 56799999999999999999999999999999999999999999999986 23699
Q ss_pred EEeCCCCCCc---ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFE---GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|+||++.+++ .|+.+|+.+.. ....+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 144 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRP-----GTKKEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144 (251)
T ss_pred EeccccccccccChhHHHHHhccc-----cccHHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987764 37888876532 11345678899999996 578899999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||+|||+.++..+++.|+++.++.|.|||++|||++.+..+||++++|++ ++++.|+++++..
T Consensus 145 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 9999999999999999999998765589999999999999999999999965 7999999887643
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=359.68 Aligned_cols=204 Identities=29% Similarity=0.418 Sum_probs=177.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC----CccEEEECCEeCCCCCHHHHhcceEEEeCCCC--CCc-
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP----PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA--LFE- 151 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p----~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~--l~~- 151 (298)
+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... ...++.++|++|++. +++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999988543 222357999999985 444
Q ss_pred ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCc--hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCH
Q 022337 152 GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDS--SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227 (298)
Q Consensus 152 ~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~ 227 (298)
.|+.+|+.+.....+.. ...+++.++++.+++++ +..++.+.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 49999987653222211 12356888999999962 467889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 228 ~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.++..+.+.|++++++.|+|||++||+++.+..+||++++|++|++++.|+++++..
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999976558999999999999999999999999999999999988754
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=361.55 Aligned_cols=218 Identities=26% Similarity=0.381 Sum_probs=182.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHHh-cc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLDGRDITDLDVLSLR-RK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~g~~i~~~~~~~~~-~~ 139 (298)
|++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+....+ +.
T Consensus 1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 589999999995 567999999999999999999999999999999999995 69999999999988766554443 57
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcc---cc-CC---C--ccHHHHHHHHHHcCCCchhhcCCCC-CCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQ---LR-GK---K--LTENEVYKLLSLADLDSSFLNKTGG-EISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~---~~-~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkQRv~iAra 208 (298)
++|++|++.+++. +..+++.+... .. .. . ...+.+.+.++.+++++.+.++.+. +|||||||||+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 9999999987764 66665543211 00 00 0 0134567788999996446667775 799999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEEEeeChhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|+++|++|||||||++||+.+++.+.+.|+++++ .|+|||++|||++.+..+ ||++++|++|++++.|+++..
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999865 489999999999999887 899999999999999987744
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=345.25 Aligned_cols=172 Identities=39% Similarity=0.612 Sum_probs=159.8
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|++++|+++ .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999642 469999999999999999999999999999999999999999999999999877776677788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
++|++.+|+.|++||+ ||||||||++|||||+.+|++|||||||
T Consensus 81 ~~q~~~~~~~tv~~~l------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 81 LPQDDELFSGSIAENI------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred ECCCCccccCcHHHHC------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 9999988888999997 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
++||+.++..+++.|++++++ |+|+|++|||++.+ .+||++++|++|++
T Consensus 125 ~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 125 SHLDVEGERALNQAIAALKAA-GATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred cccCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 999999999999999998754 89999999999988 57999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=357.55 Aligned_cols=205 Identities=26% Similarity=0.423 Sum_probs=174.5
Q ss_pred eEEEEeEEEEeCC------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC--CE--eCCCCC
Q 022337 63 KFRVRELRKESDD------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD--GR--DITDLD 132 (298)
Q Consensus 63 ~l~~~~l~~~y~~------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~--g~--~i~~~~ 132 (298)
|++++|++++|++ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5899999999952 1369999999999999999999999999999999999999999999998 43 554444
Q ss_pred HHH---H-hcceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 133 VLS---L-RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 133 ~~~---~-~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
... + ++.++|+||++.+++. |+.||+.+.....+.. ...+++.++++.+++.+.+.++++.+||||||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 332 2 4579999999988874 9999998753322221 1235678899999996435578899999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
||||+.+|++|||||||++||+.+++.+.+.|++++++ |+|||++||+++.+..+||+++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999998654 899999999999999999999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=432.36 Aligned_cols=215 Identities=29% Similarity=0.470 Sum_probs=194.5
Q ss_pred eEEEEeEEEEeCCCC-cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~-~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.|+++||+++|+++. ++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+++..++|++||
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 599999999997554 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
||||+|.+|++||++||.... ..+++++.++++.+++++. .....+..||||||||++|||||++
T Consensus 1388 iVpQdp~LF~gTIreNIdp~~-----~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1388 MIPQDPVLFDGTVRQNVDPFL-----EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred EECCCCccccccHHHHhCccc-----CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999996431 2456889999999988532 1223457899999999999999999
Q ss_pred C-CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 E-PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~-p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+ |+|||||||||+||+.+.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|+||++|+|++.|+++++...
T Consensus 1463 ~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1463 KGSGFILMDEATANIDPALDRQIQATVMSAFS--AYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC--CCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 6 899999999999999999999999998754 7999999999999965 999999999999999999998753
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=400.32 Aligned_cols=218 Identities=33% Similarity=0.540 Sum_probs=186.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEEC-----------------
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLD----------------- 124 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~----------------- 124 (298)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 47899999995 567999999999999999999999999999999999997 7999999997
Q ss_pred ------CEeCC-------CCCH---HHHhcceEEEeCC-CCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCC
Q 022337 125 ------GRDIT-------DLDV---LSLRRKVGMLFQI-PALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLD 184 (298)
Q Consensus 125 ------g~~i~-------~~~~---~~~~~~ig~v~Q~-~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~ 184 (298)
|.++. ..+. ..+++.++|+||+ +.+++ .|++||+.++....+.. ..++++.++++.+|++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 33221 1111 2346679999998 56776 59999999864332322 1235688899999996
Q ss_pred chhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 185 ~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
++.++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+++.|++++++.|+|||+||||++.+..+||+
T Consensus 160 -~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 160 -HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred -hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 5788999999999999999999999999999999999999999999999999999765689999999999999999999
Q ss_pred EEEEeCCEEEEeeChhhhh
Q 022337 265 VCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 265 v~vl~~G~i~~~g~~~~~~ 283 (298)
+++|++|+++..|+++++.
T Consensus 239 i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 239 AIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EEEEeCCEEeeecCHHHHH
Confidence 9999999999988887653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=395.83 Aligned_cols=206 Identities=30% Similarity=0.407 Sum_probs=182.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++|+|+++.++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+...+|++++
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 36999999999975557999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcC-----CCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK-----TGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
|++|++.+|+.|+++| + ...+++++.++++.+++.. ..+. .+.+||||||||++||||++++|++|
T Consensus 401 ~v~q~~~lf~~ti~~n---~-----~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~il 471 (547)
T PRK10522 401 AVFTDFHLFDQLLGPE---G-----KPANPALVEKWLERLKMAH-KLELEDGRISNLKLSKGQKKRLALLLALAEERDIL 471 (547)
T ss_pred EEecChhHHHHhhccc---c-----CchHHHHHHHHHHHcCCch-hhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999988 2 1234567888999998863 2221 14689999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
|||||||+||+.+++.+.+.+.+..++.++|+|+|||+++.+. .||+|++|++|++++..
T Consensus 472 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 472 LLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELT 531 (547)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEec
Confidence 9999999999999999999998765434899999999998764 69999999999999764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=345.51 Aligned_cols=212 Identities=34% Similarity=0.565 Sum_probs=191.4
Q ss_pred CeEEEEeEEEEeCCCCc--ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDGAP--ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~--vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
+++.+++++..|. +++ +|+|+|++|.+||+++++|||||||||||++++|+.+|+.|+|.+||+.|..-. ..
T Consensus 2 ~~l~~~~~sl~y~-g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----ae 75 (259)
T COG4525 2 CMLNVSHLSLSYE-GKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AE 75 (259)
T ss_pred ceeehhheEEecC-CcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----cc
Confidence 4688899999995 455 999999999999999999999999999999999999999999999999987533 23
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
-|.|||++.++|. ++.||++|++...+... ..+.+.+.+..+|+. +..++++-+|||||||||.|||||+.+|++|
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~-~~~~~~i~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE-GAEHKYIWQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc-cccccceEeecchHHHHHHHHHHhhcCcceE
Confidence 4999999999985 99999999998877643 345678899999997 5779999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEeeChh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPD 280 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~g~~~ 280 (298)
+||||+++||.-+++++.++|.++.++.|+.+++||||++++.-+|+|++||+. |+|++.-+++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999888899999999999999999999999984 7998765543
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=343.93 Aligned_cols=172 Identities=40% Similarity=0.696 Sum_probs=159.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ +.++|+++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYG-KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEE
Confidence 46899999995 457999999999999999999999999999999999999999999999999986554 4567789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
||++.+++. |+.||+. |||||+||++|||||+.+|+++||||||
T Consensus 79 ~q~~~~~~~~tv~~~~~-----------------------------------LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 79 PEEPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred ecCCccccCCcHHHHhh-----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 999988875 9999974 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
++||+.+++.+.+.|+++.++ |.|+|++|||++.+..+||++++|++|++
T Consensus 124 ~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 124 SGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999765 89999999999999999999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=345.52 Aligned_cols=175 Identities=48% Similarity=0.802 Sum_probs=161.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC--HHHHhcceE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD--VLSLRRKVG 141 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~--~~~~~~~ig 141 (298)
++++|++++|+ ++++++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ...+++.++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 47899999995 567999999999999999999999999999999999999999999999999987654 445678899
Q ss_pred EEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
|++|++.+++ .|++||+.+. ||||||||++|||||+.+|+++||||
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr~~la~al~~~p~llilDE 126 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126 (178)
T ss_pred EEecCCccCCCCCHHHheeec---------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 9999998886 4999998653 99999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
||+|||+.++..+.+.|++++++.|.|+|++|||++.+..+||++++|++|+
T Consensus 127 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 127 PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999976547999999999999998999999999984
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-50 Score=372.23 Aligned_cols=236 Identities=33% Similarity=0.474 Sum_probs=211.3
Q ss_pred CCCeEEEEeEEEEeCCC----------CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 60 QKPKFRVRELRKESDDG----------APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~----------~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
..+.++.+++...|+-+ ..+++++||++++||.+||||+||||||||-..|.+|++++ |+|.++|+++.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 45679999999888421 24899999999999999999999999999999999999876 99999999998
Q ss_pred CCCHH---HHhcceEEEeCCCC--CCc-ccHHHHhHhCccccCCC----ccHHHHHHHHHHcCCCchhhcCCCCCCChhH
Q 022337 130 DLDVL---SLRRKVGMLFQIPA--LFE-GTVVDNIRYGPQLRGKK----LTENEVYKLLSLADLDSSFLNKTGGEISVGQ 199 (298)
Q Consensus 130 ~~~~~---~~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 199 (298)
.++.+ .+|+++-.|||||+ |-| +||.+-|.-|+..+... +.++++.++|+.+|++..-+++||+++||||
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 87755 45789999999996 556 59999999998766532 2346789999999999888999999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 200 kQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
|||+|||||++.+|++++||||||+||..-+.++.++|+++.+++|.+-+|||||+..+..+||+|+||++|+|+|.|+.
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~ 511 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPT 511 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc-cCChHHHHHhhh
Q 022337 280 DLLSE-AKHPMALRFLQL 296 (298)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~ 296 (298)
+++.+ +.++|.+.+..+
T Consensus 512 ~~if~~P~~~YT~~L~~a 529 (534)
T COG4172 512 EAVFANPQHEYTRALLAA 529 (534)
T ss_pred HHHhcCCCcHHHHHHHHh
Confidence 98764 577888887654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=398.03 Aligned_cols=215 Identities=23% Similarity=0.420 Sum_probs=186.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~ 139 (298)
.++++++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ...+++
T Consensus 263 ~~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 263 ETVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred CcEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 45899999998762 38999999999999999999999999999999999999999999999999865443 345678
Q ss_pred eEEEeCCC---CCCc-ccHHHHhHhCcccc--------CC-C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHH
Q 022337 140 VGMLFQIP---ALFE-GTVVDNIRYGPQLR--------GK-K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 140 ig~v~Q~~---~l~~-~tv~eni~~~~~~~--------~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~ 204 (298)
+||+||++ .+++ .|++||+.++...+ +. . ...+++.++++.+++..+..++++.+|||||||||+
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 419 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL 419 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH
Confidence 99999984 5776 49999998763211 10 1 122457789999999524678999999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
|||||+.+|++|||||||+|||+.+++.++++|++++++ |.|||++|||++.+..+|||+++|++|++++.++.
T Consensus 420 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999999999999999999999999999764 89999999999999999999999999999988765
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=351.48 Aligned_cols=197 Identities=29% Similarity=0.438 Sum_probs=176.4
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|+++.|+ ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++|+
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEe
Confidence 47899999995 567999999999999999999999999999999999999999999999999875433 3567789999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+|++.+++ .|++||+.+.... ..++++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHAD----HSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred ccccccCCCcCHHHHHHhhccc----ccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99998876 5999999875321 1356788899999996 5678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
++||+.+++.+.+.|++++++ |.|+|++|||......+|++++++
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCAR-GGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchhhhhccceeEec
Confidence 999999999999999998754 899999999999888999999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=345.50 Aligned_cols=177 Identities=33% Similarity=0.563 Sum_probs=161.5
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 4789999999643 3699999999999999999999999999999999999999999999999987544 3456778999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+||++.+++.|++||+ +.+||||||||++||||++.+|++|||||||
T Consensus 80 ~~q~~~~~~~tv~~~i---------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 80 LNQRPYLFDTTLRNNL---------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred EccCCeeecccHHHhh---------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 9999988888999987 5689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
++||+.+++.+++.|.++. + +.|+|++||+++.+. .||++++|++|++++.|
T Consensus 127 ~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 127 VGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 9999999999999999984 3 899999999999986 69999999999998653
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-50 Score=387.27 Aligned_cols=219 Identities=29% Similarity=0.485 Sum_probs=195.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~ 139 (298)
.+.++++|++|+|+ +.++|+++||++.+||++||+|+||||||||+|+|+|.++|++|+|+++|+.+...++.+ ....
T Consensus 6 ~~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 6 PPLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred cceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 45799999999995 679999999999999999999999999999999999999999999999999997666654 4567
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccC---C-C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRG---K-K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~---~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|+.|+|+.+|+|. ||.|||.++..... . + .-.+++.++++.+++..+ .+.++.+||.||||.|+||||+..+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 9999999999985 99999998865332 1 1 123567889999998533 7889999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC-hhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLL 282 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~-~~~~ 282 (298)
+++||||||||+|+....+.+++.+++++++ |.+||+|||+++++.++||||.||+||+.+...+ ..++
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence 9999999999999999999999999999764 9999999999999999999999999999998887 3544
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=342.87 Aligned_cols=210 Identities=35% Similarity=0.531 Sum_probs=194.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++++.+.- ++.++|+++||++.+||+++|+||||||||||+|+++-|..|++|.+++.|++++.+.++.+|..|+|+
T Consensus 4 le~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 4 LELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred hHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 4556665544 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC
Q 022337 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS 223 (298)
Q Consensus 144 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts 223 (298)
.|.|.||+.||+||+.|+...+....+...+.+.++++++++.++++.+.+||||||||++|+|-|..-|+|||||||||
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 99999999999999999977666555677888999999999888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE
Q 022337 224 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 224 ~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~ 274 (298)
+||+.+++.+-++|.++.+++..+++.||||.+.+.+.+|+++-+..|++-
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 999999999999999998777999999999999988999999999999763
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-50 Score=344.52 Aligned_cols=176 Identities=31% Similarity=0.505 Sum_probs=160.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~ 139 (298)
+++++++|++++| +|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...+++
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 3579999999988 8999999999999999999999999999999999999999999999999876653 345678
Q ss_pred eEEEeCCC---CCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIP---ALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~---~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++|+||++ .+++ .|++||+.++.. ||||||||++|||||+.+|++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qrl~la~al~~~p~l 125 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQKVVLARWLARDPRV 125 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHHHHHHHHHccCCCE
Confidence 99999995 3565 599999976421 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
|||||||++||+.+++.+.+.|+++.++ |.|+|++||+++++.++||++++|++|++
T Consensus 126 lllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 126 LILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999998754 89999999999999999999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-50 Score=345.30 Aligned_cols=179 Identities=42% Similarity=0.652 Sum_probs=164.5
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF 144 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~ 144 (298)
+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|+|
T Consensus 1 ~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYG-GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEEC-CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 4789999995 467999999999999999999999999999999999999999999999999997766666677899999
Q ss_pred CCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCC
Q 022337 145 QIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224 (298)
Q Consensus 145 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~ 224 (298)
| +++.+++. +..++.+.+||||||||++|||||+.+|+++||||||++
T Consensus 80 q-------------------------------~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 80 Q-------------------------------ALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred H-------------------------------HHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 8 67778886 467888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
||+.+++.+.+.|.+++++.+.|+|++||+++.+.++||++++|++|++++.
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999998764478999999999999999999999999999764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=349.18 Aligned_cols=192 Identities=22% Similarity=0.293 Sum_probs=167.3
Q ss_pred eEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHHH
Q 022337 63 KFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE---PPSGTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 136 (298)
.+.++|++|.|+. ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 5789999999963 3579999999999999999999999999999999999999 89999999999987543 345
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++.++|+||++.+++. ||+||+.++.... .++++.+||||||||++|||||+.+|++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc----------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 6789999999988874 9999998753210 3457789999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM-VSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~-itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
|||||||++||+.+++.+++.|++++++.+.|+|+ ++|+.+.+.++||++++|++|++++.|
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999997654566555 566678888999999999999998653
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-50 Score=393.57 Aligned_cols=221 Identities=21% Similarity=0.310 Sum_probs=189.5
Q ss_pred CCeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECCEeCCCCCH-HHH
Q 022337 61 KPKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDGRDITDLDV-LSL 136 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g~~i~~~~~-~~~ 136 (298)
.++++++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+. ..+
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 458999999998842 35799999999999999999999999999999999999996 89999999999864433 345
Q ss_pred hcceEEEeCCC---CCCc-ccHHHHhHhCcc--cc---CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 137 RRKVGMLFQIP---ALFE-GTVVDNIRYGPQ--LR---GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 137 ~~~ig~v~Q~~---~l~~-~tv~eni~~~~~--~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
++++||+||++ .+++ .|+++|+.++.. .. ... ..++++.++++.+++.....++++.+|||||||||+|
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 77899999996 4676 599999987531 11 111 1234578899999995335788999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||||+.+|++|||||||+|||+.+++.++++|.+++++ |.|||++|||++++.++|||+++|++|+++...+.+++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999999999999765 89999999999999999999999999999988765543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=346.01 Aligned_cols=182 Identities=34% Similarity=0.505 Sum_probs=164.3
Q ss_pred eEEEEeEEEEeCC-----CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHH
Q 022337 63 KFRVRELRKESDD-----GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~-----~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~g~~i~~~~~~~ 135 (298)
.++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 5899999999964 267999999999999999999999999999999999999 9999999999998864 24
Q ss_pred HhcceEEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 136 LRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+++.++|+||++.+++ .|++||+.++... .+||||||||++|||||+.+|+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~----------------------------~~LS~G~~qrv~laral~~~p~ 131 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL----------------------------RGLSGGERKRVSIALELVSNPS 131 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh----------------------------ccCCHHHHHHHHHHHHHHcCCC
Confidence 5678999999998887 4999999754210 0899999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeCCEEEEe
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~G~i~~~ 276 (298)
++||||||++||+.+++.+.+.|+++.++ |+|+|++|||++ .+..+||++++|++|++++.
T Consensus 132 illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 132 LLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999998754 899999999996 68889999999999999764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-49 Score=424.76 Aligned_cols=208 Identities=28% Similarity=0.532 Sum_probs=182.6
Q ss_pred eEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE-CCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL-DGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i-~g~~i~~~~~~~~~~~ 139 (298)
.|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++..++...+|++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 59999999999643 36999999999999999999999999999999999999999999999 5789888888888999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCcccc-C----------------------------------------------------
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLR-G---------------------------------------------------- 166 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~-~---------------------------------------------------- 166 (298)
||||+|++.+|+.|++|||.++.... .
T Consensus 462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 99999999999999999999974210 0
Q ss_pred CCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHH
Q 022337 167 KKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236 (298)
Q Consensus 167 ~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~ 236 (298)
....++++.++++.+++++. ..++.+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~ 621 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 01234678888888888532 12456789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 237 l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
|+++.++.|+|+|+|||+++.+ +.||+|++|++|
T Consensus 622 L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 622 INNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 9998754589999999999998 579999999986
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=390.03 Aligned_cols=206 Identities=24% Similarity=0.370 Sum_probs=181.1
Q ss_pred CeEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 62 PKFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
..++++||+|+|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..++|
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 359999999999642 2599999999999999999999999999999999999999999999999999998888899
Q ss_pred cceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCC------CCCCChhHHHHHHHHHHHcC
Q 022337 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKT------GGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LSgGqkQRv~iAral~~ 211 (298)
+.++||+|++.+|+.|+++|.. ...+++++.++++.+++++ ..++. ...||||||||++||||+++
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~~-------~~~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~LSgGq~qRlalaRall~ 487 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDEG-------EHASLDNAQQYLQRLEIAD-KVKIEDGGFSTTTALSTGQQKRLALICAWLE 487 (555)
T ss_pred hhCcEEccChhhhhhhhhcccc-------cchhHHHHHHHHHHcCCch-hhcccccccCCcccCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999941 1234667889999999964 33332 35799999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHH-HHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLV-KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~-~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+|++|||||||++||+.+++.+.+.+. .+.. .|+|+|+|||+++.+ ..||+|++|++|++++.-
T Consensus 488 ~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 488 DRPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDT 552 (555)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHH-HhCCEEEEEECCEEEEec
Confidence 999999999999999999999998765 3433 489999999999877 579999999999998753
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-50 Score=332.01 Aligned_cols=227 Identities=34% Similarity=0.506 Sum_probs=199.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC--CCCC----HHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI--TDLD----VLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i--~~~~----~~~~ 136 (298)
.|+++|+++.| +..++|-||+|+.++||.+.++||||||||||+|.|.-+.-|.+|+..|.|... ...+ ..++
T Consensus 2 sirv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 37899999999 467899999999999999999999999999999999999999999999988643 2222 2367
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCc-cccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGP-QLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~-~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|+++|+|||..+++|. ||.||+.-.+ +..+.+. ...++.++++++.+. ++.|+.|-.|||||+|||+|||||+.+
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-~~adr~plhlsggqqqrvaiaralmmk 159 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc-cccccCceecccchhhhHHHHHHHhcC
Confidence 8999999999999995 9999998653 3334332 345678899999997 589999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 292 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~ 292 (298)
|++|++||||++|||+-..++.++++++.. .|.|=++|||..+.+.+.|.||+.|++|+|++.|+.+-+.++.......
T Consensus 160 pqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~p~te~f~~ 238 (242)
T COG4161 160 PQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKN 238 (242)
T ss_pred CcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccCccHHHHHH
Confidence 999999999999999999999999999976 4999999999999999999999999999999999998887665443333
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=346.34 Aligned_cols=196 Identities=24% Similarity=0.401 Sum_probs=171.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEe
Confidence 47899999995 568999999999999999999999999999999999999999999999999986654 3456789999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+|++.+++ .|+.||+.+.....+ ..++++.++++.+++. +..++++.+||||||||++||||++.+|+++||||||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHG--GAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcC--CcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99988887 599999987543222 1234678899999996 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
++||+.+++.+.+.|.+++++ |.|+|++||+...+ .|++++.
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 156 TALDKAGVALLAGLLRAHLAR-GGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred cCCCHHHHHHHHHHHHHHHhC-CCEEEEEEcccccc--cceEEee
Confidence 999999999999999998654 89999999998655 4787764
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=343.80 Aligned_cols=182 Identities=29% Similarity=0.409 Sum_probs=162.8
Q ss_pred eEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHHh
Q 022337 63 KFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 63 ~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
.++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 5899999999964 257999999999999999999999999999999999986 489999999999874 3456
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++++|++|++.+++. |++||+.++.. ++ +||||||||++|||||+.+|++|
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~--------------~~--------------~LSgGe~qrv~la~al~~~p~vl 130 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL--------------LR--------------GLSVEQRKRLTIGVELAAKPSIL 130 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH--------------Hh--------------cCCHHHhHHHHHHHHHhcCCcEE
Confidence 789999999988875 99999986421 00 89999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeC-CEEEEee
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVN-GEIVEVL 277 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~-G~i~~~g 277 (298)
||||||++||+.+++.+++.|++++++ |+|+|++||+++ .+..+||++++|++ |++++.|
T Consensus 131 llDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 131 FLDEPTSGLDSQAAYNIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999998754 899999999998 47789999999999 9998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=347.17 Aligned_cols=198 Identities=28% Similarity=0.384 Sum_probs=174.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ..++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~--~~~~~~~~ 77 (207)
T PRK13539 2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P--DVAEACHY 77 (207)
T ss_pred EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h--hhHhhcEE
Confidence 689999999995 4679999999999999999999999999999999999999999999999998642 1 26778999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
++|++.+++ .|+.||+.+.....+ ...+++.++++.+|+. +..++++.+||||||||++|||||+.+|++||||||
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 154 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLG--GEELDIAAALEAVGLA-PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcC--CcHHHHHHHHHHcCCH-HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999888765 599999987543322 2245688999999996 467889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
|+|||+.+++.+++.|++++++ |.|||++||+++++.. |+++.++.
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 155 TAALDAAAVALFAELIRAHLAQ-GGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred cccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999999999999998664 8999999999999875 99887744
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-50 Score=377.92 Aligned_cols=218 Identities=34% Similarity=0.572 Sum_probs=197.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
...++++||+|.|..++++|+||||++.+|+.+||+||||+||||++|+|.++++.++|.|.|||+||+......+|+.|
T Consensus 535 ~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred CCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 44699999999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
|.||||..+|+.|+..||.|+.. ....+++.++.+..++++ ....+++-.|||||||||||||+++
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKP----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred CcccCcceeecceeeeheeecCC----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 99999999999999999998742 345567777776666642 2344567789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|.+++|||.||+||..+++.+...|.++++ +.|.|+|.|+++.+-. ||.|+++++|+|+|.|.++++...
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHhc
Confidence 99999999999999999999999999999986 7899999999999965 999999999999999999998653
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=343.78 Aligned_cols=185 Identities=31% Similarity=0.526 Sum_probs=164.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHH-hcce
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDVLSL-RRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-~~~i 140 (298)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... +..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 47899999995 56799999999999999999999999999999999999 58999999999999977654433 4569
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|+||++.+++. ++.+++ +..+.+|||||+||++|||||+.+|+++|||
T Consensus 80 ~~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qrv~laral~~~p~illlD 129 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILD 129 (200)
T ss_pred EEeecChhhccCccHHHHH------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999988875 666665 1123589999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh-hcCEEEEEeCCEEEEeeChh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR-IADVVCLLVNGEIVEVLKPD 280 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~-~~d~v~vl~~G~i~~~g~~~ 280 (298)
|||++||+.++..+.+.|++++++ ++|+|++||+++.+.. +||++++|++|++++.|+.+
T Consensus 130 EPt~~LD~~~~~~l~~~L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 130 EPDSGLDIDALRLVAEVINKLREE-GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 999999999999999999998754 8999999999999987 79999999999999998543
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=345.30 Aligned_cols=196 Identities=25% Similarity=0.416 Sum_probs=172.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus 1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 589999999995 5679999999999999999999999999999999999999999999999998864 33456788999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
++|++.+++ .|++||+.++.... ....++.++++.+++. +..++++.+||||||||++||||++.+|++||||||
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP 154 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFS---PGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP 154 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcC---cchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999998876 59999999864221 1235688899999996 467888999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEE
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~ 266 (298)
|++||+.+++.+.+.|++++++ |.|+|++||+.+.+.. ||.-.
T Consensus 155 ~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 155 LVALDELSLLTIITKIQEHRAK-GGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred CcccCHHHHHHHHHHHHHHHHc-CCEEEEEeCCchhccc-cchhh
Confidence 9999999999999999998654 8999999999998855 88754
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=336.90 Aligned_cols=170 Identities=43% Similarity=0.713 Sum_probs=157.4
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|++++|+++ ..+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999643 279999999999999999999999999999999999999999999999999876666667788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+||++.+|+.|+.||+ ||||||||++|||||+.+|++|||||||
T Consensus 81 ~~~~~~~~~~t~~e~l------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~ 124 (171)
T cd03228 81 VPQDPFLFSGTIRENI------------------------------------LSGGQRQRIAIARALLRDPPILILDEAT 124 (171)
T ss_pred EcCCchhccchHHHHh------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9999988888999887 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
++||+.+++.+.+.|.++.+ ++|+|++|||++.+.. ||++++|++|+
T Consensus 125 ~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 125 SALDPETEALILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred cCCCHHHHHHHHHHHHHhcC--CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999999999999853 6999999999999987 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-49 Score=347.11 Aligned_cols=201 Identities=27% Similarity=0.405 Sum_probs=168.9
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHHhcce
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSLRRKV 140 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~~~~i 140 (298)
.+.|+++.|+++.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 578999999756689999999999999999999999999999999999999999999999998754331 2345679
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|++|++.+|+.|++||+.++... ..++..++++.+++.+. ..++++.+||||||||++|||||+
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPF-----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcC-----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 999999998878999999876321 12334455666665321 134578899999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHH--HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIED--VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~--~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
.+|++|||||||++||+.+++.+++ +++.+.+ .|.|+|++||+++.+. .||++++|++|.
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 9999999999999999999999998 5666544 4899999999999985 699999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=387.72 Aligned_cols=216 Identities=25% Similarity=0.432 Sum_probs=187.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ 139 (298)
.++++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .++++
T Consensus 255 ~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 255 EVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred CcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 45799999984 379999999999999999999999999999999999999999999999998765442 35678
Q ss_pred eEEEeCCC---CCCc-ccHHHHhHhCcc--cc---C-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 140 VGMLFQIP---ALFE-GTVVDNIRYGPQ--LR---G-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 140 ig~v~Q~~---~l~~-~tv~eni~~~~~--~~---~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
+||+||++ .+++ .|+.||+.++.. .. + .. ..++++.++++.+++.....++++.+|||||||||+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 99999997 4565 599999987531 10 1 11 123457889999999424678999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++.+..+||++++|++|+++..++++++.
T Consensus 409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 999999999999999999999999999999999765 999999999999999999999999999999999887653
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=343.41 Aligned_cols=181 Identities=36% Similarity=0.640 Sum_probs=156.7
Q ss_pred CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhcceEEEeCCC--CCC
Q 022337 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIP--ALF 150 (298)
Q Consensus 75 ~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~--~~~~~~~~~ig~v~Q~~--~l~ 150 (298)
+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+++.++|+||++ .++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 45679999999999999999999999999999999999999999999999999842 12234567899999998 356
Q ss_pred cccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH
Q 022337 151 EGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 228 (298)
Q Consensus 151 ~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~ 228 (298)
+.|++||+.++....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 6799999988643222221 234678899999996 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCHHH
Q 022337 229 STQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 229 ~~~~~~~~l~~l~~~~g~tii~itHd~~~ 257 (298)
+++.+.+.|++++++ |+|||++|||+++
T Consensus 162 ~~~~~~~~l~~~~~~-~~tili~sH~~~~ 189 (190)
T TIGR01166 162 GREQMLAILRRLRAE-GMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEeecccc
Confidence 999999999999764 8999999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-49 Score=343.57 Aligned_cols=189 Identities=33% Similarity=0.536 Sum_probs=161.6
Q ss_pred EEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 64 FRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 64 l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 4789999999643 3699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++|+||++.+++.|++||+.++... ..++..++++.+++.+ ...++.+.+||+|||||++|||||
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPF-----DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCc-----CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999988999999986432 1223334444444321 234566789999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~-l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
+.+|+++||||||++||+.+++.+.+. ++++.++ |.|||++||+++.+.. ||++++|++|+
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999999999999999984 5666554 8999999999999987 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-49 Score=350.25 Aligned_cols=199 Identities=31% Similarity=0.413 Sum_probs=171.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
+.++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~------ 90 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G------ 90 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c------
Confidence 78889999995 57899999999999999999999999999999999999999999999999875311 1
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+...+++ .|+.||+.++...++.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||
T Consensus 91 -~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 91 -LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred -ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1122333 59999998764332221 1234577889999996 57889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||+|||+.+++.+.+.|++++++ |+|||++||+++++..+||++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999998765 899999999999999999999999999998654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=387.88 Aligned_cols=217 Identities=22% Similarity=0.391 Sum_probs=186.9
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~ 139 (298)
.+.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ...+++
T Consensus 255 ~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 255 EVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred CcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 346899999832 48999999999999999999999999999999999999999999999998864433 334678
Q ss_pred eEEEeCCCC---CCc-ccHHHHhHhCcccc----C---CC-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 140 VGMLFQIPA---LFE-GTVVDNIRYGPQLR----G---KK-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 140 ig~v~Q~~~---l~~-~tv~eni~~~~~~~----~---~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
++|+||++. +|+ .|+.||+.++.... + .. ..++++.++++.+++..+..++++.+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 999999973 666 59999998754211 1 01 123457889999999434678999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||+.+|++|||||||+|||+.+++.++++|.+++++ |.|||++|||++++..+||++++|++|++++.|+++++.
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999999765 899999999999999999999999999999999887653
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=425.45 Aligned_cols=221 Identities=22% Similarity=0.370 Sum_probs=197.9
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
+.+++++||+|+|+++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. +..+.+++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 4579999999999642 579999999999999999999999999999999999999999999999999864 34456778
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
|||+||++.+++ .|++||+.+....++... .++.+.++++.+++. +..++++++||||||||++||+||+.+|+||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999887 499999998655444322 234577889999996 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+||||.+++.+++.|++++++ |+|||++||++++++.+|||+++|++|+++..|+++++..
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999998765 8999999999999999999999999999999999988743
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=371.91 Aligned_cols=214 Identities=30% Similarity=0.511 Sum_probs=193.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~i 140 (298)
+.+++++++|+|+ +..+++||||+|++||+.||+|+||||||||+|+|.|+|+|++|+|+++|+++.-.++. ..+..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5699999999996 77899999999999999999999999999999999999999999999999998765554 567789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcccc-C----CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLR-G----KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~-~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
|+|+|++.|++. ||.|||.++.... + .....+++.++.+.+|++- -.++++.+||-||||||.|.+||+++|+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQRVEIlKaLyr~a~ 160 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQRVEILKALYRGAR 160 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHHHHHHHHHhcCCC
Confidence 999999999985 9999999986421 1 1223567889999999974 4688999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
+||||||||-|-|...+++++.+++++++ |+|||+|||.++++.++|||+-||++|+++...+
T Consensus 161 iLILDEPTaVLTP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 161 LLILDEPTAVLTPQEADELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999875 9999999999999999999999999999876655
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=353.20 Aligned_cols=201 Identities=33% Similarity=0.534 Sum_probs=183.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHHHHhcceEEEeCCCCCCcc-
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVLSLRRKVGMLFQIPALFEG- 152 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~----~~~~~~~~ig~v~Q~~~l~~~- 152 (298)
.+| ++||+.+.-.++||.|+||||||||+|+|+|+.+|++|.|.+||+-+.+. .....+|+|||||||..|||.
T Consensus 13 ~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 13 FAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred eEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 344 79999988679999999999999999999999999999999999877442 223457899999999999995
Q ss_pred cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHH
Q 022337 153 TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 232 (298)
Q Consensus 153 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~ 232 (298)
||+.|+.|+.+.. .....+++.+.+|+. ++++++|.+|||||||||+|+|||+.+|++||||||.|+||...+++
T Consensus 92 tVrgNL~YG~~~~----~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~E 166 (352)
T COG4148 92 TVRGNLRYGMWKS----MRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166 (352)
T ss_pred EEecchhhhhccc----chHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhH
Confidence 9999999997532 456788999999996 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 233 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 233 ~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++-+|.++.++.+.-|++|||.++++.++||+|++|++|++.+.|..+++..
T Consensus 167 ilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999989999999999999999999999999999999999888754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=422.69 Aligned_cols=220 Identities=30% Similarity=0.502 Sum_probs=197.9
Q ss_pred CCeEEEEeEEEEeC-CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESD-DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~-~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
.+.++++||+|.|+ +++.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.|+.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 34799999999995 34679999999999999999999999999999999999999999999999999864 34556788
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+++. ||+||+.++.+.++.. ..++++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkVL 1083 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999998874 9999999876544432 2245688999999997 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++..+..
T Consensus 1084 LLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1084 VLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999984 3 8999999999999999999999999999999999887753
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-48 Score=327.43 Aligned_cols=161 Identities=34% Similarity=0.669 Sum_probs=150.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ig~ 142 (298)
++++|+++.|+ ++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 47899999995 56799999999999999999999999999999999999999999999999998766543 35678999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+|| ||||||||++|||||+.+|++|||||||
T Consensus 80 ~~q-------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 80 VYQ-------------------------------------------------LSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred EEe-------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
++||+.+++.+.+.|++++++ |.|+|++|||++.+..+||++++|++|++++
T Consensus 111 ~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 111 AALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred cCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999754 8999999999999999999999999999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=350.05 Aligned_cols=226 Identities=25% Similarity=0.402 Sum_probs=179.4
Q ss_pred hhHHHHHHhhhccCCCCCccccccCCCCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 34 SLFRDEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
..|.+.+.+.+.+..+ .......+...+.|+++|+++. ++++|+++||+|++||+++|+||||||||||+++|+|+
T Consensus 11 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 11 AFWDEGFGELLEKAKQ-ENNDRKHSSDDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHHHHHhcccc-cccccccCCCCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455555554444322 1112222345567999999985 35699999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch-------
Q 022337 114 WEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS------- 186 (298)
Q Consensus 114 ~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~------- 186 (298)
++|++|+|.++| .++|++|++.+++.|++||+.++... ...++.+.++.+++.+.
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~-----~~~~~~~~l~~~~l~~~l~~~~~~ 148 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY-----DEYRYKSVVKACQLEEDITKFPEK 148 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccccc-----CHHHHHHHHHHhCCHHHHHhcccc
Confidence 999999999987 38999999998888999999876421 11223344444454211
Q ss_pred ---hhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 187 ---FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 187 ---~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l-~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
..++.+.+||||||||++|||||+.+|++|||||||++||+.++..+++.+ .++. + +.|||++||+++.+. .|
T Consensus 149 ~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~-~~ 225 (282)
T cd03291 149 DNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KA 225 (282)
T ss_pred ccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHHHH-hC
Confidence 123446799999999999999999999999999999999999999999865 5554 3 789999999999984 79
Q ss_pred CEEEEEeCCEEEEeeChhhhhc
Q 022337 263 DVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 263 d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|++++|++|++++.|+++++..
T Consensus 226 d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 226 DKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999888754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=413.87 Aligned_cols=214 Identities=26% Similarity=0.428 Sum_probs=192.6
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..|+++||+++|+++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.|+..++...+|+++
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 369999999999743 579999999999999999999999999999999999997 899999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||||+|.+|++|+++||.... ..+++++.++++.+++.+. .....+..||||||||++|||||+
T Consensus 1295 s~IpQdp~LF~GTIR~NLdp~~-----~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALL 1369 (1490)
T TIGR01271 1295 GVIPQKVFIFSGTFRKNLDPYE-----QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL 1369 (1490)
T ss_pred EEEeCCCccCccCHHHHhCccc-----CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999996431 2357789999999888532 122234579999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|+|||||||||+||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|+|++.|+|.++..
T Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1370 SKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS--NCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999998754 7999999999999975 99999999999999999999875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=383.14 Aligned_cols=217 Identities=22% Similarity=0.394 Sum_probs=186.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRR 138 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~ 138 (298)
..++++++|+++ .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+... .++
T Consensus 265 ~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 265 GAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred CCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 345899999983 2699999999999999999999999999999999999999999999999987655443 356
Q ss_pred ceEEEeCCC---CCCc-ccHHHHhHhCcc----ccCCC-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 139 KVGMLFQIP---ALFE-GTVVDNIRYGPQ----LRGKK-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 139 ~ig~v~Q~~---~l~~-~tv~eni~~~~~----~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+++|+||++ .+|+ .|+.+|+..... ..... ..++++.++++.+++.....++++.+|||||||||+|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 799999985 4676 499999864211 11111 12345788999999952357899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++.++|||+++|++|+++..++++++.
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999999764 899999999999999999999999999999999887654
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-48 Score=343.20 Aligned_cols=192 Identities=33% Similarity=0.495 Sum_probs=168.3
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCC---cccHHHHhHhC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF---EGTVVDNIRYG 161 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~---~~tv~eni~~~ 161 (298)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||++.++ +.|+.+|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 2457899999998763 35999999876
Q ss_pred cccc----CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH
Q 022337 162 PQLR----GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235 (298)
Q Consensus 162 ~~~~----~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~ 235 (298)
.... ... ..++++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 3211 111 1234678899999997 57888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 236 ~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.|++++++ |+|+|++|||++.+.++||+++++ +|+++..|+++++.+
T Consensus 155 ~l~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 155 LFIELAGA-GTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 99998754 899999999999999999999999 899999999888754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=347.76 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=177.4
Q ss_pred eEEEEeEEEEeCC-------------------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE
Q 022337 63 KFRVRELRKESDD-------------------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123 (298)
Q Consensus 63 ~l~~~~l~~~y~~-------------------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i 123 (298)
.++++||++.|.. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3677777776632 224899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHH
Q 022337 124 DGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQA 200 (298)
Q Consensus 124 ~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 200 (298)
+|. +++++|++.+++ .|+.+|+.++....+... ..+.+.++++.+++. +..++++.+|||||+
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~ 149 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-EFIYQPVKKYSSGMR 149 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHH
Confidence 984 356777776665 499999987533222221 123456778888996 578899999999999
Q ss_pred HHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChh
Q 022337 201 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280 (298)
Q Consensus 201 QRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~ 280 (298)
||++|||||+.+|++|||||||+|||+.+++.+++.|.++.+ .|.|||++||+++.+..+||++++|++|++++.|+++
T Consensus 150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999865 4899999999999999999999999999999999988
Q ss_pred hhhcc
Q 022337 281 LLSEA 285 (298)
Q Consensus 281 ~~~~~ 285 (298)
++.+.
T Consensus 229 ~~~~~ 233 (264)
T PRK13546 229 DVLPK 233 (264)
T ss_pred HHHHH
Confidence 77553
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=379.03 Aligned_cols=218 Identities=22% Similarity=0.375 Sum_probs=184.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ 139 (298)
+++|+++|+++.| +.+|+++||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++...+.. ..++.
T Consensus 248 ~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 248 EVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred CcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 4589999999874 3599999999999999999999999999999999999999999999999998765543 34677
Q ss_pred eEEEeCCCC---CCc-ccHHHHh-----HhCccccCC-C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 140 VGMLFQIPA---LFE-GTVVDNI-----RYGPQLRGK-K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 140 ig~v~Q~~~---l~~-~tv~eni-----~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
++|+||++. +|+ .|+.+|+ .+.....+. . ..++++.++++.+++.....++++.+|||||||||+|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence 999999853 565 4777663 322111111 1 123457788999999533578999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|++.+|+||||||||+|||+.+++.+++.|.++.++ |.|||++|||++++..+|||+++|++|+++..++.+++
T Consensus 405 al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 405 WLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred HHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999998764 89999999999999999999999999999988876543
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=371.87 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=180.2
Q ss_pred CCCeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 60 QKPKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
..++++++|++++|+++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--------- 88 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--------- 88 (549)
T ss_pred ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---------
Confidence 45689999999999654 3699999999999999999999999999999999999999999999999751
Q ss_pred cceEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
++.+.+.+++ .|++||+.+.....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|+
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~-~~ld~~~~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG-KFIYQPVKTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 1222334444 499999987543222221 124467789999996 57889999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.+++.+++.|.++++ .|.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999865 48999999999999999999999999999999999887654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=358.30 Aligned_cols=236 Identities=33% Similarity=0.524 Sum_probs=204.5
Q ss_pred CCCeEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC
Q 022337 60 QKPKFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL 131 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~ 131 (298)
.++.++++|++..|.. ...++++|||+|++||.+||||+||||||-..+.++||++- -+|+|.++|+++-..
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 3568999999999852 24799999999999999999999999999999999999964 379999999999887
Q ss_pred CHHHHh----cceEEEeCCCC--CCcc-cHHHHhHhCcccc-CC--CccHHHHHHHHHHcCCCc--hhhcCCCCCCChhH
Q 022337 132 DVLSLR----RKVGMLFQIPA--LFEG-TVVDNIRYGPQLR-GK--KLTENEVYKLLSLADLDS--SFLNKTGGEISVGQ 199 (298)
Q Consensus 132 ~~~~~~----~~ig~v~Q~~~--l~~~-tv~eni~~~~~~~-~~--~~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGq 199 (298)
+..++| .+|+++||+|. |-|. |+...+.-..+.+ +. ...++++.++|+.+|+.+ ...+.||++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 766554 37999999995 4454 7766666544332 22 234678899999999963 35688999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 200 kQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
||||.||+||+++|++||.||||++||...+.+++++|+++.++.|.++++||||+..+.++||||+||.+|++++.|+.
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhh-ccCChHHHHHhh
Q 022337 280 DLLS-EAKHPMALRFLQ 295 (298)
Q Consensus 280 ~~~~-~~~~~~~~~~~~ 295 (298)
+.+. .+.|+|++.++.
T Consensus 243 ~~lF~~PqHpYTr~Ll~ 259 (534)
T COG4172 243 ETLFAAPQHPYTRKLLA 259 (534)
T ss_pred HHHhhCCCChHHHHHHh
Confidence 8875 567889887765
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=365.46 Aligned_cols=220 Identities=35% Similarity=0.551 Sum_probs=194.2
Q ss_pred CCCCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 59 IQKPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
..+..+.++++++..++. +++++++||++.+||.+|||||||||||||.|+|.|.++|.+|.|++||-++..|+.+.+-
T Consensus 330 ~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 330 APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 345579999999977654 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHH
Q 022337 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAr 207 (298)
++|||+||+-.||++||.|||.-. ..+.+.+++.++.+..|.++ ......+..||||||||+++||
T Consensus 410 ~hiGYLPQdVeLF~GTIaeNIaRf----~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLAR 485 (580)
T COG4618 410 RHIGYLPQDVELFDGTIAENIARF----GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485 (580)
T ss_pred cccCcCcccceecCCcHHHHHHhc----cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHH
Confidence 999999999999999999999722 11345566777777777642 1233346799999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|.+++||||-|+||...+..+.+.|.+.+++ |.|+|+|||+++.+. .+|+|++|++|++...|+.+++..
T Consensus 486 AlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r-G~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred HHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc-CCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHHH
Confidence 999999999999999999999999999999998765 999999999999774 699999999999999999888754
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=359.34 Aligned_cols=196 Identities=36% Similarity=0.607 Sum_probs=171.1
Q ss_pred EEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cH
Q 022337 95 IIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TE 171 (298)
Q Consensus 95 iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~ 171 (298)
|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++++|+||++.+|+. ||+||+.|+....+... ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876543 36789999999999975 99999998754333221 23
Q ss_pred HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 022337 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251 (298)
Q Consensus 172 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~i 251 (298)
+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.++.|+|+|+|
T Consensus 79 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 79 PRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5678899999996 578999999999999999999999999999999999999999999999999999977668999999
Q ss_pred ccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHH
Q 022337 252 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRF 293 (298)
Q Consensus 252 tHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~ 293 (298)
|||++++..+|||+++|++|++++.|+++++... .+.....|
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~ 200 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARF 200 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHh
Confidence 9999999999999999999999999999887543 23344444
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-48 Score=378.56 Aligned_cols=217 Identities=22% Similarity=0.329 Sum_probs=180.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECCEeCCC-CCHHHHh
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDGRDITD-LDVLSLR 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g~~i~~-~~~~~~~ 137 (298)
..++++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++.. .+....+
T Consensus 257 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 257 NEPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CCceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 356899999999995 45799999999999999999999999999999999998876 79999999987632 2223456
Q ss_pred cceEEEeCCCCCC-c--ccHHHHhHhCcc----ccC-CC-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 138 RKVGMLFQIPALF-E--GTVVDNIRYGPQ----LRG-KK-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 138 ~~ig~v~Q~~~l~-~--~tv~eni~~~~~----~~~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++||++|++.++ . .++.+++.++.. .+. .. ..++++.++++.+++.....++++.+|||||||||+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 7899999998653 2 367777654321 111 11 1234678899999996326789999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh-hcCEEEEEeCCEEEEee
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR-IADVVCLLVNGEIVEVL 277 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~-~~d~v~vl~~G~i~~~g 277 (298)
|+.+|++|||||||+|||+.+++.+++.|++++++.+.|||++|||++++.. +||++++|++|++++..
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999976534579999999999987 59999999999998754
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=379.58 Aligned_cols=205 Identities=28% Similarity=0.384 Sum_probs=177.2
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++||
T Consensus 1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 589999999995 568999999999999999999999999999999999999999999999872 35999
Q ss_pred EeCCCCCCcc-cHHHHhHhCcc-c----------cCC-----------------------CccHHHHHHHHHHcCCCchh
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQ-L----------RGK-----------------------KLTENEVYKLLSLADLDSSF 187 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~-~----------~~~-----------------------~~~~~~~~~~l~~~~l~~~~ 187 (298)
++|++.+++. |++||+.++.. . ... ...++++.++++.+|+.+..
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 9999988764 99999987531 0 000 01134577899999996433
Q ss_pred hcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .|.|||+||||++.+..+||++++
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEE
Confidence 4578899999999999999999999999999999999999999999999864 378999999999999999999999
Q ss_pred EeCCEEE-EeeChhhhh
Q 022337 268 LVNGEIV-EVLKPDLLS 283 (298)
Q Consensus 268 l~~G~i~-~~g~~~~~~ 283 (298)
|++|+++ ..|+++++.
T Consensus 225 l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 225 LDYGELRVYPGNYDEYM 241 (530)
T ss_pred EeCCEEEEecCCHHHHH
Confidence 9999994 788887664
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=325.60 Aligned_cols=163 Identities=36% Similarity=0.489 Sum_probs=149.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|++++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEE
Confidence 468999999964467999999999999999999999999999999999999999999999873 579999
Q ss_pred eCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC
Q 022337 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS 223 (298)
Q Consensus 144 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts 223 (298)
+|++.+++.|++||+.++ .+.+||||||||++|||||+.+|+++||||||+
T Consensus 70 ~q~~~~~~~tv~~nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~ 120 (166)
T cd03223 70 PQRPYLPLGTLREQLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATS 120 (166)
T ss_pred CCCCccccccHHHHhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 999988777999999753 356899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 224 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 224 ~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
+||+.+++.+.+.|+++ +.|+|++|||++.+ .+||++++|++|
T Consensus 121 ~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 121 ALDEESEDRLYQLLKEL----GITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred ccCHHHHHHHHHHHHHh----CCEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 99999999999999876 57999999999876 689999999876
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-47 Score=376.12 Aligned_cols=205 Identities=27% Similarity=0.331 Sum_probs=180.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ +++
T Consensus 317 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 317 RNALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred CceEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 45899999999995 567999999999999999999999999999999999999999999999873 469
Q ss_pred EEEeCCCC--CCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPA--LFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
||++|++. +++ .|+.+|+.+... ....++++.++++.+++..+..++++.+|||||||||+|||||+.+|++||
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll 461 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQ---EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhcc---CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999974 444 499999875211 112346688999999995346789999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~~~ 284 (298)
|||||++||+.+++.+.+.|+++ +.|||+||||++++..+|||+++|++|+++ ..|++.++.+
T Consensus 462 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 462 MDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999999999999876 349999999999999999999999999998 7788877654
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=381.66 Aligned_cols=219 Identities=32% Similarity=0.492 Sum_probs=193.4
Q ss_pred CeEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH--
Q 022337 62 PKFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-- 136 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-- 136 (298)
++++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999999532 469999999999999999999999999999999999999999999999999987665443
Q ss_pred --hcceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 137 --RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 137 --~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
++.++|+||++.+|+. |+.||+.+.....+.. ..++++.++++.+++. +..++.+.+||+||+||++|||||+.
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 4689999999999875 9999998754322221 2235678899999996 57899999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|++|||||||+|||+.+++.+.+.|++++++ |.|+|++||+++.+. .|||+++|++|++++.|++++..
T Consensus 162 ~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~-g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 162 GGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999998754 899999999999885 69999999999999999987653
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=379.31 Aligned_cols=205 Identities=27% Similarity=0.313 Sum_probs=178.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.+||+++||+++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ ...+
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 46899999999995246899999999999999999999999999999999999999999999874 1469
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccc-c-------------CCC------------------------ccHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQL-R-------------GKK------------------------LTENEVYKLLSLA 181 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~-~-------------~~~------------------------~~~~~~~~~l~~~ 181 (298)
||+||++.+++. |+.||+.++... . ... ...+++.++++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999998875 999999875310 0 000 0124577889999
Q ss_pred CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh
Q 022337 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 182 ~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~ 261 (298)
|++ . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+
T Consensus 153 gl~-~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~~~~ 226 (556)
T PRK11819 153 RCP-P-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFLDNV 226 (556)
T ss_pred CCC-c-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhh
Confidence 995 3 68899999999999999999999999999999999999999999999999986 24999999999999999
Q ss_pred cCEEEEEeCCEEE-EeeChhhh
Q 022337 262 ADVVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 262 ~d~v~vl~~G~i~-~~g~~~~~ 282 (298)
||+|++|++|+++ ..|+.+++
T Consensus 227 ~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 227 AGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred cCeEEEEeCCEEEEecCCHHHH
Confidence 9999999999986 67877665
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-47 Score=329.89 Aligned_cols=191 Identities=21% Similarity=0.369 Sum_probs=164.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++.++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ++.++|
T Consensus 1 ~l~~~~l~~~~~-~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 1 MLSLHQLQFNIE-QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred CeEEEEeeEEEC-CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 478999999995 44455 599999999999999999999999999999999999999999999875432 356999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
++|++.+++ .|+.||+.+...... ..+++.++++.+++. +..++++.+||||||||++||||++.+|+++|||||
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYN---SAETLYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcc---cHHHHHHHHHHcCCH-hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999986654 699999987543221 345678889999996 567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEE
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v 265 (298)
|++||+.+++.+.+.|++..+ .|.|+|++||+++.+.. ||-+
T Consensus 151 ~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 151 ETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCccccch-hhee
Confidence 999999999999999987654 48999999999998865 7765
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=339.66 Aligned_cols=195 Identities=24% Similarity=0.315 Sum_probs=164.2
Q ss_pred EeCCCCcceeeeeEEEe-----CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCC
Q 022337 72 ESDDGAPILKGVNMEIP-----KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI 146 (298)
Q Consensus 72 ~y~~~~~vL~~isl~i~-----~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~ 146 (298)
+|++..+.+++++|++. +||+++|+||||||||||+|+|+|+++|++|+|.++|. .++|++|+
T Consensus 2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~ 69 (246)
T cd03237 2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQY 69 (246)
T ss_pred CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEeccc
Confidence 45544557778888876 79999999999999999999999999999999999884 58999999
Q ss_pred CCCC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC
Q 022337 147 PALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225 (298)
Q Consensus 147 ~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L 225 (298)
+..+ ..||.||+.+...... .......++++.+++. +..++++.+|||||||||+|||||+.+|+++||||||++|
T Consensus 70 ~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 70 IKADYEGTVRDLLSSITKDFY--THPYFKTEIAKPLQIE-QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred ccCCCCCCHHHHHHHHhhhcc--ccHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 8754 5699999976432111 1223467789999996 5788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE--EeeChhh
Q 022337 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV--EVLKPDL 281 (298)
Q Consensus 226 D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~--~~g~~~~ 281 (298)
|+.++..+.+.|++++++.|+|||+||||++.+..+||++++|+++..+ ..+++.+
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 9999999999999997666899999999999999999999999765433 3344444
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=374.29 Aligned_cols=205 Identities=27% Similarity=0.307 Sum_probs=175.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +..||
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 4899999999995356799999999999999999999999999999999999999999999874 14699
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccc-c-------------CCCcc------------------------HHHHHHHHHHcC
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQL-R-------------GKKLT------------------------ENEVYKLLSLAD 182 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~-~-------------~~~~~------------------------~~~~~~~l~~~~ 182 (298)
|+||++.+++. |+.||+.++... . ..... ..++.++++.++
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 99999988874 999999875321 0 00000 123556777788
Q ss_pred CCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 183 LDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 183 l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
++ . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+..+|
T Consensus 152 l~-~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 152 CP-P-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred CC-c-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhc
Confidence 84 3 57889999999999999999999999999999999999999999999999876 349999999999999999
Q ss_pred CEEEEEeCCEEE-EeeChhhhh
Q 022337 263 DVVCLLVNGEIV-EVLKPDLLS 283 (298)
Q Consensus 263 d~v~vl~~G~i~-~~g~~~~~~ 283 (298)
|++++|++|+++ ..|+.+++.
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHH
Confidence 999999999976 678877653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-47 Score=382.98 Aligned_cols=211 Identities=29% Similarity=0.370 Sum_probs=180.8
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC--ccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP--SGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~--~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++|++++|+ ++.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. ..++++|||
T Consensus 71 ~~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv 145 (659)
T PLN03211 71 ISDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFV 145 (659)
T ss_pred cccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEE
Confidence 445666663 567999999999999999999999999999999999999985 8999999998742 345679999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccC---CCc--cHHHHHHHHHHcCCCchhh-----cCCCCCCChhHHHHHHHHHHHcCC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRG---KKL--TENEVYKLLSLADLDSSFL-----NKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+|++.+++. ||+||+.+....+. ... ..++++++++.+|+. +.. ++.+.+||||||||++|||||+.+
T Consensus 146 ~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~ 224 (659)
T PLN03211 146 TQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLIN 224 (659)
T ss_pred CcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence 999999874 99999998643321 111 124578899999996 343 345778999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+.++||++++|++|++++.|+++++.
T Consensus 225 P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 9999999999999999999999999999764 999999999998 588899999999999999999988763
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=372.11 Aligned_cols=208 Identities=28% Similarity=0.359 Sum_probs=178.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ + .++
T Consensus 322 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 322 DKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred CeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 46899999999995 56799999999999999999999999999999999999999999999853 2 159
Q ss_pred EEEeCCC-CCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 141 GMLFQIP-ALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 141 g~v~Q~~-~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||+||++ .+++ .|+.||+.++....+......+..++++.+++.....++++.+|||||||||+|||||+.+|++|||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999997 5666 4999999986432222222344567899999963356889999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC-CEEE-EeeChhhhhc
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-GEIV-EVLKPDLLSE 284 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~-G~i~-~~g~~~~~~~ 284 (298)
||||+|||+.+++.+.+.|.++. + |||+||||++++..+||++++|++ |++. ..|+.+++.+
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLEFP---G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 99999999999999999999872 4 899999999999999999999996 7876 4677776644
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=371.53 Aligned_cols=208 Identities=28% Similarity=0.361 Sum_probs=177.7
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++ + .+
T Consensus 319 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~ 386 (552)
T TIGR03719 319 GDKVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VK 386 (552)
T ss_pred CCeEEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eE
Confidence 356899999999995 56799999999999999999999999999999999999999999999854 2 15
Q ss_pred eEEEeCCCC-CCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 140 VGMLFQIPA-LFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 140 ig~v~Q~~~-l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|||+||++. +++ .|+.||+.++....+....+.++.++++.+++.....++++.+|||||||||+|||||+.+|++||
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll 466 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 999999974 665 499999998653222221233466789999996335688999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC-CEEE-EeeChhhhh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-GEIV-EVLKPDLLS 283 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~-G~i~-~~g~~~~~~ 283 (298)
|||||+|||+.+++.+.+.|.++. + |||+||||++++..+||++++|++ |+++ ..|+.+++.
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 999999999999999999999872 4 899999999999999999999997 5876 456666553
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=340.55 Aligned_cols=204 Identities=25% Similarity=0.323 Sum_probs=172.0
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEE-----------ECCEeCCCCCHHH
Q 022337 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-----------LDGRDITDLDVLS 135 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~-----------i~g~~i~~~~~~~ 135 (298)
.|++++|++++.+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|+ ++|+++.......
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 3788999644469999995 999999999999999999999999999999999996 7888875442222
Q ss_pred Hh--cceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 136 LR--RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 136 ~~--~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
.+ ..++|++|++.+++.++.+++.+... ....++.+.++++.+++. +..++.+.+||||||||++|||||+.+|
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLK---KKDERGKLDELVDQLELR-HVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhc---hhHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 22 24799999988777777777776432 112345688999999996 5678999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+++||||||++||+.+++.+.+.|+++.++ ++|||++|||++.+..+||+|++|+ |++.+.|
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999998764 8999999999999999999999994 6666543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=396.81 Aligned_cols=203 Identities=27% Similarity=0.444 Sum_probs=175.7
Q ss_pred CeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++|++|+|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|.+. .+++.
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCc
Confidence 35999999999964 35799999999999999999999999999999999999999998763 24568
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
|+||+|+|.+|+.|++|||.|+.. .++++..++++.+++.++ .....+..||||||||++||||+
T Consensus 681 Iayv~Q~p~Lf~gTIreNI~fg~~-----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 681 VAYVPQVSWIFNATVRENILFGSD-----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred EEEEcCccccccccHHHHhhcCCc-----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999842 346677788887777432 23345678999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~-l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+++|+|+|||||||+||+.+.+++++. +.... .++|+|+|||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999988765 45443 3899999999999875 699999999999999999988754
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=367.70 Aligned_cols=199 Identities=26% Similarity=0.338 Sum_probs=176.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++|+++.|+ + ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ .+
T Consensus 337 ~~~~l~~~~ls~~~~-~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~ 401 (590)
T PRK13409 337 RETLVEYPDLTKKLG-D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LK 401 (590)
T ss_pred CceEEEEcceEEEEC-C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------ee
Confidence 356899999999995 3 35999999999999999999999999999999999999999999885 14
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
++|+||++.++. .||+||+.++.... . ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~-~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLL 477 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDL--G-SSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLL 477 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhc--C-hHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999987655 59999998753211 1 233567899999996 678999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
||||++||+.++..+.+.|++++++.|+|+|+||||++++..+|||+++|+ |++...|.
T Consensus 478 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 478 DEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999999999999987668999999999999999999999996 48877665
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=345.66 Aligned_cols=217 Identities=37% Similarity=0.557 Sum_probs=195.5
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..+.++|++|.|.+++++|+++||++++|+.+|++||+|+||||++++|.+++++++|.|.+||+|++......+|+-||
T Consensus 261 g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 261 GAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred ceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 35889999999988889999999999999999999999999999999999999999999999999999887788999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+|||+..||+.|+..|+.++.. ...++++..+++.+.+.+ ....+++-.|||||||||+|||++++
T Consensus 341 ~VPQDtvLFNDti~yni~ygr~----~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 341 IVPQDTVLFNDTIAYNIKYGRP----DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred cCcccceehhhhHHHHHhccCc----cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 9999999999999999999842 345566666666665532 12334566899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+|+||+|||.||+||..+++++...|++..+ |.|.++|.|+++.+.. ||.|+||++|+|+|.|+++++...
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc
Confidence 9999999999999999999999999999874 8999999999999976 999999999999999999998765
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=395.41 Aligned_cols=202 Identities=28% Similarity=0.462 Sum_probs=176.3
Q ss_pred CeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc-cEEEECCEeCCCCCHHHHhc
Q 022337 62 PKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-GTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~-G~I~i~g~~i~~~~~~~~~~ 138 (298)
+.++++|++|+|++ ++++|+|+||+|++||.++|+||||||||||+++|+|.++|++ |+|.+ +.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~ 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RG 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cC
Confidence 36999999999964 2579999999999999999999999999999999999999999 89974 45
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHH
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAra 208 (298)
+|+||+|+|.+|+.|++|||.|+.. .++++..++++.+++.++ ..+..+..|||||||||+||||
T Consensus 680 ~Iayv~Q~p~LfngTIreNI~fg~~-----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 680 TVAYVPQVSWIFNATVRDNILFGSP-----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred eEEEEcCccccCCCCHHHHHhCCCc-----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999843 346778888888877432 2345577899999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIED-VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~-~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++++|+|+|||||||+||+.+.+++++ .+....+ |+|+|+|||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~--~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELR--GKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhc--CCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999988865 4555533 899999999999875 599999999999999999988754
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-46 Score=316.49 Aligned_cols=220 Identities=26% Similarity=0.424 Sum_probs=198.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC-EeCCCCCHHHH-hcc
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG-RDITDLDVLSL-RRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g-~~i~~~~~~~~-~~~ 139 (298)
+.++++|++++| ++-.+|+++||++.+||.-+|||||||||||++..|+|-.+|++|+|+++| .++.+++..++ |..
T Consensus 4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 579999999999 477899999999999999999999999999999999999999999999999 89988876555 567
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccC---------C-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRG---------K-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~---------~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
||--||.|..|.. ||+||+.+...... . ...+++++++|...||. +..++....||-||||++.|++.
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~-~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-DERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc-hhhhhhhhhhccchhhhhhhhee
Confidence 9999999999975 99999998753211 1 12345799999999997 57889999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++++|++|+||||++|+-.......-++|+.++. +.+|++|.|||.++..+|++|-||+.|.+..+|+.+++..+
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 9999999999999999999999999999999975 68999999999999999999999999999999999988653
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=368.00 Aligned_cols=207 Identities=26% Similarity=0.328 Sum_probs=177.1
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++||++.|+ ++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+ |.++ +
T Consensus 316 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~ 383 (635)
T PRK11147 316 GKIVFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------E 383 (635)
T ss_pred CCceEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------E
Confidence 456899999999995 567999999999999999999999999999999999999999999998 5322 5
Q ss_pred eEEEeCCC-CCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 140 VGMLFQIP-ALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 140 ig~v~Q~~-~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+||++|++ .+++. ||.||+.++...........++.++++.+++..+..++++.+|||||||||+|||||+.+|++||
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999986 46664 99999987532111111234678889999996446788999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe-CCEEEE-eeChhhh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEIVE-VLKPDLL 282 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~-~G~i~~-~g~~~~~ 282 (298)
|||||++||+.+++.+.+.|+++ +.|||+||||.+++..+||++++|+ +|++.. .|+.+++
T Consensus 464 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999876 3499999999999999999999998 899875 4555554
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=323.17 Aligned_cols=189 Identities=21% Similarity=0.238 Sum_probs=158.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEE-ECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-LDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVV 155 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~-i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~ 155 (298)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+. +.+++.+++. |+.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-------------~~~~~~l~~~ltv~ 67 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------------LGANSFILPGLTGE 67 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-------------cccccccCCcCcHH
Confidence 379999999999999999999999999999999999999999997 7765321 2245667775 999
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~ 235 (298)
||+.+....++.. ..+....+.+.++++ ...++++.+||+|||||++|||||+.+|+++||||||+++|+.+++.+.+
T Consensus 68 enl~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~ 145 (213)
T PRK15177 68 ENARMMASLYGLD-GDEFSHFCYQLTQLE-QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQA 145 (213)
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHhChh-HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence 9999865433322 122223344667786 46788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 236 ~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
.+.+..+ ++|+|++||+++.+..+||++++|++|++++.++.++..
T Consensus 146 ~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 146 ALACQLQ--QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHhh--CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 8876544 468999999999999999999999999999999887763
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=366.29 Aligned_cols=192 Identities=25% Similarity=0.402 Sum_probs=167.5
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +++++
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~ 518 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLF 518 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEE
Confidence 4799999999996556799999999999999999999999999999999999999999998753 45799
Q ss_pred EEeCCCCCCcccHHHHhHhCccccC---CCccHHHHHHHHHHcCCCchhhcCC---------CCCCChhHHHHHHHHHHH
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLLSLADLDSSFLNKT---------GGEISVGQAQRVALARTL 209 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkQRv~iAral 209 (298)
|+||++.+++.|++||+.++..... ....++++.++++.++++ ++.+++ +.+||||||||++|||||
T Consensus 519 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal 597 (659)
T TIGR00954 519 YVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT-HILEREGGWSAVQDWMDVLSGGEKQRIAMARLF 597 (659)
T ss_pred EECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCH-HHHhhcCCcccccccccCCCHHHHHHHHHHHHH
Confidence 9999999998899999998753211 112456788999999996 445543 379999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
+++|+++||||||++||+.+++.+.+.+++. |.|+|+||||++.+ ++||++++|+.
T Consensus 598 ~~~p~illLDEpts~LD~~~~~~l~~~l~~~----~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 598 YHKPQFAILDECTSAVSVDVEGYMYRLCREF----GITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 9999999999999999999999999988752 78999999999987 67999999963
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=309.52 Aligned_cols=234 Identities=26% Similarity=0.416 Sum_probs=199.6
Q ss_pred CeEEEEeEEEEeCCC--------CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH
Q 022337 62 PKFRVRELRKESDDG--------APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--------~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~ 133 (298)
+.++++|++|.|... ..+++.|||++++|+.+||||.||||||||.|+|+|+++|++|+|.+||+.+.-.+.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 468899999877421 258999999999999999999999999999999999999999999999998864443
Q ss_pred HHHhcceEEEeCCCCC-C-cc-cHHHHhHhCccccC-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPAL-F-EG-TVVDNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l-~-~~-tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
....++|-++||+|+- | |. .+.+-+..+++... .. ...+++.+-++++|+.++..+-++..||-||||||++||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 3344679999999972 3 43 66666666654322 11 234568889999999877889999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh-ccC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAK 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~-~~~ 286 (298)
||+.+|+|+|.||..++||..-+.++.++..++.++.|.+.|+|+.++..+..++|.|+||++|++++.|++.++. .+.
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~ 242 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPL 242 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988875 456
Q ss_pred ChHHHHHhh
Q 022337 287 HPMALRFLQ 295 (298)
Q Consensus 287 ~~~~~~~~~ 295 (298)
++..+.+.+
T Consensus 243 ~~~TkRlie 251 (267)
T COG4167 243 HELTKRLIE 251 (267)
T ss_pred cHHHHHHHH
Confidence 776665543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=367.05 Aligned_cols=203 Identities=24% Similarity=0.351 Sum_probs=176.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++|+++|+++.|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++. .+
T Consensus 309 ~~~~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 376 (638)
T PRK10636 309 PNPLLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IK 376 (638)
T ss_pred CCceEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EE
Confidence 456899999999995 567999999999999999999999999999999999999999999999641 25
Q ss_pred eEEEeCCC--CCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIP--ALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||++|++ .+.+ .|+.+++.... .....+++.++++.+++..+..++++.+|||||||||+|||+|+.+|++|
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL 452 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARLA----PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL 452 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHhC----chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999975 3444 38888764211 11234568899999999644678999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 282 (298)
||||||++||+.++..+.+.|.++ . | |||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 453 lLDEPt~~LD~~~~~~l~~~L~~~--~-g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 453 LLDEPTNHLDLDMRQALTEALIDF--E-G-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHc--C-C-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 999999999999999999999987 2 5 9999999999999999999999999997 67887776
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=322.78 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=188.8
Q ss_pred CCCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHh
Q 022337 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLR 137 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~ 137 (298)
..++.|+++|++.+| +++++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+.....+. .++|
T Consensus 27 ~~~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 27 INEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred CCcceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 345679999999999 47899999999999999999999999999999999999999999999999999876555 7899
Q ss_pred cceEEEeCCCC--CCc-ccHHHHhHhCcc----ccCCC---ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 138 RKVGMLFQIPA--LFE-GTVVDNIRYGPQ----LRGKK---LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 138 ~~ig~v~Q~~~--l~~-~tv~eni~~~~~----~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
++||+|.-.-. +.+ .+++|-+.-+.. ++... ...+++..+++.+|+. ++.+++..+||-||||||.|||
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~-~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK-HLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh-hhccCchhhcCHhHHHHHHHHH
Confidence 99999975432 233 388888875532 11111 1235678899999996 6899999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK-HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~-~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
||+.+|++|||||||+|||..+++.+.+.|.+++.. .+.++|+|||..+++....++++.+++|+++..|.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999998743 36789999999999999999999999999998763
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=367.88 Aligned_cols=205 Identities=24% Similarity=0.305 Sum_probs=172.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +.++
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 46899999999995445699999999999999999999999999999999999999999999864 2369
Q ss_pred EEEeCCCCCCcccHHHHhHhCc-cccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALFEGTVVDNIRYGP-QLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||++|++. ...++.+|..+.. ... ....++++.++++.+++.....++++.+|||||||||+|||||+.+|++||||
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~-~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLD 652 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD 652 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhc-CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999862 2234544533211 111 11235678899999999644678899999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 282 (298)
|||++||+.+++.+.+.|.++ + | |||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 653 EPT~~LD~~s~~~l~~~L~~~--~-g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 653 EPSNHLDLDAVEALIQGLVLF--Q-G-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCCCCCHHHHHHHHHHHHHc--C-C-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999988765 2 4 9999999999999999999999999998 56766554
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=386.43 Aligned_cols=203 Identities=27% Similarity=0.429 Sum_probs=174.1
Q ss_pred eEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 702 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVA 702 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEE
Confidence 69999999999643 4799999999999999999999999999999999999999999999987 499
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|++|+|.+++.|++|||.++... ++++..++++.+++.+ ...++++.+||||||||++||||++.
T Consensus 703 yv~Q~~~l~~~Ti~eNI~~g~~~-----~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~ 777 (1522)
T TIGR00957 703 YVPQQAWIQNDSLRENILFGKAL-----NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 777 (1522)
T ss_pred EEcCCccccCCcHHHHhhcCCcc-----CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999997432 2233344444333321 23456788999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLK-KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~-~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|+++|||||||+||+.+++.+++.+.+.. ...++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHh
Confidence 999999999999999999999999997531 1237999999999999865 99999999999999999988754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=364.28 Aligned_cols=202 Identities=29% Similarity=0.410 Sum_probs=178.2
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG 152 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~ 152 (298)
++++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.+||.++. ...+++.+||++|++.+++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 467999999999999999999999999999999999999885 899999999874 24567889999999998875
Q ss_pred -cHHHHhHhCccccCC---C--ccHHHHHHHHHHcCCCchhhcCCCC------CCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 153 -TVVDNIRYGPQLRGK---K--LTENEVYKLLSLADLDSSFLNKTGG------EISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 153 -tv~eni~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||+||+.|+...+.. . ..+++++++++.+|+. +..+..++ .|||||||||+|||||+.+|++++|||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 999999987644321 1 1234588999999996 45666665 599999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||+|||+.++..+++.|++++++ |+|+|+++|+++ .+.++||++++|++|++++.|+++++
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 99999999999999999999764 999999999995 78889999999999999999998875
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=361.99 Aligned_cols=204 Identities=22% Similarity=0.273 Sum_probs=167.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+++||+++|+ ++.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++|
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 589999999994 5689999999999999999999999999999999999999999999998742 3677
Q ss_pred EeCCCCCCcccHHHHhHhCc-----------------------ccc------CCCccHHHHHHHHHHcCCCchhhcCCCC
Q 022337 143 LFQIPALFEGTVVDNIRYGP-----------------------QLR------GKKLTENEVYKLLSLADLDSSFLNKTGG 193 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~-----------------------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 193 (298)
++|++..+..++.+++.... ... +....+.++.++++.+|+..+..++++.
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 77754333234333322100 000 0011235688899999996345788999
Q ss_pred CCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 194 ~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||.+++..+||++++|++|++
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999998875 46999999999999999999999999999
Q ss_pred EE-eeChhhh
Q 022337 274 VE-VLKPDLL 282 (298)
Q Consensus 274 ~~-~g~~~~~ 282 (298)
+. .|+.+.+
T Consensus 225 ~~~~g~~~~~ 234 (638)
T PRK10636 225 FEYTGNYSSF 234 (638)
T ss_pred EEecCCHHHH
Confidence 64 5666554
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=297.34 Aligned_cols=144 Identities=35% Similarity=0.547 Sum_probs=135.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ +.++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ +.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYG-GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYF 68 (144)
T ss_pred CEEEEEEEEEC-CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEE
Confidence 47899999995 457999999999999999999999999999999999999999999999984 368999
Q ss_pred eCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC
Q 022337 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS 223 (298)
Q Consensus 144 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts 223 (298)
|| ||+||+||++|||||+.+|+++||||||+
T Consensus 69 ~~-------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 69 EQ-------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred cc-------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 98 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 224 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 224 ~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
+||+.++..+.+.|+++ +.|+|++||+++.+..+||++++|++|+
T Consensus 100 ~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 100 HLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999876 4699999999999999999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=311.04 Aligned_cols=216 Identities=29% Similarity=0.427 Sum_probs=185.7
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
|+++.|+.+.|..+ +++|+++|++|++|+++.|+|.||||||||++.|+|-+.|++|+|.|+|.++.+++......
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 46677787777544 46999999999999999999999999999999999999999999999999999998877777
Q ss_pred ceEEEeCCCC--CCc-ccHHHHhHhCccc---cCCCc-----cHHHHHHHHHHcC--CCchhhcCCCCCCChhHHHHHHH
Q 022337 139 KVGMLFQIPA--LFE-GTVVDNIRYGPQL---RGKKL-----TENEVYKLLSLAD--LDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 139 ~ig~v~Q~~~--l~~-~tv~eni~~~~~~---~~~~~-----~~~~~~~~l~~~~--l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
.++-|||+|. .++ .|+.||+.+.... ++... ..+...+.+..++ ++ ..++.+..-|||||||-+++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe-nrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE-NRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh-hhhcChhhhccchHHHHHHH
Confidence 8999999995 455 5999999986321 11111 1233455566654 44 46778899999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
+.|-++.|+||+|||-|++|||+....+++.=.++.++.+.|.+||||.|+.+.+|.+|.++|++|+|+.+-+.
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g 233 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTG 233 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccc
Confidence 99999999999999999999999999999999999888899999999999999999999999999999987543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=386.39 Aligned_cols=214 Identities=27% Similarity=0.411 Sum_probs=185.2
Q ss_pred CeEEEEeEEEEeC---CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHH
Q 022337 62 PKFRVRELRKESD---DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE---PPSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 62 ~~l~~~~l~~~y~---~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~---p~~G~I~i~g~~i~~~~~~~ 135 (298)
.+++++||++.|+ +++.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++.. .
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----~ 833 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----S 833 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh----h
Confidence 3589999999984 23579999999999999999999999999999999999998 789999999999742 4
Q ss_pred HhcceEEEeCCCCCCc-ccHHHHhHhCccccC---CC--ccHHHHHHHHHHcCCCchhhcCCCC----CCChhHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFE-GTVVDNIRYGPQLRG---KK--LTENEVYKLLSLADLDSSFLNKTGG----EISVGQAQRVAL 205 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkQRv~i 205 (298)
+++.+|||+|++.+++ .||+||+.++...+. .. ...++++++++.+++. +..++.++ .||||||||++|
T Consensus 834 ~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~I 912 (1394)
T TIGR00956 834 FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVEQRKRLTI 912 (1394)
T ss_pred hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHH
Confidence 6788999999987766 599999998754332 11 1234578999999996 56777776 799999999999
Q ss_pred HHHHcCCCC-eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHH-HHhhcCEEEEEeCC-EEEEeeChhh
Q 022337 206 ARTLANEPE-VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-IQRIADVVCLLVNG-EIVEVLKPDL 281 (298)
Q Consensus 206 Aral~~~p~-illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~-~~~~~d~v~vl~~G-~i~~~g~~~~ 281 (298)
||||+.+|+ +|+|||||+|||+.++..+++.|++++++ |+|||+++|+++. +.+.||++++|++| ++++.|++.+
T Consensus 913 a~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 913 GVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 999999997 99999999999999999999999999764 9999999999986 45679999999997 9999998743
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=306.77 Aligned_cols=217 Identities=29% Similarity=0.445 Sum_probs=191.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHH-hc
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLDGRDITDLDVLSL-RR 138 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~g~~i~~~~~~~~-~~ 138 (298)
.+++++||+.+-.+.+.+|+++||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|+||..+++.+. |.
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47999999999853358999999999999999999999999999999999985 7899999999999999988765 56
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCccccCC-----CccHHHHHHHHHHcCCCchhhcCCCC-CCChhHHHHHHHHHHHcC
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGK-----KLTENEVYKLLSLADLDSSFLNKTGG-EISVGQAQRVALARTLAN 211 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkQRv~iAral~~ 211 (298)
.+...||.|.=+++ ++.+.+..+...... ....+++.+.++.+++++.+++|++. .+|||||+|..|+.+++.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l 161 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL 161 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence 69999999988887 999999876432111 12346688899999998778888876 599999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc--CEEEEEeCCEEEEeeChh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA--DVVCLLVNGEIVEVLKPD 280 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~--d~v~vl~~G~i~~~g~~~ 280 (298)
+|++.|||||-||||..+-+.+.+.+.++..+ |.++++|||.-..+. +. |+|.+|.+|+|+..|.++
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~rll~-~i~pD~vhvl~~GrIv~sG~~e 230 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQRLLD-YIKPDKVHVLYDGRIVKSGDPE 230 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHHHHHh-hcCCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999765 999999999987664 55 999999999999999994
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=305.95 Aligned_cols=166 Identities=23% Similarity=0.272 Sum_probs=143.4
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCC
Q 022337 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI 146 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~ 146 (298)
.|++++|+ ++.++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++|+
T Consensus 4 ~~l~~~~~-~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYG-VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQY 69 (177)
T ss_pred CCeEEEEC-CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEccc
Confidence 58899995 5678988 49999999999999999999999999999999999999999853 7888885
Q ss_pred CCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCC
Q 022337 147 PALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226 (298)
Q Consensus 147 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD 226 (298)
+. ||||||||++|||||+.+|+++||||||++||
T Consensus 70 ~~----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 70 ID----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred CC----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 42 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe--eChhhhhccCChHHHH
Q 022337 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV--LKPDLLSEAKHPMALR 292 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~--g~~~~~~~~~~~~~~~ 292 (298)
+.+++.+.+.+.+++++.+.|+|++|||++.+..+||++++|+++-.+.. |.|....++.+.+...
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRG 171 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhHHHHHHHHh
Confidence 99999999999998765348999999999999999999999998866533 5555444433333333
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=369.72 Aligned_cols=221 Identities=31% Similarity=0.522 Sum_probs=198.4
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
...|+++|++.+|..+ ..||+||||+|++||.+||||+.|||||||+++|.++..|.+|+|.|||.|+.++...++|++
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence 4469999999999765 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchh----------hcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkQRv~iAral 209 (298)
++++||+|.+|++|+|.|+.=. ...+++++.++|+.++|.+.. ..+.+.++|-||||.+++||||
T Consensus 1216 lsIIPQdPvLFsGTvR~NLDPf-----~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFSGTVRFNLDPF-----DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred CeeeCCCCceecCccccccCcc-----cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 9999999999999999999611 123577889999988875321 2233578999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
+++++||+|||+||+.|+.+-..+.+.|++--+ ++|||.|.|+++.+.+ ||||+||++|+++|.++|.++.+..+..
T Consensus 1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~~~~S~ 1367 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSDKDSL 1367 (1381)
T ss_pred hccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHhCCcch
Confidence 999999999999999999999999999998765 7999999999999987 8999999999999999999998765543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=376.64 Aligned_cols=187 Identities=28% Similarity=0.464 Sum_probs=160.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDN 157 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~en 157 (298)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++.+|+.|++||
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eN 506 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDN 506 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHH
Confidence 589999999999999999999999999999999999999999999987 3999999999999999999
Q ss_pred hHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCH
Q 022337 158 IRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227 (298)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~ 227 (298)
|.|+... +.++..++++.+++.+ ...++++.+|||||||||+||||++.+|+++||||||++||+
T Consensus 507 I~~g~~~-----~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 507 IIFGLSY-----DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred HHhcccc-----chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 9998532 1122223333333211 134566889999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 228 ISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 228 ~~~~~~~~~-l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
.+++.+++. +.++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 582 ~~~~~i~~~~l~~~~~--~~tvilvtH~~~~~~-~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 582 VTEKEIFESCLCKLMS--NKTRILVTSKLEHLK-KADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHHHHHHHHhc--CCeEEEEeCChHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999985 666643 899999999999986 5999999999999999999887643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=318.80 Aligned_cols=205 Identities=30% Similarity=0.442 Sum_probs=175.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe-CCCCCCc-ccHH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF-QIPALFE-GTVV 155 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~-Q~~~l~~-~tv~ 155 (298)
++++|+||+|++|++++++|||||||||++|+|+|++.|++|.|.++|.+..+ +.+++-+++++|+ |...++. ..+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 58999999999999999999999999999999999999999999999998654 3445566788875 4444543 3555
Q ss_pred HHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHH
Q 022337 156 DNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233 (298)
Q Consensus 156 eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~ 233 (298)
|-+.....++..+. -.++...+.+.++++ .+.+.+++.||-|||.|+.||.||+++|+||+|||||-|||..++..+
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLE-GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 55544322333322 246677888999997 578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 234 EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 234 ~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+.|++++++++.||+++||+++.+..+||||+.|+.|+++.+|+.+++.+
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 999999999999999999999999999999999999999999999877644
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=295.90 Aligned_cols=232 Identities=28% Similarity=0.446 Sum_probs=192.8
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE-----eCCCCCHH
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR-----DITDLDVL 134 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~-----~i~~~~~~ 134 (298)
..|.++++++++.|+ .....+|+||++.|||+.+|+|+||||||||++||++-+.|+.|+|.+.-. ++..++..
T Consensus 3 ~~PLL~V~~lsk~Yg-~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 3 DKPLLSVSGLSKLYG-PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred CCcceeehhhhhhhC-CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence 356899999999995 456899999999999999999999999999999999999999999999653 23233322
Q ss_pred HH----hcceEEEeCCCC--CCc-----ccHHHHhH-hCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHH
Q 022337 135 SL----RRKVGMLFQIPA--LFE-----GTVVDNIR-YGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR 202 (298)
Q Consensus 135 ~~----~~~ig~v~Q~~~--l~~-----~tv~eni~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQR 202 (298)
+. |-.-|+|.|+|. +-. .++-|-++ .+.+.++ ..++.+.++++.+.++....|..|.++||||+||
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG--~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG--NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh--hHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence 22 345899999995 211 13444333 3333332 2356688899999998777888999999999999
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+.|||-|+..|+++++||||.|||...+.+++++++.+..+.|.+++++|||+..+.-++||.++|++|++++.|-.+.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred h-ccCChHHHHHh
Q 022337 283 S-EAKHPMALRFL 294 (298)
Q Consensus 283 ~-~~~~~~~~~~~ 294 (298)
. ++.|+|...+.
T Consensus 240 LDDP~hPYTQLLV 252 (258)
T COG4107 240 LDDPHHPYTQLLV 252 (258)
T ss_pred ccCCCCchHHHHH
Confidence 5 45677766544
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=292.51 Aligned_cols=156 Identities=43% Similarity=0.714 Sum_probs=145.9
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeC
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q 145 (298)
++|+++.|+ ++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.......+++.++|+||
T Consensus 2 ~~~~~~~~~-~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYG-GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 679999995 4579999999999999999999999999999999999999999999999998876555566788999999
Q ss_pred CCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC
Q 022337 146 IPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225 (298)
Q Consensus 146 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L 225 (298)
||+||+||++||||++.+|++++|||||++|
T Consensus 81 -------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~l 111 (157)
T cd00267 81 -------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 226 D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
|+.++..+.+.+.++.++ ++|++++||+++.+..+||+++++++|+
T Consensus 112 D~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 112 DPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999998765 7999999999999999999999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=351.98 Aligned_cols=202 Identities=28% Similarity=0.344 Sum_probs=164.1
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+|+++|++++|+ ++.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++
T Consensus 2 ~~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 2 SLISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred cEEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 3799999999995 5689999999999999999999999999999999999999999999998631 145
Q ss_pred EEeCCCCCCc-ccHHHHh------------------------------HhCccc------cCCCccHHHHHHHHHHcCCC
Q 022337 142 MLFQIPALFE-GTVVDNI------------------------------RYGPQL------RGKKLTENEVYKLLSLADLD 184 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni------------------------------~~~~~~------~~~~~~~~~~~~~l~~~~l~ 184 (298)
+++|.+.... .++.+++ .+.... ........++.++++.+|+.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 5555432111 2333332 111000 00011245678899999995
Q ss_pred chhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 185 ~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
.++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||.+++..+||+
T Consensus 150 ---~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 150 ---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred ---CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCe
Confidence 27889999999999999999999999999999999999999999999999987 24999999999999999999
Q ss_pred EEEEeCCEEEE-eeChhhh
Q 022337 265 VCLLVNGEIVE-VLKPDLL 282 (298)
Q Consensus 265 v~vl~~G~i~~-~g~~~~~ 282 (298)
|++|++|+++. .|+.+++
T Consensus 223 i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEEECCEEEEecCCHHHH
Confidence 99999999974 5776654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=374.77 Aligned_cols=213 Identities=23% Similarity=0.290 Sum_probs=182.7
Q ss_pred eEEEEeEEEEeC------------CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeC
Q 022337 63 KFRVRELRKESD------------DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDI 128 (298)
Q Consensus 63 ~l~~~~l~~~y~------------~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i 128 (298)
.+..+||++..+ +++.+|+|+|+++++|+++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999998763 123699999999999999999999999999999999999874 789999999875
Q ss_pred CCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccC---CC--ccHHHHHHHHHHcCCCchhhcCCC-----CCCCh
Q 022337 129 TDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG---KK--LTENEVYKLLSLADLDSSFLNKTG-----GEISV 197 (298)
Q Consensus 129 ~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 197 (298)
.. ...++.+||++|++.+++. ||+||+.|+...+. .. ...++++++++.++|. +..++.+ ..|||
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCH
Confidence 42 3456789999999988874 99999998753321 11 1124578999999996 5677765 58999
Q ss_pred hHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeC-CEEEE
Q 022337 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVN-GEIVE 275 (298)
Q Consensus 198 GqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~-G~i~~ 275 (298)
||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ .+...||++++|++ |+++.
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~ 1101 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEE
Confidence 9999999999999999999999999999999999999999999765 999999999998 47789999999996 89999
Q ss_pred eeChh
Q 022337 276 VLKPD 280 (298)
Q Consensus 276 ~g~~~ 280 (298)
.|++.
T Consensus 1102 ~G~~~ 1106 (1470)
T PLN03140 1102 SGPLG 1106 (1470)
T ss_pred ECCcc
Confidence 99864
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=351.14 Aligned_cols=192 Identities=26% Similarity=0.360 Sum_probs=164.2
Q ss_pred EEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEE-----------ECCEeCCCCCHH--H
Q 022337 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-----------LDGRDITDLDVL--S 135 (298)
Q Consensus 69 l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~-----------i~g~~i~~~~~~--~ 135 (298)
++++|+++..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|+++..+... .
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~ 157 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhc
Confidence 7899964456999999 8999999999999999999999999999999999997 899887543211 1
Q ss_pred HhcceEEEeC----CCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 136 LRRKVGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 136 ~~~~ig~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
.+.++++.+| .|.+|..||.||+.+. ...+++.++++.+++. +..++++.+|||||||||+||+||+.
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~-------~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFKGKVRELLKKV-------DERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred cCcceeecccchhhhhhhhcchHHHHHHhh-------hHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 1223555555 4445556999998742 1345688999999996 57899999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
+|++|||||||++||+.++..+.+.|+++++ |+|||+||||++.+..+||++++|+++
T Consensus 230 ~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999964 899999999999999999999999873
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=301.06 Aligned_cols=195 Identities=30% Similarity=0.398 Sum_probs=170.6
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
.++|+||||++++||.+||||+||||||||+|+|+|.++|++|+|.++|+--.-+ --..|+-| +.|.+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li-----~lg~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLI-----ELGAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhh-----hcccCCCc------ccchHH
Confidence 4699999999999999999999999999999999999999999999999642111 11223322 259999
Q ss_pred HhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHH
Q 022337 157 NIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234 (298)
Q Consensus 157 ni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~ 234 (298)
|+.+...+.+.. +.+++++++.+..+|. ++.+.++.++|.||+-|+++|-|...+|+|||+||-.+..|+.-++.-.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 999876555543 3356788899999995 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 235 ~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+.+.++.++ ++|||+||||++.+.++|||+++|++|+++..|+++++.+
T Consensus 188 ~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 188 ERLNELVEK-NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHc-CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 999999665 7999999999999999999999999999999999998755
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=370.96 Aligned_cols=204 Identities=19% Similarity=0.186 Sum_probs=174.4
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC----CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW----EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG 152 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~----~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~ 152 (298)
+++|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++.+.+ ...|+.++|++|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999996 579999999999875432 2346679999999988875
Q ss_pred -cHHHHhHhCccccC-------CCcc--HHH-HHHHHHHcCCCchhhcC-----CCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 153 -TVVDNIRYGPQLRG-------KKLT--ENE-VYKLLSLADLDSSFLNK-----TGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 153 -tv~eni~~~~~~~~-------~~~~--~~~-~~~~l~~~~l~~~~~~~-----~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
||+||+.|+...+. .... .++ ++++++.+||. +..++ .+..|||||||||+||+||+.+|+++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-cccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 99999998754321 1111 122 35678999996 44554 45789999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH-HHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~-~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+|||||+|||+.++..+++.|++++++.|+|+|+++|++ +.+.+++|++++|++|+++..|+++++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 999999999999999999999999876689999999996 688899999999999999999998765
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=291.16 Aligned_cols=157 Identities=28% Similarity=0.345 Sum_probs=135.9
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
.++|+|+||+|++|++++|+||||||||||||++. +++|+|.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 47999999999999999999999999999999985 479999998762 111 1345788877
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC--CCeEEEeCcCCCCCHHHHHHHH
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE--PEVLLLDEPTSALDPISTQNIE 234 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~--p~illLDEPts~LD~~~~~~~~ 234 (298)
.++++.+++.....++++.+||||||||++|||||+.+ |+++||||||++||+.+++.+.
T Consensus 68 ------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~ 129 (176)
T cd03238 68 ------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL 129 (176)
T ss_pred ------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 24678888853236888999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 235 ~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
+.|+++++ .|.|||++||+++.+ ..||++++|++|+.
T Consensus 130 ~~l~~~~~-~g~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 130 EVIKGLID-LGNTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 99999865 499999999999987 57999999977654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=280.91 Aligned_cols=200 Identities=30% Similarity=0.472 Sum_probs=174.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
++.++||+.+-+ +...|.++||+|.+||++.|+||||||||||+.-+.|.+.++ +|+++++++++...+ .-+|+
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP--a~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP--AAQRQ 78 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc--hhhhh
Confidence 578999998874 678999999999999999999999999999999999999885 799999999997765 34789
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcc--ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQ--LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|++||++.+||. +|.+|+.|... .++. ..+..+..++++.|++ ...++.|.+||||||-||++-|+|+..|+.+
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~-aRr~~a~aAL~~~gL~-g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l 156 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGN-ARRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALLAQPKAL 156 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccH-HHHhhHHHHHHHhccc-hhhhcChhhcCcchHHHHHHHHHHHhCccee
Confidence 9999999999996 99999998753 3332 2345578899999997 4789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
+||||+|.||...+.++.+....-.+..|..+|+||||...+. ...||+-|
T Consensus 157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 9999999999999999999987666667999999999999886 34555443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=345.54 Aligned_cols=217 Identities=22% Similarity=0.263 Sum_probs=170.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC---CCCccEEEECCEeCCCC--CH--
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW---EPPSGTVFLDGRDITDL--DV-- 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~---~p~~G~I~i~g~~i~~~--~~-- 133 (298)
..+|+++|++++|+ ++.+|+|+||+|.+|+++|||||||||||||||+|+|.. .|++|+|.+.++++... +.
T Consensus 175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 44799999999995 567999999999999999999999999999999999964 68999998766543211 11
Q ss_pred ----------HHHhcceEEEeCCCCCCcccHHHHhHhCcc--------------------ccCCCccHHHHHHHHHHcCC
Q 022337 134 ----------LSLRRKVGMLFQIPALFEGTVVDNIRYGPQ--------------------LRGKKLTENEVYKLLSLADL 183 (298)
Q Consensus 134 ----------~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~--------------------~~~~~~~~~~~~~~l~~~~l 183 (298)
..+++.+++++|++.+...++.+|...... ..+....++++.+++..+|+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 012345788888765432222222111000 00011234567788899999
Q ss_pred CchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 184 ~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
..+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|+|+||||.+.+..+||
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCC
Confidence 645678899999999999999999999999999999999999999999999999876 6799999999999999999
Q ss_pred EEEEEeCCEEE-EeeChhhh
Q 022337 264 VVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 264 ~v~vl~~G~i~-~~g~~~~~ 282 (298)
++++|++|++. ..|+.+.+
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEEECCEEEEeCCCHHHH
Confidence 99999999996 56766544
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=367.36 Aligned_cols=203 Identities=25% Similarity=0.291 Sum_probs=174.8
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-c
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-G 152 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~ 152 (298)
+.+|+|+|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.+||+++.+.. .++.++|++|++.+++ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 46999999999999999999999999999999999999998 999999999885432 2678999999998887 4
Q ss_pred cHHHHhHhCccccCC----------CccH--------------------------HHHHHHHHHcCCCchhh-----cCC
Q 022337 153 TVVDNIRYGPQLRGK----------KLTE--------------------------NEVYKLLSLADLDSSFL-----NKT 191 (298)
Q Consensus 153 tv~eni~~~~~~~~~----------~~~~--------------------------~~~~~~l~~~~l~~~~~-----~~~ 191 (298)
||+||+.|+...++. ...+ ..++++++.+||+ +.. ++.
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~-~~~~t~vg~~~ 333 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLD-ICKDTIVGDEM 333 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCc-cccCceeCCcc
Confidence 999999987543210 0000 1245688999996 333 556
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH-HHHHhhcCEEEEEeC
Q 022337 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVN 270 (298)
Q Consensus 192 ~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~-~~~~~~~d~v~vl~~ 270 (298)
++.|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|+|+++|++ +++.++||+|++|++
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC
Confidence 7899999999999999999999999999999999999999999999999875689999999996 578899999999999
Q ss_pred CEEEEeeChhhhh
Q 022337 271 GEIVEVLKPDLLS 283 (298)
Q Consensus 271 G~i~~~g~~~~~~ 283 (298)
|+++..|+++++.
T Consensus 414 G~ivy~G~~~~~~ 426 (1470)
T PLN03140 414 GQIVYQGPRDHIL 426 (1470)
T ss_pred ceEEEeCCHHHHH
Confidence 9999999987653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=357.57 Aligned_cols=187 Identities=28% Similarity=0.388 Sum_probs=158.3
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ ++|||++|++.+++.|++|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHH
Confidence 469999999999999999999999999999999999999999999762 4699999999999899999
Q ss_pred HhHhCccccCCCccHHHHHH---------HHHHc--CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC
Q 022337 157 NIRYGPQLRGKKLTENEVYK---------LLSLA--DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L 225 (298)
||.++... +.++..+ .++.+ |++ ...++++.+|||||||||+|||||+.+|+++||||||++|
T Consensus 740 nI~~~~~~-----~~~~~~~~~~~~~l~~~l~~l~~g~~-t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saL 813 (1560)
T PTZ00243 740 NILFFDEE-----DAARLADAVRVSQLEADLAQLGGGLE-TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHcCChh-----hHHHHHHHHHHhhhHHHHHHhhccch-HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 99986421 1222222 33333 554 4567889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 226 D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|+..++.+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 814 D~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 814 DAHVGERVVEECFLGAL-AGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred CHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHh
Confidence 99999988875432222 3899999999999985 699999999999999999888754
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=345.26 Aligned_cols=205 Identities=31% Similarity=0.474 Sum_probs=181.0
Q ss_pred CCCeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 60 QKPKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
.++.++++|.++..++ ..+.|+||||+|++|+.+||+||-|||||+||..|+|-++..+|+|.++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-----------
Confidence 4557999999999864 235999999999999999999999999999999999999999999999884
Q ss_pred cceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHH
Q 022337 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAr 207 (298)
++|++|.|.++++||+|||.||. +.++++.++.++.+.|+++ ...+++-+|||||||||++||
T Consensus 584 --iaYv~Q~pWI~ngTvreNILFG~-----~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLAR 656 (1381)
T KOG0054|consen 584 --VAYVPQQPWIQNGTVRENILFGS-----PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLAR 656 (1381)
T ss_pred --EEEeccccHhhCCcHHHhhhcCc-----cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHH
Confidence 89999999999999999999985 3456778888888877543 245678899999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|++++++|+|||.|+|++|....+++++...+-.- +++|+|+|||.+..+. .||.|++|++|+|.+.|+.+++.+
T Consensus 657 AVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 657 AVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLP-HADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhh-hCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999999999999999998887654333 3899999999999885 599999999999999999998864
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=324.75 Aligned_cols=203 Identities=32% Similarity=0.398 Sum_probs=174.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+|+++|+++.| +++.+|+++||+|.+|+.+||||+||||||||||+|+|...|++|+|...+. -+++
T Consensus 2 ~~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 2 SMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred ceEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 479999999999 5788999999999999999999999999999999999999999999987541 2599
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccc-cCC-------------------------------CccHHHHHHHHHHcCCCchhh
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQL-RGK-------------------------------KLTENEVYKLLSLADLDSSFL 188 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~-~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~ 188 (298)
|++|++.+.+. ||.+.+..+..- ... ...+.++..++..+|+.. .
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~-~- 147 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD-E- 147 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc-c-
Confidence 99999998875 999988765320 000 001245667788888864 3
Q ss_pred cCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
+++..+||||||.||+||+||+.+|++|||||||++||..+..-+-+.|+++ .| |+|+||||-.++.+.|++|+.+
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 8899999999999999999999999999999999999999999999999876 27 9999999999999999999999
Q ss_pred eCCEEEE-eeChhhh
Q 022337 269 VNGEIVE-VLKPDLL 282 (298)
Q Consensus 269 ~~G~i~~-~g~~~~~ 282 (298)
+.|++.. .|..+.+
T Consensus 224 d~g~l~~y~Gny~~~ 238 (530)
T COG0488 224 DRGKLTPYKGNYSSY 238 (530)
T ss_pred cCCceeEecCCHHHH
Confidence 9998864 4555544
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=328.81 Aligned_cols=215 Identities=34% Similarity=0.500 Sum_probs=189.5
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC---CccEEEECCEeCCCCCHHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP---PSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p---~~G~I~i~g~~i~~~~~~~ 135 (298)
.+..++++....+. +.+|+|||.++++||+.||+|||||||||||++|+|.... .+|+|.+||+.. +.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhh
Confidence 47888888776543 5799999999999999999999999999999999999975 789999999654 3456
Q ss_pred HhcceEEEeCCCCCCcc-cHHHHhHhCccccCC-----CccHHHHHHHHHHcCCCchhhcCCCC-----CCChhHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK-----KLTENEVYKLLSLADLDSSFLNKTGG-----EISVGQAQRVA 204 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkQRv~ 204 (298)
+++..|||.|+..+++. ||+|++.|.+.++-. ...+++++++++.+|+. +..|..++ .+|||||+||+
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHH
Confidence 78899999999999985 999999998654322 12356799999999996 56777765 59999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||.-|+++|.||+|||||+|||..+..++++.|++++++ |+|||++-|.+. .+.++.|++++|.+|+++..|++++.
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPREL 258 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHH
Confidence 999999999999999999999999999999999999987 999999999995 67888999999999999999998764
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=340.79 Aligned_cols=221 Identities=29% Similarity=0.521 Sum_probs=199.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC-CHHHHhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL-DVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~-~~~~~~~~i 140 (298)
..+.++|+++.|+..+.+++++||.|++||+.|+.|+|||||||++|+|.|..+|++|+++++|.++... +..+.++.+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4689999999996433399999999999999999999999999999999999999999999999998653 233478899
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
||.||...+++. |.+|.+.+.++.+|.+. -.+.++.+++.+++. +..++..+.+|||+|+|+++|.|++.+|++++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~-~~~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG-PYANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh-hhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 999999999985 99999999888777543 234588899999997 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|+||.+++.+++++.++.++ |+++|++||.|++++.+|||+.+|.+|++...|++.++..
T Consensus 722 LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 722 LDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999999999999764 6699999999999999999999999999999999988753
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=277.79 Aligned_cols=191 Identities=25% Similarity=0.425 Sum_probs=167.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++.+|++... ++..++.++||++.+||++-|.||||||||||||+|+|+.+|++|+|+++|.++.... +.+++.+-|
T Consensus 2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 57788999876 5678999999999999999999999999999999999999999999999999887543 345677788
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
+--.+.+=+ .|+.||+.|...+++. ...+.+.++++.+||. .+.|.++++||-|||+||+|||-++..++++|||||
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~-~~~~~i~~Al~~vgL~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGS-GNAATIWEALAQVGLA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCC-CchhhHHHHHHHcCcc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 877776654 5999999997665543 3456789999999997 588999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
|++||+.....+-.++..-+.+ |-.||.+||..-.+
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~~ 193 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLPI 193 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhcC-CCEEEEecCCccCC
Confidence 9999999999999999887765 77899999997654
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=272.57 Aligned_cols=207 Identities=26% Similarity=0.405 Sum_probs=173.7
Q ss_pred eEEEEeEEEEeC----CCC--cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE----eCCCCC
Q 022337 63 KFRVRELRKESD----DGA--PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR----DITDLD 132 (298)
Q Consensus 63 ~l~~~~l~~~y~----~~~--~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~----~i~~~~ 132 (298)
.+.++|++|+|- ++. ++++++||+++.|||+++-||||||||||||+|.|-|.|++|+|++.-. |+-...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 588999998872 332 7999999999999999999999999999999999999999999999533 222222
Q ss_pred HH---HH-hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 133 VL---SL-RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 133 ~~---~~-~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
+. +. |+.||||.|--...|. +..|.++-++.-.+.+. ..+++..++.++++++.+..-.|.++||||||||.|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI 163 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence 22 33 4569999997766665 77777776654444433 345688899999999878888999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
||.++.+-+||||||||++||..+++.+.++|.+.+. .|.++|=|-||-+.=+..|||++-+..
T Consensus 164 aRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka-~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA-RGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhccCceEEecCCcccccccchHHHHHHHHHHHh-cCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999998754 599999999999988889999987754
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=282.89 Aligned_cols=195 Identities=28% Similarity=0.329 Sum_probs=139.4
Q ss_pred CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHH-HHHhcCCCCCccEEEECC-------EeC---CCCCHHHHh-cceEE
Q 022337 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLL-RALNRLWEPPSGTVFLDG-------RDI---TDLDVLSLR-RKVGM 142 (298)
Q Consensus 75 ~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLl-k~l~gl~~p~~G~I~i~g-------~~i---~~~~~~~~~-~~ig~ 142 (298)
.+.++|+++||+|++||++||+||||||||||+ ..+. .+|++.+.+ ..+ ........+ ...++
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 345799999999999999999999999999996 4443 134432210 000 000001111 23455
Q ss_pred EeCCCCC--Ccc-cHH---HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC--C
Q 022337 143 LFQIPAL--FEG-TVV---DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP--E 214 (298)
Q Consensus 143 v~Q~~~l--~~~-tv~---eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p--~ 214 (298)
..|++.. .+. ++. +...+........ ...+..+.++.+++.+...++++.+||||||||++|||||+.+| +
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~ 159 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLFARV-GIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGV 159 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCC
Confidence 5555432 222 433 2222211111111 12233578999999643478999999999999999999999998 5
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEee
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVL 277 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g 277 (298)
+|||||||++||+.++..+.+.|++++++ |.|+|++|||++.+ .+||++++| ++|+|+++|
T Consensus 160 llllDEPt~gLD~~~~~~l~~~l~~~~~~-g~tii~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 160 LYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999999999999999999999998654 89999999999987 589999999 999999875
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=306.67 Aligned_cols=204 Identities=31% Similarity=0.417 Sum_probs=177.3
Q ss_pred CCCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
...+.++++|+++.|++++.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-. -
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v 385 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------V 385 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------e
Confidence 34668999999999976578999999999999999999999999999999999999999999987421 2
Q ss_pred ceEEEeCCCC-CCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 139 KVGMLFQIPA-LFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 139 ~ig~v~Q~~~-l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++||..|+.. +++. |+.|++.-... ...+..++..|..+++..+...+++..||||||-|+.+|+.++.+|.+|
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~----~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvL 461 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFP----DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLL 461 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCc----cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEE
Confidence 5899999884 4454 99999975431 1125779999999999877788999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe-eChhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDLL 282 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~-g~~~~~ 282 (298)
||||||+.||..+...+.+.|.++ .-|||+||||..++.++|++++.+++ ++... |+.++.
T Consensus 462 iLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 462 LLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred EEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 999999999999999999999988 34999999999999999999999998 66544 555544
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=254.48 Aligned_cols=132 Identities=46% Similarity=0.792 Sum_probs=118.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHh
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNI 158 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni 158 (298)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....++.++|++|++.+++. |+.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999876666778899999999888875 89999
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCC----CCCChhHHHHHHHHHHHcCCCCeEEEeCcCC
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG----GEISVGQAQRVALARTLANEPEVLLLDEPTS 223 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~LSgGqkQRv~iAral~~~p~illLDEPts 223 (298)
...+++.++++.+++. ++.++.+ .+||+|||||++|||||+++|+++||||||+
T Consensus 80 ----------~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----------ESDERIEEVLKKLGLE-DLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------HHHHHHHHHHHHTTHG-GGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------cccccccccccccccc-cccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2345688888888875 3444444 9999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=264.29 Aligned_cols=164 Identities=21% Similarity=0.317 Sum_probs=136.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc---------cEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS---------GTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE 151 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~---------G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~ 151 (298)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.++|+++... ..+++++++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6799999999 999999999999999999999987653 4677777765431 2357899999999766
Q ss_pred ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCH
Q 022337 152 GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDP 227 (298)
Q Consensus 152 ~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~----~~p~illLDEPts~LD~ 227 (298)
|+.. ..+++.++++. . +..++.+.+||||||||++|||+++ .+|+++||||||++||+
T Consensus 89 --------~~~~------~~~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~ 150 (197)
T cd03278 89 --------YSII------SQGDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDD 150 (197)
T ss_pred --------eeEE------ehhhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCH
Confidence 2210 13456677777 2 3567889999999999999999997 56799999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 228 ~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
..+..+.+.|+++.+ +.|||++||+++.+ .+||+++.+..
T Consensus 151 ~~~~~l~~~l~~~~~--~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 151 ANVERFARLLKEFSK--ETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHHHhcc--CCEEEEEECCHHHH-hhcceEEEEEe
Confidence 999999999999854 68999999999987 58999998864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=268.00 Aligned_cols=196 Identities=29% Similarity=0.401 Sum_probs=151.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh-----c-CC----CCCcc-----------EEEECCEeCCCCCH---
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN-----R-LW----EPPSG-----------TVFLDGRDITDLDV--- 133 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~-----g-l~----~p~~G-----------~I~i~g~~i~~~~~--- 133 (298)
..|+|+|++|+.|.+++|.|+||||||||++.+. . +. .|..+ -|.+|..++..-+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999999662 1 11 12211 36677766643211
Q ss_pred H-------HHhc----------------ceEEEeCCCCCC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhc
Q 022337 134 L-------SLRR----------------KVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN 189 (298)
Q Consensus 134 ~-------~~~~----------------~ig~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 189 (298)
. ++|+ .+.|..++...+ ..|+.|++.|..... ..++..++++.+||.....+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~----~~~~~~~~L~~vgL~~l~l~ 164 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP----KIARKLQTLCDVGLGYIKLG 164 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh----hHHHHHHHHHHcCCchhhhc
Confidence 0 1111 134444444333 358888888754321 23567789999999632478
Q ss_pred CCCCCCChhHHHHHHHHHHHcCC---CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEE
Q 022337 190 KTGGEISVGQAQRVALARTLANE---PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~iAral~~~---p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~ 266 (298)
+++.+|||||+||++|||+|+.+ |+++||||||+|||+..++.+.+.|+++.++ |.|+|++||+++.+. .||+++
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~i~-~aD~ii 242 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIK-CADWII 242 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-hCCEEE
Confidence 99999999999999999999996 7999999999999999999999999998754 899999999999985 699999
Q ss_pred EE------eCCEEEEeeCh
Q 022337 267 LL------VNGEIVEVLKP 279 (298)
Q Consensus 267 vl------~~G~i~~~g~~ 279 (298)
+| ++|+|++.|++
T Consensus 243 ~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 243 DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EecCCcCCCCCEEEEeCCC
Confidence 99 89999998864
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=257.39 Aligned_cols=211 Identities=26% Similarity=0.389 Sum_probs=183.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++||+... -|-.+|.++..||++-+|||||||||||+-.++|+. |-+|+|.++|.++..++..++.++-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 57888887643 266799999999999999999999999999999997 689999999999998888888888899
Q ss_pred EeCCCC-CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC-----C--CC
Q 022337 143 LFQIPA-LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN-----E--PE 214 (298)
Q Consensus 143 v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~-----~--p~ 214 (298)
+.|+.. .|.+.|..++.+... .......+.++...++++ +.+.+..++|||||+|||-+|...++ + .+
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP---~~~~a~~i~~i~~~L~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~ 152 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQP---DKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQ 152 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCc---hHHHHHHHHHHHhhhccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCccce
Confidence 988765 566799999887531 112234577889999997 46889999999999999999998875 3 47
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+||+|||.++||...+..+..+|.+++.. |.+|||++||++.-.+.||+++.++.|++...|..+++..
T Consensus 153 LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 153 LLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred eEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 99999999999999999999999999975 9999999999999889999999999999999999888754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=281.85 Aligned_cols=217 Identities=25% Similarity=0.393 Sum_probs=185.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRR 138 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~ 138 (298)
..+.++++|++.. ..++|+||++++||++||.|-=|||+|-|+++|.|..++.+|+|.++|+++...++. ..+.
T Consensus 260 ~~~~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 260 GEPVLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred CCcEEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence 4567899998853 158899999999999999999999999999999999999999999999998766544 5678
Q ss_pred ceEEEeCCCC---CCc-ccHHHHhHhCcc--cc-C--CCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 139 KVGMLFQIPA---LFE-GTVVDNIRYGPQ--LR-G--KKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 139 ~ig~v~Q~~~---l~~-~tv~eni~~~~~--~~-~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.|+|||.|-. ++. .+|.+|+.++.. +. . .+. ..+.+.++.+.+++...-.+..+.+||||.||||.|||
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence 8999998763 565 599999988721 11 1 111 22346778888888643456789999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
.|+.+|++|||||||.|.|.-++.++++++++++++ |++||++|-++.++..+||||+||++|+|+..-+.+++
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~ 488 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELDREEA 488 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999876 99999999999999999999999999999987665554
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=267.31 Aligned_cols=205 Identities=31% Similarity=0.470 Sum_probs=175.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++++|+.|.|.....-+.-||++|++||++-|+|.||||||||+++|.|+++|++|+|++||+++...+++++|+-++-
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 59999999999765567889999999999999999999999999999999999999999999999998889999999999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc--hhhcC--CCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS--SFLNK--TGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~--~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||-|.++|+..+ +.. + ..+.+.+...++++.+.. .+.+. .+-.||.|||+|+++.-||+-+-+|+++
T Consensus 402 vFsDyhLF~~ll------~~e--~-~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 402 VFSDYHLFDQLL------GPE--G-KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HhhhHhhhHhhh------CCc--c-CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 999999987532 221 1 134556777777776631 12222 2457999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||=-+--||.-++.+++.+.-+.++.||||+.||||-..- ..|||++.+++|++++..
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT 530 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence 9999999999999999998887778899999999996554 579999999999998754
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=257.62 Aligned_cols=192 Identities=21% Similarity=0.275 Sum_probs=141.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEe-CCcEEEEEcCCCccHHHHHHHHhc-CCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIP-KGVIMGIIGPSGSGKSTLLRALNR-LWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~-~Ge~~~iiG~nGsGKSTLlk~l~g-l~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.|+++|+. .|.+. .+++|+.. +|++++|+||||||||||+++|++ ++-+..+....+ .....+.....+..|
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEE
Confidence 48889988 55432 56777654 589999999999999999999995 544555555433 111111222335679
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHH--HHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC-------
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYK--LLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN------- 211 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~------- 211 (298)
+++||++.... ++..+ .+. +.+.+.+ .++..++. ++.++++.+||+|||||++|||||+.
T Consensus 79 ~~~f~~~~~~~-~~~r~-------~gl--~~~~~~~~~~l~~g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~ 147 (213)
T cd03279 79 SFTFQLGGKKY-RVERS-------RGL--DYDQFTRIVLLPQGEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNR 147 (213)
T ss_pred EEEEEECCeEE-EEEEe-------cCC--CHHHHHHhhhhhhcchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhc
Confidence 99999874211 11111 122 2222222 24445564 57789999999999999999999985
Q ss_pred ---CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 212 ---EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 212 ---~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
+|+++||||||++||+.+++.+.+.|.+++++ +.|+|+|||+++.+..+||+++++++|.
T Consensus 148 ~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 148 GGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 67899999999999999999999999998654 8999999999999999999999999985
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=257.83 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=139.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh----------------cCCCCCcc--------
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN----------------RLWEPPSG-------- 119 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~----------------gl~~p~~G-------- 119 (298)
++++|.. +| ++..++++++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 4 i~~~nfk-sy-~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v 76 (243)
T cd03272 4 VIIQGFK-SY-KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYV 76 (243)
T ss_pred EEEeCcc-Cc-ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEE
Confidence 6677754 45 3567888887 8899999999999999999998 55666666
Q ss_pred EEEECCEeCC-CC--CHHHHhcceEEEeCCCCCCcc--cHHHHhHhCccccCCCc-------cHHHHHHHHHHcCCCchh
Q 022337 120 TVFLDGRDIT-DL--DVLSLRRKVGMLFQIPALFEG--TVVDNIRYGPQLRGKKL-------TENEVYKLLSLADLDSSF 187 (298)
Q Consensus 120 ~I~i~g~~i~-~~--~~~~~~~~ig~v~Q~~~l~~~--tv~eni~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~ 187 (298)
+|.+++.+-. .. ....+++.+++++|++.+++. |..|...+.... +... ...++ .+.+++. ..
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i---~~l~~l~-~~ 151 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKI---NSLTNMK-QD 151 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCch---HHhhhcc-cc
Confidence 6666653211 00 112346678999998877762 655544432211 1111 11223 3334443 34
Q ss_pred hcCCCCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 188 LNKTGGEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iAral~----~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
.++++.+||||||||++|||||+ .+|+++|+||||++||+.+++.+++.|+++.+ +.++|++||+.+ +..+||
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~-~~~~~d 228 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPE-LLEVAD 228 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH-HHhhCC
Confidence 67789999999999999999996 36899999999999999999999999999854 789999999966 568999
Q ss_pred EEEEEe
Q 022337 264 VVCLLV 269 (298)
Q Consensus 264 ~v~vl~ 269 (298)
++++|.
T Consensus 229 ~i~~l~ 234 (243)
T cd03272 229 KFYGVK 234 (243)
T ss_pred EEEEEE
Confidence 999885
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=258.01 Aligned_cols=177 Identities=27% Similarity=0.268 Sum_probs=139.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCE-eCCCCC-H-HHHhcceEEEeCCCC---------CCc-ccHH
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGR-DITDLD-V-LSLRRKVGMLFQIPA---------LFE-GTVV 155 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~-~i~~~~-~-~~~~~~ig~v~Q~~~---------l~~-~tv~ 155 (298)
..+++|+||||||||||+++|++++.|+ .|++++.|. ++.... . ...+.+++++||++. +.+ .||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4599999999999999999999999887 468888776 432111 0 122457999999962 334 4888
Q ss_pred HHhHhCcccc----CCCccHHHHHHHHHHcCCCc-------------------hhhcCCCCCCChhHHHHHHHHHHHc--
Q 022337 156 DNIRYGPQLR----GKKLTENEVYKLLSLADLDS-------------------SFLNKTGGEISVGQAQRVALARTLA-- 210 (298)
Q Consensus 156 eni~~~~~~~----~~~~~~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgGqkQRv~iAral~-- 210 (298)
+++..+.... +.....+++.++++.+++.. +..++++.+||+|||||++|||||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 8887654211 12224577889999999851 3456789999999999999999998
Q ss_pred --CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 211 --NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 211 --~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
.+|+++|+||||++||+..++.+.+.|+++.+ |.|+|+|||+.+.. +.||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~--g~~ii~iSH~~~~~-~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK--GSQFIVVSLKEGMF-NNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHH-HhCCEEEEEE
Confidence 57899999999999999999999999999853 88999999996554 6799998765
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=254.37 Aligned_cols=182 Identities=19% Similarity=0.249 Sum_probs=140.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh-cceE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR-RKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~-~~ig 141 (298)
.|+++|+. .| ++..+++++++ ++++|+||||||||||+++|. +++|.+.. ..+ ++++
T Consensus 5 ~l~l~nfk-~~-~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i~ 62 (212)
T cd03274 5 KLVLENFK-SY-AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKLS 62 (212)
T ss_pred EEEEECcc-cC-CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhHH
Confidence 37788877 67 46679999988 899999999999999999997 33554431 223 5799
Q ss_pred EEeCCCCCCcc-cHHHHhHhCcccc--------CCCccHHH----HHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLR--------GKKLTENE----VYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~--------~~~~~~~~----~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++|+..+++. ++.+++.+..... +......+ ..++++.++++ +..++++..||+|||||++||||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~-~~~~~~~~~lS~G~~~r~~la~a 141 (212)
T cd03274 63 DLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP-KKSWKNISNLSGGEKTLSSLALV 141 (212)
T ss_pred HHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc-cccccchhhcCHHHHHHHHHHHH
Confidence 99999887764 7777766543321 11111111 24556777775 46778899999999999999999
Q ss_pred HcC----CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 209 LAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 209 l~~----~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
++. +|++++|||||+|||+.++..+.+.|+++.+ +.|+|++||+. .+.++|||+++|..
T Consensus 142 l~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 142 FALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred HHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 974 5899999999999999999999999999853 67999999996 46689999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=239.96 Aligned_cols=234 Identities=28% Similarity=0.452 Sum_probs=191.9
Q ss_pred CeEEEEeEEEEeC---CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC----CccEEEECCEeCCCCCHH
Q 022337 62 PKFRVRELRKESD---DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP----PSGTVFLDGRDITDLDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~---~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p----~~G~I~i~g~~i~~~~~~ 134 (298)
+.+.++|++..+. |...+++++|+++++||+-|+||+||||||-..|.|+|..+- +.-+..+++.++..+++.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 4567788886653 334799999999999999999999999999999999998763 456778888888888776
Q ss_pred HHhc----ceEEEeCCCC--CCcc-cHH----HHhHhCccccCC-----CccHHHHHHHHHHcCCCc--hhhcCCCCCCC
Q 022337 135 SLRR----KVGMLFQIPA--LFEG-TVV----DNIRYGPQLRGK-----KLTENEVYKLLSLADLDS--SFLNKTGGEIS 196 (298)
Q Consensus 135 ~~~~----~ig~v~Q~~~--l~~~-tv~----eni~~~~~~~~~-----~~~~~~~~~~l~~~~l~~--~~~~~~~~~LS 196 (298)
+.|+ .|+++||+|. |-|. +|. +||-+- .+.+. .-.+.++.+++.++|+.+ +....||.+|.
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~w-TfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAW-TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccc-cccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 6554 5889999996 4443 553 333211 11111 123567889999999964 35667999999
Q ss_pred hhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 197 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 197 gGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
-||-|+|.||.|++++|++||.||||+++|+.++.+++.+|.++.+..|.||++++||+..+.+.||++-||.-|.-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eChhhhhc-cCChHHHHHhhh
Q 022337 277 LKPDLLSE-AKHPMALRFLQL 296 (298)
Q Consensus 277 g~~~~~~~-~~~~~~~~~~~~ 296 (298)
++.+++.+ +.|+|...++..
T Consensus 241 a~~e~l~~~PhHPYTqALi~a 261 (330)
T COG4170 241 APSEELVTMPHHPYTQALIRA 261 (330)
T ss_pred cchhHHhcCCCCchHHHHHHh
Confidence 99888754 567787766543
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=265.41 Aligned_cols=192 Identities=28% Similarity=0.398 Sum_probs=165.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
+..++++|++..-+++...+++.||+|++||.+-|.||||||||||+|+|+|+++.-+|+|.+- -...+
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-----------~~~~~ 458 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-----------ADSAL 458 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-----------CCCce
Confidence 4689999999998877889999999999999999999999999999999999999999998652 01358
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCC------CCCCChhHHHHHHHHHHHcCCCC
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKT------GGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LSgGqkQRv~iAral~~~p~ 214 (298)
-|+||.|.+..+|.+|-|.|+.... ...++++.++|.++||. ++.++. -..||+|||||+++||.|+++|+
T Consensus 459 lflpQ~PY~p~GtLre~l~YP~~~~--~~~d~~l~~vL~~vgL~-~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~ 535 (604)
T COG4178 459 LFLPQRPYLPQGTLREALCYPNAAP--DFSDAELVAVLHKVGLG-DLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPK 535 (604)
T ss_pred EEecCCCCCCCccHHHHHhCCCCCC--CCChHHHHHHHHHcCcH-HHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCC
Confidence 9999999988889999999985432 24578899999999995 444332 24799999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
+++|||.|++||+.++..+++++++-.. +.|||-|.|+.... .+.++.+-+.
T Consensus 536 ~v~LDEATsALDe~~e~~l~q~l~~~lp--~~tvISV~Hr~tl~-~~h~~~l~l~ 587 (604)
T COG4178 536 WVFLDEATSALDEETEDRLYQLLKEELP--DATVISVGHRPTLW-NFHSRQLELL 587 (604)
T ss_pred EEEEecchhccChHHHHHHHHHHHhhCC--CCEEEEeccchhhH-HHHhhheeec
Confidence 9999999999999999999999998654 89999999997654 6777766554
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-33 Score=265.22 Aligned_cols=205 Identities=24% Similarity=0.319 Sum_probs=171.8
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..|.+.+.|++|.|.++..+++++||-|..++.+|+|||||||||||||+++|.+.|+.|.|.-.-. .+
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~ 454 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NK 454 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------cc
Confidence 4678999999999976667999999999999999999999999999999999999999999864322 23
Q ss_pred eEEEeCCCC---CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPA---LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~---l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+++.-|+.. .+..++.|++.-.. ......+.+..++.++||..+..+.+.++||+|||.||.+||.++..|.+|
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~---~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL 531 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKF---PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL 531 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhc---cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence 444455442 24458888876321 111245678899999999866778889999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 282 (298)
+|||||++||..+...+-+.|.++ .-++|+||||.-.+.++++++++..+|.+. ..|+....
T Consensus 532 lLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 532 LLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred EecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 999999999999999999999987 348999999999999999999999999875 45666544
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=239.71 Aligned_cols=165 Identities=23% Similarity=0.348 Sum_probs=130.3
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHh----cCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCC-----CCc-c
Q 022337 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALN----RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA-----LFE-G 152 (298)
Q Consensus 83 isl~i~~Ge~~~iiG~nGsGKSTLlk~l~----gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~-----l~~-~ 152 (298)
.++++.+| +++|+||||||||||+++|. |...|+.|.+..+.+.+.. ...+..++++||++. ... .
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566777 99999999999999999994 9999988877622222221 123567999999982 233 3
Q ss_pred cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHH------HHHHHHHcCCCCeEEEeCcCCCCC
Q 022337 153 TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR------VALARTLANEPEVLLLDEPTSALD 226 (298)
Q Consensus 153 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQR------v~iAral~~~p~illLDEPts~LD 226 (298)
|+.+|+.+.. .+++.+ ..++++.+||+||+|| ++||||++.+|+++|+||||++||
T Consensus 92 ~~~~~~~~~~--------~~~~~~----------~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD 153 (204)
T cd03240 92 AILENVIFCH--------QGESNW----------PLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD 153 (204)
T ss_pred hHhhceeeec--------hHHHHH----------HHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccC
Confidence 8889887642 122222 2367788999999996 789999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 227 PISTQ-NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 227 ~~~~~-~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
+..+. .+.+.|.++.++.|.|+|++||+++.+ ..||+++.|++
T Consensus 154 ~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~-~~~d~i~~l~~ 197 (204)
T cd03240 154 EENIEESLAEIIEERKSQKNFQLIVITHDEELV-DAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEEEecHHHH-hhCCEEEEEee
Confidence 99999 999999998764478999999999977 46999999864
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=252.88 Aligned_cols=222 Identities=25% Similarity=0.459 Sum_probs=189.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC-CCCCHHHHh-
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI-TDLDVLSLR- 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i-~~~~~~~~~- 137 (298)
..+.++++||+..-..+...+++|||++.+||++||.|=.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ..++..+++
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 467899999998764445789999999999999999999999999999999999999999999999997 566665554
Q ss_pred cceEEEeCCCC---CC-cccHHHHhHhCcccc------CC---CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHH
Q 022337 138 RKVGMLFQIPA---LF-EGTVVDNIRYGPQLR------GK---KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 138 ~~ig~v~Q~~~---l~-~~tv~eni~~~~~~~------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~ 204 (298)
..++|||.|.. +. +.|+.||+.+..... +. ....+.+.++++.+++...-...+..+||||++||+-
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I 413 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI 413 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence 56999999874 44 469999999764321 11 1123457788899988522244567899999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+||-|..+|++||+.+||.|||..+.+.+.+.|.+.+++ |++|+++|-|++++..+||||.||.+|+++...++++.
T Consensus 414 laREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred hhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhhheeeeeeCCceecccccccC
Confidence 999999999999999999999999999999999998764 99999999999999999999999999999988877654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-32 Score=282.24 Aligned_cols=201 Identities=27% Similarity=0.356 Sum_probs=171.8
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-c
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-G 152 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~ 152 (298)
.+++|+||+=-++||-.+||+|+|||||||||++|+|-..- .+|+|.++|.+..+ +..+|.+|||-|++...+ .
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 34799999999999999999999999999999999997532 47999999998643 467889999999987666 4
Q ss_pred cHHHHhHhCccccCCC-----ccHHHHHHHHHHcCCCchhhcCCCC----CCChhHHHHHHHHHHHcCCC-CeEEEeCcC
Q 022337 153 TVVDNIRYGPQLRGKK-----LTENEVYKLLSLADLDSSFLNKTGG----EISVGQAQRVALARTLANEP-EVLLLDEPT 222 (298)
Q Consensus 153 tv~eni~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkQRv~iAral~~~p-~illLDEPt 222 (298)
||+|-+.|.+.++... +..+.++++++.++|+ ++.+.-++ .||..||+|+.||--|+.+| .||+|||||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 9999999987665321 1225689999999996 45655544 49999999999999999999 899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEe-CCEEEEeeChhh
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLV-NGEIVEVLKPDL 281 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~-~G~i~~~g~~~~ 281 (298)
||||..+...+++.+++++.. |.||+++-|.++ .+.+..|++++|+ +|+.+..|+..+
T Consensus 959 SGLDsqaA~~i~~~lrkla~t-GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 959 SGLDSQAAAIVMRFLRKLADT-GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCccHHHHHHHHHHHHHHHhc-CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999999999999874 999999999996 4566689999997 579999998754
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=274.42 Aligned_cols=221 Identities=28% Similarity=0.357 Sum_probs=158.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh---------cCCCCCcc------------E
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN---------RLWEPPSG------------T 120 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~---------gl~~p~~G------------~ 120 (298)
+.++++|++. ..|+|+||+|++||+++|.|+||||||||++-+. +...+..+ -
T Consensus 613 ~~L~v~~l~~------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 613 KFLKLKGARE------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred ceEEecCCcc------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 4688888862 2599999999999999999999999999999764 21111222 2
Q ss_pred EEECCEeCCCCC-------------HHHHh------cceEEEeCCCCCC-------------------------------
Q 022337 121 VFLDGRDITDLD-------------VLSLR------RKVGMLFQIPALF------------------------------- 150 (298)
Q Consensus 121 I~i~g~~i~~~~-------------~~~~~------~~ig~v~Q~~~l~------------------------------- 150 (298)
|.++-.++..-+ ...+. +..||.++.+.+.
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 333333322100 01111 1233333332221
Q ss_pred ------------------------cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 151 ------------------------EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 151 ------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
..|+.|++.|..... ...+..+.++.+||.....++++.+|||||+||+.||
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~----~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LA 842 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIP----KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLA 842 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhch----hhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHH
Confidence 135555555532211 1123456788899963246889999999999999999
Q ss_pred HHHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEee
Q 022337 207 RTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVL 277 (298)
Q Consensus 207 ral~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g 277 (298)
|+|+.+| +++||||||+|||+..++.+++.|+++.++ |.|||+|||+++.+. .||+|++| ++|++++.|
T Consensus 843 raL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~G 920 (943)
T PRK00349 843 KELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATG 920 (943)
T ss_pred HHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeC
Confidence 9999999 999999999999999999999999999754 899999999999985 79999999 799999999
Q ss_pred ChhhhhccCChHHHHHh
Q 022337 278 KPDLLSEAKHPMALRFL 294 (298)
Q Consensus 278 ~~~~~~~~~~~~~~~~~ 294 (298)
+++++......++..|+
T Consensus 921 t~~el~~~~~s~t~~~l 937 (943)
T PRK00349 921 TPEEVAKVEASYTGRYL 937 (943)
T ss_pred CHHHHHhCcccHHHHHH
Confidence 99998764444444443
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=283.00 Aligned_cols=213 Identities=24% Similarity=0.347 Sum_probs=159.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHH---------HHhcCCCCCcc----E----EEEC
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLR---------ALNRLWEPPSG----T----VFLD 124 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk---------~l~gl~~p~~G----~----I~i~ 124 (298)
+.++++|++. ..|+++||+|++||+++|.|+||||||||++ .|.|...+..+ . |.+|
T Consensus 599 ~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 599 GTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred CeEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 3688888762 3699999999999999999999999999999 66665433111 1 3444
Q ss_pred CEeCCCCCH----H------HHh---------c-----ceEEEeCC------------------C---------------
Q 022337 125 GRDITDLDV----L------SLR---------R-----KVGMLFQI------------------P--------------- 147 (298)
Q Consensus 125 g~~i~~~~~----~------~~~---------~-----~ig~v~Q~------------------~--------------- 147 (298)
-.++...+. . ++| + ...|.|+. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 433322100 0 122 1 12233442 0
Q ss_pred -----CCCc-ccHHHHhHhCcccc---CC--CccHHHHHHHHHHcCCCchh-hcCCCCCCChhHHHHHHHHHHHc---CC
Q 022337 148 -----ALFE-GTVVDNIRYGPQLR---GK--KLTENEVYKLLSLADLDSSF-LNKTGGEISVGQAQRVALARTLA---NE 212 (298)
Q Consensus 148 -----~l~~-~tv~eni~~~~~~~---~~--~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkQRv~iAral~---~~ 212 (298)
..|. .||.|++.++..-. .. ....+++ ++++.+|+. ++ .++++.+|||||+||++|||||+ .+
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~-~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~ 830 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLD-YLPLGRPLSSLSGGEIQRLKLAYELLAPSKK 830 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCc-chhhcCccccCCHHHHHHHHHHHHHhhcCCC
Confidence 1244 38999998874311 11 1112334 578899996 45 68999999999999999999997 69
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe------CCEEEEeeChhhhhc
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV------NGEIVEVLKPDLLSE 284 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~------~G~i~~~g~~~~~~~ 284 (298)
|++|||||||+|||+..++.++++|.+++++ |.|||+|||+++.+ .+||++++|. +|++++.|+++++..
T Consensus 831 P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 831 PTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999764 99999999999998 7999999996 799999999998754
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=233.53 Aligned_cols=196 Identities=19% Similarity=0.179 Sum_probs=134.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe-C-CC-----CCHHHH
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD-I-TD-----LDVLSL 136 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~-i-~~-----~~~~~~ 136 (298)
++++|+ +.|. +.. +|.+.++ +++|+||||||||||+.+|++++.++.|++...+.+ + .. .+....
T Consensus 4 i~l~nf-~~~~-~~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~ 75 (247)
T cd03275 4 LELENF-KSYK-GRH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSA 75 (247)
T ss_pred EEEECc-cccC-CCe-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceE
Confidence 677886 4563 222 2333344 999999999999999999999998888887654421 1 11 011111
Q ss_pred hcceEEEeCCCCC--CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc-------------hhh--------cCCCC
Q 022337 137 RRKVGMLFQIPAL--FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS-------------SFL--------NKTGG 193 (298)
Q Consensus 137 ~~~ig~v~Q~~~l--~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------~~~--------~~~~~ 193 (298)
.-.+.|..|++.. +..++.+.... ....+.....+.+.++++.+|+.. .+. ++++.
T Consensus 76 ~v~~~f~~~~~~~~~~~~~~~~~~~~-~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~ 154 (247)
T cd03275 76 YVTAVYEDDDGEEKTFRRIITGGSSS-YRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMD 154 (247)
T ss_pred EEEEEEEcCCCcEEEEEEEEECCceE-EEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHH
Confidence 1224444444331 22233222111 011122234556778888888841 112 23348
Q ss_pred CCChhHHHHHHHHHHHcCC----CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 194 EISVGQAQRVALARTLANE----PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 194 ~LSgGqkQRv~iAral~~~----p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
+||+|||||++||||++.+ |+++||||||++||+..+..+.+.|.+++++ |.++|+|||+.+.+ .+||++++|.
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~-~~~d~i~~~~ 232 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFF-SKADALVGVY 232 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHH-hhCCeEEEEE
Confidence 9999999999999999864 8999999999999999999999999998754 89999999998766 6899998886
Q ss_pred C
Q 022337 270 N 270 (298)
Q Consensus 270 ~ 270 (298)
.
T Consensus 233 ~ 233 (247)
T cd03275 233 R 233 (247)
T ss_pred e
Confidence 4
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-30 Score=223.36 Aligned_cols=174 Identities=22% Similarity=0.203 Sum_probs=128.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC-CHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL-DVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~-~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
++++++++.+| +.+|+||||||||||+..|...+..... ....|..+..+ ........|.+.||+..+++ |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46788888888 8899999999999999999854433221 11112211100 00011345889999877665 1
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH----cCCCCeEEEeCcCCCCCHHHHHHHH
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIE 234 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral----~~~p~illLDEPts~LD~~~~~~~~ 234 (298)
.. .....+++.++++. . +..++++.+||+|||||++||+|+ +.+|+++||||||++||+..+..+.
T Consensus 84 ----~~--~~~~~~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~ 153 (198)
T cd03276 84 ----PL--CVLSQDMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIST 153 (198)
T ss_pred ----cC--CHHHHHHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHH
Confidence 00 11123556677766 3 356889999999999999999999 6999999999999999999999999
Q ss_pred HHHHHHHhc--CCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 235 DVLVKLKKK--HGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 235 ~~l~~l~~~--~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
+.|.++.++ .+.|||++||+++.+..+ |+|.+|..++
T Consensus 154 ~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 154 DLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 999998653 246899999999999875 9999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-29 Score=244.25 Aligned_cols=215 Identities=27% Similarity=0.334 Sum_probs=155.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC--CEeCCCCCHHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD--GRDITDLDVLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~--g~~i~~~~~~~~~~~i 140 (298)
.++++|+++.|. +..+++|+.|++.+|+.+||+|+|||||||+|++|.|-..|..-++-+. .+++..-....+..-+
T Consensus 75 dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~ 153 (614)
T KOG0927|consen 75 DVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVV 153 (614)
T ss_pred cceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHh
Confidence 599999999995 6789999999999999999999999999999999999998866554332 2222110000000000
Q ss_pred EEEeCCCCCCcccHHHHhHhC---------------ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 141 GMLFQIPALFEGTVVDNIRYG---------------PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~---------------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
-..+++..-+. --.|.+.-. ..-...+..+.++.+++.-+|...++.++...+||||||.|++|
T Consensus 154 ~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aL 232 (614)
T KOG0927|consen 154 METDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAAL 232 (614)
T ss_pred hhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHH
Confidence 01111000000 000111100 00000011234566677777776678889999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE-EEEeeChhhh
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE-IVEVLKPDLL 282 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~-i~~~g~~~~~ 282 (298)
||||..+|++|||||||++||+.+..-+-+.|.++.. + ++++++|+-+.+-.+|++|+.+++++ +.+.|+.+.+
T Consensus 233 Ar~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 233 ARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--I-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--c-eEEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence 9999999999999999999999999999999988732 2 89999999999999999999999999 5677877665
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=240.19 Aligned_cols=198 Identities=27% Similarity=0.379 Sum_probs=170.9
Q ss_pred CCCCeEEEEeEEEEeCCCC-cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 59 IQKPKFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~~-~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
...|.+++.+|+|.|..+. +.+.+++++++.-+.++++|+||+||||++|++.|-..|.+|.+.+.+ |
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r 426 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------R 426 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------c
Confidence 3467899999999998776 799999999999999999999999999999999999999999886643 4
Q ss_pred cceEEEeCCCC-CCcccH--HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPA-LFEGTV--VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~-l~~~tv--~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
.+|+|.+|... .++.+| .|..+ ..+.|. .+++++..+..+|++.++..+....||||||-||++|.+..++|.
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd~~~--~~~pG~--~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph 502 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVDFME--KSFPGK--TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH 502 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHHHHH--HhCCCC--CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence 67999999663 334333 33332 112232 568899999999999888888889999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
+|+|||||+.||..+-..+.+.|+.+. -.|||||||.+++...|+.+|+.++|++..
T Consensus 503 lLVLDEPTNhLD~dsl~AL~~Al~~F~----GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 503 LLVLDEPTNHLDRDSLGALAKALKNFN----GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred EEEecCCCccccHHHHHHHHHHHHhcC----CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999883 369999999999999999999999999975
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=257.76 Aligned_cols=108 Identities=30% Similarity=0.420 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC---CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 022337 173 EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN---EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249 (298)
Q Consensus 173 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~---~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii 249 (298)
+..++++.+||.....++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+++.|.++.++ |.|||
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVI 885 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVV 885 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Confidence 345678888996324688999999999999999999997 59999999999999999999999999999754 89999
Q ss_pred EEccCHHHHHhhcCEEEEE------eCCEEEEeeChhhh
Q 022337 250 MVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLL 282 (298)
Q Consensus 250 ~itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~ 282 (298)
++||+++.+. .||++++| ++|++++.|+++++
T Consensus 886 vi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 886 VIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999885 69999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=235.08 Aligned_cols=188 Identities=28% Similarity=0.390 Sum_probs=151.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++-.++.+.|+ ...|+-=+=+|..||+++++||||-||||++|+|+|.++|++|. ..+ -+++|
T Consensus 342 lv~y~~~~k~~g--~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 342 LVEYPDLKKTYG--DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred eeecchheeecC--ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 455556666663 22333333456778999999999999999999999999999997 212 24788
Q ss_pred EeCCCC-CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPA-LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
=||--. -|++||.+.+.-..... ..+.-...++++-++|+ .+.+++..+|||||.|||+||.||.++++++|||||
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~--~~~s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEP 482 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSA--FGSSYFKTEIVKPLNLE-DLLERPVDELSGGELQRVAIAAALSREADLYLLDEP 482 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhh--cccchhHHhhcCccchH-HHHhcccccCCchhHHHHHHHHHhccccCEEEecCc
Confidence 888542 26679999887543210 01112245678888996 689999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
+|.||.+.+-.+-..|+++....++|.++|.||+-.+..++||++|.+
T Consensus 483 SA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 483 SAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred hhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999999998889999999999999999999999985
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=233.06 Aligned_cols=197 Identities=25% Similarity=0.414 Sum_probs=163.4
Q ss_pred CCCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 60 QKPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
.+..|++++|+..-+. +..+.+|+||+|++|+.+.|.||||||||+|+|.++||++-.+|++.--.+. . -+
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~----~----~~ 501 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG----G----PK 501 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccC----C----CC
Confidence 4468999999998876 4567788999999999999999999999999999999999999999753321 1 14
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccc---cCCCccHHHHHHHHHHcCCCchhhcCC-----------CCCCChhHHHHHH
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQL---RGKKLTENEVYKLLSLADLDSSFLNKT-----------GGEISVGQAQRVA 204 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LSgGqkQRv~ 204 (298)
.+-|+||.|.+-.+|.+|.+.|+..- .....+++++.+.|+.+++. ++..+- ...||+|||||++
T Consensus 502 ~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~-hl~~r~ggld~~~~~dW~dvLS~GEqQRLa 580 (659)
T KOG0060|consen 502 DLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLG-HLLEREGGLDQQVDWDWMDVLSPGEQQRLA 580 (659)
T ss_pred ceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhh-hHHHHhCCCCchhhccHHhhcCHHHHHHHH
Confidence 58999999987668999999998431 11234567788888877774 333322 3479999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
+||.++++|++-+|||-||++|...+..+.+.+++. |.|.|-|+|+-+.. ++-|.++-|+.
T Consensus 581 ~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~----giT~iSVgHRkSL~-kfHd~~L~~~g 641 (659)
T KOG0060|consen 581 FARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM----GITFISVGHRKSLW-KFHDYVLRMDG 641 (659)
T ss_pred HHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc----CCeEEEeccHHHHH-hhhhEEEEecC
Confidence 999999999999999999999999999999888764 89999999998865 67899999975
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=241.67 Aligned_cols=202 Identities=26% Similarity=0.337 Sum_probs=152.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..|.+.+++..|+ ++.+|++-++++..|-.+||+|+||+|||||||+|+. |+|.....+ .+.+-.--
T Consensus 79 ~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~~t 145 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGDDT 145 (582)
T ss_pred cceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheeccch
Confidence 3588999999994 7889999999999999999999999999999999998 555433211 11111101
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHH-HHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYK-LLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
...|+ .+-.. .+.+.+.-...+.. ....+++.. +|.-+|+.+++..++..+||||.|-|++|||||..+|+|||||
T Consensus 146 ~~~~~-~l~~D~~~~dfl~~e~~l~~-~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLD 223 (582)
T KOG0062|consen 146 EALQS-VLESDTERLDFLAEEKELLA-GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLD 223 (582)
T ss_pred HHHhh-hhhccHHHHHHHHhhhhhhc-cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeec
Confidence 11111 11222 33333332211110 112344444 8899999888888999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 282 (298)
|||+.||..+..-+-+.|..+ +.|+|+||||-+++-..|..|+.+++-++- +.|+.+++
T Consensus 224 EPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 224 EPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred CCcccchhHHHHHHHHHHhhC----CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999876 479999999999999999999999887763 45666655
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-28 Score=230.10 Aligned_cols=203 Identities=28% Similarity=0.335 Sum_probs=165.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
.+|.+-+.+|+|.|++.++.+++++|-|.--..+|||||||.||||||++|.|-+.|+.|+.+=+ .|-+
T Consensus 583 ~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~ 651 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLR 651 (807)
T ss_pred CCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceee
Confidence 46789999999999888899999999999999999999999999999999999999999987422 2456
Q ss_pred eEEEeCCCC--CC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPA--LF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
||+..|..+ |- ..|..|.+.-... ...++++..|-.+||..+--.-.+..||||||-||++|-.-+..|+||
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~FN-----lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl 726 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRKFN-----LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL 726 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHhcC-----CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE
Confidence 999999764 32 2377787753322 234678889999999744334467899999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE-eeChhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE-VLKPDLL 282 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~-~g~~~~~ 282 (298)
||||||++||..+...+-+.|.++. -.|||||||-..+.+.-=..||+++-.|-+ +|+-++.
T Consensus 727 ILDEPTNNLDIESIDALaEAIney~----GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 727 ILDEPTNNLDIESIDALAEAINEYN----GGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred EecCCCCCcchhhHHHHHHHHHhcc----CcEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence 9999999999999999999999883 379999999888776544678887765533 3444443
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=205.51 Aligned_cols=210 Identities=26% Similarity=0.371 Sum_probs=167.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC-CCH------
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD-LDV------ 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~-~~~------ 133 (298)
+..|++.++.|+|....+++-|+|++++.|....++|.||||||||||+|+|---.-.|.|.+.|++.-. -+.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 4469999999999877799999999999999999999999999999999999877777999999986422 111
Q ss_pred ----HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 134 ----LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 134 ----~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
.++.+..++--.-|.--+.++.+ +.|+.. +. +.++-+++++.++++ ..-+.+.+|-|||+||.|++.|
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~-mifgV~--g~--dp~Rre~LI~iLDId---l~WRmHkvSDGqrRRVQicMGL 162 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVG--GD--DPERREKLIDILDID---LRWRMHKVSDGQRRRVQICMGL 162 (291)
T ss_pred eEecccccccccccccccccccccHHH-HHhhcc--CC--ChhHhhhhhhheecc---ceEEEeeccccchhhhHHHHhc
Confidence 11222222222111111224444 444432 11 235666778888885 2346788999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
++.=++|||||-|--||..++..+++.+++-++++|.||++.||-.+-++.+.++++.|++|+++...+
T Consensus 163 L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231 (291)
T ss_pred ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987433
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-26 Score=218.19 Aligned_cols=189 Identities=24% Similarity=0.393 Sum_probs=153.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
-|.++|+-.--+.+..++..++|.|++|-.+.|+||||||||+|+|+|.|+++...|...+ +. +.++-|
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--------P~---~~~mFY 549 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--------PR---PNNIFY 549 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec--------CC---CcceEe
Confidence 3888898877777777899999999999999999999999999999999999987776543 11 245999
Q ss_pred EeCCCCCCcccHHHHhHhCcc---ccCCCccHHHHHHHHHHcCCCchhhcCCC---------CCCChhHHHHHHHHHHHc
Q 022337 143 LFQIPALFEGTVVDNIRYGPQ---LRGKKLTENEVYKLLSLADLDSSFLNKTG---------GEISVGQAQRVALARTLA 210 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGqkQRv~iAral~ 210 (298)
+||.|..--+|.+|.|.|+-. ++.....+++...+|+.+.|+ +++.+.+ ..||||||||+++||.+.
T Consensus 550 IPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y 628 (728)
T KOG0064|consen 550 IPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLE-HILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY 628 (728)
T ss_pred ccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHH-HHHHhccChhhhccHHhhccchHHHHHHHHHHHh
Confidence 999998665699999988743 122223456677778877774 4444433 379999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
++|+.-+|||-||+..+.-+..+++..++. |.+.|-|||++... ++-..++-.
T Consensus 629 HrPkyalLDEcTsAvsidvE~~i~~~ak~~----gi~llsithrpslw-k~h~~ll~~ 681 (728)
T KOG0064|consen 629 HRPKYALLDECTSAVSIDVEGKIFQAAKDA----GISLLSITHRPSLW-KYHTHLLEF 681 (728)
T ss_pred cCcchhhhhhhhcccccchHHHHHHHHHhc----CceEEEeecCccHH-HHHHHHHhc
Confidence 999999999999999999999998887654 99999999999876 566666555
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-26 Score=200.51 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=112.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH------hcceEEEeCCC------
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL------RRKVGMLFQIP------ 147 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~------~~~ig~v~Q~~------ 147 (298)
++++.+++.+| +.+|+||||||||||+..|.-.+-...... .... ...++ ...|-..++..
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~-----~~~~~i~~g~~~~~v~~~~~~~~~~~~~ 86 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAK-----KVGEFVKRGCDEGTIEIELYGNPGNIQV 86 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-cccc-----CHHHHhhCCCCcEEEEEEEEeCCCcccc
Confidence 35667777776 778999999999999999877663222110 0000 00111 01122222221
Q ss_pred ---CC--CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH----cCCCCeEEE
Q 022337 148 ---AL--FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL----ANEPEVLLL 218 (298)
Q Consensus 148 ---~l--~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral----~~~p~illL 218 (298)
.. .+.++.+-..+. -.+.+..+.-...+.+..+.+||+|||||+.+|+++ +.+|+++|+
T Consensus 87 ~n~~~~~~q~~~~~~~~~~------------~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llll 154 (213)
T cd03277 87 DNLCQFLPQDRVGEFAKLS------------PIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVV 154 (213)
T ss_pred CCceEEEchHHHHHHHhCC------------hHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 10 011222211110 112222232212245667899999999999877554 589999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEccCHHHHHhhcC--EEEEEeCCE
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHG-MTIVMVSHSIKQIQRIAD--VVCLLVNGE 272 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g-~tii~itHd~~~~~~~~d--~v~vl~~G~ 272 (298)
||||++||+.++..+++.|.++.++.| .|+|++||++..+..+|| +|++|++|+
T Consensus 155 DEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 155 DEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999999999999875424 589999999988888887 688999886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-26 Score=197.60 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=111.3
Q ss_pred ceeeeeEEEeCCc-EEEEEcCCCccHHHHHHHHh--------cCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCC
Q 022337 79 ILKGVNMEIPKGV-IMGIIGPSGSGKSTLLRALN--------RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPAL 149 (298)
Q Consensus 79 vL~~isl~i~~Ge-~~~iiG~nGsGKSTLlk~l~--------gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l 149 (298)
.+-++||++.+|+ +++|.||||||||||+|+|+ |.+-|.... ..++|+.|..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~-----------------~~~~~~~~~~-- 76 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG-----------------SSLPVFENIF-- 76 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc-----------------ccCcCccEEE--
Confidence 3557999999995 79999999999999999998 433332100 0122222211
Q ss_pred CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHH
Q 022337 150 FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229 (298)
Q Consensus 150 ~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~ 229 (298)
..++.. +..++..+++|+||||++.+++++ .+|+++++|||++|+|+..
T Consensus 77 -----------------------------~~lg~~-~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~ 125 (200)
T cd03280 77 -----------------------------ADIGDE-QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVE 125 (200)
T ss_pred -----------------------------EecCch-hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHH
Confidence 111222 224455678999999999999885 8999999999999999999
Q ss_pred HHHHHH-HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 230 TQNIED-VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 230 ~~~~~~-~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+..+.. .++++.+ .|.++|++||+.+ +..+||++++|++|++..++
T Consensus 126 ~~~i~~~~l~~l~~-~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 126 GAALAIAILEELLE-RGALVIATTHYGE-LKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEECCHHH-HHHHHhcCCCeEEEEEEEec
Confidence 999964 6777754 4899999999955 56889999999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-26 Score=214.89 Aligned_cols=188 Identities=26% Similarity=0.367 Sum_probs=141.9
Q ss_pred EEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-------HHH------
Q 022337 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-------VLS------ 135 (298)
Q Consensus 69 l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~-------~~~------ 135 (298)
+..+|+.+-..|..+-. ..+|.++||+||||-||||-+|+|+|-+.|.=|+- ++. .+|. ..+
T Consensus 80 ~vHRYg~NgFkL~~LP~-pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~p--p~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 80 VVHRYGVNGFKLYRLPT-PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDP--PSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred ceeeccCCceEEecCCC-CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCC--CCHHHHHHHhhhhHHHHHHH
Confidence 44677544344444432 57899999999999999999999999999987764 221 1111 000
Q ss_pred -Hh-c--ceEEEeCC----CCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 136 -LR-R--KVGMLFQI----PALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 136 -~~-~--~ig~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
+. . ++..=+|- |..+.++|.|-+.-. ......+++.++++|. ...++.+++|||||.||+|||.
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~-------de~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV-------DERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHhh-------hhcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHH
Confidence 10 0 12222332 223345666655321 1123477889999996 6899999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
|++++++++++|||+|-||...+-..-+.++++++. +++||+|.||+..+.-++|-|.++..
T Consensus 227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEec
Confidence 999999999999999999999999999999999875 89999999999999999999988864
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=192.63 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=69.5
Q ss_pred CCChhHHHHHHHHHHHcC----CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 194 EISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 194 ~LSgGqkQRv~iAral~~----~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
.|||||+||+++|++++. +|+++++||||++||+..+..+.+.|+++.+ +.|+|++||+++.. .+||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~-~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVA-AMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHH-HhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999864 78999999999865 6899999999
Q ss_pred CCEE
Q 022337 270 NGEI 273 (298)
Q Consensus 270 ~G~i 273 (298)
+|..
T Consensus 247 ~~~~ 250 (276)
T cd03241 247 KEVE 250 (276)
T ss_pred EecC
Confidence 8743
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=180.24 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=68.6
Q ss_pred CChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 195 ISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 195 LSgGqkQRv~iAral~----~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
||+|||||++|||+++ .+|+++++|||+++||+..+..+.+.|.++.++ |.|+|++||+++.+. .||+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998754 799999999998774 7999999875
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=195.53 Aligned_cols=180 Identities=28% Similarity=0.483 Sum_probs=147.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--------CCCCccEEEECCEeCCCCCHHHHhcceEEEeCC--C
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--------WEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI--P 147 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--------~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~--~ 147 (298)
.+|+|+||+|++|++++|+|+|||||||++++|+|. |+|++|.|.+--..+ -+++|-+ |
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCccccc
Confidence 489999999999999999999999999999999995 689999997632221 1334432 2
Q ss_pred CCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch-hhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCC
Q 022337 148 ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS-FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226 (298)
Q Consensus 148 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD 226 (298)
.+-..|+.|.+.-- ..+-..+.++++++|+.+. +..++.++||-|||.|+.||++++.+|.+++.||-.|.||
T Consensus 466 ~f~~~tilehl~s~------tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD 539 (593)
T COG2401 466 EFGEVTILEHLRSK------TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539 (593)
T ss_pred ccCchhHHHHHhhc------cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcC
Confidence 22223777776422 1233456789999999743 3456788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEE
Q 022337 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIV 274 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~ 274 (298)
+.+...+..-|.+++++.|.|++++||+.+....+ -|+++.+.-|+..
T Consensus 540 ~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 540 ELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999999999988899999999999999888 5999888877654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=219.54 Aligned_cols=203 Identities=26% Similarity=0.355 Sum_probs=171.7
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC---CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-c
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP---PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-G 152 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p---~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~ 152 (298)
..+|+|+|.-+++|+.+.++||.|||||||+|.++|-.+- ..|+|.+||.+.++... ++.++|.+|+...++ .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3699999999999999999999999999999999998754 25799999999876543 677999999998887 5
Q ss_pred cHHHHhHhCccccCC-----Ccc-HH----HHHHHHHHcCCCch----hhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 153 TVVDNIRYGPQLRGK-----KLT-EN----EVYKLLSLADLDSS----FLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 153 tv~eni~~~~~~~~~-----~~~-~~----~~~~~l~~~~l~~~----~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||+|-+.|..+..+. ..+ ++ ..+.+++.+||+.. .-|...+-.|||||+||.+|-+++.+|+++.+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 999999998654332 111 22 24578999999621 22344668999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||+|.|||..+.-++.+.|+++++..+.|.+++-|... ++..+.|.|++|.+|+++..|+.++.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~ 349 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEV 349 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHH
Confidence 99999999999999999999999888889888888764 67788999999999999999998765
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=187.18 Aligned_cols=154 Identities=22% Similarity=0.204 Sum_probs=116.7
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE-EEeCCCCCCcccH
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG-MLFQIPALFEGTV 154 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig-~v~Q~~~l~~~tv 154 (298)
.+.+.+|+++++++|++++|.||||+|||||+++++- ..+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe---
Confidence 4578999999999999999999999999999999991 12233445 5555432111
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH--cCCCCeEEEeCc---CCCCCHHH
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL--ANEPEVLLLDEP---TSALDPIS 229 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral--~~~p~illLDEP---ts~LD~~~ 229 (298)
.+++++..+++++. ....+|.|++|++.+++++ +.+|+++||||| |+++|+.+
T Consensus 72 ------------------~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~ 129 (222)
T cd03285 72 ------------------IVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFG 129 (222)
T ss_pred ------------------ccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHH
Confidence 02234455666432 2467999999999999999 899999999999 99999988
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 230 ~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
.... .++.+.++.|.++|++||+ .++.++||++..+++|++....+
T Consensus 130 ~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 130 LAWA--IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 7543 3344443347899999996 66778999999999999977654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=184.22 Aligned_cols=145 Identities=21% Similarity=0.224 Sum_probs=105.9
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVV 155 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~ 155 (298)
+.+++|++|+. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|...+|+ .|+.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccch
Confidence 45788887765 79999999999999999999988553 2235655432 136677556676 4999
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~ 235 (298)
||+.++.... ....+++.++++.+++ .+|+++|+||||+|+|+..+..+..
T Consensus 78 d~l~~~~s~~--~~e~~~~~~iL~~~~~---------------------------~~p~llllDEp~~glD~~~~~~l~~ 128 (199)
T cd03283 78 DDLRDGISYF--YAELRRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGTNSRERQAASA 128 (199)
T ss_pred hccccccChH--HHHHHHHHHHHHhccC---------------------------CCCeEEEEecccCCCCHHHHHHHHH
Confidence 9998875321 1112345556655541 7999999999999999999987754
Q ss_pred -HHHHHHhcCCcEEEEEccCHHHHHhh--cCEEEE
Q 022337 236 -VLVKLKKKHGMTIVMVSHSIKQIQRI--ADVVCL 267 (298)
Q Consensus 236 -~l~~l~~~~g~tii~itHd~~~~~~~--~d~v~v 267 (298)
.+.++.+ .|.|+|++||+++.+... .++|-.
T Consensus 129 ~ll~~l~~-~~~tiiivTH~~~~~~~~~~~~~v~~ 162 (199)
T cd03283 129 AVLKFLKN-KNTIGIISTHDLELADLLDLDSAVRN 162 (199)
T ss_pred HHHHHHHH-CCCEEEEEcCcHHHHHhhhcCCCeEE
Confidence 6777765 489999999999988765 344444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-23 Score=174.67 Aligned_cols=138 Identities=25% Similarity=0.351 Sum_probs=102.9
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE-EeCCCCCCcccHHHHhHh
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM-LFQIPALFEGTVVDNIRY 160 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~-v~Q~~~l~~~tv~eni~~ 160 (298)
..++.+.++.++.|+|||||||||+++.+....-..+|.+.... +. +.|+ +++....+
T Consensus 13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~---------- 71 (162)
T cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL---------- 71 (162)
T ss_pred ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE----------
Confidence 34455556679999999999999999998877665555443310 00 0110 11110000
Q ss_pred CccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC----CCCeEEEeCcCCCCCHHHHHHHHHH
Q 022337 161 GPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDV 236 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~----~p~illLDEPts~LD~~~~~~~~~~ 236 (298)
+. ...+||+||+||+++||+|.. +|+++|+|||++|+|+..+..+.+.
T Consensus 72 ----------------------i~------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~ 123 (162)
T cd03227 72 ----------------------IF------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEA 123 (162)
T ss_pred ----------------------eh------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 10 001299999999999999986 7899999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 237 l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
+.++.++ +.++|++||+.+.+. .+|+++.|+.
T Consensus 124 l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 124 ILEHLVK-GAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred HHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 9998766 889999999999875 6899999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-22 Score=214.71 Aligned_cols=120 Identities=20% Similarity=0.264 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC---CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 022337 173 EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE---PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249 (298)
Q Consensus 173 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~---p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii 249 (298)
+..+.|+.+||..-.+.++..+|||||.||+-||.-|..+ +.+++|||||.||++...+.+++.|.++.+. |.|||
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tvi 1756 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVI 1756 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEE
Confidence 3456677888864346788999999999999999999876 7899999999999999999999999999864 99999
Q ss_pred EEccCHHHHHhhcCEEEEEe------CCEEEEeeChhhhhccCChHHHHHh
Q 022337 250 MVSHSIKQIQRIADVVCLLV------NGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 250 ~itHd~~~~~~~~d~v~vl~------~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
+|.||++.+.. ||.|+-|- .|+|++.|+|+++....++++-.|+
T Consensus 1757 vieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~~~l 1806 (1809)
T PRK00635 1757 YIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLKTYM 1806 (1809)
T ss_pred EEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHHHHh
Confidence 99999999865 99999884 4899999999999876556655544
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-23 Score=198.49 Aligned_cols=212 Identities=22% Similarity=0.322 Sum_probs=159.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCH-------
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDV------- 133 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~------- 133 (298)
.|+++|++.+-. ++..+.+.|+.|-.|..+++|||||-|||||||.|+.- --|..=.|.+..+.+..-+.
T Consensus 264 DIKiEnF~ISA~-Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 264 DIKIENFDISAQ-GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred cceeeeeeeecc-cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHH
Confidence 489999998874 67899999999999999999999999999999999863 33444456666665532110
Q ss_pred HHHhcceEEEeCCCC----CCc--ccHHHHhHhC---ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHH
Q 022337 134 LSLRRKVGMLFQIPA----LFE--GTVVDNIRYG---PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~----l~~--~tv~eni~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~ 204 (298)
+.-.++..++-.+.. +-. .|+.|.+.-- ++..+....+.+++.+|.-+|++.++.+++...+|||.|-||+
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 000112222211111 111 2555444311 1111223346778899999999888888889999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE-eeCh
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE-VLKP 279 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~-~g~~ 279 (298)
+||||..+|-+|+|||||+.||..+...+-++|.-+ .+|.++||||-.++...|+.|+.|++-++.. .|..
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 999999999999999999999999999999999888 3699999999999999999999999988753 3443
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=192.98 Aligned_cols=120 Identities=30% Similarity=0.431 Sum_probs=101.9
Q ss_pred HHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 022337 174 VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250 (298)
Q Consensus 174 ~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~ 250 (298)
..+.|..+||.--.+.++..+|||||.|||-||.-|.++. -++||||||+||-..-.+.+++.|.++..+ |.|||+
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViV 880 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIV 880 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 3345566677533467888999999999999999999888 899999999999999999999999999875 999999
Q ss_pred EccCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhccCChHHHHHhh
Q 022337 251 VSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 295 (298)
Q Consensus 251 itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~~~~~~~~~~~ 295 (298)
|.|+++.+. .||.|+-| ..|+|++.|+|+++.+....+.-.|+.
T Consensus 881 IEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk 930 (935)
T COG0178 881 IEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLK 930 (935)
T ss_pred EecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHH
Confidence 999999885 69999987 468999999999997655556655554
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=171.49 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=104.3
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHh
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRY 160 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~ 160 (298)
-.++++.+|++++|+||||||||||+|+|++.. .+..|.... ..+..+++..|....
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~----------- 78 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTR----------- 78 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEE-----------
Confidence 345666689999999999999999999999543 222222110 001223332221100
Q ss_pred CccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHH-HHH
Q 022337 161 GPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV-LVK 239 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~-l~~ 239 (298)
++..+ ......+.+|.+++| +..+.+++.+|+++|+||||+|+|+..+..+... ++.
T Consensus 79 --------------------~~~~d-~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~ 136 (202)
T cd03243 79 --------------------IGAED-SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEH 136 (202)
T ss_pred --------------------ecCcc-cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 01111 112234456766665 6666788899999999999999999998888654 555
Q ss_pred HHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 240 LKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 240 l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+.+ .+.++|++||+.+.+. .|+++..++.|++...+...+
T Consensus 137 l~~-~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 137 LLE-KGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHh-cCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence 544 4899999999988765 688999999999988876443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-21 Score=200.26 Aligned_cols=106 Identities=29% Similarity=0.474 Sum_probs=96.8
Q ss_pred HHHHHcCCCchh-hcCCCCCCChhHHHHHHHHHHHcCCC--CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 022337 176 KLLSLADLDSSF-LNKTGGEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252 (298)
Q Consensus 176 ~~l~~~~l~~~~-~~~~~~~LSgGqkQRv~iAral~~~p--~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~it 252 (298)
+.++.+||. ++ .++++.+|||||+|||+|||||+.+| +++||||||+|||+..++.+++.|+++++ .|.|||+|+
T Consensus 471 ~~L~~vGL~-~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVe 548 (943)
T PRK00349 471 KFLVDVGLD-YLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVE 548 (943)
T ss_pred HHhhccccC-CCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 367888995 45 68999999999999999999999997 99999999999999999999999999975 499999999
Q ss_pred cCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhc
Q 022337 253 HSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSE 284 (298)
Q Consensus 253 Hd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~ 284 (298)
||++.+. .||+|++| ++|+++..|+++++..
T Consensus 549 H~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 549 HDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999986 69999999 9999999999988743
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=171.91 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=66.2
Q ss_pred CCCCChhHHHHHHHHHHHc---------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 192 GGEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 192 ~~~LSgGqkQRv~iAral~---------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
...+|+||+|+++|||+|+ .+|+++|+||||++||+..+..+.+.+.++ + .+++++|+.+.+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccchh
Confidence 4468999999999999985 799999999999999999999999999865 2 3666676767777787
Q ss_pred ---CEEEEEeCCEE
Q 022337 263 ---DVVCLLVNGEI 273 (298)
Q Consensus 263 ---d~v~vl~~G~i 273 (298)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-21 Score=167.68 Aligned_cols=143 Identities=19% Similarity=0.219 Sum_probs=104.3
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccH
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTV 154 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv 154 (298)
+..+.+|++|++++|++++|+||||+||||++|+++++. +..++|+-. |..+. .++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~v--pa~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFV--PAEYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCc--chhhcCccC
Confidence 457999999999999999999999999999999999873 122233211 22222 255
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHH
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~ 234 (298)
.|+|.. .++..+ -..+..+++|+|++|+ ..+.+++.+|+++|+|||++|+|+.....+.
T Consensus 72 ~d~I~~-------------------~~~~~d-~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~ 130 (204)
T cd03282 72 FNRLLS-------------------RLSNDD-SMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAIS 130 (204)
T ss_pred hhheeE-------------------ecCCcc-ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHH
Confidence 555532 223322 2345567899999976 4556688999999999999999997766654
Q ss_pred -HHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 235 -DVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 235 -~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
..+..+.+. |.++|++||+.+.+...++
T Consensus 131 ~~il~~l~~~-~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 131 LAILECLIKK-ESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHHHHhc-CCEEEEECChHHHHHHhhc
Confidence 456666544 8999999999998876653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=196.33 Aligned_cols=104 Identities=30% Similarity=0.469 Sum_probs=95.0
Q ss_pred HHHHcCCCchh-hcCCCCCCChhHHHHHHHHHHHcCCC--CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 022337 177 LLSLADLDSSF-LNKTGGEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253 (298)
Q Consensus 177 ~l~~~~l~~~~-~~~~~~~LSgGqkQRv~iAral~~~p--~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itH 253 (298)
.+..+||. .+ +++++.+|||||+|||.|||||+.+| +++||||||+|||+.....+.+.|+++.++ |.|||+|+|
T Consensus 470 ~L~~vgL~-~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~-G~TVIvVeH 547 (924)
T TIGR00630 470 FLIDVGLD-YLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL-GNTVIVVEH 547 (924)
T ss_pred hHhhcccc-ccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEEC
Confidence 46777885 34 68999999999999999999999986 899999999999999999999999999764 999999999
Q ss_pred CHHHHHhhcCEEEEE------eCCEEEEeeChhhhh
Q 022337 254 SIKQIQRIADVVCLL------VNGEIVEVLKPDLLS 283 (298)
Q Consensus 254 d~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~ 283 (298)
|++.+. .||+|++| ++|+|++.|+++++.
T Consensus 548 d~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 548 DEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 999886 89999999 999999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-20 Score=172.59 Aligned_cols=184 Identities=24% Similarity=0.296 Sum_probs=146.5
Q ss_pred EEeCCCCcceeeeeEEEeCCc-----EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeC
Q 022337 71 KESDDGAPILKGVNMEIPKGV-----IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145 (298)
Q Consensus 71 ~~y~~~~~vL~~isl~i~~Ge-----~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q 145 (298)
++|++-+.-+.+..|.|+.|| ++..+|+||.||||++++++|.++|++|. ++..+ .++|=||
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykpq 409 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKPQ 409 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecccc
Confidence 456655667889999999885 68899999999999999999999999862 22222 3677778
Q ss_pred CCC-CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCC
Q 022337 146 IPA-LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224 (298)
Q Consensus 146 ~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~ 224 (298)
... -+..||++-+.--.+ ..-.....+.+.++-+.++ +..++.+..|||||+|||++|.+|=+.+++++.|||.+-
T Consensus 410 kispK~~~tvR~ll~~kIr--~ay~~pqF~~dvmkpL~ie-~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAy 486 (592)
T KOG0063|consen 410 KISPKREGTVRQLLHTKIR--DAYMHPQFVNDVMKPLQIE-NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAY 486 (592)
T ss_pred ccCccccchHHHHHHHHhH--hhhcCHHHHHhhhhhhhHH-HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence 654 245688886642211 1111234566778888885 578999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
||.+.+..--..++++--+.++|-.+|.||.-.+-..||||++.+.
T Consensus 487 lDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred cChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 9999999888888886544578999999999988888999998753
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-19 Score=165.66 Aligned_cols=142 Identities=23% Similarity=0.307 Sum_probs=102.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL 169 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~-~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 169 (298)
..++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++...++++||+......+|.+|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~---------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP---------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch----------
Confidence 578999999999999999999999999999999999986543 345666788888865322234444321
Q ss_pred cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 022337 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249 (298)
Q Consensus 170 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii 249 (298)
+ .. |+ ..++|+ .+|+++|+|||++ .+.+..++..+. .|.++|
T Consensus 182 -k--~~----------------------~~---~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~--~G~~vI 223 (270)
T TIGR02858 182 -K--AE----------------------GM---MMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH--AGVSII 223 (270)
T ss_pred -H--HH----------------------HH---HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh--CCCEEE
Confidence 0 00 11 333343 6999999999974 344555555553 389999
Q ss_pred EEccCHHH--H-----------HhhcCEEEEEeCCEEEEeeChhhh
Q 022337 250 MVSHSIKQ--I-----------QRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 250 ~itHd~~~--~-----------~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
++||+.+. + ..++||+++|++|+ ..|+++++
T Consensus 224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred EEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 99997665 4 25689999999886 56666554
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-19 Score=157.53 Aligned_cols=157 Identities=22% Similarity=0.248 Sum_probs=103.3
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccH
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTV 154 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv 154 (298)
...+.+|++++.++ ++++|+|||||||||++|+++++.-. |+ .|..+ + ..+..++++.| +|+ .++
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p--~~~~~i~~~~~---i~~~~~~ 82 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---P--ASKAEIGVVDR---IFTRIGA 82 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---c--cccceecceee---EeccCCc
Confidence 34689999999987 99999999999999999999875421 11 12111 1 11345777755 333 366
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH--cCCCCeEEEeCc---CCCCCHHH
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL--ANEPEVLLLDEP---TSALDPIS 229 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral--~~~p~illLDEP---ts~LD~~~ 229 (298)
.||+..+. |.=...+..+++++ +.+|+++||||| |+++|+..
T Consensus 83 ~~~ls~g~---------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~ 129 (216)
T cd03284 83 SDDLAGGR---------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS 129 (216)
T ss_pred hhhhccCc---------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Confidence 66665431 11122222333333 579999999999 88888865
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 230 ~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
. ....+..+.+..+.++|++||+.+ +.+++|++..+++|++...++.+++
T Consensus 130 ~--~~~il~~l~~~~~~~vi~~TH~~~-l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 130 I--AWAIVEYLHEKIGAKTLFATHYHE-LTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred H--HHHHHHHHHhccCCcEEEEeCcHH-HHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 2 223333343333789999999975 4568999888888988776665554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-18 Score=147.81 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=60.7
Q ss_pred hcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEccCHHHHHhhcCEEE
Q 022337 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~ 266 (298)
.++..+++|+|++|...+++. +.+|+++|+|||++|+|+.....+. ..++.+.++.+.++|++||+++ +.++||+--
T Consensus 55 ~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~~~ 132 (185)
T smart00534 55 LAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADEHP 132 (185)
T ss_pred hhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhcCc
Confidence 456677899988874444432 4599999999999999999887775 4455565434789999999996 557887533
Q ss_pred EEeCCEE
Q 022337 267 LLVNGEI 273 (298)
Q Consensus 267 vl~~G~i 273 (298)
-+++++.
T Consensus 133 ~v~~~~~ 139 (185)
T smart00534 133 GVRNLHM 139 (185)
T ss_pred cceEEEE
Confidence 3344443
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-18 Score=133.30 Aligned_cols=77 Identities=26% Similarity=0.161 Sum_probs=69.5
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
..+|++++|++++|++++|+||||||||||++++. +|++.++|.++..++..+.++.+++++|+ +|..|++|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999986 89999999999877766667778888888 78889999
Q ss_pred HhHhC
Q 022337 157 NIRYG 161 (298)
Q Consensus 157 ni~~~ 161 (298)
||.++
T Consensus 74 Ni~~~ 78 (107)
T cd00820 74 NIFLI 78 (107)
T ss_pred hceee
Confidence 99985
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=148.52 Aligned_cols=77 Identities=26% Similarity=0.358 Sum_probs=68.2
Q ss_pred CCCChhHHHHHHHHHHHc---------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc-
Q 022337 193 GEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA- 262 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral~---------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~- 262 (298)
..+|.||+|++++|++|+ .+|+|+|||||+++||+..++.+++.+.++ +..++++||+.+.+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhhc
Confidence 589999999999999996 799999999999999999999999998764 357999999988776664
Q ss_pred -CEEEEEeCCEE
Q 022337 263 -DVVCLLVNGEI 273 (298)
Q Consensus 263 -d~v~vl~~G~i 273 (298)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999987
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-17 Score=144.66 Aligned_cols=177 Identities=27% Similarity=0.335 Sum_probs=101.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHh-cCCC-CC-ccEEEECCEeCCC--CCHHHHhcceEEEeCCCCCC----c
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALN-RLWE-PP-SGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALF----E 151 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~-gl~~-p~-~G~I~i~g~~i~~--~~~~~~~~~ig~v~Q~~~l~----~ 151 (298)
+...+.+.+| +++|+|||||||||++..|. .|-. +. +.+..-...-+.. .........|...+++..-. .
T Consensus 16 ~~~~~~~~~~-~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSPG-LNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTSS-EEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCCC-CEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 4667777654 99999999999999999993 3331 11 1111000000000 00011123455555554311 1
Q ss_pred c--cHHHHhHh-Cc---cccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH----cCCCCeEEEeCc
Q 022337 152 G--TVVDNIRY-GP---QLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL----ANEPEVLLLDEP 221 (298)
Q Consensus 152 ~--tv~eni~~-~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral----~~~p~illLDEP 221 (298)
. .+...+.- +. ...+.......+.+.+....+.. ..||||||.+++||--| ..+++++|||||
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEv 167 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEV 167 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEEST
T ss_pred cccccccccccccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccccc
Confidence 0 11100000 00 01111223455666777666642 28999999999998665 357899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
.++||..++..+.++|+++.+ +.-+|++||+.... ..||+.+.+
T Consensus 168 d~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~-~~a~~~~~v 211 (220)
T PF02463_consen 168 DAALDEQNRKRLADLLKELSK--QSQFIITTHNPEMF-EDADKLIGV 211 (220)
T ss_dssp TTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-HHHH-TT-SEEEEE
T ss_pred ccccccccccccccccccccc--cccccccccccccc-ccccccccc
Confidence 999999999999999999864 57899999998766 568987655
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=141.61 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=94.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc--CCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc--cc
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR--LWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE--GT 153 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g--l~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~--~t 153 (298)
.|-+|+++.=..+.+++|.||||+|||||||.++. ++ ++.|...... ...++|..|...-+. .+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 45556665422237899999999999999999984 33 5667654321 124677777542211 12
Q ss_pred HHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHH
Q 022337 154 VVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233 (298)
Q Consensus 154 v~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~ 233 (298)
+.+++ . .+ .-+.||+++|++++.+|+++|+|||++|+|+.....+
T Consensus 85 i~~~~-------------------------S-~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~ 129 (213)
T cd03281 85 VSSGQ-------------------------S-AF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGL 129 (213)
T ss_pred hhhcc-------------------------c-hH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHH
Confidence 21111 1 11 3457999999999999999999999999999765444
Q ss_pred -HHHHHHHHhc--CCcEEEEEccCHHHHHhhc
Q 022337 234 -EDVLVKLKKK--HGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 234 -~~~l~~l~~~--~g~tii~itHd~~~~~~~~ 262 (298)
...++++.++ .+.++|++||+.+.+....
T Consensus 130 ~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 130 LIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 5677777653 1358999999999887653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=164.05 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=101.1
Q ss_pred eEEEEeEEEEeCCCCccee-----eeeEEEeCC-cEEEEEcCCCccHHHHHHHHhcC-CCCCccEEEECCEeCCCCCHHH
Q 022337 63 KFRVRELRKESDDGAPILK-----GVNMEIPKG-VIMGIIGPSGSGKSTLLRALNRL-WEPPSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~-----~isl~i~~G-e~~~iiG~nGsGKSTLlk~l~gl-~~p~~G~I~i~g~~i~~~~~~~ 135 (298)
.+.++++.. ++++ .+|+++.++ ++++|.||||+|||||||+|+|. +.+..|.
T Consensus 295 ~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------- 353 (771)
T TIGR01069 295 KIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------- 353 (771)
T ss_pred CEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------
Confidence 466666553 3443 378888877 89999999999999999999987 3344431
Q ss_pred HhcceEEEeCCCC-CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 136 LRRKVGMLFQIPA-LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 136 ~~~~ig~v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+||.... .+ .+.+++... ++..+ -.....+++|+|++|++.|++++ .+|+
T Consensus 354 ------~Vpa~~~~~~--~~~d~i~~~-------------------i~~~~-si~~~LStfS~~m~~~~~il~~~-~~~s 404 (771)
T TIGR01069 354 ------PIPANEHSEI--PYFEEIFAD-------------------IGDEQ-SIEQNLSTFSGHMKNISAILSKT-TENS 404 (771)
T ss_pred ------CccCCccccc--cchhheeee-------------------cChHh-HHhhhhhHHHHHHHHHHHHHHhc-CCCc
Confidence 3333221 01 111122100 01011 12234668999999999999887 7899
Q ss_pred eEEEeCcCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEccCHHHH
Q 022337 215 VLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
++|+|||++|+||.....+. .++..+.+ .|.++|++||+.+..
T Consensus 405 LvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL~ 448 (771)
T TIGR01069 405 LVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKELK 448 (771)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence 99999999999999999994 56666654 589999999998864
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-16 Score=150.72 Aligned_cols=173 Identities=26% Similarity=0.379 Sum_probs=123.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe---CCCC-CHHHHhcce--------------EEEeCCCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD---ITDL-DVLSLRRKV--------------GMLFQIPAL 149 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~---i~~~-~~~~~~~~i--------------g~v~Q~~~l 149 (298)
.+|++.+++|.||-||||-+|+++|-.+|.-|.-- ++-+ +-.+ ...++.... -||.|-|..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 57999999999999999999999999999877542 1111 1000 001111000 011110100
Q ss_pred CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHH
Q 022337 150 FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229 (298)
Q Consensus 150 ~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~ 229 (298)
...+|.+.+.- ..+++...++++.+.|. ...++...+||||+-||.+||.+.+++.++.++|||.+.||.+.
T Consensus 177 ~k~~v~~~l~~-------~~~r~~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQ 248 (592)
T KOG0063|consen 177 VKGTVGSLLDR-------KDERDNKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQ 248 (592)
T ss_pred HHHHHHHHHHH-------HhhcccHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHH
Confidence 11122222211 11123455677777775 57888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 230 ~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
+..--..|+.+... +.-||+|.||++.+..+.|-+.++..
T Consensus 249 RLkaA~~IRsl~~p-~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 249 RLKAAITIRSLINP-DRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred hhhHHHHHHHhhCC-CCeEEEEEeechHHHhhhcceeEEec
Confidence 99999999998764 78899999999999888999988864
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=146.22 Aligned_cols=168 Identities=21% Similarity=0.269 Sum_probs=117.1
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC---CC-----CCHHHHhcceEEEeCCC
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI---TD-----LDVLSLRRKVGMLFQIP 147 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i---~~-----~~~~~~~~~ig~v~Q~~ 147 (298)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++- .+ ++...+++.+.++.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45699999 99999999999999999999999999999999999999965543 32 22334567899997643
Q ss_pred C--CC------c-ccHHHHhHhCccccCCC-----ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 148 A--LF------E-GTVVDNIRYGPQLRGKK-----LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 148 ~--l~------~-~tv~eni~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
. +. . .|+.|+..-- +.+ .+--+..++.+.+++ .+.+|
T Consensus 224 ~~~~~r~~~~~~a~~iAEyfr~~----g~~Vll~~Dsltr~A~A~rEisl-------------------------~~ge~ 274 (438)
T PRK07721 224 QPALMRIKGAYTATAIAEYFRDQ----GLNVMLMMDSVTRVAMAQREIGL-------------------------AVGEP 274 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC----CCcEEEEEeChHHHHHHHHHHHH-------------------------hcCCC
Confidence 2 11 0 1233333210 000 011112222222221 01222
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKK-KHGM-----TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~-~~g~-----tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+ .|+|+||.....+.+++.++.. +.|. ||++.+||++. .+||++.++.+|+|+.+++..+
T Consensus 275 P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 275 P------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred C------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence 2 2689999999999999999863 3475 99999999995 7899999999999999887654
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-16 Score=139.97 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=113.4
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc--EEEECCEeCCCCCHHHHhcce---EEE--eCCCCCCcc----
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG--TVFLDGRDITDLDVLSLRRKV---GML--FQIPALFEG---- 152 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G--~I~i~g~~i~~~~~~~~~~~i---g~v--~Q~~~l~~~---- 152 (298)
=+.+.+|+.++|+||+|+|||||++.+++......+ .+++....-+..+..++.+.+ -++ ++++.....
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~ 89 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAE 89 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHH
Confidence 357899999999999999999999999999877643 323321111113444444433 112 222221111
Q ss_pred cHHHHhHhCccccCCC-----ccHHHHHHHHHHcCCCchhhcCCCCCCChhH--------HHHHHHHHHHcCCCCeEEEe
Q 022337 153 TVVDNIRYGPQLRGKK-----LTENEVYKLLSLADLDSSFLNKTGGEISVGQ--------AQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 153 tv~eni~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--------kQRv~iAral~~~p~illLD 219 (298)
.+.+...+.. ..+.. .+-.+..+..+.... ..+..+|||+ +||+++||++.++++|.+|
T Consensus 90 ~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~------~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 90 MVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVP------PSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccc------cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 1111111100 01111 112233344443333 3355679999 9999999999999999999
Q ss_pred CcCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 220 EPTSALDPISTQN-IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 220 EPts~LD~~~~~~-~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
||+.+|..+... ++ +.++.. .+.|.|++||++.... .+|.|.+|+.|++.+
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~la~~~-~~paI~vl~s~sr~~ 213 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRLAERR-IFPAIDILKSGTRKE 213 (249)
T ss_pred -eeheecCCCcccchH--HHHHhc-CCCcEEEEchHHhhCC-CCCeEEEcCCCCccc
Confidence 999999655543 44 454432 4789999999999885 579999999999853
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-16 Score=135.34 Aligned_cols=145 Identities=21% Similarity=0.295 Sum_probs=87.4
Q ss_pred EEEEEcCCCccHHHHH-HHHhcCCCC-----------------CccEEEECCEeCCCCCH-HHHhcceEEEeCCCC-C--
Q 022337 92 IMGIIGPSGSGKSTLL-RALNRLWEP-----------------PSGTVFLDGRDITDLDV-LSLRRKVGMLFQIPA-L-- 149 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLl-k~l~gl~~p-----------------~~G~I~i~g~~i~~~~~-~~~~~~ig~v~Q~~~-l-- 149 (298)
.++|+|+||||||||+ +.+.|..++ +.|.+.+.+.|...... ..++ .+|..+... +
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence 4799999999999999 689998764 46788888877643211 1111 122222211 0
Q ss_pred Cc---c-c---HH----------HHhHhCccccCCCccH----HHHHHHHHHcCCCchhhcCCCCCCChh--HHHHHHHH
Q 022337 150 FE---G-T---VV----------DNIRYGPQLRGKKLTE----NEVYKLLSLADLDSSFLNKTGGEISVG--QAQRVALA 206 (298)
Q Consensus 150 ~~---~-t---v~----------eni~~~~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkQRv~iA 206 (298)
|+ . | +. +|+.+.......+..+ .+..+..+..++. +. ..+..||+ |++++.||
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~--e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ--YY--DISAKSNYNFEKPFLWLA 164 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE--EE--EEeCCCCCCHHHHHHHHH
Confidence 11 1 1 11 1111000000111000 1222333444432 11 23344444 89999999
Q ss_pred HHHcCCCCeEEEeCcC-----CCCCHHHHHHHHHHHHHHHh
Q 022337 207 RTLANEPEVLLLDEPT-----SALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 207 ral~~~p~illLDEPt-----s~LD~~~~~~~~~~l~~l~~ 242 (298)
|+++.+|+++++|||| ++|||..++.+.+.++++++
T Consensus 165 ~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 165 RRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999 99999999999999999853
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-15 Score=130.97 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=91.6
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc-CCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR-LWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g-l~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
+.+.+|++|++.+|++++|.||||+||||++|++++ .+.++.|...... . -.+++..|=.. .....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~i~~--~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDSVLT--RMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccceEEE--EecCc
Confidence 468999999999999999999999999999999999 6778888765431 1 12333322100 00111
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHH-H
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-E 234 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~-~ 234 (298)
|++.-+ + +.+ ..+.+|++-+-.-+.+|+++|+|||.+|.|+.....+ .
T Consensus 85 d~~~~~---------------------~---------StF-~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~ 133 (222)
T cd03287 85 DSIQHG---------------------M---------STF-MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAY 133 (222)
T ss_pred cccccc---------------------c---------chH-HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHH
Confidence 111110 0 011 1223333333334578999999999999987766664 4
Q ss_pred HHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 235 DVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 235 ~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
..++.+.+..+.++|++||+.+...
T Consensus 134 ~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 134 ATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHhccCCeEEEEcccHHHHH
Confidence 5666665544789999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-15 Score=154.23 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=100.3
Q ss_pred eEEEe-CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE-EEeCCCCCCcccHHHHhHhC
Q 022337 84 NMEIP-KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG-MLFQIPALFEGTVVDNIRYG 161 (298)
Q Consensus 84 sl~i~-~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig-~v~Q~~~l~~~tv~eni~~~ 161 (298)
++.+. .+.++.|.|||++||||+||.++... +-.++| +||-... ...++.++|..
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~---------------------~maq~G~~vpa~~~-~~i~~~~~i~~- 376 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAA---------------------LMAKSGLPIPANEP-SEIPVFKEIFA- 376 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHH---------------------HHHHhCCCcccCCC-ccccccceEEE-
Confidence 44444 45689999999999999999996431 111222 4444321 00122233311
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH-HHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-VLVKL 240 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~-~l~~l 240 (298)
.+|-.+ -..+..+++|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++..+
T Consensus 377 ------------------~ig~~~-si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l 436 (782)
T PRK00409 377 ------------------DIGDEQ-SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL 436 (782)
T ss_pred ------------------ecCCcc-chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 122221 23456778999999999999999 8999999999999999999998865 45555
Q ss_pred HhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 241 ~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
.+ .|.++|++||+.+.....+++..++ ++.+..
T Consensus 437 ~~-~~~~vIitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 437 RK-RGAKIIATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred HH-CCCEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 54 4899999999999887767765544 455544
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-15 Score=148.04 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=70.4
Q ss_pred CCChhHHHHHHHHHHHcCC----CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 194 EISVGQAQRVALARTLANE----PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 194 ~LSgGqkQRv~iAral~~~----p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
.|||||+||++||++++.. |++|||||||+|||+..+..+.+.|+++.+ +.+||+|||++..+. +||++++|+
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQVAA-HADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHH-hcCeEEEEE
Confidence 6899999999999999985 699999999999999999999999999864 799999999998885 899999999
Q ss_pred CCE
Q 022337 270 NGE 272 (298)
Q Consensus 270 ~G~ 272 (298)
+|.
T Consensus 517 k~~ 519 (563)
T TIGR00634 517 KEG 519 (563)
T ss_pred Ecc
Confidence 864
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-15 Score=156.37 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=77.9
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHcC----------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 187 FLNKTGGEISVGQAQRVALARTLAN----------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 187 ~~~~~~~~LSgGqkQRv~iAral~~----------~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
..++++.+|||||++||+||+||+. +|++||+||||++||+.+...+++.|.++.+ .|++|+||||+++
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPE 1021 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHH
Confidence 3456789999999999999999986 7999999999999999999999999999976 5999999999999
Q ss_pred HHHhhcCEEEEEeCC
Q 022337 257 QIQRIADVVCLLVNG 271 (298)
Q Consensus 257 ~~~~~~d~v~vl~~G 271 (298)
....+||+|.|++.|
T Consensus 1022 ~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1022 FRERIPHRILVKKTN 1036 (1042)
T ss_pred HHHhhCCEEEEEECC
Confidence 999999999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-14 Score=145.14 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=70.3
Q ss_pred CCCCCChhHHHHHHHHHHHc----------CCCCeEEEeCcC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 191 TGGEISVGQAQRVALARTLA----------NEPEVLLLDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 191 ~~~~LSgGqkQRv~iAral~----------~~p~illLDEPt-s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
.+.+||||||||++||+||+ .+|+++|||||| ++||+..+..+.+.|.++ + |.|||+|||+.+..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~~~~- 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKDHDP- 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECchhch-
Confidence 45799999999999999988 599999999998 789999999999999988 3 78999999997766
Q ss_pred hhcCEEEEEeC-CEE
Q 022337 260 RIADVVCLLVN-GEI 273 (298)
Q Consensus 260 ~~~d~v~vl~~-G~i 273 (298)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 56999999986 544
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.6e-14 Score=124.43 Aligned_cols=159 Identities=18% Similarity=0.292 Sum_probs=96.6
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHH-HHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTL-LRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTL-lk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+.++++.+.++++ +++|+++.|.|||||||||| +++++++.++....+++.... +..
T Consensus 8 ~~~~~ld~~l~gg----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~-------- 65 (230)
T PRK08533 8 LSRDELHKRLGGG----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTT-------- 65 (230)
T ss_pred EEEeeeehhhCCC----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHH--------
Confidence 5566777766433 79999999999999999999 799999876544444443211 111
Q ss_pred EeCCCCCCcccHHHHh-HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc----CCCCeEE
Q 022337 143 LFQIPALFEGTVVDNI-RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA----NEPEVLL 217 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~----~~p~ill 217 (298)
...++. .++. +. .+....=.+. +.+-.+ .+|+++.++-.+++.+- .+|++++
T Consensus 66 ----------~~~~~~~~~g~-----~~-----~~~~~~~~l~--~~~~~~-~~~~~~~~~~~l~~il~~~~~~~~~~lV 122 (230)
T PRK08533 66 ----------EFIKQMMSLGY-----DI-----NKKLISGKLL--YIPVYP-LLSGNSEKRKFLKKLMNTRRFYEKDVII 122 (230)
T ss_pred ----------HHHHHHHHhCC-----ch-----HHHhhcCcEE--EEEecc-cccChHHHHHHHHHHHHHHHhcCCCEEE
Confidence 111111 1111 10 0111100110 111122 36666666555555443 3699999
Q ss_pred EeCcCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHH--------HHhhcCEEEEEe
Q 022337 218 LDEPTSAL----DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--------IQRIADVVCLLV 269 (298)
Q Consensus 218 LDEPts~L----D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~--------~~~~~d~v~vl~ 269 (298)
+||||+++ |+...+.+.+.+++++++ |.|+++ ||+... +..+||-|+.|+
T Consensus 123 IDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 123 IDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred EECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 99999999 888889999999988664 776655 555443 244567777776
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-14 Score=141.76 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=69.6
Q ss_pred CCChhHHHHHHHHHHHcC----CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 194 EISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 194 ~LSgGqkQRv~iAral~~----~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
.|||||+||++||++++. +|+++|+|||++|||+.+...+.+.|+++.+ +.+||+|||++..+ .+||+++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVA-GCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH-HhCCEEEEEe
Confidence 479999999999999997 5899999999999999999999999999964 68999999999876 6899999998
Q ss_pred CCE
Q 022337 270 NGE 272 (298)
Q Consensus 270 ~G~ 272 (298)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 753
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-15 Score=126.23 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=65.2
Q ss_pred cCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEE
Q 022337 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~~~p~illLDEP--ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~ 266 (298)
.++...+||+++-++.+++..+.+|+++++||| +.++|+. +.+.+.++.+ .+.++|+++|+- .+..++|++.
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~-~~~~~i~v~h~~-~~~~~~~~i~ 146 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLD-SEKPVIATLHRR-SVHPFVQEIK 146 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHh-CCCeEEEEECch-hhHHHHHHHh
Confidence 345567999999999999999999999999995 4455544 4555555553 488999999995 5557899999
Q ss_pred EEeCCEEEEe
Q 022337 267 LLVNGEIVEV 276 (298)
Q Consensus 267 vl~~G~i~~~ 276 (298)
.+.+|+|.+.
T Consensus 147 ~~~~~~i~~~ 156 (174)
T PRK13695 147 SRPGGRVYEL 156 (174)
T ss_pred ccCCcEEEEE
Confidence 9999999765
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=144.90 Aligned_cols=80 Identities=29% Similarity=0.336 Sum_probs=70.2
Q ss_pred cCCCCCCChhHHH------HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 189 NKTGGEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 189 ~~~~~~LSgGqkQ------Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
+.++..|||||+| |+++|++++.+|+++|+||||++||+..+..+.++|..+... +.+||+||||.+.. .+|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~~iiiith~~~~~-~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IPQVIIVSHDEELK-DAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHH-HhC
Confidence 3567899999999 556667889999999999999999999999999999988654 78999999999855 689
Q ss_pred CEEEEEeC
Q 022337 263 DVVCLLVN 270 (298)
Q Consensus 263 d~v~vl~~ 270 (298)
|++++|+.
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999983
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=132.11 Aligned_cols=169 Identities=22% Similarity=0.236 Sum_probs=123.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++-+.++..|..+..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+.-
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------------- 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------------- 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------------
Confidence 467777887776566788885 99999999999999999999999999999999999887766542
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc-------CCCCe
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA-------NEPEV 215 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~-------~~p~i 215 (298)
.++.|.+..- +..-++.....=....+-|.|+|+|++.+.+.+ .++-+
T Consensus 195 ---------~ev~e~~~~~----------------l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VL 249 (432)
T PRK06793 195 ---------REVKDFIRKE----------------LGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVL 249 (432)
T ss_pred ---------ccHHHHHHHH----------------hhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 1344443211 111112111111345678999999999999887 78999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
+++|+||...|+. +++...+.+.-.. |.+..+.||-. ++++|.-...+|.|....+
T Consensus 250 lilDslTr~a~A~--reisl~~~e~p~~-G~~~~~~s~l~----~L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 250 LMMDSVTRFADAR--RSVDIAVKELPIG-GKTLLMESYMK----KLLERSGKTQKGSITGIYT 305 (432)
T ss_pred EEecchHHHHHHH--HHHHHHhcCCCCC-Ceeeeeeccch----hHHHHhccCCCcceEEEEE
Confidence 9999999999996 6676677766543 88888888843 3444544457899876554
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-13 Score=148.84 Aligned_cols=107 Identities=22% Similarity=0.347 Sum_probs=80.3
Q ss_pred CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCC--------CchhhcCCCCCCChhHHH------HHHHHHHHcCCCC
Q 022337 149 LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADL--------DSSFLNKTGGEISVGQAQ------RVALARTLANEPE 214 (298)
Q Consensus 149 l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l--------~~~~~~~~~~~LSgGqkQ------Rv~iAral~~~p~ 214 (298)
.|.+|+.+||.+.. ..+.+ ..++...+. ..+-....++.||||||| |++||||++.+|+
T Consensus 1153 ~~~~~~~~~i~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~ 1225 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRS-----DADEN--VSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCG 1225 (1311)
T ss_pred HcCccHHHHhhcCC-----CCChH--HHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCC
Confidence 37789999999832 11111 122222221 111122345689999999 9999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEccCHHHHHhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKK----KHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~----~~g~tii~itHd~~~~~~~~ 262 (298)
+|+|||||++||+.+...+.+.|.++.. ..|.+||+||||++++..+|
T Consensus 1226 il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1226 IIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLG 1277 (1311)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHh
Confidence 9999999999999999999999988742 23789999999999998886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=122.70 Aligned_cols=142 Identities=20% Similarity=0.197 Sum_probs=92.4
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-cc
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GT 153 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~t 153 (298)
++.+-+|++|++++|++++|.||||+||||+++++++..-.. -|. .+ +.+ ..+++++.+ +|. ..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~--~~~i~~~~~---i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAK--SMRLSLVDR---IFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Ccc--ccEeccccE---EEEecC
Confidence 457899999999999999999999999999999999864211 121 11 000 011222111 111 12
Q ss_pred HHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHH
Q 022337 154 VVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233 (298)
Q Consensus 154 v~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~ 233 (298)
..|++..+. ++++ .|.++++-.-..+.+|+++|+|||++|+|+.....+
T Consensus 82 ~~d~~~~~~------------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~l 130 (218)
T cd03286 82 ARDDIMKGE------------------------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAI 130 (218)
T ss_pred cccccccCc------------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHH
Confidence 222222111 0111 233444433344578999999999999999999988
Q ss_pred HHH-HHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 234 EDV-LVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 234 ~~~-l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
... +..+.+..+.++|++||+++.+..++
T Consensus 131 a~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 131 AHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 888 56665433899999999999988776
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-13 Score=142.49 Aligned_cols=79 Identities=29% Similarity=0.423 Sum_probs=69.0
Q ss_pred CCCCCCChhHHHHHHH------HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcC-C-cEEEEEccCHHHHHhh
Q 022337 190 KTGGEISVGQAQRVAL------ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH-G-MTIVMVSHSIKQIQRI 261 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~i------Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~-g-~tii~itHd~~~~~~~ 261 (298)
..+..|||||++|++| ||+++.+|++++|||||++||+..+..+.+++....+.. + .++|+||||.+.+ .+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 3578999999999975 599999999999999999999999999999998654332 3 4899999999977 68
Q ss_pred cCEEEEEe
Q 022337 262 ADVVCLLV 269 (298)
Q Consensus 262 ~d~v~vl~ 269 (298)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-13 Score=118.43 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=69.4
Q ss_pred hhcCCCCCCChhHHH------HHHHHHHHcCCCCeEEEeCcCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEccCHHH
Q 022337 187 FLNKTGGEISVGQAQ------RVALARTLANEPEVLLLDEPTSALD---PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 187 ~~~~~~~~LSgGqkQ------Rv~iAral~~~p~illLDEPts~LD---~~~~~~~~~~l~~l~~~~g~tii~itHd~~~ 257 (298)
..+..+..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.++++.+++. |.|+|+++|+...
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v~~~~~~ 142 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLTSEQSGL 142 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEEeccccC
Confidence 456778899999998 5555555678999999999999999 88888888888888654 9999999998765
Q ss_pred ---------HHhhcCEEEEEe
Q 022337 258 ---------IQRIADVVCLLV 269 (298)
Q Consensus 258 ---------~~~~~d~v~vl~ 269 (298)
+..+||.++.|+
T Consensus 143 ~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 143 EGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CCcccCcCceeEeeeEEEEEE
Confidence 678899999887
|
A related protein is found in archaea. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-13 Score=144.00 Aligned_cols=81 Identities=28% Similarity=0.259 Sum_probs=75.1
Q ss_pred cCCCCCCChhHHHHHHHHHHHcC--------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh
Q 022337 189 NKTGGEISVGQAQRVALARTLAN--------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~~--------~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~ 260 (298)
++++.+|||||+|+++||+||+. +|++||+||||++||+.+.+.+++.|..+.+. |+||+||||..+...+
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~-g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNAS-GKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEecHHHHHHh
Confidence 47889999999999999999996 89999999999999999999999999999754 9999999999999988
Q ss_pred hcCEEEEEeC
Q 022337 261 IADVVCLLVN 270 (298)
Q Consensus 261 ~~d~v~vl~~ 270 (298)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 8888888865
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-13 Score=118.22 Aligned_cols=66 Identities=24% Similarity=0.436 Sum_probs=54.5
Q ss_pred CCCCChhHHHHHHHHHHHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH
Q 022337 192 GGEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 192 ~~~LSgGqkQRv~iAral~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
...+|.|+||.+.++.++...+ .++++|||-++|.|..++.+.+.|.+..+ .+.-+|++||.+..+
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence 4567999999999998888766 89999999999999999999999988865 478899999998654
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=131.28 Aligned_cols=115 Identities=28% Similarity=0.422 Sum_probs=96.1
Q ss_pred HHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC--CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 178 LSLADLDSSFLNKTGGEISVGQAQRVALARTLANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 178 l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~--p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
|..+||+---+++...+|||||.||+.||.-+-.. -=+++||||+.||-++--+++++.|+++.. .|-|+|+|.||.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDe 543 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDE 543 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCH
Confidence 33456642235788899999999999999999876 348899999999999999999999999965 599999999999
Q ss_pred HHHHhhcCEEEEE------eCCEEEEeeChhhhhccCChHHHHHh
Q 022337 256 KQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 256 ~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
+.+. .||+|+-| +.|+|++.|+++++..+.+.++-+|+
T Consensus 544 dti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YL 587 (935)
T COG0178 544 DTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYL 587 (935)
T ss_pred HHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHhh
Confidence 8885 59999976 57899999999999876656655543
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=133.89 Aligned_cols=69 Identities=25% Similarity=0.348 Sum_probs=61.3
Q ss_pred cCCCCeEEEeCcCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH---------hhcCEEEEEeCCEEEEeeCh
Q 022337 210 ANEPEVLLLDEPTSAL-DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ---------RIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 210 ~~~p~illLDEPts~L-D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~---------~~~d~v~vl~~G~i~~~g~~ 279 (298)
..+|+++++|||+.+| |+..++.+.+.++++.+. |.+++++||+++.+. ..|+++++|.+|++...+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~-~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA-NCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999998764 889999999999885 57999999999998766543
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-13 Score=142.88 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=70.1
Q ss_pred hcCCCCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 188 LNKTGGEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iAral~----~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
.+.++..||||||||++||++++ .+|+++||||||++||+.++..+.++|.++++ +.++|||||++..+ .+||
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d 1159 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTM-EVAD 1159 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHH-HHhh
Confidence 45678899999999999999984 67899999999999999999999999999864 57899999999976 5799
Q ss_pred EEEEEe
Q 022337 264 VVCLLV 269 (298)
Q Consensus 264 ~v~vl~ 269 (298)
+++.+.
T Consensus 1160 ~~~~~~ 1165 (1179)
T TIGR02168 1160 QLYGVT 1165 (1179)
T ss_pred hHeeee
Confidence 987554
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-13 Score=131.00 Aligned_cols=67 Identities=25% Similarity=0.367 Sum_probs=56.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhcceEEEeCCC
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVFLDGRDITDLDVLSLRRKVGMLFQIP 147 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~ig~v~Q~~ 147 (298)
.+|++|||++++||+++|+|||||||||||+ +|+.+|++| +|.++|.++...+..++.. +-+|||+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence 5899999999999999999999999999999 888999998 7999999997655433211 11888865
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-12 Score=122.42 Aligned_cols=144 Identities=14% Similarity=0.168 Sum_probs=97.8
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCc
Q 022337 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGP 162 (298)
Q Consensus 83 isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~ 162 (298)
+++.++.|+.++|+||+|||||||+++|+++++|+.|.+.+.+ ..++.... +..+.++.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCCC--------------
Confidence 5577889999999999999999999999999999999888742 22222110 111221111000
Q ss_pred cccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh
Q 022337 163 QLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~ 242 (298)
. + ....| ..-.++.+|-.+|+++++|||.+ .+.+++++.+..
T Consensus 200 -------~-----------~---------~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~ 241 (308)
T TIGR02788 200 -------Q-----------G---------LAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNT 241 (308)
T ss_pred -------C-----------C---------cCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhc
Confidence 0 0 00111 12246677889999999999996 345666776643
Q ss_pred cCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 243 ~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
.+.+++.++|..+. ....+|+..|..|++...|.+.+..
T Consensus 242 -g~~~~i~T~Ha~~~-~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 242 -GHPGSITTLHAGSP-EEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred -CCCeEEEEEeCCCH-HHHHHHHHHHhhccccccCCCHHHH
Confidence 23456999999984 4568999999999988888776654
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=105.37 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=80.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccH
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE 171 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 171 (298)
++.|.||||+||||+++.+++...+..|.|.+.+.+... .. ..++... . .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~------------------~~~~~~~-~-----~--- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EE------------------LTERLIG-E-----S--- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HH------------------HHHHHhh-h-----h---
Confidence 368999999999999999999887766666554332211 00 1111100 0 0
Q ss_pred HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC----------CCCHHHHHHHHHHHHHHH
Q 022337 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS----------ALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 172 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts----------~LD~~~~~~~~~~l~~l~ 241 (298)
.....+.. .+........+.++.++++.+++...+|+++++|||++ +.|....+.+.+++...
T Consensus 51 --~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~- 123 (165)
T cd01120 51 --LKGALDNL----IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA- 123 (165)
T ss_pred --hccccccE----EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-
Confidence 00000000 01122223445566668889999999999999999995 44555556666655544
Q ss_pred hcCCcEEEEEccCHHHH
Q 022337 242 KKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 242 ~~~g~tii~itHd~~~~ 258 (298)
++.+.|+|+++|.....
T Consensus 124 ~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 124 RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred hcCCceEEEEEecCCcc
Confidence 45699999999987544
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.2e-12 Score=106.83 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=66.1
Q ss_pred CCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
+..+..|-||-=---+.+.+ ++.-++|||||-|+|.|.-+-+++..|.++++. |.-+||+||.+=...-=.-+|+-++
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEe
Confidence 34456799997666666665 456899999999999999999999999999875 8999999999866543346788887
Q ss_pred CCEEE
Q 022337 270 NGEIV 274 (298)
Q Consensus 270 ~G~i~ 274 (298)
.+-+.
T Consensus 203 ~~g~~ 207 (233)
T COG3910 203 ESGIE 207 (233)
T ss_pred cCCcc
Confidence 77643
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.1e-12 Score=134.35 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=69.8
Q ss_pred cCCCCCCChhHHHHHHHHHHHcC----CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 189 NKTGGEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~~----~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
.+++..||||||++++||++|+. +|+++|||||+++||+.++..+.++|.++.+ +.++|+|||+...+ .+||+
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~ 1145 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMI-EYADR 1145 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHH-Hhcce
Confidence 34577999999999999999984 7899999999999999999999999999854 57899999998766 78999
Q ss_pred EEEEeC
Q 022337 265 VCLLVN 270 (298)
Q Consensus 265 v~vl~~ 270 (298)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 987754
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.4e-11 Score=104.93 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=92.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHh-cCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhH-hCcc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALN-RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR-YGPQ 163 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~-gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~-~~~~ 163 (298)
=+++|.++.|.|++|||||||...++ +..+ ..+. +.|+..+.. +..+.++.. ++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~-------------------~~y~~~e~~--~~~~~~~~~~~g~- 77 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKK-------------------VYVITTENT--SKSYLKQMESVKI- 77 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCE-------------------EEEEEcCCC--HHHHHHHHHHCCC-
Confidence 48999999999999999999998875 2222 1223 333332211 112222221 111
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC--CCCeEEEeCcCCC---CCHHHHHHHHHHHH
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN--EPEVLLLDEPTSA---LDPISTQNIEDVLV 238 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~--~p~illLDEPts~---LD~~~~~~~~~~l~ 238 (298)
...+......+..+.+. -......|.++++.+..++.++. +|+++++||||+. .|......+++.++
T Consensus 78 ----~~~~~~~~g~l~i~~~~----~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~ 149 (234)
T PRK06067 78 ----DISDFFLWGYLRIFPLN----TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAK 149 (234)
T ss_pred ----ChhHHHhCCCceEEecc----ccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHH
Confidence 10000000001111110 11223457788999999999997 9999999999954 55555566666676
Q ss_pred HHHhcCCcEEEEEccCHHH-------HHhhcCEEEEEeC
Q 022337 239 KLKKKHGMTIVMVSHSIKQ-------IQRIADVVCLLVN 270 (298)
Q Consensus 239 ~l~~~~g~tii~itHd~~~-------~~~~~d~v~vl~~ 270 (298)
.+++ .|.|+++++|+... +..++|-++.|+.
T Consensus 150 ~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 150 NLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 6665 48999999997654 4566777777763
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=128.56 Aligned_cols=79 Identities=32% Similarity=0.453 Sum_probs=68.7
Q ss_pred CCCCCChhHHH------HHHHHHHHcCC-----C-CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEccCHHH
Q 022337 191 TGGEISVGQAQ------RVALARTLANE-----P-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM-TIVMVSHSIKQ 257 (298)
Q Consensus 191 ~~~~LSgGqkQ------Rv~iAral~~~-----p-~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~-tii~itHd~~~ 257 (298)
.+..||||||| |+++|++++.+ | +++|+||||++||+..+..+.++|.++... |. +||+||||.+.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~-~~~qviiish~~~~ 856 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL-GVEQIVVVSHDDEL 856 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc-CCCeEEEEECChHH
Confidence 46799999999 99999999863 3 679999999999999999999999998643 54 79999999998
Q ss_pred HHhhcCEEEEEeCC
Q 022337 258 IQRIADVVCLLVNG 271 (298)
Q Consensus 258 ~~~~~d~v~vl~~G 271 (298)
+. .||+++.|...
T Consensus 857 ~~-~ad~~~~~~~~ 869 (880)
T PRK02224 857 VG-AADDLVRVEKD 869 (880)
T ss_pred HH-hcCeeEEeecC
Confidence 85 69999999644
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-09 Score=84.63 Aligned_cols=119 Identities=34% Similarity=0.486 Sum_probs=82.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCc-cEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPS-GTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK 167 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~-G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~ 167 (298)
++..+.|+||+|+||||+++.|+..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 467899999999999999999999987655 4555555433221111000
Q ss_pred CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH-----HHHHHHh
Q 022337 168 KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-----VLVKLKK 242 (298)
Q Consensus 168 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~-----~l~~l~~ 242 (298)
. ..........++++..+..+++|-..+|.++++||+..-.+......... .......
T Consensus 51 ----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (148)
T smart00382 51 ----------------L-IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS 113 (148)
T ss_pred ----------------h-hhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHh
Confidence 0 11223344677888888888888888899999999999999988877664 1222233
Q ss_pred cCCcEEEEEccC
Q 022337 243 KHGMTIVMVSHS 254 (298)
Q Consensus 243 ~~g~tii~itHd 254 (298)
..+..+|+++|.
T Consensus 114 ~~~~~~i~~~~~ 125 (148)
T smart00382 114 EKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEEeCC
Confidence 347889999984
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.9e-11 Score=114.25 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=71.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC---CEeCCCCCHH---
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD---GRDITDLDVL--- 134 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~---g~~i~~~~~~--- 134 (298)
.+.++.+++++.|..+..+++.++ +|.+|++++|+||||||||||+++|+++.+|+.|.|.+. |+++..+...
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 346899999999977778999996 999999999999999999999999999999999999886 4555433222
Q ss_pred H-HhcceEEEeCCCC
Q 022337 135 S-LRRKVGMLFQIPA 148 (298)
Q Consensus 135 ~-~~~~ig~v~Q~~~ 148 (298)
. +++.+++++|...
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 1 2357999999764
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-12 Score=124.20 Aligned_cols=158 Identities=20% Similarity=0.264 Sum_probs=105.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHH--hcCCCCCccEEEECCEeCCCCCHHHH---hcceEEEeCCCCCCcccHHHHhHh
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVFLDGRDITDLDVLSL---RRKVGMLFQIPALFEGTVVDNIRY 160 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l--~gl~~p~~G~I~i~g~~i~~~~~~~~---~~~ig~v~Q~~~l~~~tv~eni~~ 160 (298)
=+++|..+.|.||+|||||||..-. .|..++.+.-+++.... +..++ .+.+||-+++..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 3789999999999999999999876 56666566667776542 23333 3456665553210 001111
Q ss_pred CccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH--HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHH
Q 022337 161 GPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA--RTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA--ral~~~p~illLDEPts~LD~~~~~~~~~~l~ 238 (298)
... . ........++.++++ ++.++....+|+|++|||.|+ .+|...|+.. +..++.++++++
T Consensus 88 -~~~---~-~~~~~~~~~~~~~l~-~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~ 151 (484)
T TIGR02655 88 -LDA---S-PDPEGQDVVGGFDLS-ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVA 151 (484)
T ss_pred -Eec---C-chhccccccccCCHH-HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHH
Confidence 000 0 001111234555664 467777889999999999999 6666665543 567888999998
Q ss_pred HHHhcCCcEEEEEccCHHH---------HHhhcCEEEEEe
Q 022337 239 KLKKKHGMTIVMVSHSIKQ---------IQRIADVVCLLV 269 (298)
Q Consensus 239 ~l~~~~g~tii~itHd~~~---------~~~~~d~v~vl~ 269 (298)
.+++ .|+|+|+++|+.+. ...+||.|+.|+
T Consensus 152 ~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 152 RLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 8865 59999999998764 256789999887
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=114.49 Aligned_cols=169 Identities=18% Similarity=0.268 Sum_probs=104.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
++++.++.+++|.+++++|||||||||++..|++.+.+.+|. ++|+++.+++ |..++.|++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHH
Confidence 566777888899999999999999999999999987665553 2578898887 556889999
Q ss_pred HhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHH-HHHHHHHHcCCC-----CeEEEeCcCCCCCHHHH
Q 022337 159 RYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQ-RVALARTLANEP-----EVLLLDEPTSALDPIST 230 (298)
Q Consensus 159 ~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ-Rv~iAral~~~p-----~illLDEPts~LD~~~~ 230 (298)
.+.....+.+. .....+......++.+ .....+.+...+|+- .+.-+.+++.++ .+|+||.++.+
T Consensus 306 r~~AeilGVpv~~~~~~~Dl~~aL~~L~d-~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------ 378 (484)
T PRK06995 306 RIYGKILGVPVHAVKDAADLRLALSELRN-KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------ 378 (484)
T ss_pred HHHHHHhCCCeeccCCchhHHHHHHhccC-CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------
Confidence 87544433221 1122223334445532 233345554434432 233444444444 68999999887
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccC---------HHHHHhhcCEEEEEeCCEEE
Q 022337 231 QNIEDVLVKLKKKHGMTIVMVSHS---------IKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 231 ~~~~~~l~~l~~~~g~tii~itHd---------~~~~~~~~d~v~vl~~G~i~ 274 (298)
..+.+.++.+.. .+.+-++.|+- ++.+.++-=-|.++-.|+=+
T Consensus 379 ~~l~~i~~~f~~-~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 379 DTLNEVVQAYRG-PGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred HHHHHHHHHhcc-CCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 334445555543 36666666652 22333333447778888644
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-10 Score=110.54 Aligned_cols=181 Identities=22% Similarity=0.283 Sum_probs=110.4
Q ss_pred eCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---H-----HHhcceEEEe
Q 022337 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---L-----SLRRKVGMLF 144 (298)
Q Consensus 73 y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~-----~~~~~ig~v~ 144 (298)
|..+..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.+...|+.-.+... . .+++.+-++.
T Consensus 147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 33456799999 9999999999999999999999999999999999888776664333211 0 0112222322
Q ss_pred CCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCCh-hHHHHHHHHHHHcCCCCeEEEeCc--
Q 022337 145 QIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV-GQAQRVALARTLANEPEVLLLDEP-- 221 (298)
Q Consensus 145 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-GqkQRv~iAral~~~p~illLDEP-- 221 (298)
+... +..+-..-+. .--.+.+.+...|-+- + -...+|+- -|-+| .|+ +.+.||
T Consensus 226 ~~d~----~p~~r~~~~~-------~a~t~AE~frd~G~~V-l--l~~DslTr~A~A~R-Eis---------l~~ge~P~ 281 (440)
T TIGR01026 226 TSDQ----SPLLRLKGAY-------VATAIAEYFRDQGKDV-L--LLMDSVTRFAMAQR-EIG---------LAAGEPPA 281 (440)
T ss_pred CCCC----CHHHHHHHHH-------HHHHHHHHHHHCCCCE-E--EEEeChHHHHHHHH-HHH---------HhcCCCCc
Confidence 2111 1111111000 0001112222223210 0 00112221 11222 122 223564
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCc-------EEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGM-------TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~-------tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+.|.||.....+.+++.+.... +. ||++.+||+. ..+||++..+.+|+|+.+....+
T Consensus 282 ~~Gypp~~~~~l~~l~ERag~~-~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 282 TKGYTPSVFSTLPRLLERAGAS-GKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred ccccChhHHHHHHHHHHHhccC-CCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchhh
Confidence 5689999999999999987643 67 8999999985 45799999999999998877654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-10 Score=97.79 Aligned_cols=119 Identities=23% Similarity=0.281 Sum_probs=73.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCcc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLT 170 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 170 (298)
++.|.||+||||||+++.|++.+.+. .|.|...+.++. +. .....+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~---~~~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FV---HESKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cc---ccCccceeeecc-----------------------
Confidence 68899999999999999998888644 567665443321 10 000111111100
Q ss_pred HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 022337 171 ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250 (298)
Q Consensus 171 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~ 250 (298)
++.+ ...++ =+++++|..+|+++++|||. |+.....+ ++ .+. .|..++.
T Consensus 56 ----------vg~~-------~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~-~a~-~G~~v~~ 104 (198)
T cd01131 56 ----------VGLD-------TLSFE------NALKAALRQDPDVILVGEMR---DLETIRLA---LT-AAE-TGHLVMS 104 (198)
T ss_pred ----------cCCC-------ccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHHH---HH-HHH-cCCEEEE
Confidence 0100 01111 14889999999999999996 66543333 32 333 3889999
Q ss_pred EccCHHHHHhhcCEEEEEe
Q 022337 251 VSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 251 itHd~~~~~~~~d~v~vl~ 269 (298)
++|..+.. ...+|++.+.
T Consensus 105 t~Ha~~~~-~~~~Rl~~l~ 122 (198)
T cd01131 105 TLHTNSAA-KTIDRIIDVF 122 (198)
T ss_pred EecCCcHH-HHHhHHHhhc
Confidence 99998765 4568876553
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-10 Score=102.29 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=41.7
Q ss_pred HHcCCCCeEEEeCcCCC------CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 208 TLANEPEVLLLDEPTSA------LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 208 al~~~p~illLDEPts~------LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
+...+|+++++| |+++ +|+.....+++.|.+++++.|.|||+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 346899999999 7754 79999999999999998877999999999874
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-10 Score=106.13 Aligned_cols=63 Identities=32% Similarity=0.453 Sum_probs=57.4
Q ss_pred CCCChhHHHHHHHHHHHcC---------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 193 GEISVGQAQRVALARTLAN---------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral~~---------~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
..+|.||+|+++||.+|+. +|+|||||||+++||+..++.+++.|.+. |.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence 3789999999999999999 99999999999999999999999998753 679999999987654
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.5e-10 Score=97.34 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=68.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccC--CCc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG--KKL 169 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~--~~~ 169 (298)
++||.||||||||||.++|.+++ ..|.+.+-+.| ....+.+..+........+. ...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999998 33444333332 11111111111111100000 111
Q ss_pred cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH
Q 022337 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 228 (298)
Q Consensus 170 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~ 228 (298)
+.+...+.+..+... ...+.+..++|.|++++..+ .+.+|+++|+|+|+.+.++.
T Consensus 60 ~~~~~~~~l~~l~~~-~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKNG-KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHCC-CCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 233444566655553 24566778999999877655 57889999999999999873
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-10 Score=109.27 Aligned_cols=86 Identities=21% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc---EEEECCEeCCCCCHHH------HhcceEEEeCC
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG---TVFLDGRDITDLDVLS------LRRKVGMLFQI 146 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G---~I~i~g~~i~~~~~~~------~~~~ig~v~Q~ 146 (298)
+..+++++ |++.+|++++|+|+||||||||+++|+|+.+|+.+ .|-.+|.++.++.... .+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45799999 99999999999999999999999999999999864 3334444443322111 13469999999
Q ss_pred CCCCc-ccHHHHhHhCc
Q 022337 147 PALFE-GTVVDNIRYGP 162 (298)
Q Consensus 147 ~~l~~-~tv~eni~~~~ 162 (298)
...+. .++.++..+..
T Consensus 221 ~s~~~rl~a~e~a~~iA 237 (434)
T PRK07196 221 ESPLMRIKATELCHAIA 237 (434)
T ss_pred CChhhhHHHHHHHHHHH
Confidence 98776 48888887543
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-08 Score=107.01 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=55.7
Q ss_pred HHHHHcCCCCeEEEeCcCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh--hcCEEEEEeCCEEE
Q 022337 205 LARTLANEPEVLLLDEPTSAL-DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR--IADVVCLLVNGEIV 274 (298)
Q Consensus 205 iAral~~~p~illLDEPts~L-D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~--~~d~v~vl~~G~i~ 274 (298)
|++++..+|+++++|||+.+| |+..++.+.+.++.+.+. |.+++++||+++.+.. .++.++-..+.+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~-g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKA-NCLVLMATQSLSDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHhhCchHHHHHHcCCccee
Confidence 678889999999999999999 799999999999998765 8899999999998875 23333333344444
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-10 Score=102.78 Aligned_cols=58 Identities=19% Similarity=0.389 Sum_probs=39.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHh-cCCCCCccEEEECCEeCCCCCHHH---HhcceEEEeCCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALN-RLWEPPSGTVFLDGRDITDLDVLS---LRRKVGMLFQIP 147 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~-gl~~p~~G~I~i~g~~i~~~~~~~---~~~~ig~v~Q~~ 147 (298)
=+++|+++.|.||+|||||||...++ ...++.++-+++.... +... ..+.+|+.+|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~----~~~~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE----SRESIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHhCCCHHHH
Confidence 48899999999999999999988654 2334555667776532 2222 234566666643
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-10 Score=95.97 Aligned_cols=82 Identities=21% Similarity=0.160 Sum_probs=61.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCC--CCc-ccHH
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA--LFE-GTVV 155 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~--l~~-~tv~ 155 (298)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... ..+..+++++|... .++ .+..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL---PHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC---CCCCEEEEEEecCCCCCCCccCHH
Confidence 44556678999999999999999999999999999999999999976432221 12345777776553 334 4888
Q ss_pred HHhHhCcc
Q 022337 156 DNIRYGPQ 163 (298)
Q Consensus 156 eni~~~~~ 163 (298)
+.+...++
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 88876554
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.7e-09 Score=100.47 Aligned_cols=77 Identities=30% Similarity=0.286 Sum_probs=62.9
Q ss_pred CCCChhHHHHHHHHHHHc---------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 193 GEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral~---------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
..+|+||++++++|+.|+ .+|+++|||||+++||+..+..+.+.|.... .++|-.|+ ....||
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~it~t~----~~~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----QAIVAGTE----APPGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEEEEcCC----CCCCCc
Confidence 368999999999999999 8999999999999999999999999886532 24444443 335799
Q ss_pred EEEEEeCCEEEEee
Q 022337 264 VVCLLVNGEIVEVL 277 (298)
Q Consensus 264 ~v~vl~~G~i~~~g 277 (298)
+++.+.+|++....
T Consensus 334 ~~~~~~~~~~~~~~ 347 (349)
T PRK14079 334 LTLRIEAGVFTPEA 347 (349)
T ss_pred eEEEEeccEecCCC
Confidence 99999999876443
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.4e-09 Score=110.13 Aligned_cols=80 Identities=28% Similarity=0.351 Sum_probs=68.6
Q ss_pred CCCCCCChhHHHHHHHHHHH------cCC--CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh
Q 022337 190 KTGGEISVGQAQRVALARTL------ANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~iAral------~~~--p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~ 261 (298)
+.+.+|||||+=.++||-+| ..+ -++++|||||..||+.+.+.+++.|..+... +.+|+||||+-++. ..
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~eel~-e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEELK-ER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHH-Hh
Confidence 57889999999877776665 456 6999999999999999999999999999765 89999999998766 56
Q ss_pred cCEEEEEeCC
Q 022337 262 ADVVCLLVNG 271 (298)
Q Consensus 262 ~d~v~vl~~G 271 (298)
+|.++.++..
T Consensus 889 ~~~~i~V~k~ 898 (908)
T COG0419 889 ADVRIRVKKD 898 (908)
T ss_pred CCeEEEEEec
Confidence 8998888653
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-09 Score=115.61 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=56.1
Q ss_pred hcCCCCCCChhHHHHHH----HHHH--------HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 188 LNKTGGEISVGQAQRVA----LART--------LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~----iAra--------l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
.++..+.||||||||++ +|++ +..+|++++|||||++||+.++..+++++.++ |.++||+||++
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 34457899999999996 5755 55899999999999999999999999999887 68899999985
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-09 Score=104.12 Aligned_cols=171 Identities=20% Similarity=0.254 Sum_probs=104.3
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECC---EeCCCCCHHHHh---cceEEE-----
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDG---RDITDLDVLSLR---RKVGML----- 143 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g---~~i~~~~~~~~~---~~ig~v----- 143 (298)
+..+++++ |++.+|+.++|+|+||||||||+++|+|+.++ +.|.|.+.| +++.++....++ .+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 34589888 99999999999999999999999999999854 446676644 555443322222 345566
Q ss_pred eCCCC--CCc----ccHHHHhHhCcccc-CCCccHHHHHHHHHHcCCC----chhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 144 FQIPA--LFE----GTVVDNIRYGPQLR-GKKLTENEVYKLLSLADLD----SSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 144 ~Q~~~--l~~----~tv~eni~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+|+|. +-+ .++.|.+...-... -...+..++.++++.+++. +.....+|+.||. ++|-+=+-
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~-------l~~llERa 302 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST-------LPKLLERS 302 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH-------hHHHHHHh
Confidence 89874 222 25566665321100 0123456788999999983 3456778888773 22211000
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
-+. + + .-|-.+ -||.+..+|+++. ++|.+.-+-||+|+.+..
T Consensus 303 g~~----~---~----------GSITai-----~tVl~~gdD~~dp--i~d~~~~i~dg~ivLsr~ 344 (442)
T PRK06315 303 GAS----D---K----------GTITAF-----YTVLVAGDDMNEP--VADEVKSILDGHIVLSNA 344 (442)
T ss_pred cCC----C---C----------cceeee-----EEEEecCCCCCcc--cHHHhhhhcceEEEEecc
Confidence 000 0 0 001101 2456666777654 678888888899886644
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-09 Score=90.25 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh-cceEEEeCCCCCCc-ccHHHHhHhC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR-RKVGMLFQIPALFE-GTVVDNIRYG 161 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~-~~ig~v~Q~~~l~~-~tv~eni~~~ 161 (298)
+||+++|+|+||||||||+++|+|++.| +.++|.++... ...+ ...|+.+|+...++ .++..|+.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999999987 68899887532 2222 24677777755444 3677777654
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=108.05 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=83.8
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHh
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRY 160 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~ 160 (298)
=+++..+++++++|+|++|+|||||++.+.+-+ ...+|.+++++..+.. .. .. +-.+++..+ +...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~-~~----~~--~~~~~~~~~------~~~~ 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK-SM----EI--YSSANPDDY------NMKL 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc-ch----hh--ccccccccc------chhH
Confidence 356788899999999999999999999995544 4568999987633221 00 00 001111100 0000
Q ss_pred CccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHH
Q 022337 161 GPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l 240 (298)
. ...+.+.++++..++. ...+ ++.++| |..++-+|+||+- |.. ..++.+...
T Consensus 266 ~-------l~~~~l~~il~~~~~~-------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~ 317 (1153)
T PLN03210 266 H-------LQRAFLSEILDKKDIK-------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQ 317 (1153)
T ss_pred H-------HHHHHHHHHhCCCCcc-------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhh
Confidence 0 0012233333333331 1122 555665 3466678888984 332 334444433
Q ss_pred Hh--cCCcEEEEEccCHHHHHhh-cCEEEEEe
Q 022337 241 KK--KHGMTIVMVSHSIKQIQRI-ADVVCLLV 269 (298)
Q Consensus 241 ~~--~~g~tii~itHd~~~~~~~-~d~v~vl~ 269 (298)
.+ ..|.+||++|||...+... +|+++.+.
T Consensus 318 ~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 318 TQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred CccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 21 2488999999999988654 67776653
|
syringae 6; Provisional |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.1e-08 Score=103.17 Aligned_cols=138 Identities=22% Similarity=0.252 Sum_probs=86.9
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
..|-+|+++. +.+.++.|.|||++||||+||.++-.. -.+-| .|||-...- .++.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G---------------------~~VPa~~a~--i~~~ 650 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG---------------------SFVPAESAR--IGIV 650 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC---------------------CceeccceE--eccc
Confidence 3566788887 677899999999999999999987532 11111 233322110 0111
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC--CCCeEEEeCc---CCCCCHHHH
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN--EPEVLLLDEP---TSALDPIST 230 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~--~p~illLDEP---ts~LD~~~~ 230 (298)
|.| ..++|-.+ .....+|--+.....++++|-+ ++.++|+||| |+.+|..+
T Consensus 651 d~I-------------------~triga~d----~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a- 706 (854)
T PRK05399 651 DRI-------------------FTRIGASD----DLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS- 706 (854)
T ss_pred Cee-------------------eeccCccc----ccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH-
Confidence 111 11223221 2233567766777777777655 8999999999 88888544
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 231 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 231 ~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
.....+..+.+..+.+++++||+.+ +..++++
T Consensus 707 -ia~aile~l~~~~~~~~l~aTH~~e-l~~l~~~ 738 (854)
T PRK05399 707 -IAWAVAEYLHDKIGAKTLFATHYHE-LTELEEK 738 (854)
T ss_pred -HHHHHHHHHHhcCCceEEEEechHH-HHHHhhh
Confidence 4555555555544689999999955 4467765
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-09 Score=89.95 Aligned_cols=55 Identities=29% Similarity=0.382 Sum_probs=45.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIP 147 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~ 147 (298)
|++++|+||||||||||+++|++...| .+.+.+..+........+..+++++|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888888776544444556788888875
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.9e-09 Score=99.73 Aligned_cols=73 Identities=25% Similarity=0.400 Sum_probs=61.0
Q ss_pred CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc---cEEEECCEeCCCCCHHHH----hcceEEEeCCC
Q 022337 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS---GTVFLDGRDITDLDVLSL----RRKVGMLFQIP 147 (298)
Q Consensus 75 ~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~---G~I~i~g~~i~~~~~~~~----~~~ig~v~Q~~ 147 (298)
.+..+++++ +++.+|++++|+|+||+|||||+++|++...++. |.|..+|+++..+..... ++++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 355799999 9999999999999999999999999999999987 999999998865433322 35788888765
Q ss_pred C
Q 022337 148 A 148 (298)
Q Consensus 148 ~ 148 (298)
.
T Consensus 216 d 216 (428)
T PRK08149 216 D 216 (428)
T ss_pred C
Confidence 3
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.3e-08 Score=79.99 Aligned_cols=138 Identities=15% Similarity=0.162 Sum_probs=77.0
Q ss_pred EEEEcCCCccHHHHHHHHh--cCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCC-CCC-C----------------c-
Q 022337 93 MGIIGPSGSGKSTLLRALN--RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI-PAL-F----------------E- 151 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~--gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~-~~l-~----------------~- 151 (298)
++++|++|||||||++.|. +...+.+|++... ....... ... .+++-+ |.+ + .
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t-~~~~~~~---~~~--~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~ 75 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKT-QLINFFN---VND--KFRLVDLPGYGYAKVSKEVKEKWGKLIEEY 75 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcc-eeEEEEE---ccC--eEEEecCCCccccccCHHHHHHHHHHHHHH
Confidence 6899999999999999999 7777777664221 1110000 000 111111 110 0 0
Q ss_pred ccHHHHhHhCccc--cCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH-----HcCCCCeEEEeCcC
Q 022337 152 GTVVDNIRYGPQL--RGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART-----LANEPEVLLLDEPT 222 (298)
Q Consensus 152 ~tv~eni~~~~~~--~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra-----l~~~p~illLDEPt 222 (298)
.+..+|+...... ... .....++.+.+...+.+--+...+...+|++++++...... ....|+++ |+
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~ 151 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LF 151 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EE
Confidence 0122232221111 011 11223455666666643223344566789998887765554 24456666 99
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 022337 223 SALDPISTQNIEDVLVKL 240 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l 240 (298)
|++|+....++++.|.++
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-08 Score=98.66 Aligned_cols=111 Identities=23% Similarity=0.227 Sum_probs=76.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc--------EEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhH
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG--------TVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR 159 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G--------~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~ 159 (298)
...+.++|+||||+|||||++++.++.++..| -|.++|..+. ++...+ .+..
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~l 232 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPL 232 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHh
Confidence 34567999999999999999999999875444 4666665442 121111 1112
Q ss_pred hCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHH
Q 022337 160 YGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 239 (298)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~ 239 (298)
++.. .......+.+.++..|+. ......+.++||| +|++|| +..||+..+..+++.+.+
T Consensus 233 lg~~---~~~~~~~a~~~l~~~gl~-~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 233 LGSV---HDPIYQGARRDLAETGVP-EPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred cCCc---cHHHHHHHHHHHHHcCCC-chhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 2210 001122345567788886 4667788899999 999999 799999999999999875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-08 Score=97.90 Aligned_cols=137 Identities=21% Similarity=0.313 Sum_probs=85.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccE-EEECCEeCCCCCHHHHh---cceEEEeCCCCCCcccHHHHhHhC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-VFLDGRDITDLDVLSLR---RKVGMLFQIPALFEGTVVDNIRYG 161 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~-I~i~g~~i~~~~~~~~~---~~ig~v~Q~~~l~~~tv~eni~~~ 161 (298)
=+.+|+++.|.|++|+|||||+..++.......+. +++.+++- ...++ +++++.++ |+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs----~~qi~~ra~rlg~~~~-----------~l~~~ 154 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES----LQQIKMRAIRLGLPEP-----------NLYVL 154 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC----HHHHHHHHHHcCCChH-----------HeEEc
Confidence 48999999999999999999999998766544444 46666532 22211 22332111 11110
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC---------CHHHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL---------DPISTQN 232 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L---------D~~~~~~ 232 (298)
. +.+-. +-...+ --.+|+++++|.-++=. +....++
T Consensus 155 ~-------------------------------e~~~~--~I~~~i--~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~ 199 (454)
T TIGR00416 155 S-------------------------------ETNWE--QICANI--EEENPQACVIDSIQTLYSPDISSAPGSVSQVRE 199 (454)
T ss_pred C-------------------------------CCCHH--HHHHHH--HhcCCcEEEEecchhhcccccccCCCCHHHHHH
Confidence 0 00000 000011 12478999999765421 1334566
Q ss_pred HHHHHHHHHhcCCcEEEEEccCHHH--------HHhhcCEEEEEeCCE
Q 022337 233 IEDVLVKLKKKHGMTIVMVSHSIKQ--------IQRIADVVCLLVNGE 272 (298)
Q Consensus 233 ~~~~l~~l~~~~g~tii~itHd~~~--------~~~~~d~v~vl~~G~ 272 (298)
+...|.+++++.|.|+++++|.... +..++|.|+.|+.++
T Consensus 200 ~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 200 CTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred HHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 6777888888889999999996543 677899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-07 Score=94.27 Aligned_cols=52 Identities=25% Similarity=0.504 Sum_probs=45.4
Q ss_pred HHcCCCCeEEEeCcCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh
Q 022337 208 TLANEPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260 (298)
Q Consensus 208 al~~~p~illLDEPts~LD-~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~ 260 (298)
.+..+|.++++|||...|| +...+.+.+.++++.+. |..++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKL-NTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHh
Confidence 4567899999999999999 88899999999998754 8899999999987543
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-08 Score=96.95 Aligned_cols=80 Identities=23% Similarity=0.188 Sum_probs=63.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
-++.+.-.+.+|++++|+|+||+|||||++.|+|...|+.|+|.+++..-.. ...++.+++++|+..+++.+...++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566666788999999999999999999999999999999999998754221 1235679999998888876666666
Q ss_pred HhC
Q 022337 159 RYG 161 (298)
Q Consensus 159 ~~~ 161 (298)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 543
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-08 Score=86.68 Aligned_cols=49 Identities=35% Similarity=0.538 Sum_probs=40.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC------------CCccEEEECCEeCCCCCHHHHhc
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE------------PPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++...+..++++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~ 63 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEE 63 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHH
Confidence 5899999999999999999999999985 77788 5787776555554443
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-08 Score=86.20 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCchhhcCCCCCCChhHHHHHH--HHHHHcC-CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhc
Q 022337 173 EVYKLLSLADLDSSFLNKTGGEISVGQAQRVA--LARTLAN-EPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243 (298)
Q Consensus 173 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~--iAral~~-~p~illLDEPts~LD~~~~~~~~~~l~~l~~~ 243 (298)
++.+.++..++.--+...++..+|+|++|++. +++.+-. +++++ |+|++|+.+.+++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 35556666666423445567789999999987 6666644 34443 99999999999999999987653
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-08 Score=89.77 Aligned_cols=63 Identities=32% Similarity=0.440 Sum_probs=40.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE 151 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~ 151 (298)
++|++++|+||||||||||++.|++++++ ..+.+..|+.-. .......+.+.++.+|.+..++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 67 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK-DQSHLEMAERKKTNFDHPDAFD 67 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc-ChhhCCHHHhcCCCCCCccHhH
Confidence 67999999999999999999999999876 222333333211 1111112344666677665444
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-08 Score=95.67 Aligned_cols=115 Identities=22% Similarity=0.227 Sum_probs=70.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC--Cc-cEEEECCEeCCCCCHHHHhcceEEEeCCCC-----CCcccHHHHhH
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP--PS-GTVFLDGRDITDLDVLSLRRKVGMLFQIPA-----LFEGTVVDNIR 159 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~-G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~-----l~~~tv~eni~ 159 (298)
++|..++|+||+||||||+++.|++.+.+ .. +.|.....++ ++....++...+++.|... -|...+++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48899999999999999999999999853 33 4565544444 3444444455678888642 23346677666
Q ss_pred hCccc--cCCCccHHHHHHHHHHcCCC------------chhhcCCCCCCChhHHHHH
Q 022337 160 YGPQL--RGKKLTENEVYKLLSLADLD------------SSFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 160 ~~~~~--~~~~~~~~~~~~~l~~~~l~------------~~~~~~~~~~LSgGqkQRv 203 (298)
..+.. .+.-.+.+.+..+++...-. .....+....+|+||+--+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~ 268 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR 268 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence 55432 12222344455566653210 1234555667888887544
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-08 Score=84.43 Aligned_cols=132 Identities=20% Similarity=0.301 Sum_probs=93.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccH
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE 171 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 171 (298)
+++|+|..||||||+.+.+.-.. |-..++- ..+...+.-. ..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~----~~~~i~~--------------------------D~~~~~~~~~--------~~ 42 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY----HFPVIDA--------------------------DKIAHQVVEK--------GS 42 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc----CCeEEeC--------------------------CHHHHHHHhc--------CC
Confidence 47999999999999999998653 1112211 1111111110 01
Q ss_pred HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 022337 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251 (298)
Q Consensus 172 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~i 251 (298)
+-..++.+.+|- .+.+. .|+-+|..||.++..+|+.+..+| +.+||...+++.+.+.+..+ .|.+|++.
T Consensus 43 ~~~~~i~~~fg~--~i~~~------~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~-~~~~vvi~ 111 (188)
T TIGR00152 43 PAYEKIVDHFGA--QILNE------DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQS-KLAYVLLD 111 (188)
T ss_pred hHHHHHHHHHCH--HHhCC------CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhc-CCCEEEEE
Confidence 112344555663 23321 388999999999999999988887 78999999999999988754 36799999
Q ss_pred ccCHHH--HHhhcCEEEEEeCCE
Q 022337 252 SHSIKQ--IQRIADVVCLLVNGE 272 (298)
Q Consensus 252 tHd~~~--~~~~~d~v~vl~~G~ 272 (298)
+|.+.+ +..+||++++++.+.
T Consensus 112 ~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 112 VPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred chHhhhCCcHHhCCEEEEEECCH
Confidence 999954 778899999998764
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.4e-07 Score=87.85 Aligned_cols=114 Identities=24% Similarity=0.264 Sum_probs=70.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
..++..+.|.||+||||||+++.+.+.+. +.+|.|...+.++.- . .....+++.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~-~---~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY-V---HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh-h---ccCccceEEcc-------------------
Confidence 35688999999999999999999998765 446777654433210 0 00000000000
Q ss_pred CCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCC
Q 022337 166 GKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245 (298)
Q Consensus 166 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g 245 (298)
..+.. . .+ -.-++++||-.+|+++++||+. |+.+....++. +. .|
T Consensus 176 --------------evg~~-------~--~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a~-tG 220 (343)
T TIGR01420 176 --------------EVGLD-------T--LS----FANALRAALREDPDVILIGEMR---DLETVELALTA----AE-TG 220 (343)
T ss_pred --------------ccCCC-------C--cC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----HH-cC
Confidence 01110 0 01 1224678899999999999997 88877654442 23 38
Q ss_pred cEEEEEccCHHHH
Q 022337 246 MTIVMVSHSIKQI 258 (298)
Q Consensus 246 ~tii~itHd~~~~ 258 (298)
.+++.+.|..+..
T Consensus 221 h~v~~T~Ha~~~~ 233 (343)
T TIGR01420 221 HLVFGTLHTNSAA 233 (343)
T ss_pred CcEEEEEcCCCHH
Confidence 8999999985433
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-08 Score=96.63 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=58.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
.++.++++..+..+..+++++ |++.+|+.++|+|+||+|||||+++|+|+.+|+.|.+.+.|+.-
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRg 193 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG 193 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCc
Confidence 477888888886677899999 99999999999999999999999999999999999888877643
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.7e-08 Score=91.74 Aligned_cols=137 Identities=19% Similarity=0.349 Sum_probs=84.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-EECCEeCCCCCHHHHh---cceEEEeCCCCCCcccHHHHhHhC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDGRDITDLDVLSLR---RKVGMLFQIPALFEGTVVDNIRYG 161 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-~i~g~~i~~~~~~~~~---~~ig~v~Q~~~l~~~tv~eni~~~ 161 (298)
=+.+|+++.|.|++|+|||||+..++.......+.+ ++.+++ +...++ +++++.+++ +.+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE----s~~qi~~Ra~rlg~~~~~-----------l~l~ 142 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE----SPEQIKLRADRLGISTEN-----------LYLL 142 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc----CHHHHHHHHHHcCCCccc-----------EEEE
Confidence 388999999999999999999999988776655666 445543 111111 223322211 1100
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC----CCC-----HHHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS----ALD-----PISTQN 232 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts----~LD-----~~~~~~ 232 (298)
. ... ++++++ ..--.+|+++++|+-.+ .+| ....++
T Consensus 143 ~-----e~~---le~I~~---------------------------~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~ 187 (372)
T cd01121 143 A-----ETN---LEDILA---------------------------SIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRE 187 (372)
T ss_pred c-----cCc---HHHHHH---------------------------HHHhcCCcEEEEcchHHhhccccccCCCCHHHHHH
Confidence 0 000 111110 01125899999999632 232 234456
Q ss_pred HHHHHHHHHhcCCcEEEEEccCHH--------HHHhhcCEEEEEeCCE
Q 022337 233 IEDVLVKLKKKHGMTIVMVSHSIK--------QIQRIADVVCLLVNGE 272 (298)
Q Consensus 233 ~~~~l~~l~~~~g~tii~itHd~~--------~~~~~~d~v~vl~~G~ 272 (298)
+...|.+++++.+.|++++.|-.. .++.++|.|+.++..+
T Consensus 188 ~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~ 235 (372)
T cd01121 188 CTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 235 (372)
T ss_pred HHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCC
Confidence 667778888888999999988432 3678899999987543
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.3e-08 Score=90.92 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=50.6
Q ss_pred EEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe
Q 022337 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD 127 (298)
Q Consensus 69 l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~ 127 (298)
++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.+..-|++
T Consensus 49 ~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 49 IDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred ceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 444555567899999 9999999999999999999999999999999999988876654
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-08 Score=91.36 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=56.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC------HHHHhcceEEEeCCCCCCcc-cHHHHhHh
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD------VLSLRRKVGMLFQIPALFEG-TVVDNIRY 160 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~------~~~~~~~ig~v~Q~~~l~~~-tv~eni~~ 160 (298)
++|++++++|||||||||++..|++.+.+..|+|.+.+.|..+.. ....+..+.+++|.....+. ++++++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 579999999999999999999999999998899999887764321 11235568999986554443 56676653
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=80.40 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=44.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE-----------CCEeCCCCCHHHH-----hcceEEEeCCCCCCcc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL-----------DGRDITDLDVLSL-----RRKVGMLFQIPALFEG 152 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i-----------~g~~i~~~~~~~~-----~~~ig~v~Q~~~l~~~ 152 (298)
|++++|+||||||||||++.|++.+.+. |.+.+ +|.+....+..++ .+.++.++|.+..+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 55544 4555444443333 2348888887765543
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-08 Score=96.83 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=57.1
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
+.|+++.| +...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~-Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVI-GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEE-CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45888888 4567999999999999999999999999999999999999999999999877664
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-07 Score=91.20 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=49.7
Q ss_pred eEEEEeEEEEeCCCCccee-----------eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 63 KFRVRELRKESDDGAPILK-----------GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~-----------~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.++++||++.|++++.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 5899999999987677897 99999999999999999999999999999998753
|
Members of this family differ in the specificity of RNA binding. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.8e-07 Score=81.44 Aligned_cols=177 Identities=21% Similarity=0.218 Sum_probs=97.8
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhcce-EEEeCCCCCCcccH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRRKV-GMLFQIPALFEGTV 154 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~i-g~v~Q~~~l~~~tv 154 (298)
.+.|+++.--+.+|+++.|.|++|+|||||+..++.-.-.. ...|.+-.-+ .+..++.+++ +.....+.....+
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E---~~~~~~~~r~~~~~~~~~~~~~~~- 92 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE---EPVVRTARRLLGQYAGKRLHLPDT- 92 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc---cCHHHHHHHHHHHHhCCCcccCCc-
Confidence 35688887789999999999999999999998876544323 2244332221 1222222111 1100000000000
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcC-CCchhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCCHH---
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLAD-LDSSFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDPI--- 228 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD~~--- 228 (298)
......+++.++++.+. ...-+........+ ....+..++.++ .+|+++++|..+.-.+..
T Consensus 93 -----------~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~ 159 (271)
T cd01122 93 -----------VFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERAS 159 (271)
T ss_pred -----------cccccHHHHHHHHHHhcCCCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCc
Confidence 00112334444444332 11001111122222 234445555554 479999999977654331
Q ss_pred -----HHHHHHHHHHHHHhcCCcEEEEEccCHH----------------------HHHhhcCEEEEEeC
Q 022337 229 -----STQNIEDVLVKLKKKHGMTIVMVSHSIK----------------------QIQRIADVVCLLVN 270 (298)
Q Consensus 229 -----~~~~~~~~l~~l~~~~g~tii~itHd~~----------------------~~~~~~d~v~vl~~ 270 (298)
....++..|++++++.++|+++++|--. .+...||-|+.|+.
T Consensus 160 ~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r 228 (271)
T cd01122 160 GDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALER 228 (271)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEe
Confidence 2346667788888888999999998321 46678899988863
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.55 E-value=8e-07 Score=71.31 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEccCHH
Q 022337 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK----KHGMTIVMVSHSIK 256 (298)
Q Consensus 200 kQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~----~~g~tii~itHd~~ 256 (298)
.+......+...++.++++||.-.. ++.....+.+.+..... ..+..+|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5666667777889999999998775 66677788888887643 24788999998754
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=91.33 Aligned_cols=82 Identities=22% Similarity=0.253 Sum_probs=61.5
Q ss_pred EEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH--HHH----hcceEE
Q 022337 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV--LSL----RRKVGM 142 (298)
Q Consensus 69 l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~--~~~----~~~ig~ 142 (298)
++..+..+..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.+...|++-.+... +.. ....++
T Consensus 125 i~~~l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tv 203 (422)
T TIGR02546 125 IDQPLPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSV 203 (422)
T ss_pred cccccCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceE
Confidence 333444456799999 9999999999999999999999999999999999999886654333211 011 123577
Q ss_pred EeCCCCCCc
Q 022337 143 LFQIPALFE 151 (298)
Q Consensus 143 v~Q~~~l~~ 151 (298)
+++++..++
T Consensus 204 vv~~~s~~p 212 (422)
T TIGR02546 204 LVVSTSDRP 212 (422)
T ss_pred EEeccccCC
Confidence 888776554
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-07 Score=83.15 Aligned_cols=133 Identities=22% Similarity=0.338 Sum_probs=75.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcC-CCCC------ccEEEECCEeCCCCCHHHHh---cceEEEeCCCCCCcccHHH
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRL-WEPP------SGTVFLDGRDITDLDVLSLR---RKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl-~~p~------~G~I~i~g~~i~~~~~~~~~---~~ig~v~Q~~~l~~~tv~e 156 (298)
+++|+++.|.||+|||||||+..++.. ..|. .+-++++.++- .+...+. +..++ ....+.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~--~~~~rl~~~~~~~~~-------~~~~~~~ 86 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT--FRPERLVQIAERFGL-------DPEEVLD 86 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC--cCHHHHHHHHHHhcc-------ChHhHhc
Confidence 789999999999999999999988743 3343 67788877652 2222221 12222 1123444
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC----CH----H
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL----DP----I 228 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L----D~----~ 228 (298)
++.+... .+.+...+.++.+. ....+. .+|+++++|--++-. +. .
T Consensus 87 ~i~~~~~-----~~~~~l~~~l~~l~---~~l~~~-------------------~~~~liVIDSis~~~~~~~~~~~~~~ 139 (235)
T cd01123 87 NIYVARA-----YNSDHQLQLLEELE---AILIES-------------------SRIKLVIVDSVTALFRAEFDGRGELA 139 (235)
T ss_pred CEEEEec-----CCHHHHHHHHHHHH---HHHhhc-------------------CCeeEEEEeCcHHHHHHHhcCCccHH
Confidence 4433210 11122222222110 011000 178999999887621 11 1
Q ss_pred HH----HHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 229 ST----QNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 229 ~~----~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
.+ .++...|++++++.+.+||++.|-.
T Consensus 140 ~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 140 ERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 12 3556677777777899999998753
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-07 Score=85.10 Aligned_cols=135 Identities=21% Similarity=0.317 Sum_probs=82.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCC-C-----CccEE-EECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWE-P-----PSGTV-FLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p-----~~G~I-~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
=|++|+++.|.||||||||||...++.... | ..|.+ +|+++.. +++++ +..++|.+.+.+.++.+|+
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er----i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER----IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH----HHHHHHHhCCChHhHhhce
Confidence 488999999999999999999999987555 4 45666 7777653 23322 3344555555555777887
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH-cCCCCeEEEeCcCCCCC--------HHH
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL-ANEPEVLLLDEPTSALD--------PIS 229 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral-~~~p~illLDEPts~LD--------~~~ 229 (298)
.+... .+.+...+.+.. ++..+ -.++++++.|=-++-.- ...
T Consensus 188 ~~~~~-----~~~e~~~~~l~~------------------------~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~ 238 (337)
T PTZ00035 188 AYARA-----YNHEHQMQLLSQ------------------------AAAKMAEERFALLIVDSATALFRVDYSGRGELAE 238 (337)
T ss_pred EEEcc-----CCHHHHHHHHHH------------------------HHHHhhccCccEEEEECcHHhhhhhccCcccHHH
Confidence 65421 111222222211 00001 13678999998776321 222
Q ss_pred H----HHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 230 T----QNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 230 ~----~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
+ .+++..|++++++.+.|+|++-|-.
T Consensus 239 r~~~l~~~~~~L~~la~~~~vavvvtNqv~ 268 (337)
T PTZ00035 239 RQQHLGKFLRALQKLADEFNVAVVITNQVM 268 (337)
T ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEecceE
Confidence 2 2355667777777899999887643
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.8e-08 Score=85.30 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=40.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccE----EEECCEeCCCCCHHHHhcceEEEeCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT----VFLDGRDITDLDVLSLRRKVGMLFQI 146 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~----I~i~g~~i~~~~~~~~~~~ig~v~Q~ 146 (298)
.+..++||.||||||||||++.|++++++++|. |.+|+... +. ..+...|++++.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~---~~-~~~~~~g~~~~~ 89 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL---DN-AVLDAHGLRPRK 89 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC---CH-HHHHhccccccc
Confidence 457799999999999999999999999999998 44444221 21 223345776653
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=92.21 Aligned_cols=51 Identities=27% Similarity=0.550 Sum_probs=44.0
Q ss_pred HHcCCCCeEEEeCcCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 208 TLANEPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 208 al~~~p~illLDEPts~LD-~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
.+-.+|+++++|||+.+|| +..++.+.+.++.+.+. |.+++++||+++.+.
T Consensus 631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKK-NVSVIFATQSLADID 682 (811)
T ss_pred HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHh
Confidence 3456899999999999999 78899999999998764 889999999998654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 298 | ||||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-34 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-33 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-31 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-31 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-30 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-30 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-30 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 9e-30 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-29 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-29 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-29 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-26 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-26 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-26 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-26 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-26 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-26 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-26 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 8e-26 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-26 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-25 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-25 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-25 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-25 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-24 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-24 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-24 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-24 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-24 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-24 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 6e-24 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-24 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-23 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-23 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 6e-23 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-23 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-22 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 5e-21 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-20 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-20 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-20 | ||
| 1g29_1 | 372 | Malk Length = 372 | 8e-20 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-19 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-19 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-19 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-19 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-18 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-18 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-18 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 6e-18 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 7e-18 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 6e-17 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 8e-17 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-16 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 5e-16 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-15 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-14 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-14 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-14 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-13 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 5e-13 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-12 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-12 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-12 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-12 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 8e-12 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-10 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-10 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-10 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-10 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-10 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-10 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-10 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-10 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-10 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-10 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-10 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-10 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-10 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-10 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 6e-10 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 7e-10 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-09 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 4e-09 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-07 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-07 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 9e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 6e-05 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 7e-05 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 8e-05 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 8e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 4e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 7e-04 |
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 2e-63
Identities = 88/225 (39%), Positives = 138/225 (61%), Gaps = 12/225 (5%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL--- 136
L V++ +P G I G+IG SG+GKSTL+R +N L P G+V +DG+++T L L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLNKTGG 193
RR++GM+FQ L TV N+ +L K + V +LLSL L +
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-GDKHDSYPS 162
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+S GQ QRVA+AR LA+ P+VLL D+ TSALDP +T++I ++L + ++ G+TI++++H
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
Query: 254 SIKQIQRIADVVCLLVNGEIVE---VLKPDLLSEAKHPMALRFLQ 295
+ ++RI D V ++ NGE++E V ++ S K P+A +F+Q
Sbjct: 223 EMDVVKRICDCVAVISNGELIEQDTVS--EVFSHPKTPLAQKFIQ 265
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 1e-60
Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 16/213 (7%)
Query: 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130
L+ +N+E+ G + I+GP+GSGK+TLLRA++ L P SG +F++G ++
Sbjct: 12 SGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGL-LPYSGNIFINGMEVRK 69
Query: 131 LDVLSLRRKVGMLFQIPALF--EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL 188
+ R + +P + TV D + +L K L + ++L L L
Sbjct: 70 I-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEEL--KGLDRDLFLEMLKALKLGEEIL 122
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
+ ++S GQ+ V + LA++PE++ LDEP +D V+ + K++G
Sbjct: 123 RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR----RHVISRYIKEYGKEG 178
Query: 249 VMVSHSIKQIQRIAD-VVCLLVNGEIVEVLKPD 280
++V+H + + + LV + +
Sbjct: 179 ILVTHELDMLNLYKEYKAYFLVGNRLQGPISVS 211
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 7e-60
Identities = 77/253 (30%), Positives = 130/253 (51%), Gaps = 20/253 (7%)
Query: 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG 119
+ +V EL DG LKG+NM I +G + I+G +G GKSTL + N + +P SG
Sbjct: 4 EDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 120 TVFLDGRDITD--LDVLSLRRKVGMLFQIPA--LFEGTVVDNIRYGPQLRGKKLTENE-- 173
+ D + I ++ LR +G++FQ P LF +V ++ +G L E+E
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK--LPEDEIR 121
Query: 174 --VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
V L ++ +K +S GQ +RVA+A L EP+VL+LDEPT+ LDP+
Sbjct: 122 KRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLK-PDLLSE 284
I +LV+++K+ G+TI++ +H I + D V ++ G ++ EV +++ +
Sbjct: 181 EIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRK 240
Query: 285 A--KHPMALRFLQ 295
+ P ++
Sbjct: 241 VNLRLPRIGHLME 253
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 4e-57
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 15/232 (6%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
L+ V++ I +G + + G +GSGKSTLL+ + L EP SG V DG + +R
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IR 77
Query: 138 RKVGMLFQIPA--LFEGTVVDNIRYGPQLRGKKLTENE-VYKLLSLADLDS-SFLNKTGG 193
R +G+ FQ P F V D + + + V K + LD SF ++
Sbjct: 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF 137
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+S G+ +RVA+A + +EP++L+LDEP LD ++ ++ K K G T++++SH
Sbjct: 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISH 196
Query: 254 SIKQIQRIADVVCLLVNGEIV------EVLK-PDLLSEAKHPMALRFLQLSG 298
I+ + D V +L G+ V E L+ D + +R L L G
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKG 248
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 2e-54
Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 16/209 (7%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
+L+G+ + G + ++GP+GSGKST+ L L++P G V LDG + D L
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK------- 190
+V + Q P LF + +NI YG + T E+ + + F++
Sbjct: 93 TQVAAVGQEPLLFGRSFRENIAYG---LTRTPTMEEITAVAMESGAH-DFISGFPQGYDT 148
Query: 191 ----TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
TG ++S GQ Q VALAR L +P +L+LD TSALD + ++ +L + +
Sbjct: 149 EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASR 208
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T+++++ + +R A + L G + E
Sbjct: 209 TVLLITQQLSLAER-AHHILFLKEGSVCE 236
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 1e-53
Identities = 73/209 (34%), Positives = 131/209 (62%), Gaps = 15/209 (7%)
Query: 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL 136
P+L+G+++E+ KG + ++G SG GKST+++ L R ++P +G+VFLDG++I L+V L
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 137 RRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD---SSF------ 187
R ++G++ Q P LF+ ++ +NI YG + ++ E+ + A++ S
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYG--DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163
Query: 188 -LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
+ G ++S GQ QR+A+AR L +P +LLLDE TSALD S + +++ L K ++ G
Sbjct: 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GR 1221
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T ++++H + IQ AD++ ++ NG++ E
Sbjct: 1222 TCIVIAHRLSTIQN-ADLIVVIQNGKVKE 1249
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 3e-53
Identities = 77/209 (36%), Positives = 122/209 (58%), Gaps = 19/209 (9%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
ILKG+N+++ G + ++G SG GKST ++ + RL++P G V +DG+DI ++V LR
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK------- 190
+G++ Q P LF T+ +NIRYG + +T +E+ K + A+ F+ K
Sbjct: 464 EIIGVVSQEPVLFATTIAENIRYGRE----DVTMDEIEKAVKEANAY-DFIMKLPHQFDT 518
Query: 191 ----TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
G ++S GQ QR+A+AR L P++LLLDE TSALD S ++ L K ++ G
Sbjct: 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GR 576
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T ++++H + + R ADV+ G IVE
Sbjct: 577 TTIVIAHRLSTV-RNADVIAGFDGGVIVE 604
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 2e-53
Identities = 86/227 (37%), Positives = 129/227 (56%), Gaps = 15/227 (6%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSL 136
+LKG+N+ I +G ++ +IGPSGSGKST LR LN L + G + +DG ++ ++ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 137 RRKVGMLFQIPALF-EGTVVDNIRYGP-QLRGKKLTENEVY--KLLS---LADLDSSFLN 189
R +VGM+FQ LF TV++NI P ++R + E +LL L D +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD----KAH 154
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+S GQAQRVA+AR LA EP+++L DEPTSALDP + V+ +L + GMT+V
Sbjct: 155 AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMV 213
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEAKHPMALRFLQ 295
+V+H + + + D V + G I+E KP+ L +H FL
Sbjct: 214 VVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLS 260
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 169 bits (432), Expect = 6e-52
Identities = 72/213 (33%), Positives = 116/213 (54%), Gaps = 19/213 (8%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
D IL +N+ I +G ++GI+G SGSGKSTL + + R + P +G V +DG D+ D
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKT-- 191
LRR+VG++ Q L +++DNI ++ +V LA F+++
Sbjct: 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANP----GMSVEKVIYAAKLAGAHD-FISELRE 133
Query: 192 ---------GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
G +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 193
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
G T+++++H + ++ AD + ++ G+IVE
Sbjct: 194 --GRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE 223
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 2e-51
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 19/225 (8%)
Query: 51 AEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL 110
++++ +R+L D L+ + M I KG ++ GP+G GK+TLL+ +
Sbjct: 3 HHHHHGSKLE-----IRDLSVGYDKPV--LERITMTIEKGNVVNFHGPNGIGKTTLLKTI 55
Query: 111 NRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL 169
+ +P G + +G IT + + K+ L + + +V D ++ L G K+
Sbjct: 56 STYLKPLKGEIIYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV 110
Query: 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229
+NE+ L ++ L K GE+S G +RV LA TL E+ +LD+P A+D S
Sbjct: 111 NKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
+ ++++ K+ G+ I+ DV L
Sbjct: 169 KHKVLKSILEILKEKGIVIISSRE----ELSYCDVNENLHKYSTK 209
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 166 bits (424), Expect = 1e-50
Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 20/253 (7%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
+ K V +L K G +LKGV+++ G ++ IIG SGSGKST LR +N L +P G
Sbjct: 4 ENKLHVIDLHK-RYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 62
Query: 121 VFLDGRDIT-------------DLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGP-QLR 165
+ ++G++I + LR ++ M+FQ L+ TV++N+ P Q+
Sbjct: 63 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 122
Query: 166 GKKLTENEVY--KLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS 223
G + K L+ +D K +S GQ QRV++AR LA EP+VLL DEPTS
Sbjct: 123 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 182
Query: 224 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD-LL 282
ALDP + ++ +L ++ G T+V+V+H + + ++ V L G+I E P+ +
Sbjct: 183 ALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
Query: 283 SEAKHPMALRFLQ 295
+ P +FL+
Sbjct: 242 GNPQSPRLQQFLK 254
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-50
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 18/213 (8%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
DD IL+ ++ E I+ GPSG GKST+ L R ++P +G + +DG+ I ++ +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKT-- 191
+ R ++G + Q A+ GT+ +N+ YG + T+ +++++L LA SF+
Sbjct: 72 ENWRSQIGFVSQDSAIMAGTIRENLTYGLEG---DYTDEDLWQVLDLAFAR-SFVENMPD 127
Query: 192 ---------GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
G +IS GQ QR+A+AR P++L+LDE T++LD S ++ L L K
Sbjct: 128 QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK 187
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
G T ++++H + I AD + + G+I
Sbjct: 188 --GRTTLVIAHRLSTIVD-ADKIYFIEKGQITG 217
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 2e-49
Identities = 73/212 (34%), Positives = 117/212 (55%), Gaps = 17/212 (8%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
DG L+ V+ + G + ++GPSG+GKST+LR L R ++ SG + +DG+DI+ +
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN---- 189
SLR +G++ Q LF T+ DNIRYG +EV A + + +
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRV----TAGNDEVEAAAQAAGIHDAIMAFPEG 179
Query: 190 -KT-----GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
+T G ++S G+ QRVA+ART+ P ++LLDE TSALD + + I+ L K+
Sbjct: 180 YRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA- 238
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T ++V+H + + AD + ++ +G IVE
Sbjct: 239 -NRTTIVVAHRLSTVVN-ADQILVIKDGCIVE 268
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 8e-49
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 20/215 (9%)
Query: 72 ESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL 131
LK +N IP G ++G +GSGKST+ + L R ++ G + + G+++
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKY 86
Query: 132 DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKT 191
+ S+R +G++ Q LF T+ NI YG T+ EV K A L F+
Sbjct: 87 NRNSIRSIIGIVPQDTILFNETIKYNILYGKL----DATDEEVIKATKSAQLYD-FIEAL 141
Query: 192 -----------GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
G ++S G+ QR+A+AR L +P++++ DE TS+LD + + + L
Sbjct: 142 PKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+K T+++++H + I A+ + LL G+IVE
Sbjct: 202 RKNR--TLIIIAHRLSTISS-AESIILLNKGKIVE 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 1e-47
Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 10/202 (4%)
Query: 57 NQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP 116
+ + K GA ++GV+ +I +G ++G++GPSGSGK+T+LR + L P
Sbjct: 8 HHHGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP 67
Query: 117 PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENE-- 173
G V++ G+ +TDL +R VG++FQ ALF+ TV DN+ +G LR K++ ++E
Sbjct: 68 TKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMD 123
Query: 174 --VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
V +LL L+ S+ N+ E+S GQ QRVALAR LA P+VLL DEP +A+D +
Sbjct: 124 ARVRELLRFMRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR 182
Query: 232 NIEDVLVKLKKKHGMTIVMVSH 253
+ + ++ + G+T V V+H
Sbjct: 183 ELRTFVRQVHDEMGVTSVFVTH 204
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 4e-46
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 20/231 (8%)
Query: 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128
++ + + L ++ E+ G I+ ++GP+G+GKSTLL + + G++ G+ +
Sbjct: 5 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPL 63
Query: 129 TDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF 187
L L Q V + + K + + LD
Sbjct: 64 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLH---QHDKTRTELLNDVAGALALD-DK 119
Query: 188 LNKTGGEISVGQAQRVALARTLA-------NEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
L ++ ++S G+ QRV LA + ++LLLDEP ++LD ++ Q+ D ++
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD-VAQQSALDKILSA 178
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 285
+ G+ IVM SH + R A LL G+++ EVL P L++A
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA 229
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 9e-46
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 21/227 (9%)
Query: 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
+ L K S P+L +++ + G I+ IIG SG GK+TLLR L +P SG +
Sbjct: 3 AALHIGHLSK-SFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 122 FLDGRDITDLDVLSL---RRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENE---- 173
L G+ I + +L R++G L Q LF TV NI YG L K +
Sbjct: 62 SLSGKTIFSKNT-NLPVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQR 118
Query: 174 VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233
+ +L L + S + E+S GQ QR ALAR LA +PE++LLDEP SALD + I
Sbjct: 119 IEAMLELTGI-SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177
Query: 234 EDVLVKLKKKHGMTIVMVSHSIKQIQ----RIADVVCLLVNGEIVEV 276
+ ++ + +G + V VSH + + AD + ++ G I++
Sbjct: 178 REDMIAALRANGKSAVFVSHD----REEALQYADRIAVMKQGRILQT 220
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-45
Identities = 65/239 (27%), Positives = 124/239 (51%), Gaps = 9/239 (3%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
V++LRK ILKG++ EI +G I G+IGP+G+GK+T LR ++ L +P SG V +
Sbjct: 17 VVKDLRKRIGK-KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLA 181
G+++ + + +R+ + L + + ++ +R+ E V + +A
Sbjct: 76 GKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 134
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
L + S G +++ +AR L P + +LDEPTS LD ++ + + +L +
Sbjct: 135 GL-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA--KHPMALRFLQLSG 298
++ G+TI++ SH++ +++ + D + L+ NG IVE + L E + F ++
Sbjct: 194 QE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 251
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 6e-45
Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 28/238 (11%)
Query: 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
V L + + +N ++ KG I+ ++G +G GKSTLL L + P G
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 121 VFLDGRDITDLDVLSLRRKVGMLFQIP-ALFEGTVVDNIRYG--PQLRG----KKLTENE 173
+ + + +G + Q + F +V+D + G + K
Sbjct: 62 I-------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108
Query: 174 VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN- 232
+ L +L + + +S GQ Q + +AR +A+E +++LLDEPTSALD ++ Q+
Sbjct: 109 AMQALDYLNL-THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD-LANQDI 166
Query: 233 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-----EVLKPDLLSEA 285
+ +L+ L + MT+V +H Q+ IA+ LL +L + L+
Sbjct: 167 VLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTAL 224
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 9e-45
Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
+ L ++ + + L +++++ G I+GP+G+GK+ L + P SG + LD
Sbjct: 3 EIESLSRKWKNFS--LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENE-VYKLLSLAD 182
G+D+TDL + + ++Q +LF V N+ +G +R KK+ + + V
Sbjct: 61 GKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDPKRVLDTARDLK 116
Query: 183 LDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP---ISTQNIEDVLVK 239
+ L++ +S G+ QRVALAR L P++LLLDEP SALDP + + L
Sbjct: 117 I-EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR-EM--LSV 172
Query: 240 LKKKHGMTIVMVSH 253
L KK+ +T++ ++H
Sbjct: 173 LHKKNKLTVLHITH 186
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 1e-44
Identities = 66/212 (31%), Positives = 117/212 (55%), Gaps = 16/212 (7%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
P L+ +N++IP G + ++G SGSGKST+ + R ++ G + +DG D+ + +
Sbjct: 353 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 412
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS-------- 185
SLR +V ++ Q LF TV +NI Y R ++ + ++ + +A
Sbjct: 413 ASLRNQVALVSQNVHLFNDTVANNIAYA---RTEEYSREQIEEAARMAYAMDFINKMDNG 469
Query: 186 --SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
+ + + G +S GQ QR+A+AR L + +L+LDE TSALD S + I+ L +L+K
Sbjct: 470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK- 528
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T ++++H + I++ AD + ++ +G IVE
Sbjct: 529 -NRTSLVIAHRLSTIEQ-ADEIVVVEDGIIVE 558
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-44
Identities = 69/212 (32%), Positives = 114/212 (53%), Gaps = 16/212 (7%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
P L V+ IP+G + ++G SGSGKST+ R ++ SG++ LDG D+ D +
Sbjct: 353 GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL 412
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS-------- 185
+LRR ++ Q LF T+ +NI Y + + T ++ + A
Sbjct: 413 TNLRRHFALVSQNVHLFNDTIANNIAYAAEG---EYTREQIEQAARQAHAMEFIENMPQG 469
Query: 186 --SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
+ + + G +S GQ QRVA+AR L + VL+LDE TSALD S + I+ L +L+K
Sbjct: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK- 528
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
T+++++H + I++ AD + ++ GEI+E
Sbjct: 529 -NKTVLVIAHRLSTIEQ-ADEILVVDEGEIIE 558
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-44
Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI--TDLD 132
G ILK ++ +I KG + G +G+GK+TLL LN SGTV L G+
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYS 91
Query: 133 VLSLRRKVGMLFQIPAL---FEGTVVDNI---RYGPQLRGKKLTENE---VYKLLSLADL 183
++R+ +G + V+D + + + + + ++LL L +
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM 151
Query: 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
S+ + G +S G+ QRV +AR L +P+VL+LDEP + LD I+ +++ +L L
Sbjct: 152 -SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210
Query: 244 H-GMTIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 285
+ + ++ V+H I++I + LL +G+ + ++L + +S
Sbjct: 211 YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRF 259
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 5e-44
Identities = 76/215 (35%), Positives = 118/215 (54%), Gaps = 21/215 (9%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
+D+ APILK +N+ I KG + +G SG GKSTL+ + R ++ SG + +DG +I D
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 409
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDS----- 185
SLR ++G++ Q LF TV +NI G + T+ EV + +A+
Sbjct: 410 TGSLRNQIGLVQQDNILFSDTVKENILLG------RPTATDEEVVEAAKMANAHDFIMNL 463
Query: 186 -----SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
+ + + G ++S GQ QR+++AR N P +L+LDE TSALD S I++ L L
Sbjct: 464 PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 523
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
K T ++V+H + I AD + ++ NG IVE
Sbjct: 524 SK--DRTTLIVAHRLSTITH-ADKIVVIENGHIVE 555
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-43
Identities = 70/214 (32%), Positives = 115/214 (53%), Gaps = 5/214 (2%)
Query: 83 VNMEIPKGV-IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141
+N++ G ++GP+G+GKS L + + +P G V L+G DIT L RR +G
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 142 MLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQA 200
+ Q ALF +V NI YG + + + V ++ + + L++ +S G+
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-AHLLDRKPARLSGGER 132
Query: 201 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260
QRVALAR L +P +LLLDEP SA+D + + + L ++++ + I+ V+H + +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
Query: 261 IADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294
+AD V +++NG IVE K L AK+ FL
Sbjct: 193 LADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 1e-42
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 20/227 (8%)
Query: 65 RVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
+++ + K G LK VN+ I +G + I+GPSGSGKST+L + L +P G V
Sbjct: 3 KLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62
Query: 122 FLDGRDITDL--DVLSL--RRKVGMLFQ----IPALFEGTVVDNI----RYGPQLR-GKK 168
++D DL D L+ R K+G +FQ IP L T ++N+ + + +
Sbjct: 63 YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSGE 119
Query: 169 LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 228
+ L +A+L+ F N ++S GQ QRVA+AR LAN P ++L D+PT ALD
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 229 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+ + I +L KL ++ G T+V+V+H + R + + L +GE+
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHD-INVARFGERIIYLKDGEVER 225
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 5e-41
Identities = 56/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)
Query: 41 REHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSG 100
E L +A + N F L+K D +L E I+ ++G +G
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGD--FVLNVEEGEFSDSEILVMMGENG 388
Query: 101 SGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIP--ALFEGTVVDNI 158
+GK+TL++ L +P G I L+V +K+ F LF +
Sbjct: 389 TGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQF 442
Query: 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218
PQ + +V K L + D+ +++ +S G+ QRVA+ L ++ L+
Sbjct: 443 L-NPQFQ------TDVVKPLRIDDI----IDQEVQHLSGGELQRVAIVLALGIPADIYLI 491
Query: 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278
DEP++ LD V+ + + T +V H +AD V +
Sbjct: 492 DEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-- 549
Query: 279 PDLLSEAKHPMALR 292
A+ P +L
Sbjct: 550 -----HARAPESLL 558
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 6e-35
Identities = 42/230 (18%), Positives = 91/230 (39%), Gaps = 19/230 (8%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-----------FLDGRDITDL 131
G ++G++G +G GKST L+ L +P G + G ++ +
Sbjct: 96 RLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNY 155
Query: 132 DVLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTE--NEVYKLLSLADLDSSF 187
L + + + + ++ +L ++ + +V + + + L++
Sbjct: 156 FTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLEN-V 214
Query: 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
L + ++S G+ QR A+ + E +V + DEP+S LD N ++ L
Sbjct: 215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKY 273
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE--VLKPDLLSEAKHPMALRFLQ 295
++ V H + + ++D VC++ V V P + E + +
Sbjct: 274 VICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGHIP 323
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 3e-40
Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 17/221 (7%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
R ++K ILKG+++ + KG + IIG SGSGKSTLL L L P G VFL+
Sbjct: 6 RAENIKKVIRGY-EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64
Query: 125 GRDITDLDVLSL----RRKVGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTENE--V 174
G+++ + L RK+G +FQ IP L T ++N+ GK E +
Sbjct: 65 GKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL---TALENVIVPMLKMGKPKKEAKERG 121
Query: 175 YKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234
LLS L L++ E+S G+ QRVA+AR LANEP +L DEPT LD +T+ +
Sbjct: 122 EYLLSELGL-GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
D+ +K+ + G +IVMV+H +++ + + +G++V
Sbjct: 181 DIFLKINEG-GTSIVMVTHE-RELAELTHRTLEMKDGKVVG 219
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 5e-40
Identities = 65/217 (29%), Positives = 117/217 (53%), Gaps = 27/217 (12%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
++ P+L GVN + G ++ ++G +GSGKSTL+ + RL +P G V +D D+ +
Sbjct: 352 FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS------- 185
+ LR + + Q LF GT+ +N+++G + T++E+ + +A +
Sbjct: 412 LKDLRGHISAVPQETVLFSGTIKENLKWG----REDATDDEIVEAAKIAQIHDFIISLPE 467
Query: 186 ---SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
S + + G S GQ QR+++AR L +P+VL+LD+ TS++DPI+ + I D L + K
Sbjct: 468 GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK 527
Query: 243 KHGMTIVMVSHSIKQIQRI-----ADVVCLLVNGEIV 274
G T +++ Q+I AD + +L G++
Sbjct: 528 --GCTTFIIT------QKIPTALLADKILVLHEGKVA 556
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 6e-40
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 23/244 (9%)
Query: 50 EAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRA 109
E D ++ K K + ++ K+ D L N E +G I+GI+GP+G GK+T R
Sbjct: 256 EVSDLDLSKDLKTKMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARI 313
Query: 110 LNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR--YGPQLRGK 167
L G+V + + + K +F ++GTV + L
Sbjct: 314 LVGEITADEGSVTPEKQIL--------SYKPQRIFP---NYDGTVQQYLENASKDALSTS 362
Query: 168 KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227
EV K L+L L L ++S G+ Q++ +A TLA E ++ +LD+P+S LD
Sbjct: 363 SWFFEEVTKRLNLHRL----LESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418
Query: 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE---VLKPDLLSE 284
+ + ++ ++ ++ H + IAD + + GE + P L
Sbjct: 419 EERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGLATSPVTLKT 477
Query: 285 AKHP 288
+
Sbjct: 478 GMNE 481
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 55/236 (23%), Positives = 101/236 (42%), Gaps = 30/236 (12%)
Query: 80 LKGVNMEIPK-GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-----------FLDGRD 127
K + PK I+G++G +G GK+T+L+ L P G G++
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 128 ITDL------DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLA 181
I + + L + K+ + +GTV + + RGKK +EV +LL++
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILT-KIDERGKK---DEVKELLNMT 129
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
+L NK +S G QR+ +A +L E +V + D+P+S LD N+ + +L
Sbjct: 130 NL----WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE--VLKPDLLSEAKHPMALRFLQ 295
K +++V H + + + D++ ++ V V K + +L
Sbjct: 186 K--NKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLP 239
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-37
Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 21/214 (9%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
D P+LK + I G + ++GP+GSGK+T++ L R ++ G + +DG DI +
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDS------ 185
SLR +G++ Q LF TV +N++YG T+ E+ + L D
Sbjct: 425 SSLRSSIGIVLQDTILFSTTVKENLKYG------NPGATDEEIKEAAKLTHSDHFIKHLP 478
Query: 186 ----SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
+ L G ++S GQ Q +A+ R P++L+LDE TS +D + ++I+ + KL
Sbjct: 479 EGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+ G T ++++H + I+ AD++ +L +GEIVE
Sbjct: 539 E--GKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE 569
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-37
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 19/220 (8%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
++ G IL+ ++ I G +G++G +GSGKSTLL A RL G + +DG +
Sbjct: 30 TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGEIQIDGVSWDSIT 88
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG 192
+ R+ G++ Q +F GT N+ P ++ E++K+ L S G
Sbjct: 89 LEQWRKAFGVIPQKVFIFSGTFRKNL--DP---NAAHSDQEIWKVADEVGLRSVIEQFPG 143
Query: 193 G----------EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
+S G Q + LAR++ ++ ++LLLDEP++ LDP++ Q I L +
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL--KQA 201
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
T+++ I+ + D ++ ++ + L
Sbjct: 202 FADCTVILCEARIEAMLE-CDQFLVIEENKVRQYDSILEL 240
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-37
Identities = 58/212 (27%), Positives = 108/212 (50%), Gaps = 21/212 (9%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L GV++ + KG + IIGP+GSGKSTL+ + + G V+ + +DIT+ + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 140 VGML--FQIPALFEG-TVVDNIRYGPQLRGKKL---------------TENEVYKLLSLA 181
G++ FQ P + TV++N+ G G+ + +K+L
Sbjct: 83 -GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
L ++ GE+S GQ + V + R L P+++++DEP + + P +I + +++LK
Sbjct: 142 KLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
K G+T +++ H + + D + ++ NG+I
Sbjct: 201 AK-GITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 8e-36
Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 24/231 (10%)
Query: 65 RVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123
V+ + K G L VN+ I G GI+GPSG+GK+T +R + L P +G ++
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 124 DGRDITDLDVLSL---RRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE-----NEV 174
D R + L + RK+GM+FQ AL+ T +NI + E EV
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEV 124
Query: 175 YKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP---ISTQ 231
K+L + + LN E+S Q QRVALAR L +P +LLLDEP S LD S +
Sbjct: 125 AKILDIHHV----LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQ--RIADVVCLLVNGEIVEVLKPD 280
+ +++ + G+T+++VSH IAD V +LV G++V+V KP+
Sbjct: 181 -AL--VKEVQSRLGVTLLVVSHD--PADIFAIADRVGVLVKGKLVQVGKPE 226
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 9e-36
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 24/239 (10%)
Query: 40 VREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPS 99
VR + E ++ L K+ G+ L+ EI KG ++GI+GP+
Sbjct: 264 VRFRPYEIKFTKTGERVEIERETLVTYPRLVKDY--GSFRLEVEPGEIKKGEVIGIVGPN 321
Query: 100 GSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPAL---FEGTVVD 156
G GK+T ++ L + EP G + D + ++ + +EGTV +
Sbjct: 322 GIGKTTFVKMLAGVEEPTEGKIEWDLT---------------VAYKPQYIKADYEGTVYE 366
Query: 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216
+ K + +LL + ++ E+S G+ QRVA+A TL + ++
Sbjct: 367 LLSK--IDASKLNSNFYKTELLKPLGIID-LYDREVNELSGGELQRVAIAATLLRDADIY 423
Query: 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
LLDEP++ LD + + L +K+ T ++V H + I ++D + + GE +
Sbjct: 424 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEPGK 481
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-34
Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 26/232 (11%)
Query: 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP------PSGTVFLDGRDITDLDVL 134
+ +G+++GI+GP+G+GKST ++ L P S + +L
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97
Query: 135 SLRRKVGMLFQI---------PALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS 185
+ K G + + P +G V++ ++ GK EV K L L ++
Sbjct: 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK-KADETGKLE---EVVKALELENV-- 151
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
L + +S G+ QRVA+A L DEP+S LD N + +L ++ G
Sbjct: 152 --LEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-G 208
Query: 246 MTIVMVSHSIKQIQRIADVVCLL--VNGEIVEVLKPDLLSEAKHPMALRFLQ 295
++++V H + + ++D++ ++ G +P + +L+
Sbjct: 209 KSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLK 260
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 6e-35
Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 24/204 (11%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G+ L+ EI KG ++GI+GP+G GK+T ++ L + EP G V D
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--------- 418
Query: 136 LRRKVGMLFQIPAL---FEGTVVDNIR-YGPQLRGKKLTENEVYKLLSLADLDSSFLNKT 191
+ ++ + +EGTV + + + E+ K L + DL ++
Sbjct: 419 ------VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL----YDRN 468
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
++S G+ QRVA+A TL + ++ LLDEP++ LD + + L +K+ T ++V
Sbjct: 469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 252 SHSIKQIQRIADVVCLLVNGEIVE 275
H + I ++D + ++ GE
Sbjct: 529 EHDVLMIDYVSDRL-IVFEGEPGR 551
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-33
Identities = 44/212 (20%), Positives = 92/212 (43%), Gaps = 24/212 (11%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP------PSGTVFLDGRDITDLD 132
+ + G+++GI+GP+G+GK+T ++ L P S + +L
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 133 VLSLRRKVGMLFQI---------PALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADL 183
R K G + + P +G V + ++ K + +++ +L
Sbjct: 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK-------KVDEVGKFEEVVKELEL 218
Query: 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
++ L++ ++S G+ QRVA+A L + DEP+S LD + V+ +L +
Sbjct: 219 EN-VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
G +++V H + + ++DV+ ++ V
Sbjct: 278 -GKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 1e-31
Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 26/214 (12%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
+KG+++++P+G I+ +IG +G+GK+T L A+ L G + +G+DIT+
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA- 75
Query: 135 SLRRKVGM-LFQIP---ALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF-- 187
M + +P +F TV +N+ G R K DL+ F
Sbjct: 76 --HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKR--------DLEWIFSL 125
Query: 188 -------LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
L + GG +S G+ Q +A+ R L + P++L++DEP+ L PI + +V+ K+
Sbjct: 126 FPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
+ G TI++V + ++A +L G+IV
Sbjct: 186 -NQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 5e-30
Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 22/217 (10%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
L +N++I G M ++GPSGSGKSTLL + +++P SG ++ D +D+T+L
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-- 71
Query: 135 SLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFL 188
R VG++FQ AL+ TV NI + +LR E EV K+L + L L
Sbjct: 72 PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL----L 127
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP---ISTQNIEDVLVKLKKKHG 245
N+ ++S GQ QRVA+AR L EPEVLLLDEP S LD + + E L +L+K+ G
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVR-AE--LKRLQKELG 184
Query: 246 MTIVMVSHSIKQIQ--RIADVVCLLVNGEIVEVLKPD 280
+T V V+H Q + +AD + ++ GEI++V PD
Sbjct: 185 ITTVYVTHD--QAEALAMADRIAVIREGEILQVGTPD 219
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 7e-29
Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 19/198 (9%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
RV L+K + GV+ E+ G + ++GPSG GK+T L L +++P SG ++ D
Sbjct: 5 RVVNLKK-YFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE-----NEVYKLL 178
+ D+ R+VGM+FQ AL+ TV +NI + + R E E+ + L
Sbjct: 64 DVLVNDIP--PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL 121
Query: 179 SLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP---ISTQNIED 235
+ +L L++ ++S GQ QRVALAR L +P+VLL DEP S LD + + E
Sbjct: 122 LIDNL----LDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMR-AE- 175
Query: 236 VLVKLKKKHGMTIVMVSH 253
+ L+++ G+T V V+H
Sbjct: 176 -IKHLQQELGITSVYVTH 192
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 6e-28
Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 24/191 (12%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL--- 131
+ +N+ I G + ++GPSG GK+T LR + L EP G ++ RD+T L
Sbjct: 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK 81
Query: 132 DVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE-----NEVYKLLSLADLDS 185
D R + M+FQ A++ TV +NI + +++ E +LL + +L
Sbjct: 82 D-----RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-- 134
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP---ISTQNIEDVLVKLKK 242
LN+ ++S GQ QRVA+AR + EP+VLL+DEP S LD ++ + E + KL++
Sbjct: 135 --LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR-AE--IKKLQQ 189
Query: 243 KHGMTIVMVSH 253
K +T + V+H
Sbjct: 190 KLKVTTIYVTH 200
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-27
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 20/192 (10%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
++ +++E+ G M ++GPSG GK+T LR + L EP G +++ + + D +
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 135 SLR----RKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE-----NEVYKLLSLADLD 184
R + M+FQ AL+ TV DNI + +LR E EV +LL L +L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL- 132
Query: 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP---ISTQNIEDVLVKLK 241
LN+ E+S GQ QRVAL R + +P+V L+DEP S LD + + E L KL+
Sbjct: 133 ---LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR-AE--LKKLQ 186
Query: 242 KKHGMTIVMVSH 253
++ G+T + V+H
Sbjct: 187 RQLGVTTIYVTH 198
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-26
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 24/212 (11%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
+ P L G+ IP+G ++ ++G G GKS+LL AL + G V + G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS------ 67
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSL-ADLDS-SFLNK 190
V + Q + ++ +NI +G QL V + +L DL+ ++
Sbjct: 68 -------VAYVPQQAWIQNDSLRENILFGCQLEEPYY--RSVIQACALLPDLEILPSGDR 118
Query: 191 T-----GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP-ISTQNIEDVLVKLKKKH 244
T G +S GQ QRV+LAR + + ++ L D+P SA+D + E+V+
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
T ++V+HS+ DV+ ++ G+I E+
Sbjct: 179 NKTRILVTHSM-SYLPQVDVIIVMSGGKISEM 209
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-26
Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 31/245 (12%)
Query: 41 REHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSG 100
E + +A+ ++N+ S G P+LK +N +I +G ++ + G +G
Sbjct: 15 EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTG 74
Query: 101 SGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI-- 158
+GK++LL + EP G + GR + Q + GT+ +NI
Sbjct: 75 AGKTSLLMMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENIIG 121
Query: 159 ------RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212
RY ++ +L E+ + A+ D+ L + G +S GQ R++LAR + +
Sbjct: 122 VSYDEYRYRSVIKACQLEED----ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177
Query: 213 PEVLLLDEPTSALDP-ISTQNIEDVLVK-LKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270
++ LLD P LD + E + K + K T ++V+ ++ +++ AD + +L
Sbjct: 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRILVTSKMEHLKK-ADKILILHE 233
Query: 271 GEIVE 275
G
Sbjct: 234 GSSYF 238
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-26
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 28/213 (13%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
+ G P+LK +N +I +G ++ + G +G+GK++LL + EP G + GR
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ 70
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSL-ADL------DS 185
+ Q + GT+ +NI +G + V K L D+ D+
Sbjct: 71 -------ISFCSQFSWIMPGTIKENIIFGVSYDEYRY--RSVIKACQLEEDISKFAEKDN 121
Query: 186 SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP-ISTQNIEDVLVK-LKKK 243
L + G +S GQ R++LAR + + ++ LLD P LD + E + K + K
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
T ++V+ + + + AD + +L G
Sbjct: 182 ---TRILVTSKM-EHLKKADKILILHEGSSYFY 210
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 8e-26
Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 12/158 (7%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
+ K +N++I +G + +GPSG GKSTLLR + L SG +F+ + + D
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-- 71
Query: 135 SLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFL 188
R VGM+FQ AL+ +V +N+ +G +L G K N+V ++L LA L L
Sbjct: 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL----L 127
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226
++ +S GQ QRVA+ RTL EP V LLDEP S LD
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 2e-19
Identities = 43/261 (16%), Positives = 83/261 (31%), Gaps = 36/261 (13%)
Query: 7 PQFIVCGCINLLSVSQIEVIQKMPSTCSLFRDEVREHLLTVPGEAEAEDDNQIQKPKFRV 66
++I +L+ I+ + E + +
Sbjct: 367 VEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNF 426
Query: 67 RELRKESDD-----------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE 115
+ E +D +L + + + GI GP+G GKSTL+RA+
Sbjct: 427 DDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA---- 482
Query: 116 PPSGTVFLDGRDITDLDVLSLRRKVGMLFQ-IPALF-EGTVVDNIRYGPQLRGKKLTENE 173
+ + + I + +V+D + T+
Sbjct: 483 ---------NGQVDGFPTQE-ECRTVYVEHDIDGTHSDTSVLDFVF-----ESGVGTKEA 527
Query: 174 VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233
+ L + +S G ++ALAR + ++LLLDEPT+ LD ++ +
Sbjct: 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587
Query: 234 EDVLVKLKKKHGMTIVMVSHS 254
+ L T + +SH
Sbjct: 588 VNYLNTCGI----TSITISHD 604
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 2e-10
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTG-GEISVGQAQRVALARTLANEPEVLLLDE 220
+ + LT E+ + S+ LD ++ + +S GQ ++ LA P +++LDE
Sbjct: 868 ASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 927
Query: 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
PT+ LD S + L + + +++++HS + + + + V + +G +
Sbjct: 928 PTNYLDRDSLGALSKALKEFEG----GVIIITHSAEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 8e-07
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 60 QKPKFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS 118
QK +V + + + P + +N + + +IGP+G+GKSTL+ L P S
Sbjct: 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 119 GTV 121
G V
Sbjct: 728 GEV 730
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 4e-17
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 42/236 (17%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVFLDGRDITDLD 132
DG ILKGVN+ +PKG + ++GP+G+GKSTL + L + + G + LDG +I +L
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 133 VLSLRRKVGML--FQIPALFEG-TVVDNIRYGPQ-LRGKKLTENEVYKLL----SLADLD 184
R + G+ FQ P G T+ + +R Q G+++ E + + L D D
Sbjct: 74 P-DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD 132
Query: 185 SSFLNK------TGGE-----ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233
S+L++ +GGE I Q + L EP +LDE S LD + + +
Sbjct: 133 ESYLSRYLNEGFSGGEKKRNEI----LQLLVL------EPTYAVLDETDSGLDIDALKVV 182
Query: 234 EDVLVKLKKKHGMTIVMVSHSIKQIQRI-----ADVVCLLVNGEIVEVLKPDLLSE 284
+ ++ ++++H QRI D V ++++G +V P+L E
Sbjct: 183 ARGVNAMRGP-NFGALVITHY----QRILNYIQPDKVHVMMDGRVVATGGPELALE 233
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-16
Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 52/243 (21%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVFLDGRDITDLD 132
+ IL+G+++++ G + I+GP+GSGKSTL L +E GTV G+D+ L
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90
Query: 133 VLSLRRKVGML--FQ----IP----ALFEGTVVDNIRYGPQLRGKK-LTENEVYKLL--- 178
R G+ FQ IP F T ++ +R RG++ L + L+
Sbjct: 91 P-EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR---SYRGQETLDRFDFQDLMEEK 146
Query: 179 -SLADLDSSFLNKT------GGE-----ISVGQAQRVALARTLANEPEVLLLDEPTSALD 226
+L + L ++ GGE I Q L EPE+ +LDE S LD
Sbjct: 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDI----LQMAVL------EPELCILDESDSGLD 196
Query: 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-----ADVVCLLVNGEIVEVLKPDL 281
+ + + D + L+ + ++V+H QRI D V +L G IV+ L
Sbjct: 197 IDALKVVADGVNSLRDG-KRSFIIVTH----YQRILDYIKPDYVHVLYQGRIVKSGDFTL 251
Query: 282 LSE 284
+ +
Sbjct: 252 VKQ 254
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 6e-12
Identities = 62/317 (19%), Positives = 113/317 (35%), Gaps = 71/317 (22%)
Query: 20 VSQIEVIQKMPSTCSLFRDEVREHLLTVPGEAEAEDDNQIQKPKFRVR-----ELRKESD 74
+S I+ Q+ PS + E R+ L DNQ+ R +LR+
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYN---------DNQVFAKYNVSRLQPYLKLRQA-- 143
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTL----LRALNRLWEPPSGTVF-LD-GRDI 128
L + K V+ I G GSGK+ + + + +F L+
Sbjct: 144 -----LLELRPA--KNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFK-IFWLNLKNCN 193
Query: 129 TDLDVLSLRRKVGMLFQIPALF--EGTVVDNIRYGP---QLRGKKLTENEVYK--LLSLA 181
+ VL + +K +L+QI + NI+ Q ++L +++ Y+ LL L
Sbjct: 194 SPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 182 DL-DSSFLNK---------TGGEISVGQAQRVALART----LANEPEVLLLDEPTSALDP 227
++ ++ N T V ++ A T L + L DE S L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ----IQRIADVVCLLVNGEI---VEVLKPD 280
+D+ ++ + + +++ SI+ V C + I + VL+P
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 281 LLSEAKHPMALRFLQLS 297
+ F +LS
Sbjct: 370 EYRK-------MFDRLS 379
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 3e-08
Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 158 IRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE-ISVGQAQRVALARTLANEPEVL 216
+Y + + + ++ + + +FL+ GGE I++G A R+A++ LA E +L
Sbjct: 219 GKYSEVVVRAEENKVRLFVVWEGKERPLTFLS--GGERIALGLAFRLAMSLYLAGEISLL 276
Query: 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
+LDEPT LD + + ++ + KK +++VSH ++++ AD V
Sbjct: 277 ILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSH-DEELKDAADHV 323
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-07
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA------NEPEV 215
+ + ++ + L + + +S G+ + LA LA E +
Sbjct: 26 TEGKYSEVVVRAEENKVRLF-VVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISL 84
Query: 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
L+LDEPT LD + + ++ + KK +++VSH + AD V
Sbjct: 85 LILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELK-DAADHV 132
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL---------RALNRLWEPPSGTVFLDGRDI 128
L +++ P GV+ + G SGSGKSTL+ + P
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 8e-05
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 192 GGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
GGE + + ++LA + + +DE S+LD + + I VL +L ++ IV
Sbjct: 282 GGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL-ERLNKVIVF 340
Query: 251 VSH 253
++H
Sbjct: 341 ITH 343
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Length = 670 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL---------RALNRLWEPP 117
LK V+++IP G + + G SGSGKSTL+ + L+R P
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKP 384
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 192 GGE-ISVGQAQRVALARTLANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
GGE I+V + R+A+A L E ++LDEPT LD + ++ K+K ++
Sbjct: 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIP--QMI 340
Query: 250 MVSHSIKQIQRIADVV 265
+++H ++++ +ADV+
Sbjct: 341 IITH-HRELEDVADVI 355
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL---------RALNRLWEPP 117
LK +++EIP GV + + G SGSGKS+L+ L++ P
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPA 646
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Length = 972 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL---------RALNRLWEPP 117
LK V+++IP G + + G SGSGKSTL+ + L+R P
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKP 686
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 6e-04
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
+L+ ++ P ++ + G GSGKSTL L
Sbjct: 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPA 53
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.98 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.97 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.97 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.97 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.97 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.96 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.96 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.96 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.96 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.95 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.95 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.95 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.94 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.94 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.94 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.94 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.94 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.93 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.93 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.93 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.92 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.92 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.92 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.91 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.91 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.9 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.89 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.89 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.89 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.89 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.89 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.89 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.88 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.88 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.88 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.88 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.88 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.88 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.87 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.87 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.87 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.87 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.86 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.85 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.84 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.83 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.81 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.81 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.8 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.78 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.78 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.77 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.76 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.76 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.76 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.76 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.75 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.75 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.75 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.75 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.75 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.74 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.72 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.71 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.7 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.68 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.67 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.66 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.66 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.64 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.64 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.63 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.62 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.61 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.61 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.61 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.6 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.59 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.59 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.57 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.53 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.5 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.47 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.47 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.46 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.43 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.42 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.41 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.4 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.38 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.38 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.32 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.31 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.3 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.29 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.28 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.24 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.23 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 99.15 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 99.14 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 99.08 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.05 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.02 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.97 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.96 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.96 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.94 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.92 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.89 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.87 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.85 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.84 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.82 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.81 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.81 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.79 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.78 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.75 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.66 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.66 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.65 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.58 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.57 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.56 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.56 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.55 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.55 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.54 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.54 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.5 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.49 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.47 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 98.45 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.42 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.39 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.37 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.32 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.31 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.26 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.25 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.22 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.22 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.21 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.17 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.15 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 98.12 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.12 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.12 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.08 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 98.03 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 98.02 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 98.02 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 98.01 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.99 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.98 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.97 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.92 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.87 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.84 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.84 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.83 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.82 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.79 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.77 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.75 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.72 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.71 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.69 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.68 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.67 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.66 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.62 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.62 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.61 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.61 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.58 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.55 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.55 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.5 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.48 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.48 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.46 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.45 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.45 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.39 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.37 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.35 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.34 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 97.32 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.3 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.28 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.26 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.25 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.23 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.23 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 97.2 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.18 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.17 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.16 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.14 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.11 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.1 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.09 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.09 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.07 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 97.07 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.06 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 97.02 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.02 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.01 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.01 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.99 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.98 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.97 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.96 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.95 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.93 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.92 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.9 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.89 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.88 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.86 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.84 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.82 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.8 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.8 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.8 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.79 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.77 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.76 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.74 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.74 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.73 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.72 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.72 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.71 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.63 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.63 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.63 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.62 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.61 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.59 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.58 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.57 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.57 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.56 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.55 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.54 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.54 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.52 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.52 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.51 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.51 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.51 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.51 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.5 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.5 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.49 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.49 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.48 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.48 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.48 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.48 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.47 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.47 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.46 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.45 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.45 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.44 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.44 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.44 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.43 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.43 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.43 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.42 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.42 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.41 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.4 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.4 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.38 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.38 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.37 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.36 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.36 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.36 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.33 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.33 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.33 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.33 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.31 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.31 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.3 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.3 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.29 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.27 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.26 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.25 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.25 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.23 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.23 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.23 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.23 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.22 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.22 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.22 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.21 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.18 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.18 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.15 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.15 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.14 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.13 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.13 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.13 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.12 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.12 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.1 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.1 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.1 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.1 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.1 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.09 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.09 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.09 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.08 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.07 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.06 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.05 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.04 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.03 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 96.03 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.02 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.01 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.0 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.0 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 96.0 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.99 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.98 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.98 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.97 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.97 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.97 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.97 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.96 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.96 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.96 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.95 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.95 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.94 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.94 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.93 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.93 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.92 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.92 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.92 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.91 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.91 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.91 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.91 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.9 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.9 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.89 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.89 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.89 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.88 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 95.88 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.87 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.85 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.84 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.84 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.81 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.79 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.78 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.78 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.74 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.74 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.74 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.73 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.73 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.72 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.72 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.71 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.7 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.7 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.7 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.69 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.69 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.68 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.68 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.66 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.62 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.61 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.58 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.55 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.54 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.53 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.47 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.47 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.46 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.42 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.4 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.33 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.29 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.27 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 95.1 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.1 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 95.08 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.06 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.06 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.98 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.98 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.97 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 94.92 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.91 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 94.89 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.88 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.78 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.73 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.73 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.73 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 94.72 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.69 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 94.67 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.59 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.56 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 94.54 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.54 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.54 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 94.5 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.5 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.5 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.46 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.44 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-63 Score=468.16 Aligned_cols=234 Identities=37% Similarity=0.613 Sum_probs=207.7
Q ss_pred CCCeEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-
Q 022337 60 QKPKFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS- 135 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~- 135 (298)
.+++|+++||+|+|+++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++..+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45689999999999532 36999999999999999999999999999999999999999999999999998877543
Q ss_pred --HhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 136 --LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 136 --~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|++||||||++.+++. ||+||+.++....+... .++++.++++.+||. ++.++++.+|||||||||+|||||+
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHh
Confidence 46789999999999875 99999999865544332 345688999999996 5889999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPM 289 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~ 289 (298)
.+|++|||||||||||+.+++.++++|++++++.|+|||+||||++.+..+||||++|++|++++.|+++++.. +.+++
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~ 259 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 259 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 99999999999999999999999999999987779999999999999999999999999999999999998754 34556
Q ss_pred HHHHh
Q 022337 290 ALRFL 294 (298)
Q Consensus 290 ~~~~~ 294 (298)
.+.|.
T Consensus 260 ~~~~~ 264 (366)
T 3tui_C 260 AQKFI 264 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-63 Score=451.30 Aligned_cols=223 Identities=32% Similarity=0.567 Sum_probs=198.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~--~~~~~~~~ 138 (298)
+++|+++||+++|+++.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .+..++++
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 3589999999999655569999999999999999999999999999999999999999999999999842 22345678
Q ss_pred ceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 139 KVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 139 ~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+||||||++ .+|..||+||+.++....+... ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999997 4666799999999865444322 245688999999996 68899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.+++.+++.|++++++.|+|||+||||++.+..+||||++|++|++++.|+++++..
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999973349999999999999999999999999999999999988754
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-62 Score=442.85 Aligned_cols=222 Identities=28% Similarity=0.418 Sum_probs=203.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+..++++.+
T Consensus 9 ~~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 9 VALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CCEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred cceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 35899999999994 67899999999999999999999999999999999999999999999999999888877778889
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC------CC
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN------EP 213 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~------~p 213 (298)
+|+||++.+++ .||+||+.++...+.....++++.++++.+++. ++.++++.+|||||||||+|||||++ +|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p 166 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP 166 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 99999998754 699999999865433334456789999999996 57899999999999999999999999 99
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|||||||+|||+.++..+++.|++++++.|+|||+||||++.+..+||||++|++|++++.|+++++..
T Consensus 167 ~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 167 RWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 99999999999999999999999999987657899999999999999999999999999999999998754
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=457.78 Aligned_cols=221 Identities=33% Similarity=0.516 Sum_probs=199.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC--CHHHHhcc
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL--DVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~--~~~~~~~~ 139 (298)
++|+++||+|+|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .....+++
T Consensus 3 ~~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 3699999999994 67899999999999999999999999999999999999999999999999998321 12234678
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
||||||++.+|+. ||+||+.|+....+.. ..++++.++++.++|. ++.++++.+|||||||||+|||||+.+|++|
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999985 9999999987654432 2346789999999996 6899999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||||||+..+.++++.|.++.++.|+|+|+||||++++..+||||++|++|+|++.|+++++..
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999988876679999999999999999999999999999999999999864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-62 Score=436.13 Aligned_cols=220 Identities=35% Similarity=0.533 Sum_probs=191.4
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH---
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL--- 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~--- 136 (298)
+++++||+++|+++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++..++
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 58999999999633 359999999999999999999999999999999999999999999999999988775442
Q ss_pred -hcceEEEeCCCCCCcc-cHHHHhHhCcccc---CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 137 -RRKVGMLFQIPALFEG-TVVDNIRYGPQLR---GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 137 -~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++++|||||++.+++. ||+||+.++.... ... ...+++.++++.+++.+...++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 3469999999999885 9999999864322 111 12356788999999974345899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+.+|++|||||||+|||+.+++.+++.|++++++.|+|||+||||++.+ .+||||++|++|++++.++++++.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999999765589999999999965 799999999999999998877653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=459.76 Aligned_cols=228 Identities=32% Similarity=0.514 Sum_probs=205.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+|+++||+|+|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.. ++.|||
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 599999999994 67899999999999999999999999999999999999999999999999999876643 578999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
|||++.+|+. ||+||+.|+...++... .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999985 99999999876544332 246788999999996 6899999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~ 294 (298)
|||++||+..+.++++.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +.+.+...|.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~~~~ 234 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFI 234 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHHHhc
Confidence 99999999999999999999977669999999999999999999999999999999999999854 3445555554
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-61 Score=434.87 Aligned_cols=230 Identities=39% Similarity=0.588 Sum_probs=201.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT--DLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~--~~~~~~~~~~ 139 (298)
++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ......++++
T Consensus 23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4799999999994 567999999999999999999999999999999999999999999999999985 2234456778
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCc-cccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGP-QLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~-~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+|||||++.+|+. ||+||+.++. ...+... ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999998875 9999999863 2223221 245688999999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||||||+|||+.+++.+++.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++... .......|.
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFL 259 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHHHHHH
Confidence 9999999999999999999999999765 99999999999999999999999999999999999987543 334444443
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=433.16 Aligned_cols=220 Identities=37% Similarity=0.552 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC----------C
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----------L 131 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~----------~ 131 (298)
++++++||+++|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .
T Consensus 5 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4799999999994 5679999999999999999999999999999999999999999999999999851 3
Q ss_pred CH---HHHhcceEEEeCCCCCCcc-cHHHHhHhCc-cccCCC--ccHHHHHHHHHHcCCCchh-hcCCCCCCChhHHHHH
Q 022337 132 DV---LSLRRKVGMLFQIPALFEG-TVVDNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSF-LNKTGGEISVGQAQRV 203 (298)
Q Consensus 132 ~~---~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkQRv 203 (298)
+. ..+++++|||||++.+|+. ||+||+.++. ...+.. ...+++.++++.+++. ++ .++++.+|||||||||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv 162 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRV 162 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHH
Confidence 32 2456789999999998875 9999999853 322322 1245688999999997 57 8999999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |+|||+||||++.+..+|||+++|++|++++.|+++++.
T Consensus 163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999765 999999999999999999999999999999999999875
Q ss_pred c
Q 022337 284 E 284 (298)
Q Consensus 284 ~ 284 (298)
.
T Consensus 242 ~ 242 (262)
T 1b0u_A 242 G 242 (262)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-60 Score=427.65 Aligned_cols=221 Identities=28% Similarity=0.469 Sum_probs=196.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ 139 (298)
.++++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++ ++.
T Consensus 4 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 45899999999995 5679999999999999999999999999999999999999999999999999977665444 456
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcccc-CCCccHHHHHHHHHHcC-CCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLR-GKKLTENEVYKLLSLAD-LDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~-~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+|+. ||+||+.++.... ......+++.++++.++ +. +..++++.+|||||||||+|||||+.+|++|
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 161 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999998885 9999999874211 11222456788899994 85 5788999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.+++.+++.|+++++ .|+|||++|||++.+..+|||+++|++|++++.|+++++..
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999999976 48999999999999999999999999999999999888754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=450.15 Aligned_cols=233 Identities=34% Similarity=0.557 Sum_probs=205.4
Q ss_pred CCCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
..+++++++||+++|++++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r 87 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKR 87 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGS
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhC
Confidence 356789999999999335679999999999999999999999999999999999999999999999999976543 467
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++|||||++.+|+. ||+||+.|+...++... .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|++
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 89999999999985 99999999865443322 245788999999996 688999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||||||++||+..++++++.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++... .......|.
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 246 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFI 246 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHT
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhc
Confidence 9999999999999999999999999766689999999999999999999999999999999999988543 334444443
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-60 Score=441.26 Aligned_cols=222 Identities=33% Similarity=0.521 Sum_probs=197.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
...|+++||+|+|++++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++...+|++|
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 34699999999997567899999999999999999999999999999999999999999999999999998888889999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
|||||++.+|+.||+|||.++... ...+++.++++.+++.+ ...++++.+|||||||||+|||||+
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVT----AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTT----CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EEEecCCccCcccHHHHHHhhccc----CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998532 23456667777776642 1234556899999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
++|+|||||||||+||+.++..+++.|+++.+ ++|+|+||||++.+.. ||+|++|++|+|++.|+++++......+
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~~~~y 282 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSRGGVY 282 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhcChHH
Confidence 99999999999999999999999999999864 7899999999999976 9999999999999999999987643333
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-60 Score=423.92 Aligned_cols=213 Identities=37% Similarity=0.546 Sum_probs=190.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---Hh-
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS---LR- 137 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~---~~- 137 (298)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..+ ++
T Consensus 3 ~~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4799999999995 567999999999999999999999999999999999999999999999999997665432 33
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+++||+||++.+|+. ||+||+.++...++.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|+
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPI 160 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCS
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 679999999998874 9999999875433322 2245688999999996 57899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
+|||||||+|||+.+++.+++.|++++++ |+|||+||||++.+ .+||++++|++|++++.|+
T Consensus 161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 161 LLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999766 99999999999988 7999999999999998875
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-61 Score=433.50 Aligned_cols=218 Identities=27% Similarity=0.475 Sum_probs=195.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ 139 (298)
+++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..++.
T Consensus 5 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 35799999999994 56899999999999999999999999999999999999999999999999999765543 34678
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccc--cC-----------CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQL--RG-----------KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~--~~-----------~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv 203 (298)
+||+||++.+|+ .||+||+.++... .+ .. ...+++.++++.+++. ++.++++.+|||||||||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHHHH
Confidence 999999998887 4999999987532 12 11 1235688999999996 578999999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |+|||+||||++.+..+|||+++|++|++++.|++++
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999999765 9999999999999999999999999999999999888
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-60 Score=448.43 Aligned_cols=228 Identities=32% Similarity=0.516 Sum_probs=203.2
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++++||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP--KYREVGM 79 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEEE
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh--hhCcEEE
Confidence 599999999994 5679999999999999999999999999999999999999999999999999976653 3578999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
|||++.+|+. ||+||+.|+...++... .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999985 99999999865443321 235788999999996 6889999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
||||+||+..++.+++.|+++.++.|.|+|+||||++++..+||||++|++|++++.|+++++... .+.....|.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 234 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFI 234 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 999999999999999999999766689999999999999999999999999999999999998643 334444444
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-60 Score=429.16 Aligned_cols=221 Identities=29% Similarity=0.510 Sum_probs=197.5
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++++
T Consensus 12 ~~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp --CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred cCCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 356899999999994 5689999999999999999999999999999999999999999999999999865 34556788
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+++. ||+||+.++...++... ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999998875 99999998643333222 235688899999996 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.+++.+++.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999754 8999999999999999999999999999999999988753
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-60 Score=446.76 Aligned_cols=226 Identities=29% Similarity=0.536 Sum_probs=201.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ ++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++++||
T Consensus 1 ml~~~~l~~~y~-~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 1 MIEIESLSRKWK-NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp CEEEEEEEEECS-SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred CEEEEEEEEEEC-CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 589999999995 55 9999999999999999999999999999999999999999999999999976543 4678999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
|||++.+|+. ||+||+.|+...++.... +++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||||
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 9999999985 999999998654333223 7789999999997 588999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|++||+..++.+++.|+++.++.|+|+|+||||++++..+|||+++|++|++++.|+++++... .......|.
T Consensus 155 ~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~ 228 (348)
T 3d31_A 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228 (348)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHHHHhc
Confidence 9999999999999999999776699999999999999999999999999999999999988643 233444443
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-60 Score=447.82 Aligned_cols=228 Identities=36% Similarity=0.582 Sum_probs=203.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++++||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP--KDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEEE
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH--hHCcEEE
Confidence 599999999994 5679999999999999999999999999999999999999999999999999976654 3578999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
|||++.+|+. ||+||+.|+...++... .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999985 99999999865443322 245688999999997 5889999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
||||+||+..+..+++.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++... .+.....|.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~ 234 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFL 234 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHHc
Confidence 999999999999999999999766689999999999999999999999999999999999988543 334444443
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-60 Score=447.66 Aligned_cols=230 Identities=33% Similarity=0.502 Sum_probs=202.4
Q ss_pred eEEEEeEEEEeCCCCc--ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC---HHHHh
Q 022337 63 KFRVRELRKESDDGAP--ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSLR 137 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~--vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~---~~~~~ 137 (298)
+++++||+++|+ +++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+ ....+
T Consensus 3 ~l~i~~l~~~y~-~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEG-GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEEC-CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 699999999994 567 999999999999999999999999999999999999999999999999985411 12346
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+++|||||++.+|+. ||+||+.|+...++... .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|+
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~ 160 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPS 160 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 789999999999985 99999999875443322 245688999999996 68899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHH
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRF 293 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~ 293 (298)
+|||||||++||+..+.++++.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++... .......|
T Consensus 161 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~ 240 (353)
T 1oxx_K 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASL 240 (353)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHh
Confidence 99999999999999999999999999766689999999999999999999999999999999999988543 33444444
Q ss_pred h
Q 022337 294 L 294 (298)
Q Consensus 294 ~ 294 (298)
.
T Consensus 241 ~ 241 (353)
T 1oxx_K 241 I 241 (353)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-60 Score=447.41 Aligned_cols=229 Identities=28% Similarity=0.468 Sum_probs=197.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++||+++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .+++||
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 86 (372)
T 1v43_A 10 VEVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNIS 86 (372)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEE
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh--hhCcEE
Confidence 3699999999994 5679999999999999999999999999999999999999999999999999976653 357899
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||||++.+|+. ||+||+.|+...++... .++++.++++.++|. ++.++++.+|||||||||+|||||+.+|++|||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999985 99999999875544322 235688999999996 688999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||||+||+..++.+++.|+++.++.|.|+|+||||++++..+||||++|++|++++.|+++++... .+.....|.
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~a~~~ 242 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFI 242 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 9999999999999999999999766689999999999999999999999999999999999988643 334444444
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-60 Score=424.83 Aligned_cols=215 Identities=32% Similarity=0.447 Sum_probs=193.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ + +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..++++||
T Consensus 1 ml~~~~l~~~y~-~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 1 MFLKVRAEKRLG-N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CCEEEEEEEEET-T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred CEEEEEEEEEeC-C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 478999999994 3 59999999999 999999999999999999999999999999999999986533 34678999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
+||++.+|+. ||+||+.++...++....++++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||||
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999998875 99999999764332222246688999999996 578999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|+|||+.+++.+++.|++++++.|+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999975558999999999999999999999999999999999988754
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-59 Score=447.21 Aligned_cols=228 Identities=30% Similarity=0.501 Sum_probs=202.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC------CCHHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD------LDVLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~------~~~~~~ 136 (298)
+++++||+++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. .+. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 699999999994 5679999999999999999999999999999999999999999999999999854 332 3
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+++||||||++.+|+. ||+||+.|+...++... .++++.++++.++|. ++.++++.+|||||||||+|||||+.+|
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999985 99999999865443322 245688999999996 6889999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHH
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALR 292 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~ 292 (298)
++||||||||+||+..++.+++.|+++.++.|.|+|+||||++++..+|||+++|++|++++.|+++++... .+.....
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~ 238 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAG 238 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHHHHH
Confidence 999999999999999999999999999766689999999999999999999999999999999999988543 3344444
Q ss_pred Hh
Q 022337 293 FL 294 (298)
Q Consensus 293 ~~ 294 (298)
|.
T Consensus 239 ~~ 240 (372)
T 1g29_1 239 FI 240 (372)
T ss_dssp HS
T ss_pred Hh
Confidence 43
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-59 Score=426.79 Aligned_cols=228 Identities=28% Similarity=0.411 Sum_probs=195.4
Q ss_pred CCeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 61 KPKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
..+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 357999999999964 267999999999999999999999999999999999999999999999999987666666778
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccccCCCcc------HHHHHHHHHHc--CCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLT------ENEVYKLLSLA--DLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||||||++.+|+.||+||+.++......... ...+.++++.+ |++ +..++++.+|||||||||+|||||+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 89999999999888999999987532211010 11234566766 664 4678889999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
.+|++|||||||+|||+.+++.+++.|+++.++.|+|||+||||++.+. .||+|++|++|++++.|+++++......+.
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 251 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVCEQGTHLQLMERGGCYR 251 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCcHHHH
Confidence 9999999999999999999999999999986555899999999999986 499999999999999999998865434343
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-59 Score=418.76 Aligned_cols=215 Identities=35% Similarity=0.572 Sum_probs=191.6
Q ss_pred eEEEEeEEEEeC-CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESD-DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~-~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.++++||+++|+ +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.||
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 489999999994 3467999999999999999999999999999999999999999999999999998777667788899
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcC-----------CCCCCChhHHHHHHHHHHHc
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK-----------TGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGqkQRv~iAral~ 210 (298)
||||++.+|+.||+||+.++.. ....+++.++++.+++. ++.++ ++.+|||||||||+|||||+
T Consensus 87 ~v~Q~~~l~~~tv~enl~~~~~----~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~ 161 (247)
T 2ff7_A 87 VVLQDNVLLNRSIIDNISLANP----GMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 161 (247)
T ss_dssp EECSSCCCTTSBHHHHHTTTCT----TCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred EEeCCCccccccHHHHHhccCC----CCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999988899999998632 12345677888888885 34443 45899999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
.+|++|||||||+|||+.+++.+++.|+++. + |+|||+||||++.+. .||++++|++|++++.|+++++...
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHTS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999984 3 899999999999886 5999999999999999999988653
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-59 Score=422.31 Aligned_cols=218 Identities=30% Similarity=0.444 Sum_probs=193.5
Q ss_pred eEEEEeEEEEeC-CC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 63 KFRVRELRKESD-DG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~-~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
+++++|++++|+ ++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .+++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 689999999995 23 4699999999999999999999999999999999999999999999999998532 5677
Q ss_pred ceEEEeCCC--CCCcccHHHHhHhCcccc-CCCccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 139 KVGMLFQIP--ALFEGTVVDNIRYGPQLR-GKKLTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 139 ~ig~v~Q~~--~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
++||+||++ .+++.||+||+.++.... ......+++.++++.+|+.. ++.++++.+|||||||||+|||||+.+|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999996 345579999999875432 11233567899999999961 47899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.+++.+++.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999765 9999999999999999999999999999999999887743
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-59 Score=428.72 Aligned_cols=222 Identities=28% Similarity=0.384 Sum_probs=194.9
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHh
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT--DLDVLSLR 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~--~~~~~~~~ 137 (298)
..++++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...++
T Consensus 18 ~~~~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp -CEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CCceEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 345799999999995 568999999999999999999999999999999999999999999999999986 55666678
Q ss_pred cceEEEeCCCCC-Cc--ccHHHHhHhCccc----cCC-C-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 138 RKVGMLFQIPAL-FE--GTVVDNIRYGPQL----RGK-K-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 138 ~~ig~v~Q~~~l-~~--~tv~eni~~~~~~----~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++||+||++.+ +. .||+||+.++... ++. . ...+++.++++.+++. ++.++++.+|||||||||+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHH
Confidence 889999999854 33 3999999987421 111 1 1235688899999996 57899999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI--VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~ti--i~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|+.+|++|||||||+|||+.+++.+++.|++++++ |+|| |+||||++.+..+||++++|++|++++.|+++++..
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999766 8999 999999999999999999999999999999888754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-59 Score=417.02 Aligned_cols=215 Identities=32% Similarity=0.561 Sum_probs=190.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++++||
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 58999999999545679999999999999999999999999999999999999999999999999976554556788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhc-----------CCCCCCChhHHHHHHHHHHHcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN-----------KTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGqkQRv~iAral~~ 211 (298)
+||++.+|+.||+||+.++... ...++++.++++.+++. ++.+ +++.+|||||||||+|||||++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~---~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEG---DYTDEDLWQVLDLAFAR-SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTS---CSCHHHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EcCCCccccccHHHHHhhhccC---CCCHHHHHHHHHHhChH-HHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 9999999888999999986321 12356678889998886 3443 3467999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|++|||||||+|||+.+++.+++.|+++. + |+|||++|||++.+. .|||+++|++|++++.|+++++..
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999986 4 899999999999885 599999999999999999988754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-58 Score=416.89 Aligned_cols=217 Identities=30% Similarity=0.479 Sum_probs=186.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHH-hcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDVLSL-RRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-~~~ 139 (298)
+++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... ++.
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 699999999995 56899999999999999999999999999999999999 89999999999999977665444 456
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcc-ccCC--C--ccHHHHHHHHHHcCCCchhhcCCCCC-CChhHHHHHHHHHHHcCC
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQ-LRGK--K--LTENEVYKLLSLADLDSSFLNKTGGE-ISVGQAQRVALARTLANE 212 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~-~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGqkQRv~iAral~~~ 212 (298)
++|+||++.+|+. ||+||+.++.. ..+. . ...+++.++++.++++.++.++++.+ |||||||||+|||||+.+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 9999999998875 99999987642 1111 1 12356788999999953578899999 999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEEEeeChhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~~~g~~~~ 281 (298)
|++|||||||+|||+.+++.+++.|+++++ .|+|||+||||++.+..+ ||++++|++|++++.|+++.
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999865 489999999999999888 59999999999999999873
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=412.64 Aligned_cols=222 Identities=29% Similarity=0.459 Sum_probs=192.5
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
++++++||+++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+...++++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 479999999999643 4699999999999999999999999999999999999987 8999999999977666677889
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
|||+||++.+|+.||+||+.++.. ...++++.++++.+++.+. ..++++.+|||||||||+|||||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~----~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL 170 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL----DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL 170 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT----TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCC----CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 999999999998899999998642 1234567778888877421 12456889999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
+.+|++|||||||+|||+.+++.+++.|+++. + |+|||+||||++.+. .||++++|++|++++.|+++++......+
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 247 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKLNGEY 247 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence 99999999999999999999999999999985 3 899999999999885 59999999999999999999886543444
Q ss_pred HH
Q 022337 290 AL 291 (298)
Q Consensus 290 ~~ 291 (298)
.+
T Consensus 248 ~~ 249 (260)
T 2ghi_A 248 AE 249 (260)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=411.34 Aligned_cols=212 Identities=24% Similarity=0.343 Sum_probs=193.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++++|++++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++...+...+++++|
T Consensus 3 ~~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 3 IVMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred cEEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 37999999975 5999999999999999999999999999999999999999 99999999987777667788899
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC------
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE------ 214 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~------ 214 (298)
|+||++.+|+. ||+||+.++... .. .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~-~~--~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~ 152 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHD-KT--RTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAG 152 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSS-TT--CHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTC
T ss_pred EECCCCccCCCCcHHHHHHHhhcc-CC--cHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 99999998874 999999987421 11 256788999999996 57899999999999999999999999999
Q ss_pred -eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 -VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 -illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 153 QLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred eEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999765 8999999999999999999999999999999999888754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-56 Score=446.36 Aligned_cols=224 Identities=33% Similarity=0.518 Sum_probs=198.2
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..+++++|++++|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 3479999999999643 679999999999999999999999999999999999999999999999999988887888999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhc-----------CCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN-----------KTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGqkQRv~iAra 208 (298)
+|||||++.+|+.|++||+.++.. ...+++++.++++.++++ ++.+ +++.+||||||||++||||
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 419 FALVSQNVHLFNDTIANNIAYAAE---GEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred eEEEcCCCccccccHHHHHhccCC---CCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999998741 123456788888888875 3333 3568999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
|+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+||||++.+. .||+|++|++|++++.|+++++.+....
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 571 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQDGA 571 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 9999999999999999999999999999999853 899999999999986 6999999999999999999998764333
Q ss_pred HHH
Q 022337 289 MAL 291 (298)
Q Consensus 289 ~~~ 291 (298)
+.+
T Consensus 572 ~~~ 574 (582)
T 3b5x_A 572 YAQ 574 (582)
T ss_pred HHH
Confidence 433
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-56 Score=446.62 Aligned_cols=224 Identities=31% Similarity=0.494 Sum_probs=198.5
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..+++++|++++|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+.+..++|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 3469999999999643 679999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAra 208 (298)
+|||||++.+|+.|++||+.++.. ...+++++.++++.++++ ++. ++++.+||||||||++||||
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~---~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra 494 (582)
T 3b60_A 419 VALVSQNVHLFNDTVANNIAYART---EEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTT---SCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred CeEEccCCcCCCCCHHHHHhccCC---CCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999998741 123467788889988885 333 34568999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
|+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+||||++.+. .||||++|++|++++.|+++++.+....
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 571 (582)
T 3b60_A 495 LLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHGV 571 (582)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHcCCH
Confidence 9999999999999999999999999999999864 899999999999885 6999999999999999999998654333
Q ss_pred HHH
Q 022337 289 MAL 291 (298)
Q Consensus 289 ~~~ 291 (298)
+.+
T Consensus 572 ~~~ 574 (582)
T 3b60_A 572 YAQ 574 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-57 Score=407.24 Aligned_cols=208 Identities=26% Similarity=0.353 Sum_probs=185.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. +++++|
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 3799999999995256899999999999999999999999999999999999999999998 246799
Q ss_pred EEeCCCCCCc-ccHHHHhHhCcccc-C----CC-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLR-G----KK-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~-~----~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
|+||++.+++ .||+||+.++.... + .. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|+
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999998885 59999999874321 1 11 2245688999999996 57899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.+++.+++.|++++++.|+|||++|||++.+..+||++++|++|+ ++.|+++++..
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999999976558999999999999999999999999999 99999888753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-57 Score=413.04 Aligned_cols=222 Identities=25% Similarity=0.387 Sum_probs=190.3
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHH-
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDVLSL- 136 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~~~~- 136 (298)
..++++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+....
T Consensus 17 ~~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp ---CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred CCceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 345899999999994 56899999999999999999999999999999999999 57899999999999876665444
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCcc-c---cC---CCc--cHHHHHHHHHHcCCCchhhcCCCC-CCChhHHHHHHH
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQ-L---RG---KKL--TENEVYKLLSLADLDSSFLNKTGG-EISVGQAQRVAL 205 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~-~---~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkQRv~i 205 (298)
++.++|+||++.+|+. |+.||+.++.. . .+ ... ..+++.++++.+++...+.++++. +|||||||||+|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 3469999999998875 99999986431 1 11 111 134678899999996346788887 599999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEEEeeChhhhh
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||||+.+|++|||||||+|||+.+++.+++.|++++++ |+|||++|||++.+..+ |||+++|++|++++.|+++++.
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999999998654 89999999999999876 9999999999999999988763
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-56 Score=446.57 Aligned_cols=225 Identities=30% Similarity=0.509 Sum_probs=197.5
Q ss_pred CCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
...++++|++|+|++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 346999999999963 3579999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+|||||++.+|+.|++||+.++.. ...++++.++++..++.+ ...++++.+||||||||++|||||
T Consensus 419 i~~v~Q~~~lf~~tv~eni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal 494 (587)
T 3qf4_A 419 ISAVPQETVLFSGTIKENLKWGRE----DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL 494 (587)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTCS----SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHH
T ss_pred eEEECCCCcCcCccHHHHHhccCC----CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999998742 223456666666666532 234677889999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+||||++.+. .||||++|++|++++.|+++++.+....+
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~~~~~ 571 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEHCKPY 571 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST--TCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHHCHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC--CCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence 999999999999999999999999999999843 899999999999985 79999999999999999999987643334
Q ss_pred HHH
Q 022337 290 ALR 292 (298)
Q Consensus 290 ~~~ 292 (298)
.+.
T Consensus 572 ~~~ 574 (587)
T 3qf4_A 572 REI 574 (587)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-56 Score=445.41 Aligned_cols=225 Identities=35% Similarity=0.536 Sum_probs=198.6
Q ss_pred CCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
...++++|++|+|++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+.+..++|++
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 346999999999964 3579999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAra 208 (298)
+|||||++.+|+.||+||+.++.. ...++++.++++.+++. ++. ++++.+||||||||++||||
T Consensus 417 i~~v~Q~~~l~~~tv~eni~~~~~----~~~~~~~~~~~~~~~~~-~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra 491 (578)
T 4a82_A 417 IGLVQQDNILFSDTVKENILLGRP----TATDEEVVEAAKMANAH-DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491 (578)
T ss_dssp EEEECSSCCCCSSBHHHHHGGGCS----SCCHHHHHHHHHHTTCH-HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred eEEEeCCCccCcccHHHHHhcCCC----CCCHHHHHHHHHHhCcH-HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999998742 23456777888888774 233 34457999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
|+++|++||||||||+||+.+++.+.+.++++.+ ++|+|+||||++.+. .||||++|++|++++.|+++++......
T Consensus 492 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~el~~~~~~ 568 (578)
T 4a82_A 492 FLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAKQGA 568 (578)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHTTSH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 9999999999999999999999999999998853 789999999999986 5999999999999999999998765444
Q ss_pred HHHHH
Q 022337 289 MALRF 293 (298)
Q Consensus 289 ~~~~~ 293 (298)
+.+.+
T Consensus 569 ~~~~~ 573 (578)
T 4a82_A 569 YEHLY 573 (578)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-56 Score=449.11 Aligned_cols=222 Identities=31% Similarity=0.549 Sum_probs=197.1
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++|+|++++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+.+..++|+++|
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 45999999999975668999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCC-----------CCCChhHHHHHHHHHHHc
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG-----------GEISVGQAQRVALARTLA 210 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~~LSgGqkQRv~iAral~ 210 (298)
||||++.+|+.||+||+.++.. ..+++++.++++.++++ ++.++.| .+||||||||++|||||+
T Consensus 433 ~v~Q~~~lf~~tv~eni~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 433 IVLQDTILFSTTVKENLKYGNP----GATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp EECTTCCCCSSBHHHHHHSSST----TCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEeCCCccccccHHHHHhcCCC----CCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998742 12345577777777774 3444443 799999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+||||++.+.. ||+|++|++|++++.|+++++.+....+.
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 584 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQKRGFYY 584 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHTTCHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhCCCHHH
Confidence 99999999999999999999999999999853 8999999999999865 99999999999999999999876544343
Q ss_pred H
Q 022337 291 L 291 (298)
Q Consensus 291 ~ 291 (298)
+
T Consensus 585 ~ 585 (598)
T 3qf4_B 585 E 585 (598)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=428.45 Aligned_cols=225 Identities=26% Similarity=0.428 Sum_probs=200.3
Q ss_pred CCeEEEEeEEEEeC-CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESD-DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~-~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
...|+++||+|+|+ ++..+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++...+...+++.
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 34699999999995 34679999999999999999999999999999999999998 99999999999988888778889
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCC-----------CChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE-----------ISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkQRv~iAra 208 (298)
+|||||++.+|+.||+||+.+.. ...++++.++++.+++. ++.++++.+ |||||||||+||||
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~-----~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNA-----AHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTC-----CSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCcccCccCHHHHhhhcc-----ccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 99999999999999999997532 12456788999999996 688999988 99999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~ 287 (298)
|+.+|++||||||||+||+..+..+++.|+++. .++|+|+||||++.+ ..||||++|++|+|++.|+++++.. +.+
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~p~~ 246 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYPAD 246 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHCCSB
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCCc
Confidence 999999999999999999999999999999864 379999999998765 5699999999999999999999865 345
Q ss_pred hHHHHHhh
Q 022337 288 PMALRFLQ 295 (298)
Q Consensus 288 ~~~~~~~~ 295 (298)
.+...|.+
T Consensus 247 ~~va~f~g 254 (390)
T 3gd7_A 247 RFVAGFIG 254 (390)
T ss_dssp HHHHHHSS
T ss_pred hHHHhhcC
Confidence 55555543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-56 Score=403.78 Aligned_cols=210 Identities=24% Similarity=0.365 Sum_probs=188.0
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
|++++|++++|+++ +++|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. +++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~ 75 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIR 75 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhh
Confidence 58999999999531 679999999999 9999999999999999999999999 9999999999998643 23 678
Q ss_pred eE-EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 140 VG-MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 140 ig-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+| |+||++.+ ..|++||+.++...+ ....+++.++++.+++..++.++++.+|||||||||+|||||+.+|++|||
T Consensus 76 i~~~v~Q~~~l-~~tv~enl~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 76 YSTNLPEAYEI-GVTVNDIVYLYEELK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp EEECCGGGSCT-TSBHHHHHHHHHHHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred eEEEeCCCCcc-CCcHHHHHHHhhhhc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99 99999988 779999999864332 234567899999999962478999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC-EEEEEeCCEEEEeeChhhhhc
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD-VVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d-~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||++||+.+++.+++.|+++. . |||++|||++.+..+|| ++++|++|++++.|+++++.+
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred ECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999874 2 99999999999999999 999999999999999988753
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-55 Score=390.16 Aligned_cols=203 Identities=25% Similarity=0.432 Sum_probs=173.9
Q ss_pred CeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.+++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 47999999999953 46799999999999999999999999999999999999999999999998 39
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|+||++.+|+.||+||+.++... ...+..+.++.+++.+. ..++++.+|||||||||+|||||+
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSY-----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 146 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCC-----CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCCHHHHhhccCCc-----ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence 999999999888999999987421 12234445555555311 123346899999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l-~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|++|||||||+|||+.+++.+++.+ .++. + |+|||++|||++.+. .||++++|++|++++.|+++++...
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHTC
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-C-CCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999974 5553 3 789999999999886 5999999999999999999988653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=395.29 Aligned_cols=202 Identities=27% Similarity=0.428 Sum_probs=178.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..+|+++|++++|+ + ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .+++.+
T Consensus 8 ~~~l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp -CEEEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred CceEEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 34799999999995 5 8999999999999999999999999999999999999999999999999875 256789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|+||++.+|+. ||+||+.++...++.....+++.++++.++++ +. ++++.+|||||||||+|||||+.+|++||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999998875 99999998643322112356788999999997 46 8999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
|||+|||+.+++.+++.|+++.++ |+|||++|||++.+..+||+++++ +|+|
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999999999765 899999999999999999998754 5665
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-55 Score=392.30 Aligned_cols=208 Identities=27% Similarity=0.413 Sum_probs=174.9
Q ss_pred eEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
+++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 5999999999953 46799999999999999999999999999999999999999999999998 399
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCC------c----hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD------S----SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~------~----~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|+||++.++..||+||+.++.... . +...++++.+++. + ...++++.+|||||||||+|||||+.
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~--~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 144 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLE--E---PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 144 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCC--T---THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCcCCCcCHHHHhhCccccC--H---HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999877779999999875321 1 1222333333321 1 12467899999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHH---HHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLV---KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~---~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
+|++|||||||+|||+.+++.+++.|. ++. .|+|||++|||++.+. +||++++|++|++++.|+++++......
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 221 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLARDGA 221 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHHHTSH
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhhccHH
Confidence 999999999999999999999999995 343 3899999999999875 7999999999999999999988654444
Q ss_pred HHH
Q 022337 289 MAL 291 (298)
Q Consensus 289 ~~~ 291 (298)
+..
T Consensus 222 ~~~ 224 (237)
T 2cbz_A 222 FAE 224 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-55 Score=471.40 Aligned_cols=224 Identities=31% Similarity=0.544 Sum_probs=199.3
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..|+++||+|+|+++ .+||+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 359999999999643 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
|++|||+|.+|++|++|||.|+... ...+++++.++++.+++++. .....+.+||||||||++|||||
T Consensus 1155 i~~V~Qdp~LF~gTIreNI~~gld~--~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDCSIAENIIYGLDP--SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHSSSSCT--TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred eEEECCCCEeeCccHHHHHhccCCC--CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 9999999999999999999998532 23467889999999988531 12345678999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
+++|+|||||||||+||+.+.+.+.+.|+++.+ |+|+|+|+|+++.+.. ||||+||++|+|+|.|+++++.+....+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~--~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~~g~y 1309 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRARE--GRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSEKGAY 1309 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS--SSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHCC---
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC--CCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence 999999999999999999999999999998754 8999999999999965 9999999999999999999998754334
Q ss_pred H
Q 022337 290 A 290 (298)
Q Consensus 290 ~ 290 (298)
.
T Consensus 1310 ~ 1310 (1321)
T 4f4c_A 1310 Y 1310 (1321)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-53 Score=458.71 Aligned_cols=219 Identities=33% Similarity=0.547 Sum_probs=199.4
Q ss_pred CeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..|+++|++|+|++ ++++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+++++...+|++
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 35999999999964 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
||||+|+|.+|+.|++|||.||.. ..+++++.++++.++++++ .....+..||||||||++||||+
T Consensus 494 i~~v~Q~~~Lf~~TI~eNI~~g~~----~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 494 VAVVSQEPALFNCTIEENISLGKE----GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT----TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH
T ss_pred ccccCCcceeeCCchhHHHhhhcc----cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999842 3457889999998887532 23456789999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCC
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH 287 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~ 287 (298)
+++|+|||||||||+||+.+++.+.+.|.++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++++.+...
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~~~g 644 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMAQQG 644 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHTTTC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHHhhh
Confidence 999999999999999999999999999999865 899999999999885 599999999999999999999876433
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-51 Score=441.77 Aligned_cols=218 Identities=35% Similarity=0.589 Sum_probs=194.1
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++|++|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..++...+|++
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 459999999999643 369999999999999999999999999999999999999999999999999999999899999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral 209 (298)
||||||+|.+|+.||+|||.++.. ...++++.++++..++.+ ...++.+.+|||||||||+|||||
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGRE----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCS----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred eEEEcCCCccCCccHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 999999999999999999999743 234566777777666532 123456779999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 286 (298)
+++|+|||||||||+||+.+++.+.+.++++.+ |+|+|+||||++.+.. ||+|++|++|+|++.|+++++....
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHTT
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999988753 8999999999999965 9999999999999999999986543
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-51 Score=439.33 Aligned_cols=224 Identities=34% Similarity=0.594 Sum_probs=196.1
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+...+|++
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 469999999999643 369999999999999999999999999999999999999999999999999999998889999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAra 208 (298)
+|||||++.+|+.||+||+.++.... ..+++++.++++..++. ++. .+.+.+|||||||||+||||
T Consensus 1109 i~~v~Q~~~l~~~ti~eNi~~~~~~~--~~~~~~i~~~~~~~~~~-~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1109 LGIVSQEPILFDCSIAENIAYGDNSR--VVSYEEIVRAAKEANIH-QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp CEEEESSCCCCSSBHHHHHTCCCSSC--CCCHHHHHHHHHHHTCH-HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCccccccHHHHHhccCCCC--CCCHHHHHHHHHHhCcH-HHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999875321 22456677777777764 222 23457899999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
|+++|+||||||||++||+.+++.+.+.|+++. .|+|+|+||||++.+. .||||++|++|+|++.|+++++.+....
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g~~~~l~~~~g~ 1262 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHGTHQQLLAQKGI 1262 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEECHHHHHHSCSH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCCCH
Confidence 999999999999999999999999999998864 3899999999999985 4999999999999999999998765444
Q ss_pred HHH
Q 022337 289 MAL 291 (298)
Q Consensus 289 ~~~ 291 (298)
+.+
T Consensus 1263 y~~ 1265 (1284)
T 3g5u_A 1263 YFS 1265 (1284)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=379.10 Aligned_cols=198 Identities=24% Similarity=0.405 Sum_probs=158.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.+ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++
T Consensus 38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 4579999999853 4799999999999999999999999999999999999999999999987 48
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHHHH
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAral 209 (298)
+|+||++.+|+.||+||+. +... ...+..++++.+++.+ .. ++++.+|||||||||+|||||
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~-----~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL 174 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSY-----DEYRYRSVIKACQLEE-DISKFAEKDNIVLGEGGITLSGGQRARISLARAV 174 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCC-----CHHHHHHHHHHTTCHH-HHHTSTTGGGCBC----CCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCccCcccHHHHhh-Cccc-----chHHHHHHHHHhChHH-HHHhccccccchhcCccCcCCHHHHHHHHHHHHH
Confidence 9999999998889999998 5321 1233445566666632 22 234579999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l-~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+.+|++|||||||+|||+.++..+++.+ .++. + |+|||++|||++.+. .||++++|++|++++.|+++++..
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~-~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-C-CCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999999999974 4553 3 899999999999885 699999999999999999988754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-47 Score=378.81 Aligned_cols=206 Identities=27% Similarity=0.323 Sum_probs=180.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.|+ + ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ +.++
T Consensus 355 ~~~l~~~~l~~~~~-~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG-S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp CEEEEECCEEEECS-S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred ceEEEEeceEEEec-c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 45899999999994 3 4799999999999999999999999999999999999999999975 2469
Q ss_pred EEEeCCCCCC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||+||++.++ +.||.|++...... . ....+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~-~-~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSS-K-LNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHH-H-HHCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEEecCccCCCCCcHHHHHHhhhcc-C-CCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 9999998765 46999998753110 0 01245678899999996 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~g~~~~~~~ 284 (298)
|||+|||+.++..++++|++++++.|.|||+||||++++..+|||+++|++ |++...|+++++..
T Consensus 497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999765689999999999999999999999986 88888899887654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-47 Score=375.05 Aligned_cols=207 Identities=27% Similarity=0.327 Sum_probs=180.3
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++|+++.|+ + ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ ..+
T Consensus 284 ~~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~ 348 (538)
T 1yqt_A 284 RETLVTYPRLVKDYG-S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLT 348 (538)
T ss_dssp CCEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCC
T ss_pred CCeEEEEeeEEEEEC-C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------Cce
Confidence 346899999999994 3 4799999999999999999999999999999999999999999975 136
Q ss_pred eEEEeCCCCCC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 140 VGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 140 ig~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+||+||++..+ ..||.|++...... .. ...+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 349 i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~-~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlL 425 (538)
T 1yqt_A 349 VAYKPQYIKADYEGTVYELLSKIDAS-KL-NSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLL 425 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHHH-HH-TCHHHHHHTTTTTTCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEEEecCCcCCCCCcHHHHHHhhhcc-CC-CHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999998764 45999988753110 00 1245678899999996 678999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEeeChhhhhc
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLSE 284 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~g~~~~~~~ 284 (298)
||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++ |+++..|+++++..
T Consensus 426 DEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 426 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999998755589999999999999999999999996 78888899877653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=371.22 Aligned_cols=206 Identities=22% Similarity=0.269 Sum_probs=177.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.+.++++|+++.|+ + ..|++.||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +.+
T Consensus 267 ~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG-D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp CEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred cceEEEcceEEEEC-C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 45799999999994 3 578889999999999999999999999999999999999999998654 358
Q ss_pred EEEeCCCCCC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|+||+.... ..||.+|+.+..... .......+.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD 410 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDA-LSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLD 410 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSST-TCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred EeechhcccccCCCHHHHHHHhhhhc-cchhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999987654 469999998742211 112234577889999996 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEeeChhhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLL 282 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~g~~~~~ 282 (298)
|||+|||+.++..++++|++++++.|+|||+||||++++..+||||++|++ |.+...+++.++
T Consensus 411 EPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 411 QPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 999999999999999999999876799999999999999999999999986 555555665443
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=364.69 Aligned_cols=203 Identities=22% Similarity=0.278 Sum_probs=175.2
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 67 RELRKESDDGAPILKGVNMEIPKG-----VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~G-----e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
+++++.|++...+++++||++.+| |++||+||||||||||+|+|+|+++|++|+. +. +..++
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVS 416 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEE
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEE
Confidence 567788864456899999999999 8899999999999999999999999999962 21 24699
Q ss_pred EEeCCCCC-CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 142 MLFQIPAL-FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 142 ~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
|+||+... ++.||.+++..... ......+.+.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 417 ~~~q~~~~~~~~tv~e~~~~~~~--~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE 493 (608)
T 3j16_B 417 MKPQKIAPKFPGTVRQLFFKKIR--GQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE 493 (608)
T ss_dssp EECSSCCCCCCSBHHHHHHHHCS--STTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred EecccccccCCccHHHHHHHHhh--cccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999764 45699999865322 1122345677899999997 58899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEeeChhhhhcc
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLSEA 285 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~g~~~~~~~~ 285 (298)
||+|||+.++..++++|+++.++.|+|||+||||++++..+||||++|++ |+++..|+|+++...
T Consensus 494 PT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 494 PSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999999998755699999999999999999999999996 899999999887653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=366.87 Aligned_cols=199 Identities=21% Similarity=0.334 Sum_probs=167.1
Q ss_pred eEEE--------EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE---------EECC
Q 022337 63 KFRV--------RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV---------FLDG 125 (298)
Q Consensus 63 ~l~~--------~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I---------~i~g 125 (298)
+|++ +|++++|++...+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5888 889999953325999999 999999999999999999999999999999999996 3456
Q ss_pred EeCCCCCHH--HHhcceEEEeCCCCC----CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH
Q 022337 126 RDITDLDVL--SLRRKVGMLFQIPAL----FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ 199 (298)
Q Consensus 126 ~~i~~~~~~--~~~~~ig~v~Q~~~l----~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 199 (298)
.++...... ..+..+++++|+... +..|+.||+.... ..+++.++++.+|+. ++.++++.+|||||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~-------~~~~~~~~L~~lgL~-~~~~~~~~~LSGGe 233 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD-------EVGKFEEVVKELELE-NVLDRELHQLSGGE 233 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC-------CSSCHHHHHHHTTCT-TGGGSBGGGCCHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH-------HHHHHHHHHHHcCCC-chhCCChhhCCHHH
Confidence 544221111 113468899997532 3349999997421 123477899999997 57899999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 200 kQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
||||+|||||+.+|++|||||||++||+.++..++++|+++.++ |+|||+||||++.+..+||||++|+++
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999999999999764 999999999999999999999999865
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=362.71 Aligned_cols=198 Identities=21% Similarity=0.338 Sum_probs=162.9
Q ss_pred EEE-EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE---------EECCEeCCCCCH
Q 022337 64 FRV-RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV---------FLDGRDITDLDV 133 (298)
Q Consensus 64 l~~-~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I---------~i~g~~i~~~~~ 133 (298)
.++ +||+|+|++...+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 589999953325899999 999999999999999999999999999999999995 345554321100
Q ss_pred HH--HhcceEEEeCCCCCCc----ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LS--LRRKVGMLFQIPALFE----GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~--~~~~ig~v~Q~~~l~~----~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.. .+..+++++|+..+++ .|+.+++.... ..+++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-------~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAr 171 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-------ETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAA 171 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-------SSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-------HHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHH
Confidence 11 1245899999764432 48999886421 123477899999997 5789999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
||+.+|++|||||||++||+.+++.++++|+++.++ |+|||+||||++++..+||||++|++|
T Consensus 172 aL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 172 ALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999764 999999999999999999999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=371.38 Aligned_cols=204 Identities=24% Similarity=0.370 Sum_probs=163.0
Q ss_pred CCCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 60 QKPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
..++++++|++++|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|. .
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~ 736 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------C 736 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------C
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------c
Confidence 35689999999999642 57999999999999999999999999999999999999999999999862 1
Q ss_pred ceEEEeCCCCC-----CcccHHHHhHh-----------------------------------------------------
Q 022337 139 KVGMLFQIPAL-----FEGTVVDNIRY----------------------------------------------------- 160 (298)
Q Consensus 139 ~ig~v~Q~~~l-----~~~tv~eni~~----------------------------------------------------- 160 (298)
++||++|++.. ...|+.+++.+
T Consensus 737 ~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~ 816 (986)
T 2iw3_A 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYE 816 (986)
T ss_dssp CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEE
T ss_pred ceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccch
Confidence 25555554310 11233333321
Q ss_pred -------------Cccc-----------------------------------cC--CCccHHHHHHHHHHcCCCchh-hc
Q 022337 161 -------------GPQL-----------------------------------RG--KKLTENEVYKLLSLADLDSSF-LN 189 (298)
Q Consensus 161 -------------~~~~-----------------------------------~~--~~~~~~~~~~~l~~~~l~~~~-~~ 189 (298)
+... .+ .....+++.++++.+|+...+ .+
T Consensus 817 ~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~ 896 (986)
T 2iw3_A 817 YECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSH 896 (986)
T ss_dssp EEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred hhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcC
Confidence 1000 00 011245688899999997444 58
Q ss_pred CCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
+++.+|||||||||+|||||+.+|++|||||||+|||+.+...+.+.|+++ +.|||+||||++++..+||++++|+
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~e~v~~l~DrVivL~ 972 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSAEFTKNLTEEVWAVK 972 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCHHHHTTTCCEEECCB
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 899999999999999999999999999999999999999999999988764 5699999999999999999999999
Q ss_pred CCEEEEeeC
Q 022337 270 NGEIVEVLK 278 (298)
Q Consensus 270 ~G~i~~~g~ 278 (298)
+|+++..|+
T Consensus 973 ~G~Iv~~G~ 981 (986)
T 2iw3_A 973 DGRMTPSGH 981 (986)
T ss_dssp TTBCCC---
T ss_pred CCEEEEeCC
Confidence 999987664
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=359.72 Aligned_cols=206 Identities=26% Similarity=0.394 Sum_probs=145.2
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHhcCCCCC-------ccEEEECCEe
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLL---------------------RALNRLWEPP-------SGTVFLDGRD 127 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLl---------------------k~l~gl~~p~-------~G~I~i~g~~ 127 (298)
+.++|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 9999999998 5566666655
Q ss_pred CCCCCHHHHhcceEEEeCCCCC-------------------Cc-ccHHHHhHhCccccCCC--c--cH------HHHHHH
Q 022337 128 ITDLDVLSLRRKVGMLFQIPAL-------------------FE-GTVVDNIRYGPQLRGKK--L--TE------NEVYKL 177 (298)
Q Consensus 128 i~~~~~~~~~~~ig~v~Q~~~l-------------------~~-~tv~eni~~~~~~~~~~--~--~~------~~~~~~ 177 (298)
.... .++.+|+++|.+.+ ++ .||+||+.+........ . .. .+..++
T Consensus 110 ~~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 110 TSRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF 185 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred hhcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence 4321 13445555554332 23 48999998742211000 0 00 112245
Q ss_pred HHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC--eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 178 LSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 178 l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~--illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
++.+|+.+...++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++ |.|||+||||+
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~ 264 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDE 264 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 8889996434689999999999999999999999998 99999999999999999999999999764 99999999999
Q ss_pred HHHHhhcCEEEEE------eCCEEEEeeChhhhhccCC
Q 022337 256 KQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKH 287 (298)
Q Consensus 256 ~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~~~ 287 (298)
+.+. .||+|++| ++|++++.|+++++.....
T Consensus 265 ~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 265 DTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHh-hCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 9875 69999999 8999999999998865433
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-42 Score=354.57 Aligned_cols=197 Identities=21% Similarity=0.277 Sum_probs=169.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.+...|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+... +.+++|
T Consensus 435 ~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~~ 499 (986)
T 2iw3_A 435 DLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTVY 499 (986)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEEE
T ss_pred eeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEEE
Confidence 477779999994 5689999999999999999999999999999999996 554 4543311 124789
Q ss_pred EeCCC-CCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 143 LFQIP-ALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 143 v~Q~~-~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
++|++ .+++ .|+.||+.+. ..+ . ++++.++++.+|+..++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 500 v~q~~~~~~~~ltv~e~l~~~--~~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE 574 (986)
T 2iw3_A 500 VEHDIDGTHSDTSVLDFVFES--GVG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE 574 (986)
T ss_dssp TTCCCCCCCTTSBHHHHHHTT--CSS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES
T ss_pred EcccccccccCCcHHHHHHHh--hcC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99985 4555 5999999862 222 1 56789999999996457899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLLS 283 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~~ 283 (298)
||++||+.+++.+.+.|++ .|.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 575 PTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 575 PTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 9999999999999999987 2899999999999999999999999999997 578888764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=344.44 Aligned_cols=210 Identities=28% Similarity=0.347 Sum_probs=161.0
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh----------------------cCCCCCccEEEECCEeCCCCCHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN----------------------RLWEPPSGTVFLDGRDITDLDVL 134 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~----------------------gl~~p~~G~I~i~g~~i~~~~~~ 134 (298)
..+|+||||+|++||++||+||||||||||+++|+ |+..+ .|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998764 44333 46899998887543210
Q ss_pred HH-----------------------------------------hcceEEEeCCCCCC-----------------------
Q 022337 135 SL-----------------------------------------RRKVGMLFQIPALF----------------------- 150 (298)
Q Consensus 135 ~~-----------------------------------------~~~ig~v~Q~~~l~----------------------- 150 (298)
.. ....|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 00 00124444433222
Q ss_pred ----------cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC---CeEE
Q 022337 151 ----------EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP---EVLL 217 (298)
Q Consensus 151 ----------~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p---~ill 217 (298)
..|+.||+.+... ....++..+.++.+++.....++++.+|||||||||+|||||+.+| ++||
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~lll 569 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS----IPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI 569 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT----CHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH----hhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 2488899887542 1223456778888999644568899999999999999999999887 5999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhccCChHHH
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
|||||+|||+.++..++++|++++++ |+|||+||||++.+ .+||||++| ++|+|++.|+++++.+....+..
T Consensus 570 lDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~~~ 647 (670)
T 3ux8_A 570 LDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG 647 (670)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTCHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCccHHH
Confidence 99999999999999999999999765 99999999999987 569999999 89999999999998654444443
Q ss_pred HH
Q 022337 292 RF 293 (298)
Q Consensus 292 ~~ 293 (298)
.|
T Consensus 648 ~~ 649 (670)
T 3ux8_A 648 RY 649 (670)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-42 Score=342.81 Aligned_cols=198 Identities=20% Similarity=0.322 Sum_probs=155.1
Q ss_pred eEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEE-----------ECCEeCCCCCHHHH
Q 022337 68 ELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-----------LDGRDITDLDVLSL 136 (298)
Q Consensus 68 ~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~-----------i~g~~i~~~~~~~~ 136 (298)
|++++|+++...|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. +.|.++..+.....
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 45788865556788877 5999999999999999999999999999999999982 33322211111112
Q ss_pred hcce--EEEeCCCCCC------c-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 137 RRKV--GMLFQIPALF------E-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 137 ~~~i--g~v~Q~~~l~------~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.+.+ .+.+|....+ + .++.+++.... ....+++.++++.+++. +..++++.+|||||||||+|||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGe~Qrv~iAr 234 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-----EKSPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGM 234 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-----CSCHHHHHHHHHHHTCT-GGGGSCTTTCCHHHHHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-----hhHHHHHHHHHHHcCCc-chhCCChHHCCHHHHHHHHHHH
Confidence 2233 2334432211 1 14555554321 22356788999999997 5789999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
||+.+|++|||||||++||+.++..+.++|+++.++ |+|||+||||++++..+||||++|++|..
T Consensus 235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999764 89999999999999999999999998653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=338.92 Aligned_cols=194 Identities=22% Similarity=0.325 Sum_probs=153.4
Q ss_pred eEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-----------EECCEeCCCCCHHHH
Q 022337 68 ELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-----------FLDGRDITDLDVLSL 136 (298)
Q Consensus 68 ~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-----------~i~g~~i~~~~~~~~ 136 (298)
+.+.+|+.+...|.++.. +++||++||+||||||||||+|+|+|+++|++|+| .++|+++..+.....
T Consensus 4 ~~~~~~~~~~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNGFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTSCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 466788654444444443 46999999999999999999999999999999998 567766532111111
Q ss_pred h--cceEEEeCC----CCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 137 R--RKVGMLFQI----PALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 137 ~--~~ig~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
. ..+...+|. +.++..++.+++.... ..+++.++++.+++. .+.++++.+|||||||||+|||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~ 154 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKID-------ERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLL 154 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC-------CSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcch-------hHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHH
Confidence 1 123344443 3345568888765321 123467889999996 5789999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
.+|++|||||||++||+.++..+.++|+++.+ |+|||+||||++++..+||+|++|++|.
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999999999999999999953 8999999999999999999999998754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=326.15 Aligned_cols=226 Identities=25% Similarity=0.338 Sum_probs=168.9
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHH-HhcCC-------CC----------------
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRA-LNRLW-------EP---------------- 116 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~-l~gl~-------~p---------------- 116 (298)
.+.|+++|+++ .+|+|+||+|++||++||+|+||||||||++. |+|++ +|
T Consensus 500 ~~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 500 AGWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp SCEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred CceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 45799999985 26999999999999999999999999999997 77554 23
Q ss_pred --Ccc-------EEEECCEeCCCCCH----------HHHh---------cceEEEeC----------------------C
Q 022337 117 --PSG-------TVFLDGRDITDLDV----------LSLR---------RKVGMLFQ----------------------I 146 (298)
Q Consensus 117 --~~G-------~I~i~g~~i~~~~~----------~~~~---------~~ig~v~Q----------------------~ 146 (298)
.+| .|.++|.++...+. ..+| +..||.++ +
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 467 68899988754321 1111 11223222 1
Q ss_pred CCCC------------------------c-ccHHHHhHhCcc----ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCCh
Q 022337 147 PALF------------------------E-GTVVDNIRYGPQ----LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197 (298)
Q Consensus 147 ~~l~------------------------~-~tv~eni~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 197 (298)
..++ . .++.||+.+... +.......+++.++++.++|.....++++.+|||
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSG 733 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSG 733 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCH
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccCCH
Confidence 1111 1 255555543210 0111122346788999999963246889999999
Q ss_pred hHHHHHHHHHHHcCC---CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------
Q 022337 198 GQAQRVALARTLANE---PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------ 268 (298)
Q Consensus 198 GqkQRv~iAral~~~---p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------ 268 (298)
||||||+|||+|+.+ |++|||||||+|||+..++.++++|++++++ |.|||+||||++++ ..||||++|
T Consensus 734 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~i-~~aDrii~L~p~~g~ 811 (842)
T 2vf7_A 734 GEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHKMQVV-AASDWVLDIGPGAGE 811 (842)
T ss_dssp HHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEECSSSGG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHH-HhCCEEEEECCCCCC
Confidence 999999999999996 7999999999999999999999999999764 99999999999999 689999999
Q ss_pred eCCEEEEeeChhhhhccCChHHHHHh
Q 022337 269 VNGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 269 ~~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
++|+|++.|+++++......+...|+
T Consensus 812 ~~G~Iv~~g~~~el~~~~~~~t~~~l 837 (842)
T 2vf7_A 812 DGGRLVAQGTPAEVAQAAGSVTAPYL 837 (842)
T ss_dssp GCCSEEEEECHHHHTTCTTCSSHHHH
T ss_pred CCCEEEEEcCHHHHHhCchhHHHHHH
Confidence 79999999999998654333443443
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=328.13 Aligned_cols=222 Identities=27% Similarity=0.390 Sum_probs=169.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHhcCCCCC------cc------EE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLL---------RALNRLWEPP------SG------TV 121 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLl---------k~l~gl~~p~------~G------~I 121 (298)
.+++++.+ ...|+|+||+|++|++++|+||||||||||+ +++.+...+. +| .+
T Consensus 589 ~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i 662 (916)
T 3pih_A 589 SLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMI 662 (916)
T ss_dssp EEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEE
T ss_pred eEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceE
Confidence 45555543 3579999999999999999999999999997 4444443332 33 35
Q ss_pred EECCEeCCCCCH---H-------HH-------------------------------hcceEEEeCCCCCCc---------
Q 022337 122 FLDGRDITDLDV---L-------SL-------------------------------RRKVGMLFQIPALFE--------- 151 (298)
Q Consensus 122 ~i~g~~i~~~~~---~-------~~-------------------------------~~~ig~v~Q~~~l~~--------- 151 (298)
.++..++...+. . .. .+..|+++++..+++
T Consensus 663 ~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c 742 (916)
T 3pih_A 663 AIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVC 742 (916)
T ss_dssp EECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTT
T ss_pred eeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccc
Confidence 555555432110 0 00 123578888776543
Q ss_pred ------------------------ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 152 ------------------------GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 152 ------------------------~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.|+.|++.|... .....++.++++.+||.....++++.+|||||||||+|||
T Consensus 743 ~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~----~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAr 818 (916)
T 3pih_A 743 KGKRYNRETLEITYKGKNISDILDMTVDEALEFFKN----IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLAS 818 (916)
T ss_dssp TTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT----CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHH
T ss_pred cccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc----chhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHH
Confidence 256666665421 1223567789999999643467899999999999999999
Q ss_pred HHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEeeC
Q 022337 208 TLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLK 278 (298)
Q Consensus 208 al~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g~ 278 (298)
||+++| ++|||||||+|||+..++.+++.|+++.++ |.|||+||||++.+. .||+|++| ++|+|++.|+
T Consensus 819 aL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVIvI~HdL~~i~-~ADrIivLgp~gg~~~G~Iv~~Gt 896 (916)
T 3pih_A 819 ELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIVIEHNLDVIK-NADHIIDLGPEGGKEGGYIVATGT 896 (916)
T ss_dssp HHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEES
T ss_pred HHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-hCCEEEEecCCCCCCCCEEEEEcC
Confidence 999875 799999999999999999999999999764 999999999999886 49999999 8999999999
Q ss_pred hhhhhccCChHHHHHhhh
Q 022337 279 PDLLSEAKHPMALRFLQL 296 (298)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~ 296 (298)
++++....+.+...|+..
T Consensus 897 peel~~~~~syt~~~l~~ 914 (916)
T 3pih_A 897 PEEIAKNPHSYTGRFLKN 914 (916)
T ss_dssp HHHHHSCTTCHHHHHHTT
T ss_pred HHHHHhCCchHHHHHHHh
Confidence 999987666777777654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=325.44 Aligned_cols=219 Identities=28% Similarity=0.355 Sum_probs=168.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh-cCC-------CCCcc-------------E
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN-RLW-------EPPSG-------------T 120 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~-gl~-------~p~~G-------------~ 120 (298)
+.++++|++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .
T Consensus 628 ~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 628 RWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp CEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred eEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 5799999862 3699999999999999999999999999999864 221 12333 4
Q ss_pred EEECCEeCCCCC---HH-------HH---------hcceEEEeCCCCCC-------------------------------
Q 022337 121 VFLDGRDITDLD---VL-------SL---------RRKVGMLFQIPALF------------------------------- 150 (298)
Q Consensus 121 I~i~g~~i~~~~---~~-------~~---------~~~ig~v~Q~~~l~------------------------------- 150 (298)
|.++|.++...+ +. .. .+.+||++|.+.+.
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 788888874321 11 01 13468888754321
Q ss_pred ------------------------cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 151 ------------------------EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 151 ------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
..|+.|++.|.... ....+..++++.+||.....++++.+|||||||||+||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~----~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA 857 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI----PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA 857 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC----HHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc----hhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHH
Confidence 12566666654221 12234678899999964357899999999999999999
Q ss_pred HHHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEee
Q 022337 207 RTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVL 277 (298)
Q Consensus 207 ral~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g 277 (298)
|+|+.+| ++|||||||+|||+.+++.+++.|+++.++ |.|||+||||++.+ ..||||++| ++|+|++.|
T Consensus 858 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 858 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVG 935 (972)
T ss_dssp HHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEE
T ss_pred HHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEec
Confidence 9999875 999999999999999999999999999764 99999999999987 579999999 789999999
Q ss_pred ChhhhhccCChHHHH
Q 022337 278 KPDLLSEAKHPMALR 292 (298)
Q Consensus 278 ~~~~~~~~~~~~~~~ 292 (298)
+++++......+...
T Consensus 936 ~~~el~~~~~~~t~~ 950 (972)
T 2r6f_A 936 TPEEVAEVKESHTGR 950 (972)
T ss_dssp SHHHHHTCTTCHHHH
T ss_pred CHHHHHhCchhHHHH
Confidence 999986543333333
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=336.75 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=163.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-E-EEECCEeCCCCCHHHHhc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-T-VFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~-I~i~g~~i~~~~~~~~~~ 138 (298)
.+|++++||+++|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. .++
T Consensus 116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~ 179 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQ 179 (460)
T ss_dssp CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTS
T ss_pred cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccC
Confidence 56788899998883 79999999999999999999999999999999999999 9 999981 257
Q ss_pred ceEEEeCCCCC---Cc-ccHHHHhHhCccc-cCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH--HcC
Q 022337 139 KVGMLFQIPAL---FE-GTVVDNIRYGPQL-RGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART--LAN 211 (298)
Q Consensus 139 ~ig~v~Q~~~l---~~-~tv~eni~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra--l~~ 211 (298)
.++|+||++.+ ++ .|++||+ |+... .+. ...+++.++++.+|+. +..+ +.+|||||||||+|||| |+.
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~-~~~~~~~~ll~~~gl~-~~~~--~~~LSgGq~qrlalAra~rL~~ 254 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGA-TLLHNKQPMVKNFGLE-RINE--NKDLYLECISQLGQVVGQRLHL 254 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC-CSSCCBCCEECCCCSS-SGGG--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCc-chHHHHHHHHHHhCCC-cccc--hhhhhHHHHHHHHHHHHHHhcc
Confidence 79999999854 33 4899999 76542 121 1123355678888996 3454 88999999999999999 999
Q ss_pred CCCe----EEEeC-cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH------HHHhhcCE-----EEEEe-CCEEE
Q 022337 212 EPEV----LLLDE-PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK------QIQRIADV-----VCLLV-NGEIV 274 (298)
Q Consensus 212 ~p~i----llLDE-Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~------~~~~~~d~-----v~vl~-~G~i~ 274 (298)
+|++ ||||| ||++||+. .+.+.+++++ .+.|+|+||||.+ ++..+||| |++|+ +|+++
T Consensus 255 ~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 255 DPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp CHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred CcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 9999 99999 99999999 5555555544 3789999999987 88899999 99999 99999
Q ss_pred EeeChhhhhc
Q 022337 275 EVLKPDLLSE 284 (298)
Q Consensus 275 ~~g~~~~~~~ 284 (298)
.++++++..
T Consensus 330 -~g~~~~~~~ 338 (460)
T 2npi_A 330 -AVDDVYKRS 338 (460)
T ss_dssp -CCCHHHHHH
T ss_pred -ECCHHHHhh
Confidence 899887743
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=288.23 Aligned_cols=196 Identities=15% Similarity=0.197 Sum_probs=146.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC--------------------------------------CCcc
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--------------------------------------PPSG 119 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~--------------------------------------p~~G 119 (298)
.+++++||++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999977764 4578
Q ss_pred EEEECCEeCCCCCHHHHhcc-eEEEeCCCCCCcccHHHHhHhCccccC------------------------CC------
Q 022337 120 TVFLDGRDITDLDVLSLRRK-VGMLFQIPALFEGTVVDNIRYGPQLRG------------------------KK------ 168 (298)
Q Consensus 120 ~I~i~g~~i~~~~~~~~~~~-ig~v~Q~~~l~~~tv~eni~~~~~~~~------------------------~~------ 168 (298)
++++||+++...+..++.+. +++++|++.++..+..++..|.-.... ..
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999865444555554 899999987654333322222100000 00
Q ss_pred --------------------------------ccHHHHHHHHHHcCCCch----------------------hhc-----
Q 022337 169 --------------------------------LTENEVYKLLSLADLDSS----------------------FLN----- 189 (298)
Q Consensus 169 --------------------------------~~~~~~~~~l~~~~l~~~----------------------~~~----- 189 (298)
.-.+.+.+.++.++++.. ...
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 001223344555554310 001
Q ss_pred --CCCCC-CChhHHHHHHHHHHHcCCC--CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 190 --KTGGE-ISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 190 --~~~~~-LSgGqkQRv~iAral~~~p--~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
++... ||||||||++|||+|+.+| ++|||||||++||+..+..+.+.|+++. + |.|||+||||++.+ .+||+
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~-~~~d~ 364 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIA-ARAHH 364 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHH-TTCSE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHH-hhcCe
Confidence 11222 7999999999999999999 9999999999999999999999999996 3 89999999999876 57999
Q ss_pred EEEE----eCCEEEEee
Q 022337 265 VCLL----VNGEIVEVL 277 (298)
Q Consensus 265 v~vl----~~G~i~~~g 277 (298)
+++| ++|+++...
T Consensus 365 i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 365 HYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred EEEEEEeccCCceEEEE
Confidence 9999 999987653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-36 Score=264.68 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=105.9
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
++.+|+|+ ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++.. +....++++||+||++ .
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------H
Confidence 45789996 89999999999999999999999999 999999943 33321 1123467899999987 3
Q ss_pred HHh-HhCc----cccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHH
Q 022337 156 DNI-RYGP----QLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 230 (298)
Q Consensus 156 eni-~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~ 230 (298)
||+ .+.. ..... ...+++.++++. ++ ||||||+|||||+.+|++|||||||++ ++
T Consensus 77 enl~~~~~~~~~~~~~~-~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDM-VEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp ---CTTTHHHHHHHTTT-SCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHHHHHHHHHHh-ccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 444 2211 00010 112334455544 22 999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 231 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 231 ~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
..+++.|+++ + .|+||| +|||++.+. +....++|..
T Consensus 137 ~~l~~~l~~l-~-~g~tii-vtHd~~~~~----~~~~~~~G~~ 172 (208)
T 3b85_A 137 AQMKMFLTRL-G-FGSKMV-VTGDITQVD----LPGGQKSGLR 172 (208)
T ss_dssp HHHHHHHTTB-C-TTCEEE-EEEC----------------CCH
T ss_pred HHHHHHHHHh-c-CCCEEE-EECCHHHHh----CcCCCCCcHH
Confidence 9999999988 4 489999 999998664 3445567754
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-32 Score=254.14 Aligned_cols=196 Identities=19% Similarity=0.305 Sum_probs=137.2
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC----------------------------------------------
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW---------------------------------------------- 114 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~---------------------------------------------- 114 (298)
++++|++.+| +++|+||||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678999999 99999999999999999999554
Q ss_pred ----CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCccccCC--C---------ccHHHHHH--
Q 022337 115 ----EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGK--K---------LTENEVYK-- 176 (298)
Q Consensus 115 ----~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~--~---------~~~~~~~~-- 176 (298)
.+.+|.+++||+++...........+|+.+|+..++. .++.+++...+..+.. . ...+++.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3345789999988743233344556888888776653 5787777654321000 0 00011111
Q ss_pred -----------------------HHHHcCCC-----chhhcCCCCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCC
Q 022337 177 -----------------------LLSLADLD-----SSFLNKTGGEISVGQAQRVALARTLA----NEPEVLLLDEPTSA 224 (298)
Q Consensus 177 -----------------------~l~~~~l~-----~~~~~~~~~~LSgGqkQRv~iAral~----~~p~illLDEPts~ 224 (298)
.++. +++ .+..+.++.+||||||||++|||||+ .+|++|||||||++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1111 221 12245667899999999999999997 68999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEE--EEEeCCEE-EEeeChhh
Q 022337 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV--CLLVNGEI-VEVLKPDL 281 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v--~vl~~G~i-~~~g~~~~ 281 (298)
||+..++.+.+.|+++. + |.|+|++||+.+ +..+||++ ++|.+|+. +...+.++
T Consensus 254 LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 254 LDDYNAERFKRLLKENS-K-HTQFIVITHNKI-VMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CCHHHHHHHHHHHHHHT-T-TSEEEEECCCTT-GGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CCHHHHHHHHHHHHHhc-C-CCeEEEEECCHH-HHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 99999999999999984 3 789999999975 45789987 88888854 33334433
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=253.55 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=78.6
Q ss_pred cCCCCCCChhHHHHHHHHHHHc------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 189 NKTGGEISVGQAQRVALARTLA------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
++++.+|||||||||+|||||+ .+|++|||||||++||+.+++.+++.|+++.++ |.|||+||||++. ...|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL-NKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-SSEEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEecchHH-HHhC
Confidence 4678899999999999999999 799999999999999999999999999999754 9999999999998 5679
Q ss_pred CEEEEEeCCEEEE
Q 022337 263 DVVCLLVNGEIVE 275 (298)
Q Consensus 263 d~v~vl~~G~i~~ 275 (298)
|++++|++|++++
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999975
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=227.13 Aligned_cols=150 Identities=17% Similarity=0.258 Sum_probs=110.0
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCC--CcccHHHHhH
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPAL--FEGTVVDNIR 159 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l--~~~tv~eni~ 159 (298)
|+||++++||+++|+||||||||||+|++.+ |...+ +...++ |+++|++.- +..++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 21111 122222 778887642 2223444332
Q ss_pred hCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH-----------
Q 022337 160 YGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI----------- 228 (298)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~----------- 228 (298)
. ........+.. ...+ .....|+|||||++||||++.+|++|+|||||++||+.
T Consensus 64 ~-------------~~~~~~~~g~~-~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~ 128 (171)
T 4gp7_A 64 Y-------------IVSKRLQLGKL-TVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEE 128 (171)
T ss_dssp H-------------HHHHHHHTTCC-EEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCH
T ss_pred H-------------HHHHHHhCCCe-EEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCH
Confidence 1 11122234553 2333 34567999999999999999999999999999999999
Q ss_pred -----HHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEE
Q 022337 229 -----STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265 (298)
Q Consensus 229 -----~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v 265 (298)
.+..+++.|+++.++ |.|+|++|||++++.. ++++
T Consensus 129 ~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~~~-~~~~ 168 (171)
T 4gp7_A 129 YVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEVEE-VVFE 168 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHHHH-EEEE
T ss_pred HHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHhhh-hhhc
Confidence 558899999888766 9999999999999875 4443
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-35 Score=271.50 Aligned_cols=163 Identities=19% Similarity=0.244 Sum_probs=135.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~ 157 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSF 157 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECG
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEE
Confidence 588999999995 57999999999999999999999999999999999999 8988 356
Q ss_pred EeCCCCCCcccHHH-HhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFEGTVVD-NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~~tv~e-ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
++|++.+|+.|+++ |+.++.. .. +.+.+.++.+ ++. ..+ +..|||||||| ||||+++|+|||
T Consensus 158 v~q~~~lf~~ti~~~ni~~~~~-----~~-~~~~~~i~~~-L~~-gld--g~~LSgGqkQR---ARAll~~p~iLl---- 220 (305)
T 2v9p_A 158 ANHKSHFWLASLADTRAALVDD-----AT-HACWRYFDTY-LRN-ALD--GYPVSIDRKHK---AAVQIKAPPLLV---- 220 (305)
T ss_dssp GGTTSGGGGGGGTTCSCEEEEE-----EC-HHHHHHHHHT-TTG-GGG--TCCEECCCSSC---CCCEECCCCEEE----
T ss_pred ecCccccccccHHHHhhccCcc-----cc-HHHHHHHHHH-hHc-cCC--ccCcCHHHHHH---HHHHhCCCCEEE----
Confidence 78999999889987 8887532 11 2455666664 442 334 78999999999 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||+||+.+++.+.. +||+++.+ .+||+| +|++|++++.|+++++
T Consensus 221 Ts~LD~~~~~~i~~---------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 TSNIDVQAEDRYLY---------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp EESSCSTTCGGGGG---------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred ECCCCHHHHHHHHH---------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence 99999999888752 29999876 579999 9999999999999887
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-33 Score=269.70 Aligned_cols=177 Identities=12% Similarity=0.137 Sum_probs=144.0
Q ss_pred CcceeeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH
Q 022337 77 APILKGVNMEIPKGV--------------------IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge--------------------~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~ 136 (298)
+.+|+++||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999987652
Q ss_pred hcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChh--HHHHHHHHHHHcC---
Q 022337 137 RRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVG--QAQRVALARTLAN--- 211 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkQRv~iAral~~--- 211 (298)
+ .++++|++.....|+.||+.++.. ..++.++++.+++. +. +..+. ||+| |+||++|||||++
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~-------~~~~~~~L~~~~L~-~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~ 176 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST-------NFPPDTYLEKMKFY-EY-DFFII-ISATRFKKNDIDIAKAISMMKK 176 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS-------SCCHHHHHHHTTGG-GC-SEEEE-EESSCCCHHHHHHHHHHHHTTC
T ss_pred e--eEEeccccccCCeeehHhhcccch-------HHHHHHHHHHcCCC-cc-CCeEE-eCCCCccHHHHHHHHHHHhcCC
Confidence 1 288999864334588888866521 12467888999885 33 33444 9999 9999999999999
Q ss_pred -------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh----cC----CcEEEEEccCHHH--HHhhcCEEE-EEeCCE
Q 022337 212 -------EPEVLLLDEPTSALDPISTQNIEDVLVKLKK----KH----GMTIVMVSHSIKQ--IQRIADVVC-LLVNGE 272 (298)
Q Consensus 212 -------~p~illLDEPts~LD~~~~~~~~~~l~~l~~----~~----g~tii~itHd~~~--~~~~~d~v~-vl~~G~ 272 (298)
+|++++|||||+|||+..++++++.++++.+ +. ..+++++||+++. +.++||++. .|..|+
T Consensus 177 p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 177 EFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 9999999999999999999999999999852 22 3678899999987 889999985 455553
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-33 Score=246.77 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=123.1
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVV 155 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~ 155 (298)
.++++| .+|++||+++|+||||||||||+|+|+|+++. |.+++......+....++.++|+||++.+|+. ++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 79999999999999999999999999999963 44444222111111235679999999887764 888
Q ss_pred HHhHhCc------cccCCCc--cHHHHHHH------HHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 156 DNIRYGP------QLRGKKL--TENEVYKL------LSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 156 eni~~~~------~~~~~~~--~~~~~~~~------l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
+|+.... ..++... .++++.+. ++.+|+. .+.++++.+|| ||+.+|++++||||
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDep 150 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQAR 150 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHHH
Confidence 8775332 1112111 12223333 4455563 46777888888 99999999999999
Q ss_pred CCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 222 TSAL----DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 222 ts~L----D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
|+++ |+..++++.+.++++.++.|.|+|+||||++++..+||||++|.
T Consensus 151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 151 LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9998 78899999999999976568999999999999999999999984
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-31 Score=228.77 Aligned_cols=148 Identities=11% Similarity=0.164 Sum_probs=110.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccH
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE 171 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 171 (298)
.++|+||||||||||+|+|+|++. |.++|.+.........++++||++|++. +.+|+ +. .. ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~-----~~~~~-~~-~~-~~~--- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTE-----GKKKI-FS-SK-FFT--- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETT-----CCEEE-EE-ET-TCC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCc-----HHHHH-HH-hh-cCC---
Confidence 589999999999999999999985 5666765432211134678999999862 22222 11 10 000
Q ss_pred HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH-----HcCCCCeEEEeC--cCCCCCHHHHHHHHHHHHHHHhcC
Q 022337 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART-----LANEPEVLLLDE--PTSALDPISTQNIEDVLVKLKKKH 244 (298)
Q Consensus 172 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra-----l~~~p~illLDE--Pts~LD~~~~~~~~~~l~~l~~~~ 244 (298)
.+...++++.+||||||||++|||| ++.+|+++|||| ||++||+..++.+.+.+.+ .
T Consensus 66 ------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~ 129 (178)
T 1ye8_A 66 ------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----P 129 (178)
T ss_dssp ------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----T
T ss_pred ------------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----C
Confidence 0124677888999999999999996 999999999999 9999999999999888865 3
Q ss_pred CcEEEEEc---cCHHHHHhhcCEEEEEeCCEEEE
Q 022337 245 GMTIVMVS---HSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 245 g~tii~it---Hd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
+.|+|++| ||.+.+..+|+| .+|++++
T Consensus 130 ~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 130 NVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 67788888 599999999998 5677765
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-31 Score=247.13 Aligned_cols=178 Identities=16% Similarity=0.221 Sum_probs=142.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHH--hcceEEEeCCCC-CCc
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSL--RRKVGMLFQIPA-LFE 151 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--~~~ig~v~Q~~~-l~~ 151 (298)
.++.+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+... ..+ +..++|++|++. +++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 3467899999999999999999999999999999999999999999998765321 222 357999999998 887
Q ss_pred c-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC--eEEEeCcCCCCCHH
Q 022337 152 G-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPI 228 (298)
Q Consensus 152 ~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~--illLDEPts~LD~~ 228 (298)
. +++||+.++.. .+.. ..+++.+|+. +..++++.+|| |||++||||++.+|+ +|+|| ||+|||+.
T Consensus 169 ~~~v~e~l~~~~~-~~~d------~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~ 236 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EGYD------VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 236 (302)
T ss_dssp HHHHHHHHHHHHH-TTCS------EEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred HHHHHHHHHHHHH-cCCc------chHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence 5 99999987532 1111 1245667875 45667788999 999999999999999 99999 99999998
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcc---------CHHHHHhhcCEEEEEeCCEEE
Q 022337 229 STQNIEDVLVKLKKKHGMTIVMVSH---------SIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 229 ~~~~~~~~l~~l~~~~g~tii~itH---------d~~~~~~~~d~v~vl~~G~i~ 274 (298)
.+ ++++.++.|.|+|++|| .++.+..+++.|.++..|+.+
T Consensus 237 ~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 237 PQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp HH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 55 24454445899999999 677787888999999999753
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-31 Score=259.27 Aligned_cols=196 Identities=18% Similarity=0.183 Sum_probs=157.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE---eCCCCC-----H
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR---DITDLD-----V 133 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~---~i~~~~-----~ 133 (298)
++++++++++.|..+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+ ++..+. .
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4689999999996456799999 999999999999999999999999999999999999999998 443211 2
Q ss_pred HHHhcceEEEeCC-CCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 134 LSLRRKVGMLFQI-PALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 134 ~~~~~~ig~v~Q~-~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
..+++.++|++|+ ..+++ .++.+|+.+....... +..... .+.+ .+..||+|| |||+|| +.
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-----------~~~~v~-~~ld-~l~~lS~g~-qrvslA---l~ 271 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-----------RGQHVL-LIMD-SLTRYAMAQ-REIALA---IG 271 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-----------TTCEEE-EEEE-CHHHHHHHH-HHHHHH---TT
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-----------CCCCHH-HHHH-hHHHHHHHH-HHHHHH---hC
Confidence 3467889999995 44454 4999999875422110 000111 1222 256799999 999999 88
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh---cCCc-----EEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKK---KHGM-----TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~---~~g~-----tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|++ |+|||+..+..+.+++.++.+ +.|. ||+++|||++ ..+||++++|.+|+|+.++++.++.
T Consensus 272 ~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 272 EPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp CCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred CCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHcc
Confidence 9988 999999999999999999865 2375 9999999999 5789999999999999998887653
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-30 Score=242.16 Aligned_cols=175 Identities=16% Similarity=0.228 Sum_probs=142.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHH--hcceEEEeCCCC-CCcc-
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSL--RRKVGMLFQIPA-LFEG- 152 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--~~~ig~v~Q~~~-l~~~- 152 (298)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+.+... ..+ +..++|++|++. +++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46899999999999999999999999999999999999999999998765321 122 457999999998 7775
Q ss_pred cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC--eEEEeCcCCCCCHHHH
Q 022337 153 TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPIST 230 (298)
Q Consensus 153 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~--illLDEPts~LD~~~~ 230 (298)
++++|+.++.. .+.. ..+++.+|+. +..++++.+|| |||++||||++.+|+ +|+|| ||+|||+.++
T Consensus 228 tv~e~l~~~~~-~~~d------~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~ 295 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD------VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 295 (359)
T ss_dssp HHHHHHHHHHH-TTCS------EEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred hHHHHHHHHHh-CCCH------HHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH
Confidence 99999987532 1111 1245667775 35667788999 999999999999999 99999 9999999865
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcc---------CHHHHHhhcCEEEEEeCCEE
Q 022337 231 QNIEDVLVKLKKKHGMTIVMVSH---------SIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 231 ~~~~~~l~~l~~~~g~tii~itH---------d~~~~~~~~d~v~vl~~G~i 273 (298)
. +++.++.|.|+|++|| .++.+..+++.|.++..|+.
T Consensus 296 ~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 296 A------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp H------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred H------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 3 3444445899999999 57777788899999999964
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-32 Score=238.91 Aligned_cols=179 Identities=15% Similarity=0.155 Sum_probs=125.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhcceEEEeCCCCCCcc-c-H
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRRKVGMLFQIPALFEG-T-V 154 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~ig~v~Q~~~l~~~-t-v 154 (298)
..|+|+||+|++|++++|+||||||||||+|+|+|++ | |+|.+ |.++...+. ...++.++|+||++.+|+. + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 877643221 1235679999999877653 2 2
Q ss_pred HHHhHhC---ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH-----HHHHcCCCCeEEEeCcCCCCC
Q 022337 155 VDNIRYG---PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL-----ARTLANEPEVLLLDEPTSALD 226 (298)
Q Consensus 155 ~eni~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i-----Aral~~~p~illLDEPts~LD 226 (298)
.+++.++ ...++ ...+.+.++++...+. +.+ .+|||||+||++| ||+|+.+|++++|||||+++|
T Consensus 87 ~~~l~~~~~~~~~~g--~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 87 EDFLEYDNYANNFYG--TLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp TCEEEEEEETTEEEE--EEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred cchhhhhhcccccCC--CcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 2333221 11111 2245567777765431 233 5799999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc------CCcEEEEEccCHHHHHhhcCEEEE
Q 022337 227 PISTQNIEDVLVKLKKK------HGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~~~------~g~tii~itHd~~~~~~~~d~v~v 267 (298)
..+...+.+.+.++.++ .+.+.|+++||++++...+++++.
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 160 TENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 99999999988876543 356677788888777777666543
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-29 Score=237.92 Aligned_cols=197 Identities=18% Similarity=0.211 Sum_probs=145.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC-------CCHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD-------LDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~-------~~~~ 134 (298)
++++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ....
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4689999999996466899999 9999999999999999999999999999999999999999875211 1112
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
.+++.+.+++|... +..+.+.... ....+.+.....+-+--..-+.+..||+|| |||++| +.+|+
T Consensus 123 ~~~~~v~~~~~~~~----~~~~r~~~~~-------~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~ 187 (347)
T 2obl_A 123 TLSKCVLVVTTSDR----PALERMKAAF-------TATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPD 187 (347)
T ss_dssp HHTTEEEEEECTTS----CHHHHHHHHH-------HHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCC
T ss_pred hhhceEEEEECCCC----CHHHHHHHHH-------HHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCC
Confidence 24455777777432 2222221100 000011111111110000114577899999 999999 68888
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKK-KHGM-----TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~-~~g~-----tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+ |+||||.....+.+++.++.+ +.|. ||+++|||++ ..+||++++|.+|+|+.++++.++
T Consensus 188 ~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 188 V------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp C------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred c------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence 7 999999999999999999864 4587 9999999998 578999999999999999887765
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-29 Score=227.41 Aligned_cols=148 Identities=18% Similarity=0.272 Sum_probs=100.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCcc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLT 170 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~ 170 (298)
.++|+||||||||||+|+|+|+..|++|+|.++|+++... ..++.++|++|++.+++. ||.||+.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH
Confidence 4899999999999999999999999999999999987432 235779999999988874 999999998654322 12
Q ss_pred HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 022337 171 ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250 (298)
Q Consensus 171 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~ 250 (298)
.+.+.+.+. ..+.+..+.+||||||||+++|||++. ++++|||+++||+.. .+.++++.+. .++|+
T Consensus 80 ~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~ 145 (270)
T 3sop_A 80 WEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIP 145 (270)
T ss_dssp SHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEE
T ss_pred HHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEE
Confidence 233444443 235566778999999999999999886 999999999999987 4455555442 78888
Q ss_pred EccCHHH
Q 022337 251 VSHSIKQ 257 (298)
Q Consensus 251 itHd~~~ 257 (298)
|.|..+.
T Consensus 146 Vi~K~D~ 152 (270)
T 3sop_A 146 VIAKADT 152 (270)
T ss_dssp EETTGGG
T ss_pred EEecccc
Confidence 8887653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-30 Score=238.29 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=138.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHhcCCCCC
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNME-----------------------IPKGVIMGIIGPSGSGKSTLLRALNRLWEPP 117 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~-----------------------i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~ 117 (298)
...|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|+
T Consensus 41 ~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp TCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 34689999999993 677777765 8999999999999999999999999999998
Q ss_pred ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC--CccHHHHHHHHHHcCCCchhhcCCCCCC
Q 022337 118 SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEI 195 (298)
Q Consensus 118 ~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~L 195 (298)
.|. +++++|+|++.+++.|+.||+.+... ++. ..+.+.+.+.++.++ . ...+.++.+|
T Consensus 118 ~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~-~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~l 177 (312)
T 3aez_A 118 DHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHR-KGFPESYNRRALMRFVTSVK-S-GSDYACAPVY 177 (312)
T ss_dssp TTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTC-TTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEE
T ss_pred CCC-----------------CeEEEEecCccCCcccHHHHHHHHHh-cCCChHHHHHHHHHHHHHhC-C-CcccCCcccC
Confidence 663 46999999998887799999976421 222 223566778888887 3 2345667899
Q ss_pred ChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH-HhhcCEEEEEeCCE
Q 022337 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI-QRIADVVCLLVNGE 272 (298)
Q Consensus 196 SgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~-~~~~d~v~vl~~G~ 272 (298)
||||+||+++|||++.+|+|||||||++.+|+.. . .+.+..+ ..|+|+|+.+.. ..+++|.+.+.+|+
T Consensus 178 S~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~---~l~~~~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 178 SHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----L---MVSDLFD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp ETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----C---CGGGGCS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred ChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----H---HHHHhcC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998622 1 1222234 457788888653 44566666565653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-28 Score=230.02 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=110.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
+++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ....++.++++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~--~~~~~~~i~~~~g------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV--FKHHKNYTQLFFG------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC--CSSCSSEEEEECB-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc--cccchhEEEEEeC-------------
Confidence 7999999999999999999999999999999999999999999999865221 1112344554430
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHH
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~ 238 (298)
|||+||++|||||..+|++|++||||+ .++.+.|+
T Consensus 225 --------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~ 259 (330)
T 2pt7_A 225 --------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYN 259 (330)
T ss_dssp --------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHH
T ss_pred --------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHH
Confidence 899999999999999999999999998 24567777
Q ss_pred HHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 239 ~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
.+.. .+.|+|+++|+.+ +...|||+++|.+|+
T Consensus 260 ~~~~-g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 260 VLCS-GHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHT-TCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred HHhc-CCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 7754 2458999999998 667899999999885
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-30 Score=253.05 Aligned_cols=181 Identities=18% Similarity=0.203 Sum_probs=133.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeE-EEeCCcEEEEEcCCCccHHHHHHH--HhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNM-EIPKGVIMGIIGPSGSGKSTLLRA--LNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl-~i~~Ge~~~iiG~nGsGKSTLlk~--l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
+++.+++.+. .++.++|+++|| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|++.. ......++.
T Consensus 12 ~~~~~~~~~~-~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~-~~~~~~~~~ 89 (525)
T 1tf7_A 12 NSEHQAIAKM-RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP-QDIIKNARS 89 (525)
T ss_dssp --CCSSCCEE-CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHGG
T ss_pred Cccccccccc-cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHHHH
Confidence 3555566554 456789999999 999999999999999999999999 78999999999999998731 122344577
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||+||++... +|+.+. ...... +..++++.+++. ++.++.+.+||+|| |+++++|
T Consensus 90 ~g~~~q~~~~~-----~~l~~~-~~~~~~----~~~~~l~~~~l~-~~~~~~~~~LS~g~-------------~~~lilD 145 (525)
T 1tf7_A 90 FGWDLAKLVDE-----GKLFIL-DASPDP----EGQEVVGGFDLS-ALIERINYAIQKYR-------------ARRVSID 145 (525)
T ss_dssp GTCCHHHHHHT-----TSEEEE-ECCCCS----SCCSCCSSHHHH-HHHHHHHHHHHHHT-------------CSEEEEE
T ss_pred cCCChHHhhcc-----CcEEEE-ecCccc----chhhhhcccCHH-HHHHHHHHHHHHcC-------------CCEEEEC
Confidence 99999986421 112111 000000 011233344443 35566677778775 7799999
Q ss_pred CcCC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH---------HhhcCEEEEEeC
Q 022337 220 EPTS-----ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI---------QRIADVVCLLVN 270 (298)
Q Consensus 220 EPts-----~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~---------~~~~d~v~vl~~ 270 (298)
|||+ +||+..++.+++++++++++ |+|+|++||+++.+ ..+||+|++|++
T Consensus 146 e~t~~~~~~~lD~~~~~~l~~ll~~l~~~-g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 146 SVTSVFQQYDASSVVRRELFRLVARLKQI-GATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp CSTTTSTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CHHHHHHhcCCHHHHHHHHHHHHHHHHHC-CCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 9998 46999999999999999764 99999999999984 556999999998
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-27 Score=218.20 Aligned_cols=185 Identities=18% Similarity=0.204 Sum_probs=129.5
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
.++|+++++.+++|++++|+||||||||||++.|+|.+.|++| .|.+.+.+. +..++++++..++|+..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh---hhc
Confidence 4689999999999999999999999999999999999999988 776654332 444555555555554432 222
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH-HHHHHHHHHHcCCCCeEEEeCcCC---C---CCH-
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ-AQRVALARTLANEPEVLLLDEPTS---A---LDP- 227 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kQRv~iAral~~~p~illLDEPts---~---LD~- 227 (298)
+++..+. +. .....+.+.++++..++ .....+.++|.+| +||+. |+++..+|+++|+||||+ + +|.
T Consensus 96 ~~l~~~~-~~-~~~~~~~~~~~l~~~~l---~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~ 169 (296)
T 1cr0_A 96 DSLKREI-IE-NGKFDQWFDELFGNDTF---HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDER 169 (296)
T ss_dssp HHHHHHH-HH-HTHHHHHHHHHHSSSCE---EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------C
T ss_pred cccccCC-CC-HHHHHHHHHHHhccCCE---EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHH
Confidence 3333221 00 01111223333333333 1234456799999 67777 999999999999999999 5 565
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCH--H--------------------HHHhhcCEEEEEeCCEE
Q 022337 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSI--K--------------------QIQRIADVVCLLVNGEI 273 (298)
Q Consensus 228 ~~~~~~~~~l~~l~~~~g~tii~itHd~--~--------------------~~~~~~d~v~vl~~G~i 273 (298)
.....+++.|++++++.|+|||++||+. + .+..+||+|++|++|+.
T Consensus 170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 170 KMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 6778899999999877799999999995 5 78889999999999875
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-27 Score=249.41 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=128.2
Q ss_pred CCCeEEEEe-----EEEEeCCCCcceeeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe
Q 022337 60 QKPKFRVRE-----LRKESDDGAPILKGVNMEIPK-------GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD 127 (298)
Q Consensus 60 ~~~~l~~~~-----l~~~y~~~~~vL~~isl~i~~-------Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~ 127 (298)
..++|+++| |++.|.++..+++|++|++++ |++++|+||||||||||||++ |++.+
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 345799999 999985456899999999987 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcceE-EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 128 ITDLDVLSLRRKVG-MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 128 i~~~~~~~~~~~ig-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
..++| ||||++. ..++.|+|.. .+|+.+ ...+..+++|+++++ +++|
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-------------------rig~~d-~~~~~~stf~~em~~-~a~a 862 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-------------------RLGASD-RIMSGESTFFVELSE-TASI 862 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-------------------ECC----------CHHHHHHHH-HHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-------------------HcCCHH-HHhhchhhhHHHHHH-HHHH
Confidence 23466 9999863 3466555531 123221 122344567887765 9999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE
Q 022337 207 RTLANEPEVLLLDEPTSALDPIST-QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~-~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~ 274 (298)
++++.+|+++|||||++|+|+... ..++++|..+.++.|.++|++||+++.+..+||++.++ +|++.
T Consensus 863 l~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 863 LMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 999999999999999999999885 55788888887655899999999999999999998886 58877
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-26 Score=215.69 Aligned_cols=85 Identities=28% Similarity=0.277 Sum_probs=77.2
Q ss_pred CCCC-CCChhHHHHHHHHHHHc---------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 190 KTGG-EISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 190 ~~~~-~LSgGqkQRv~iAral~---------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
+++. .||||||||++||++|+ .+|+||||||||++||+..+..+++.|.++. .|+|++||. +.
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~-- 332 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP-- 332 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT--
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc--
Confidence 3456 79999999999999999 8999999999999999999999999998763 699999995 43
Q ss_pred hhcCEEEEEeCCEEEEeeChhhh
Q 022337 260 RIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 260 ~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
.||++++|++|+++..|+++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTTS
T ss_pred -cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998876
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-26 Score=239.57 Aligned_cols=161 Identities=24% Similarity=0.317 Sum_probs=126.8
Q ss_pred HHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc--C--CC------ccHHHH
Q 022337 105 TLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR--G--KK------LTENEV 174 (298)
Q Consensus 105 TLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~--~--~~------~~~~~~ 174 (298)
|...|..+.++|..|+|+++|+++..+. ..++.+++.|..... . .. ...++.
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~------------------~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFT------------------ELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHH------------------HSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHHhh------------------hCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 3456777889999999999999874321 124555554421110 0 00 011334
Q ss_pred HHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC--eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 022337 175 YKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252 (298)
Q Consensus 175 ~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~--illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~it 252 (298)
.+.+..+|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+...+.+++.|+++.++ |.|||+||
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVt 523 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVE 523 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEEC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 5678889996323689999999999999999999999887 99999999999999999999999999754 99999999
Q ss_pred cCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhcc
Q 022337 253 HSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 253 Hd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~ 285 (298)
||++.+. .||+|++| ++|++++.|+++++...
T Consensus 524 Hd~~~~~-~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 524 HDEEVIR-NADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp CCHHHHH-TCSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred CCHHHHH-hCCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 9999886 49999999 89999999999988643
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-26 Score=227.81 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=124.1
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcc
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ 163 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~ 163 (298)
+..|++|++++|+||||||||||+++++|+..|+ |+ +.+.+++|++. .++.++...
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~--- 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYS--- 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHT---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHH---
Confidence 4589999999999999999999999999998874 43 11456666641 244444321
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH-----HHHHHHHHHH
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI-----STQNIEDVLV 238 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~-----~~~~~~~~l~ 238 (298)
.+.. +.+ +...|+. .+.+.++.+|||||+||+++|+++..+|++||+| ||++||+. .++.+.++++
T Consensus 331 -~g~~-----~~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~ 401 (525)
T 1tf7_A 331 -WGMD-----FEE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTG 401 (525)
T ss_dssp -TSCC-----HHH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHH
T ss_pred -cCCC-----HHH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHH
Confidence 1111 112 2345554 4667889999999999999999999999999999 99999999 9999999999
Q ss_pred HHHhcCCcEEEEEccCH----------HHHHhhcCEEEEEeCCE
Q 022337 239 KLKKKHGMTIVMVSHSI----------KQIQRIADVVCLLVNGE 272 (298)
Q Consensus 239 ~l~~~~g~tii~itHd~----------~~~~~~~d~v~vl~~G~ 272 (298)
.+++ .|.|+|++||+. ..+..+||+|++|++|+
T Consensus 402 ~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 402 YAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8865 499999999999 77888999999999987
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-25 Score=205.62 Aligned_cols=80 Identities=29% Similarity=0.364 Sum_probs=71.9
Q ss_pred hcCCCCCCChhHHH------HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh
Q 022337 188 LNKTGGEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 188 ~~~~~~~LSgGqkQ------Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~ 261 (298)
.++++.+||||||| |+++||||+.+|++|||||||++||+..+..+.+.|.++.++ |.|||+||||.+ +..+
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~-~~~~ 319 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE-LKDA 319 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG-GGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH-HHHh
Confidence 35678899999999 678889999999999999999999999999999999998655 889999999965 5678
Q ss_pred cCEEEEEe
Q 022337 262 ADVVCLLV 269 (298)
Q Consensus 262 ~d~v~vl~ 269 (298)
||++++|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999885
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-25 Score=216.26 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCCC-ChhHHHHHHHHHHHcCCC--CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 191 TGGEI-SVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 191 ~~~~L-SgGqkQRv~iAral~~~p--~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
++.+| ||||||||+|||||+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+||||++.+. +||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEE
Confidence 45677 999999999999999999 99999999999999999999999999975 799999999999775 6999999
Q ss_pred EeCC
Q 022337 268 LVNG 271 (298)
Q Consensus 268 l~~G 271 (298)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-26 Score=204.16 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=109.6
Q ss_pred CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-cc
Q 022337 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GT 153 (298)
Q Consensus 75 ~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~t 153 (298)
+++++|+|+||++++|+++||+||||||||||+|+|+|++ |.+.++ ..++.++|++|+. +++ .|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccC
Confidence 4567999999999999999999999999999999999976 555443 2467899999996 555 59
Q ss_pred HHHHhHhCccccCC----CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHH
Q 022337 154 VVDNIRYGPQLRGK----KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229 (298)
Q Consensus 154 v~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~ 229 (298)
+.+++.+....... ..+.+.+.+.++.+. +..+.++..||+||+||+++ ++++.+|+++|+|||....|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~- 149 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE- 149 (245)
T ss_dssp HHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH-
T ss_pred HhHhhhhhccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH-
Confidence 99998764332221 112344556665431 23456788999999999988 6889999999999999888764
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccC-HHHHHhhcCEEEEEeCCE
Q 022337 230 TQNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 230 ~~~~~~~l~~l~~~~g~tii~itHd-~~~~~~~~d~v~vl~~G~ 272 (298)
+.++ .+.+|+++||+ ......+++++ ++|+
T Consensus 150 -------l~~~---~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 150 -------IRDM---FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp -------HHTT---CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred -------HHHh---cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 2222 27899999997 44445555555 6675
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-25 Score=194.53 Aligned_cols=151 Identities=18% Similarity=0.215 Sum_probs=105.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-------CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-------PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-------~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
-|++|++++|+||||||||||+++|+|++.| ..|.+++++.+. .. .+++++++|...+++.++.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999996655 445888887652 11 2346777888777777888888
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH-------cCCCCeEEEeCcCCCCCHHH--
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL-------ANEPEVLLLDEPTSALDPIS-- 229 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral-------~~~p~illLDEPts~LD~~~-- 229 (298)
.+.... . .. .+++.+..++++ ..+|+++++||||+++|+..
T Consensus 95 ~~~~~~---~--~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~ 144 (231)
T 4a74_A 95 YVARAF---N--SN-------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG 144 (231)
T ss_dssp EEEECC---S--HH-------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCS
T ss_pred EEEecC---C--hH-------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCC
Confidence 764321 0 00 011112222222 45899999999999999842
Q ss_pred ----------HHHHHHHHHHHHhcCCcEEEEEcc----CHHHHHhhcCEEEEEeCCE
Q 022337 230 ----------TQNIEDVLVKLKKKHGMTIVMVSH----SIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 230 ----------~~~~~~~l~~l~~~~g~tii~itH----d~~~~~~~~d~v~vl~~G~ 272 (298)
..++++.|.+++++.|+|||++|| +...+..+||++++|++|+
T Consensus 145 ~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 145 RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 237888888887667999999999 5555889999999999763
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-24 Score=225.74 Aligned_cols=168 Identities=18% Similarity=0.186 Sum_probs=120.3
Q ss_pred CCeEEEEeEEEEeC----CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------hcCCCCCccEEEECCEeC
Q 022337 61 KPKFRVRELRKESD----DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--------NRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 61 ~~~l~~~~l~~~y~----~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l--------~gl~~p~~G~I~i~g~~i 128 (298)
...+++++....+- +++.+++|+||++++|++++|+||||||||||||++ .|.+-|.++..
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------- 701 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------- 701 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------
Confidence 34577777654331 234799999999999999999999999999999999 45444433211
Q ss_pred CCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 129 TDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 129 ~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
++.+ . +++..+|+.+ .....+|+|++++..+|++
T Consensus 702 -----------~~~~-------d------------------------~i~~~ig~~d----~l~~~lStf~~e~~~~a~i 735 (934)
T 3thx_A 702 -----------VSIV-------D------------------------CILARVGAGD----SQLKGVSTFMAEMLETASI 735 (934)
T ss_dssp -----------EECC-------S------------------------EEEEECC-------------CHHHHHHHHHHHH
T ss_pred -----------chHH-------H------------------------HHHHhcCchh----hHHHhHhhhHHHHHHHHHH
Confidence 0100 0 0111223321 2234578888888888888
Q ss_pred H--cCCCCeEEEeCcCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 209 L--ANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 209 l--~~~p~illLDEPts~LD~~~~~~~-~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+ +.+|+++||||||+|+|+.....+ ..++..+.++.|+|+|++||+.+.+ .+||++..+++|++...++.+++
T Consensus 736 l~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 736 LRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence 8 999999999999999999998888 6666777654589999999997765 68999999999999887776654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=217.68 Aligned_cols=130 Identities=23% Similarity=0.357 Sum_probs=108.3
Q ss_pred cccHHHHhHhCccccCCCcc------------HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC--CeE
Q 022337 151 EGTVVDNIRYGPQLRGKKLT------------ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP--EVL 216 (298)
Q Consensus 151 ~~tv~eni~~~~~~~~~~~~------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p--~il 216 (298)
..||.|++.|...+ ..+.. .+++ +.+..+||+.-..++.+.+|||||||||+||++|..+| ++|
T Consensus 451 ~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 451 AMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp TSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 46999999984322 22110 1223 45788999632268999999999999999999999985 999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~ 284 (298)
||||||++|||...+.+++.|+++.+ .|.|||+|+||++.+. .||+|++| ++|++++.|+++++..
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999965 5999999999999875 69999999 7999999999998865
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-24 Score=218.18 Aligned_cols=181 Identities=24% Similarity=0.278 Sum_probs=134.4
Q ss_pred CCCccHHHHHHHHhcC---------CCCCccEEEECCEeCCC---CCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 98 PSGSGKSTLLRALNRL---------WEPPSGTVFLDGRDITD---LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 98 ~nGsGKSTLlk~l~gl---------~~p~~G~I~i~g~~i~~---~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
.+..||+|+.+.+... ++|..|+|.++|++|.+ ++..+....+.-++|++.... + +...+.....
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 346 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRPEQA 346 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCSSHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcchhhH
Confidence 4667999999998874 45678999999998865 333333333344444432111 1 0111110000
Q ss_pred C-----CCccHHHHHHHHHHcCCCchh-hcCCCCCCChhHHHHHHHHHHHcCCC--CeEEEeCcCCCCCHHHHHHHHHHH
Q 022337 166 G-----KKLTENEVYKLLSLADLDSSF-LNKTGGEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVL 237 (298)
Q Consensus 166 ~-----~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkQRv~iAral~~~p--~illLDEPts~LD~~~~~~~~~~l 237 (298)
. .....+++. .+..+|+. .+ .++++.+|||||||||+||++|+.+| ++|||||||++||+...+.++++|
T Consensus 347 ~i~~~i~~ei~~rl~-~L~~vGL~-~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l 424 (842)
T 2vf7_A 347 IALQRMAADLVKRLD-VLLHLGLG-YLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSAL 424 (842)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTCT-TSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHhCCCC-cCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHH
Confidence 0 001123343 67889996 34 68999999999999999999999999 599999999999999999999999
Q ss_pred HHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhcc
Q 022337 238 VKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 238 ~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~ 285 (298)
+++.+ .|.|||+|+||++.+ ..||+|++| ++|++++.|+++++...
T Consensus 425 ~~L~~-~G~TVIvVeHdl~~l-~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 425 ENLKR-GGNSLFVVEHDLDVI-RRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHT-TTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHH-cCCEEEEEcCCHHHH-HhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 99965 599999999999977 579999999 79999999999988653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-24 Score=196.04 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=103.9
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++
T Consensus 6 ~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSI 74 (261)
T ss_dssp CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSE
T ss_pred CChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCccee
Confidence 455566532 5899999 9999999999999999999999999999998 999999987653211 111222
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
++|. .++++. ..| |++||+||..+|+++++||||
T Consensus 75 v~q~---------------------------------~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~ 108 (261)
T 2eyu_A 75 VNQR---------------------------------EVGEDT-------KSF------ADALRAALREDPDVIFVGEMR 108 (261)
T ss_dssp EEEE---------------------------------EBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC
T ss_pred eeHH---------------------------------HhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC
Confidence 2221 233321 122 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
|+.+...++ +.. + .|.+|+++||+.+ +...|||+++|.
T Consensus 109 ---D~~~~~~~l---~~~-~-~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 109 ---DLETVETAL---RAA-E-TGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp ---SHHHHHHHH---HHH-H-TTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred ---CHHHHHHHH---HHH-c-cCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 998866544 333 3 3899999999987 557788875553
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-23 Score=196.92 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=68.3
Q ss_pred CCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 192 GGEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 192 ~~~LSgGqkQRv~iAral~----~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|.++.++ +.++|+|||+.... ..||++++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~~ii~th~~~~~-~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-DLQFIVISLKNTMF-EKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-TBEEEEECSCHHHH-TTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC-CCEEEEEECCHHHH-HhCCEEEE
Confidence 4459999999999999999 689999999999999999999999999988543 78999999997655 67999998
Q ss_pred Ee
Q 022337 268 LV 269 (298)
Q Consensus 268 l~ 269 (298)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-25 Score=203.89 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=88.7
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC-CCCCccEEEECCEeCCCCCHHHHhcceEEEeC
Q 022337 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL-WEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl-~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q 145 (298)
.||++.|+ ++.++++++|+| +|+||||||||||+++|.|. ..|++| |.++|.++.. . .. .+.+++++|
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVEIE 70 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEEec
Confidence 47889994 678999999998 99999999999999999998 899999 9888887643 1 11 356899999
Q ss_pred CCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCC
Q 022337 146 IPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224 (298)
Q Consensus 146 ~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~ 224 (298)
+..++. .|+.|+..++..... .++...+.+. +. +..++++.++|||||||+.+|||++ ++++||||++
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~~~----~e~~~~l~~~--l~-~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAINC----RDCFKTIISY--ID-EQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp ---CCEEEEEEEEC---------------CTTHHHH--HH-HHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred CCCcccCcchhhhhhhhhhcCc----HHHHHHHHHH--HH-HHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 887664 588888877543210 1111111221 11 2345677899999999999999986 9999999985
Q ss_pred -CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 225 -LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 225 -LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
||+... +.++++.++.+.++|+++||+.
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 5566665545889999999974
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-24 Score=200.61 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=111.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHH--hcceEEEeCCCCCCcc-cHHHHhHhC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSL--RRKVGMLFQIPALFEG-TVVDNIRYG 161 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--~~~ig~v~Q~~~l~~~-tv~eni~~~ 161 (298)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|+.+... ..+ +..++|++|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999865431 122 3569999999988875 999999865
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~ 241 (298)
... +... .+++..|+. +...+.+ +..++||++||||++.+|+.++| .||+.+...+++.++++.
T Consensus 181 ~~~-~~d~------~llDt~G~~-~~~~~~~---~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~ 244 (304)
T 1rj9_A 181 KAR-GYDL------LFVDTAGRL-HTKHNLM---EELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFH 244 (304)
T ss_dssp HHH-TCSE------EEECCCCCC-TTCHHHH---HHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHH
T ss_pred HhC-CCCE------EEecCCCCC-CchHHHH---HHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHH
Confidence 211 1110 122334543 1222333 44458999999999999995444 456655666777777776
Q ss_pred hcCCcEEEEEccCHH
Q 022337 242 KKHGMTIVMVSHSIK 256 (298)
Q Consensus 242 ~~~g~tii~itHd~~ 256 (298)
++.|.|+|++||+.+
T Consensus 245 ~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHCCSEEEEECTTS
T ss_pred HHcCCcEEEEECCcc
Confidence 555899999999843
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-23 Score=169.47 Aligned_cols=84 Identities=30% Similarity=0.359 Sum_probs=75.5
Q ss_pred hcCCCCCCChhHHHHHHHH------HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh
Q 022337 188 LNKTGGEISVGQAQRVALA------RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iA------ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~ 261 (298)
.++++.+||||||||++|| |||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++|||++ +..+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~-~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE-LKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG-GGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH-HHHh
Confidence 4678899999999999876 9999999999999999999999999999999998654 899999999995 6689
Q ss_pred cCEEEEE--eCCEE
Q 022337 262 ADVVCLL--VNGEI 273 (298)
Q Consensus 262 ~d~v~vl--~~G~i 273 (298)
||++++| ++|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 56643
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-24 Score=187.06 Aligned_cols=169 Identities=13% Similarity=0.110 Sum_probs=121.0
Q ss_pred CCcceeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh---cceEEEeCCCCCCc
Q 022337 76 GAPILKGVNM-EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR---RKVGMLFQIPALFE 151 (298)
Q Consensus 76 ~~~vL~~isl-~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~---~~ig~v~Q~~~l~~ 151 (298)
+.+.|+++.. .+++|++++|+||||||||||++.|++...++.|.|.+.+.+. +...++ ..+++.+|+...
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-- 82 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE-- 82 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT--
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh--
Confidence 4568899988 8999999999999999999999999998888888888866443 222222 123443332110
Q ss_pred ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC--eEEEeCcCCCC--CH
Q 022337 152 GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSAL--DP 227 (298)
Q Consensus 152 ~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~--illLDEPts~L--D~ 227 (298)
+++.+.. ... . . .+ . .+. ....|.++.++...+.+...+|+ ++++||||+.+ |+
T Consensus 83 ----~~~~~~~---~~~---~----~---~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~ 140 (235)
T 2w0m_A 83 ----KKLIIID---ALM---K----E---KE-D-QWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP 140 (235)
T ss_dssp ----TTEEEEE---CCC---------------C-TTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG
T ss_pred ----CCEEEEe---ccc---c----c---cC-c-eee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH
Confidence 0111000 000 0 0 01 1 111 12349999999888888888999 99999999888 99
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCH--------HHHHhhcCEEEEEeCC
Q 022337 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSI--------KQIQRIADVVCLLVNG 271 (298)
Q Consensus 228 ~~~~~~~~~l~~l~~~~g~tii~itHd~--------~~~~~~~d~v~vl~~G 271 (298)
....++++.|++++++.|.|||++||+. ..+..+||+|++|+..
T Consensus 141 ~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 141 AMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999999999999877799999999999 4588999999999864
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-24 Score=187.51 Aligned_cols=175 Identities=16% Similarity=0.186 Sum_probs=104.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC-----CCCccEEEECC-------EeCCC
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW-----EPPSGTVFLDG-------RDITD 130 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-----~p~~G~I~i~g-------~~i~~ 130 (298)
+++++|+++.|+ ..++++ |++++|+.++|+|+||||||||++.|+|.. .|+.|.+.+.+ ..+.+
T Consensus 3 ~l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp --------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred chhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 589999999994 368888 899999999999999999999999999998 88888876422 11111
Q ss_pred CC-----------HHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChh
Q 022337 131 LD-----------VLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVG 198 (298)
Q Consensus 131 ~~-----------~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 198 (298)
.+ ...+++.+++++|+....+. .+..++.. .....+.++.+.++..+++.-....+...+|+|
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH-----PLKDLDQQMIEWAVDSNIAVLVLLTKADKLASG 153 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS-----CCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHH
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC-----CCchhHHHHHHHHHHcCCCeEEEEecccCCCch
Confidence 00 00111122222222111110 10000100 011123345666777787532346678889999
Q ss_pred HHHH-HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 022337 199 QAQR-VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247 (298)
Q Consensus 199 qkQR-v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~t 247 (298)
|+|| +..+++++.+|+++++|||||++|+.+..++++.|.++.++ +.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~ 202 (210)
T 1pui_A 154 ARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP 202 (210)
T ss_dssp HHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence 9999 89999999999999999999999999999999999988654 544
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-23 Score=219.12 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=108.5
Q ss_pred CeEEEEeEEEEe-----C-CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH
Q 022337 62 PKFRVRELRKES-----D-DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 62 ~~l~~~~l~~~y-----~-~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~ 135 (298)
..+.+++..... . +++.|++|+||++++|++++|+||||||||||||+++++.-..
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 357777655322 1 2457999999999999999999999999999999998642110
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+.-.++|+....+ .+.+ +++..+++.+ ...+..+++|+||+|++.|+++ +.+|++
T Consensus 701 --q~g~~vpa~~~~i--~~~d-------------------~i~~~ig~~d-~l~~~~stfs~em~~~~~il~~-a~~p~L 755 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVD-------------------GIFTRMGAAD-NIYKGRSTFMEELTDTAEIIRK-ATSQSL 755 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCS-------------------EEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCE
T ss_pred --hcCccccchhhhh--hHHH-------------------HHHHhCChHH-HHHHhHHHhhHHHHHHHHHHHh-ccCCCE
Confidence 0011222211000 0000 0112233332 2345567899999999999999 899999
Q ss_pred EEEeCcCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEccCHHHHHhhcCEE
Q 022337 216 LLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tii~itHd~~~~~~~~d~v 265 (298)
+||||||+|||+.....+. .++..+.++.|.|+|++||+++.+ .+||+.
T Consensus 756 lLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~ 805 (918)
T 3thx_B 756 VILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY 805 (918)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence 9999999999999999987 667777655699999999998866 466653
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-25 Score=194.20 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=118.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc---ccHHHHhHhCcc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE---GTVVDNIRYGPQ 163 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~---~tv~eni~~~~~ 163 (298)
.++|+++||+||||||||||+++|+|++.| .++|++|++.+++ .++.++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 5899999987763 388888766432
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH----HHHHHHHHHHcCCCCeEEEeCcCCC-------CCHHHHHH
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ----AQRVALARTLANEPEVLLLDEPTSA-------LDPISTQN 232 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq----kQRv~iAral~~~p~illLDEPts~-------LD~~~~~~ 232 (298)
.. ...+.+++.++++.+++.+ ..+.++.++|+|| +||+++|++++.+|+++++||||++ ||+.....
T Consensus 61 ~~-~~~~~~~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~ 138 (211)
T 3asz_A 61 HP-DAFDLALYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADER 138 (211)
T ss_dssp SG-GGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHH
T ss_pred Ch-hhhhHHHHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHH
Confidence 11 1224566788888888863 5567788999996 4789999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCcEEEEEccCHH
Q 022337 233 IEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 233 ~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
+.+.+.+..++.|.|+++++|+..
T Consensus 139 ~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 139 FIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999998865445899999999853
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-24 Score=200.44 Aligned_cols=167 Identities=18% Similarity=0.199 Sum_probs=116.5
Q ss_pred CCcceeee-eEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCc----cE-EEECCEeCCCCCHHHHhcceEEEeCCC
Q 022337 76 GAPILKGV-NMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPS----GT-VFLDGRDITDLDVLSLRRKVGMLFQIP 147 (298)
Q Consensus 76 ~~~vL~~i-sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~----G~-I~i~g~~i~~~~~~~~~~~ig~v~Q~~ 147 (298)
+.+.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |. |++++++.. . ++++++++|.+
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~----~~~i~~i~q~~ 189 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNR 189 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--C----HHHHHHHHHTT
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--C----HHHHHHHHHHc
Confidence 34567666 6899999999999999999999999999998 6776 68 899987641 1 35688899998
Q ss_pred CCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc-------CCCCeEEEeC
Q 022337 148 ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA-------NEPEVLLLDE 220 (298)
Q Consensus 148 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~-------~~p~illLDE 220 (298)
.+++.++.+|+.+.... . |.+|+|++.++++++ .+|+++|+||
T Consensus 190 ~~~~~~v~~ni~~~~~~-----~-------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs 239 (349)
T 1pzn_A 190 GLDPDEVLKHIYVARAF-----N-------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 239 (349)
T ss_dssp TCCHHHHGGGEEEEECC-----S-------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET
T ss_pred CCCHHHHhhCEEEEecC-----C-------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence 87777888888764211 1 233455555555555 7899999999
Q ss_pred cCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 221 PTSALDPIS------------TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 221 Pts~LD~~~------------~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
||+++|+.. ..+++..|++++++.|+|||+++|.......+++...+...|++++++.
T Consensus 240 ~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 240 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp SSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred chHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999999862 4667777788877779999999999876654444555666676655443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-25 Score=224.73 Aligned_cols=189 Identities=20% Similarity=0.285 Sum_probs=119.0
Q ss_pred eEEEEeEEEEeCCC-Ccceeee----------eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECCEeCC-
Q 022337 63 KFRVRELRKESDDG-APILKGV----------NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDGRDIT- 129 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-~~vL~~i----------sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g~~i~- 129 (298)
.++++|+++.|..+ +++|+.+ +++++. +||+||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 58899999999532 2355544 366665 999999999999999999999989 8999999999862
Q ss_pred -CC-CHHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 130 -DL-DVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 130 -~~-~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
.. ....+++.+||+||++.+++. ||.+|+.+.... +...+- .+| ++++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~-------------~~~~~~----------~~s---~~~i~l~ 140 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA-------------IAGEGM----------GIS---HELITLE 140 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH-------------HHCSSS----------CCC---SCCEEEE
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH-------------hcCCcc----------ccc---hHHHHHH
Confidence 11 123467889999999998875 999999764211 000000 011 1223333
Q ss_pred HHHcCCCCeEEEeCc------CCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEccCHHH--------HHhh----cCEEEE
Q 022337 207 RTLANEPEVLLLDEP------TSALDPISTQNIEDVLVKLK-KKHGMTIVMVSHSIKQ--------IQRI----ADVVCL 267 (298)
Q Consensus 207 ral~~~p~illLDEP------ts~LD~~~~~~~~~~l~~l~-~~~g~tii~itHd~~~--------~~~~----~d~v~v 267 (298)
.+....|+++|+||| |+|||+..+..+.++++++. +..+.+++++|||++. +..+ +..|+|
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 444568999999999 99999999999999999964 4457889999999763 2222 245788
Q ss_pred EeCCEEEEeeChh
Q 022337 268 LVNGEIVEVLKPD 280 (298)
Q Consensus 268 l~~G~i~~~g~~~ 280 (298)
+.++.++..|+.+
T Consensus 221 lTK~Dlv~~g~~~ 233 (608)
T 3szr_A 221 LTKPDLVDKGTED 233 (608)
T ss_dssp EECGGGSSSSSTT
T ss_pred ecchhhcCcccHH
Confidence 8888777666644
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-23 Score=213.47 Aligned_cols=146 Identities=20% Similarity=0.259 Sum_probs=110.5
Q ss_pred CeEEEEeEEEEeC--CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCccEEEECCEeCCCCCHHHHhc
Q 022337 62 PKFRVRELRKESD--DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 62 ~~l~~~~l~~~y~--~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
+.+++++.....- ++..+++|+||+ |++++|+||||||||||+|+|+|+.. |+.|.+. + ..+.
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a~~~ 614 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--AEEA 614 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--SSEE
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--hhcc
Confidence 4578887743220 235799999999 99999999999999999999999874 6778652 1 1134
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH--cCCCCe
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL--ANEPEV 215 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral--~~~p~i 215 (298)
.+++++| +|+. ++.||+.. .+|+|++|++.+|+++ +.+|++
T Consensus 615 ~i~~v~~---i~~~~~~~d~l~~---------------------------------g~S~~~~e~~~la~il~~a~~p~L 658 (765)
T 1ewq_A 615 HLPLFDG---IYTRIGASDDLAG---------------------------------GKSTFMVEMEEVALILKEATENSL 658 (765)
T ss_dssp EECCCSE---EEEECCC---------------------------------------CCSHHHHHHHHHHHHHHHCCTTEE
T ss_pred ceeeHHH---hhccCCHHHHHHh---------------------------------cccHHHHHHHHHHHHHHhccCCCE
Confidence 5787776 3432 55555432 3588999999999999 999999
Q ss_pred EEEeCc---CCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 216 LLLDEP---TSALDPIST-QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 216 llLDEP---ts~LD~~~~-~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
+||||| |++||+.+. ..+.+.|.+ .|.|+|++||+.+.+ .+|
T Consensus 659 lLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~-~~~ 704 (765)
T 1ewq_A 659 VLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFELT-ALG 704 (765)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHH-TCC
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH-Hhh
Confidence 999999 999999876 578888765 288999999999876 455
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-25 Score=191.22 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=111.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL 169 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 169 (298)
|++++|+||||||||||+++|+|+++ ++| |.++|.++... ..+++++||++|+.. .+ ++++. .+. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~~---g~-~~~l~---~~~-~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTLS---GT-RGPLS---RVG-LEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEETT---SC-EEEEE---ECC-CCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEecc---cc-eehhh---ccc-ccC
Confidence 78999999999999999999999999 999 99999887543 245788999999862 11 11111 000 000
Q ss_pred cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH-HHHH---HHcCCCCeEEEeC--cCCCCCHHHHHHHHHHHHHHHhc
Q 022337 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV-ALAR---TLANEPEVLLLDE--PTSALDPISTQNIEDVLVKLKKK 243 (298)
Q Consensus 170 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv-~iAr---al~~~p~illLDE--Pts~LD~~~~~~~~~~l~~l~~~ 243 (298)
. ..... ....++...+|+|||+++ ++++ |++.+|++||+|| |+..+|+...+.+.+++. .
T Consensus 69 ~---------~~~~~-~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~ 134 (189)
T 2i3b_A 69 P---------PGKRE-CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T 134 (189)
T ss_dssp C---------SSSCC-EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C
T ss_pred C---------ccccc-cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C
Confidence 0 00011 134556778999999988 5555 6899999999999 899999976666555554 3
Q ss_pred CCcEEEE----EccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 244 HGMTIVM----VSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 244 ~g~tii~----itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
..++|+ ++||.+ ..++|+|..+.+|+|+...
T Consensus 135 -~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 135 -PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp -SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred -CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 334553 449874 2456777777899998754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-26 Score=213.57 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=129.1
Q ss_pred ceeeeeEEEeC--CcEEEEEcCCCccHHHHHHHHhcCCCCCc----cEEEEC----CEeCCCCCHHHHhcceEEEeCCCC
Q 022337 79 ILKGVNMEIPK--GVIMGIIGPSGSGKSTLLRALNRLWEPPS----GTVFLD----GRDITDLDVLSLRRKVGMLFQIPA 148 (298)
Q Consensus 79 vL~~isl~i~~--Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~----G~I~i~----g~~i~~~~~~~~~~~ig~v~Q~~~ 148 (298)
+.+.|+++|.+ |+.++|+||||||||||+|+|+|+++|++ |+|+++ |.++ ..+..++ +.|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 998873 4444 2333334 45888888776
Q ss_pred CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc-CCCCeEEEeC---cC--
Q 022337 149 LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA-NEPEVLLLDE---PT-- 222 (298)
Q Consensus 149 l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~-~~p~illLDE---Pt-- 222 (298)
++..|+.+|+.++.. ... +..+..+|+|++||..+++++. .+|++++||| |+
T Consensus 235 ~~~~t~~~nl~~~~~----~~~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~ 292 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT----DFI------------------TTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 292 (365)
T ss_dssp HHHHHHCSSEEEESS----CHH------------------HHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC---
T ss_pred HHHHhccCCEEEEeC----Cch------------------HHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCccc
Confidence 666688888765421 100 0111234567788888888874 6999999999 65
Q ss_pred ----CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 223 ----SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 223 ----s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
.++|+..+..+.+.|+++.++.|.++++++|. +...++|+++.++++ ++..++++++
T Consensus 293 ~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 293 DGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp --------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHh
Confidence 58999999999999988766558899999986 456678888877754 4445555555
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-22 Score=205.97 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=113.8
Q ss_pred CeEEEEeEEEEe----CCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECCEeCCCCCHHHH
Q 022337 62 PKFRVRELRKES----DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 62 ~~l~~~~l~~~y----~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g~~i~~~~~~~~ 136 (298)
+.+.+++...-. .+++.+++|+||+ ++|++++|+||||||||||||+|+|+..+ +.|. .+.. .
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~ 643 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----Q 643 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----S
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----h
Confidence 457777654211 0345799999999 99999999999999999999999997432 2221 1111 1
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+..+++++| +|.. ++.||+..+ .+++|+++++ ++.+...+.+|++
T Consensus 644 ~~~i~~~~~---i~~~~~~~d~l~~~------------------------------~stf~~e~~~-~~~il~~a~~psL 689 (800)
T 1wb9_A 644 KVEIGPIDR---IFTRVGAADDLASG------------------------------RSTFMVEMTE-TANILHNATEYSL 689 (800)
T ss_dssp EEEECCCCE---EEEEEC-----------------------------------------CHHHHHH-HHHHHHHCCTTEE
T ss_pred cccceeHHH---HHhhCCHHHHHHhh------------------------------hhhhhHHHHH-HHHHHHhccCCCE
Confidence 234566554 3332 444444221 1245666654 4445556899999
Q ss_pred EEEeCcCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 216 LLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~-~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+|||||++|+|+.....+ .+++..+.++.|.++|++||+.+.+ .+||++..+.+|++....
T Consensus 690 lLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 690 VLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDALE 751 (800)
T ss_dssp EEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEEEE
T ss_pred EEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEEEE
Confidence 999999999999877775 6778887654589999999999876 589988777777765543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-21 Score=175.20 Aligned_cols=154 Identities=15% Similarity=0.178 Sum_probs=110.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhH-hCccc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR-YGPQL 164 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~-~~~~~ 164 (298)
-+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..+... ..+...+. ++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 378999999999999999999999998664 5666 33544311 2457787665432 12322222 221
Q ss_pred cCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC--CCCHHHH---HHHHHHHHH
Q 022337 165 RGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS--ALDPIST---QNIEDVLVK 239 (298)
Q Consensus 165 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts--~LD~~~~---~~~~~~l~~ 239 (298)
........++++.+++. +..++++..||+||+|++ ++++.+|+++++||||+ ++|+... ..+++.|++
T Consensus 93 ---~~~~~~~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~ 165 (279)
T 1nlf_A 93 ---HLSAEERQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA 165 (279)
T ss_dssp ---TSCHHHHHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred ---hcChhhhhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence 12234466678888886 456788999999998865 68889999999999999 9998544 888899999
Q ss_pred HHhcCCcEEEEEccCHHHHH
Q 022337 240 LKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 240 l~~~~g~tii~itHd~~~~~ 259 (298)
++++.|+|||+++|+.....
T Consensus 166 l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 166 IAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHCCEEEEEEEC-----
T ss_pred HHHHcCCEEEEEecCCCccc
Confidence 87666999999999987653
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-21 Score=182.06 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=99.7
Q ss_pred eEEEEeCC-CCcceeeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhc
Q 022337 68 ELRKESDD-GAPILKGVNM-------EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 68 ~l~~~y~~-~~~vL~~isl-------~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~ 138 (298)
+++++|.. ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ .|.|...+.++ ++. .+.
T Consensus 93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~~ 168 (356)
T 3jvv_A 93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HES 168 (356)
T ss_dssp EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CCC
T ss_pred EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hhc
Confidence 45555422 2356777776 67899999999999999999999999999997 56665443332 221 123
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
..++++|....... ++..+ +|||||.++|++|++
T Consensus 169 ~~~~v~q~~~~~~~------------------------------------------~~~~~----~La~aL~~~Pdvill 202 (356)
T 3jvv_A 169 KKCLVNQREVHRDT------------------------------------------LGFSE----ALRSALREDPDIILV 202 (356)
T ss_dssp SSSEEEEEEBTTTB------------------------------------------SCHHH----HHHHHTTSCCSEEEE
T ss_pred cccceeeeeecccc------------------------------------------CCHHH----HHHHHhhhCcCEEec
Confidence 34555553211100 00000 999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
|||| |+...+ .+.+.++ .|.|+++++|+.+.+ ..|||++.|..|
T Consensus 203 DEp~---d~e~~~----~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 203 GEMR---DLETIR----LALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp SCCC---SHHHHH----HHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred CCCC---CHHHHH----HHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 9999 665544 3334444 399999999999987 679998877543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-22 Score=189.37 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=100.1
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.++.++||++.|+ ++.+++++||+| +|+||||||||||+++|+|+..|+.| .+|..+...+ ...+..++
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEE
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEE
Confidence 4689999999994 578999999998 99999999999999999999987666 2333222111 11135689
Q ss_pred EEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC---eEE
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE---VLL 217 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~---ill 217 (298)
+++|++.++. .|+.||+.++...... .....+.+.++ ..++.+++||++||||++.+|+ +|+
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~~~~~-~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ 144 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDAVDNS-NCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCLY 144 (418)
T ss_dssp CC------CEEEEEEECC------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEEE
T ss_pred EEEecCCcccceeeeechhhhhhccch-hhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEEE
Confidence 9999988775 5999999876432110 00011111111 1355677889999999999999 999
Q ss_pred EeCcC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHH
Q 022337 218 LDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 218 LDEPt-s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~ 257 (298)
+|||| ++||+... ++++++.. +.++|+|.|..+.
T Consensus 145 ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK~Dl 179 (418)
T 2qag_C 145 FIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAKADT 179 (418)
T ss_dssp ECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEESTTS
T ss_pred EecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEcccC
Confidence 99999 69999863 34455543 6788888877653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=156.78 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=104.3
Q ss_pred CcceeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 77 APILKGVNM-EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 77 ~~vL~~isl-~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
.+.|+.+.. -+++|++++|+||||||||||++.+++ .+..+.++++. +..+.+..+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~--------------------~~~~~~~~~~ 63 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT--------------------EGGFSPERLV 63 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES--------------------SCCCCHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC--------------------CCCCCHHHHH
Confidence 456777765 799999999999999999999999999 33333333332 2211111222
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH--HHHHHHHHHHcCC-CCeEEEeCcCCCCCHHH---
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ--AQRVALARTLANE-PEVLLLDEPTSALDPIS--- 229 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--kQRv~iAral~~~-p~illLDEPts~LD~~~--- 229 (298)
+.... .+. ..+ ++++.+ .+.++|+++ +|+++.+++++.+ |+++++||||+.+|+..
T Consensus 64 ~~~~~----~~~--~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~ 125 (220)
T 2cvh_A 64 QMAET----RGL--NPE---EALSRF---------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRS 125 (220)
T ss_dssp HHHHT----TTC--CHH---HHHHHE---------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSS
T ss_pred HHHHh----cCC--ChH---HHhhcE---------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchH
Confidence 21110 011 111 122222 122445553 6788999999986 99999999999999743
Q ss_pred -----HHHHHHHHHHHHhcCCcEEEEEccCHH-------------HHHhhcCEEEEEeCC
Q 022337 230 -----TQNIEDVLVKLKKKHGMTIVMVSHSIK-------------QIQRIADVVCLLVNG 271 (298)
Q Consensus 230 -----~~~~~~~l~~l~~~~g~tii~itHd~~-------------~~~~~~d~v~vl~~G 271 (298)
..++++.|++++++.|.|+|+++|... .+..+||++++|+..
T Consensus 126 ~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 126 GLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 245666688887767999999999865 577899999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-20 Score=165.23 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=100.4
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cH----HHH
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TV----VDN 157 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv----~en 157 (298)
-..++|++++|+||||||||||+|+|+|+++| ..|.|.+.+++... ..+..++|+||++.+|+. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 68999998876532 124679999998877653 55 455
Q ss_pred hHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHH
Q 022337 158 IRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237 (298)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l 237 (298)
+.+....++. ..+.+. .++..++++||| ||+.++..+.+.+
T Consensus 87 ~~~~~~~yg~--~~~~v~--------------------------------~~l~~G~illLD-----LD~~~~~~i~~~l 127 (219)
T 1s96_A 87 AEVFGNYYGT--SREAIE--------------------------------QVLATGVDVFLD-----IDWQGAQQIRQKM 127 (219)
T ss_dssp EEETTEEEEE--EHHHHH--------------------------------HHHTTTCEEEEE-----CCHHHHHHHHHHC
T ss_pred HHHHhccCCC--CHHHHH--------------------------------HHHhcCCeEEEE-----ECHHHHHHHHHHc
Confidence 4432221111 112222 223347999999 9999999999887
Q ss_pred HHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 238 VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 238 ~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
. .+.||+++||+++.+.. |+ +..| .++++++
T Consensus 128 ~-----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i 158 (219)
T 1s96_A 128 P-----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVI 158 (219)
T ss_dssp T-----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHH
T ss_pred c-----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHH
Confidence 5 28999999999998765 43 5667 4566655
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-21 Score=182.03 Aligned_cols=177 Identities=16% Similarity=0.188 Sum_probs=116.3
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVI--MGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~--~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
+++++ ++.|+ +.+ |+++||++++|++ ++|+||||||||||+|+|+|+. ++|.++........++.++
T Consensus 17 l~~~~-~~~y~-~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~ 85 (427)
T 2qag_B 17 VPLAG-HVGFD-SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNT 85 (427)
T ss_dssp CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEE
T ss_pred EEEee-EEEEC-Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEE
Confidence 56666 78884 456 9999999999999 9999999999999999999984 3454443322222345799
Q ss_pred EEeCCCCCCc-ccHHHHhHhCccccC---CCc----cHHHHHHHHHHc-CCCch---hhcCC-----------CCCCChh
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLRG---KKL----TENEVYKLLSLA-DLDSS---FLNKT-----------GGEISVG 198 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~~---~~~----~~~~~~~~l~~~-~l~~~---~~~~~-----------~~~LSgG 198 (298)
|++|++.+++ .|+.||+.++..... ... ....+.+.++.. ++... ..+.+ ...|+-.
T Consensus 86 ~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~ 165 (427)
T 2qag_B 86 YDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL 165 (427)
T ss_dssp EEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH
T ss_pred EEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH
Confidence 9999998876 599999988753210 000 012344455544 43210 11111 1245655
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHH-HHhcCCcEEEEEccCH
Q 022337 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK-LKKKHGMTIVMVSHSI 255 (298)
Q Consensus 199 qkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~-l~~~~g~tii~itHd~ 255 (298)
. +.++++|..+++++++|||+..|.+.....+.+.+++ +. ..|.+|+.+|.|-
T Consensus 166 D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~d 219 (427)
T 2qag_B 166 D---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTDD 219 (427)
T ss_dssp H---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC---
T ss_pred H---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCCc
Confidence 5 7999999999999999999999999999999999987 54 4699999999763
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=148.34 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=71.4
Q ss_pred hcCCCCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 188 LNKTGGEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iAral~----~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
..+.+..||||||||++|||+|+ .+|+++||||||++||+.++..+.+.|+++.+ +.++|+|||+.... .+||
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~-~~ad 134 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMM-ANAD 134 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHH-TTCS
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHH-HhCC
Confidence 34567899999999999999997 45799999999999999999999999999864 56899999998755 6899
Q ss_pred EEEEE--eCCEE
Q 022337 264 VVCLL--VNGEI 273 (298)
Q Consensus 264 ~v~vl--~~G~i 273 (298)
+++.+ .+|..
T Consensus 135 ~i~~v~~~~g~s 146 (173)
T 3kta_B 135 KIIGVSMRDGVS 146 (173)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCEE
Confidence 99855 47753
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-21 Score=169.57 Aligned_cols=144 Identities=21% Similarity=0.211 Sum_probs=105.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHh---cCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHhCcc-
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALN---RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQ- 163 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~---gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~- 163 (298)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ......+++++|++.+++. ++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988876532 1233456677888877765 89999875321
Q ss_pred -------ccCCCccHHHHHHHHHHcCCC-------------chhhcCCCCCCChhHHHHHHHHHHH-cCCCCeEEEe---
Q 022337 164 -------LRGKKLTENEVYKLLSLADLD-------------SSFLNKTGGEISVGQAQRVALARTL-ANEPEVLLLD--- 219 (298)
Q Consensus 164 -------~~~~~~~~~~~~~~l~~~~l~-------------~~~~~~~~~~LSgGqkQRv~iAral-~~~p~illLD--- 219 (298)
..+......++..+......+ ..+.++++.+||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 112222222333332222211 2345677889999 66 788 9999999999
Q ss_pred -CcCCCCCHHHHHHHHHHHHHHHhc
Q 022337 220 -EPTSALDPISTQNIEDVLVKLKKK 243 (298)
Q Consensus 220 -EPts~LD~~~~~~~~~~l~~l~~~ 243 (298)
|||++||+.+++.+.+.+.++.++
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999988653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-20 Score=177.60 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=113.2
Q ss_pred EEEeEEEE---eCC-CCcce---------eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC
Q 022337 65 RVRELRKE---SDD-GAPIL---------KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL 131 (298)
Q Consensus 65 ~~~~l~~~---y~~-~~~vL---------~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~ 131 (298)
++++++|. |++ +.++| +++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.. ++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 66777776 642 12355 99999999999999999999999999999999999999999999742 33
Q ss_pred CHHHHhcceEEEe-CCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 132 DVLSLRRKVGMLF-QIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 132 ~~~~~~~~ig~v~-Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
.....++.+++++ |++.+ + ++++..+|..|++++.
T Consensus 215 ~~~~~~~~v~~v~~q~~~~--------------------------------~------------~~~~~t~~~~i~~~l~ 250 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKE--------------------------------E------------ENAPVTAATLLRSCLR 250 (361)
T ss_dssp CCTTCSSEEEEECC------------------------------------------------------CCHHHHHHHHTT
T ss_pred CccccCCEEEEeecCcccc--------------------------------c------------cccccCHHHHHHHHHh
Confidence 3333567789998 65421 0 1233357888999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
.+|+.+++|||.. .+..+.|..+... ..|++.++|+.+ +...+||+..+..|.
T Consensus 251 ~~pd~~l~~e~r~-------~~~~~~l~~l~~g-~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 251 MKPTRILLAELRG-------GEAYDFINVAASG-HGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp SCCSEEEESCCCS-------THHHHHHHHHHTT-CCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred cCCCEEEEcCchH-------HHHHHHHHHHhcC-CCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 9999999999986 3455667666432 457899999965 667789988887763
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-21 Score=167.22 Aligned_cols=149 Identities=21% Similarity=0.179 Sum_probs=99.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
.+++|++++|+||||||||||+|+|+|. |+.|.|.++|.++.... ..++.++|++|++. ...++.+|+.+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78999999987653211 11234678887654 2348889887642110
Q ss_pred ---CCCccHHHHHHHHHHcCCCchhh--cCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHH
Q 022337 166 ---GKKLTENEVYKLLSLADLDSSFL--NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240 (298)
Q Consensus 166 ---~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l 240 (298)
+... .++.++...++. .+. +..+..+|+|++||+++||++.++|+++ +|+...+.+.+.+..+
T Consensus 80 ~~~~~~~---~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 80 AKEGYFV---ILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHTSCEE---EECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred hccCCeE---EEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 0000 000011112221 122 3455689999999999999999999876 6888888888887766
Q ss_pred HhcCCcEEEEEc
Q 022337 241 KKKHGMTIVMVS 252 (298)
Q Consensus 241 ~~~~g~tii~it 252 (298)
.+ .+..+|.++
T Consensus 148 ~~-~~~~~i~t~ 158 (191)
T 1zp6_A 148 GA-FEHHVLPVS 158 (191)
T ss_dssp GG-GGGGEEECT
T ss_pred Cc-ccccEEECC
Confidence 43 233344444
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-23 Score=179.48 Aligned_cols=172 Identities=14% Similarity=0.051 Sum_probs=114.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCccccCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKK 168 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~ 168 (298)
|++++|+||||||||||+|+|++ |.+|.++++|.++... ...++++|....++ .++++|+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLTVNFLLA 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999998 7789999988665321 24577777664333 38888886532110000
Q ss_pred ccHHHHHHHHHHcCCCchhhcCCCCCC--ChhHHHHHHHHH------HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHH
Q 022337 169 LTENEVYKLLSLADLDSSFLNKTGGEI--SVGQAQRVALAR------TLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240 (298)
Q Consensus 169 ~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGqkQRv~iAr------al~~~p~illLDEPts~LD~~~~~~~~~~l~~l 240 (298)
.. ..+++.+.. .... +...++ |+||+|++.++. +++.+|+...+|+ ++|+...+. ++.+.++
T Consensus 73 ~~----~~ild~~~~-~~~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~ 142 (189)
T 2bdt_A 73 QN----DVVLDYIAF-PDEA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK 142 (189)
T ss_dssp TC----EEEEESCCC-HHHH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT
T ss_pred CC----cEEEeeccC-HHHH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc
Confidence 00 000111111 0001 111234 889999988888 9999999888884 899988888 8888887
Q ss_pred HhcCCcEEEEEccC-HHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 241 KKKHGMTIVMVSHS-IKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 241 ~~~~g~tii~itHd-~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
.+ .+.++|.+||. ++.+.++||+|+ ++|+++..|+++-+.
T Consensus 143 ~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 143 GI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp TC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred CC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 54 47899999999 999999999998 999999999877553
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.1e-19 Score=154.05 Aligned_cols=148 Identities=18% Similarity=0.306 Sum_probs=91.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhc--CCCC-----CccEEEECCEeCCCC-CHHHHhcceEEEeCCCCCCcccHHHH
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNR--LWEP-----PSGTVFLDGRDITDL-DVLSLRRKVGMLFQIPALFEGTVVDN 157 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~g--l~~p-----~~G~I~i~g~~i~~~-~~~~~~~~ig~v~Q~~~l~~~tv~en 157 (298)
-|++|++++|+||||||||||++.|++ +.+| ..|.+++++.+.... ....+.+.+++.+| .+.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS-------DVLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-------HHhhC
Confidence 489999999999999999999999999 6665 578888887652110 01122333444333 23444
Q ss_pred hHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH-HHHHHHHHc--CCCCeEEEeCcCCCCCHH------
Q 022337 158 IRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ-RVALARTLA--NEPEVLLLDEPTSALDPI------ 228 (298)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ-Rv~iAral~--~~p~illLDEPts~LD~~------ 228 (298)
+.+.. ..+..+.. .+.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~ 141 (243)
T 1n0w_A 93 VAYAR-------------------------------AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGE 141 (243)
T ss_dssp EEEEE-------------------------------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------C
T ss_pred eEEEe-------------------------------cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCcc
Confidence 33211 11222211 111122222 689999999999999985
Q ss_pred -H-----HHHHHHHHHHHHhcCCcEEEEEccCHHHHHh-------------------hcCEEEEEeCC
Q 022337 229 -S-----TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR-------------------IADVVCLLVNG 271 (298)
Q Consensus 229 -~-----~~~~~~~l~~l~~~~g~tii~itHd~~~~~~-------------------~~d~v~vl~~G 271 (298)
. ...++..|++++++.|+|||+++|....... +||++++|+.|
T Consensus 142 ~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 142 LSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 3456667777776679999999997765443 79999999865
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-19 Score=166.24 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=117.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH----HHhc--ceEEEeCCCCCCcc-cHHHHh
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL----SLRR--KVGMLFQIPALFEG-TVVDNI 158 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~----~~~~--~ig~v~Q~~~l~~~-tv~eni 158 (298)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.+.... .+++ .+.+++|...+++. ++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4478999999999999999999999999999999999999998765532 2233 35699999988875 999999
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHH
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~ 238 (298)
.++... +.+. -+++..|.. +.......+|| .++|++..++.+++||.++. ..+.+.++
T Consensus 205 ~~~~~~-~~d~------vliDtaG~~-~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~~~~~ 262 (328)
T 3e70_C 205 QHAKAR-GIDV------VLIDTAGRS-ETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIVEQAR 262 (328)
T ss_dssp HHHHHH-TCSE------EEEEECCSC-CTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHHHHHH
T ss_pred HHHHhc-cchh------hHHhhccch-hHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHHHHHH
Confidence 875321 0000 012223432 12222233333 48999998888888886654 35555666
Q ss_pred HHHhcCCcEEEEEccCH---------HHHHhhcCEEEEEeCCEEE
Q 022337 239 KLKKKHGMTIVMVSHSI---------KQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 239 ~l~~~~g~tii~itHd~---------~~~~~~~d~v~vl~~G~i~ 274 (298)
.+.+..+.|+|++||.- +.+....-.|.++..|+-+
T Consensus 263 ~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 263 QFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 66655689999999953 2344555678888888755
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-22 Score=185.09 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=122.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHHHhc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----VLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~----~~~~~~ 138 (298)
+++++++++.|. +..+|+++||++++|++++|+||||||||||+++|+|++.|++|+|.+.|.++.... ....++
T Consensus 29 ~ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 29 LAESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HHTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HHeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 477888888884 457999999999999999999999999999999999999999999999998874321 112456
Q ss_pred ceEEEeCCCCCCcc-------------cHHHHhH-----------------------------hCccccCCC-ccH-H--
Q 022337 139 KVGMLFQIPALFEG-------------TVVDNIR-----------------------------YGPQLRGKK-LTE-N-- 172 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-------------tv~eni~-----------------------------~~~~~~~~~-~~~-~-- 172 (298)
++++++|++.+|.. ++.|.+. +........ .+. +
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 79999999987642 1233221 000000000 000 0
Q ss_pred --HHHHHHHHcCCCchhhcC-CCCCCChhHHHHHHHHHHHcC------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh
Q 022337 173 --EVYKLLSLADLDSSFLNK-TGGEISVGQAQRVALARTLAN------EPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 173 --~~~~~l~~~~l~~~~~~~-~~~~LSgGqkQRv~iAral~~------~p~illLDEPts~LD~~~~~~~~~~l~~l~~ 242 (298)
.+.+....+.+. ..|. ...++|+|++|++..|++++. +|+++. +|++|+....++++.|.++.+
T Consensus 188 ~~~i~~~~~ivvlN--K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 188 KKGIFELADMIAVN--KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CTTHHHHCSEEEEE--CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhccccEEEEE--chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 011111122221 2232 234689999999999999997 688876 999999999999999988754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-19 Score=177.23 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=109.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHH--HhcceEEEeCCCCCCcc-
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----VLS--LRRKVGMLFQIPALFEG- 152 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~----~~~--~~~~ig~v~Q~~~l~~~- 152 (298)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+..+.. ... .|++++|++|++.+++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887765421 112 35679999999887764
Q ss_pred cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc-CCC-CeEEEeCcCCCCCHHHH
Q 022337 153 TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA-NEP-EVLLLDEPTSALDPIST 230 (298)
Q Consensus 153 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~-~~p-~illLDEPts~LD~~~~ 230 (298)
++++|+.++.. .+.+. -+++..|... .......+| +|++.++|++. ..| ++||..+|++|.|..
T Consensus 363 tV~e~l~~a~~-~~~Dv------VLIDTaGrl~-~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al-- 428 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNIDV------LIADTAGRLQ-NKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-- 428 (503)
T ss_dssp HHHHHHHHHHH-TTCSE------EEECCCCSCC-CHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--
T ss_pred HHHHHHHHHHh-cCCCE------EEEeCCCccc-hhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--
Confidence 99999987632 11110 0123333321 111111223 48899999875 446 466666688886554
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcc
Q 022337 231 QNIEDVLVKLKKKHGMTIVMVSH 253 (298)
Q Consensus 231 ~~~~~~l~~l~~~~g~tii~itH 253 (298)
+.++.+.+..+.|.+++||
T Consensus 429 ----~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 429 ----SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp ----HHHHHHHHHTCCSEEEEEC
T ss_pred ----HHHHHHHhhcCCCEEEEEc
Confidence 3344454445899999999
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-22 Score=186.16 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=110.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC--------CCCccEEEECCEeCCCCC---------------HHHHhcceEEE---e
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW--------EPPSGTVFLDGRDITDLD---------------VLSLRRKVGML---F 144 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~--------~p~~G~I~i~g~~i~~~~---------------~~~~~~~ig~v---~ 144 (298)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999886542 22455668887 6
Q ss_pred CCCCCC-cccHHHHhHhCccc---cCCCccHH-----HHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 145 QIPALF-EGTVVDNIRYGPQL---RGKKLTEN-----EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 145 Q~~~l~-~~tv~eni~~~~~~---~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
|++.++ ..++.||..++... .......+ ++..++..+++. ++.++.. +||+||+||+..+++++.+|++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~-~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAV-HADEQMN-QFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETT-THHHHHH-HCHHHHHHHHTCSEEEEECTTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHH-HHHHHHh-hchHHHHHHHhCCEEEEECccc
Confidence 877653 45888888765210 00000000 011122334443 2333333 7999999999999999999998
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~ 261 (298)
+ ||| +.+.+.|+++. .+.||+++||+...+..+
T Consensus 163 ~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 163 A--GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp C--SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGG
T ss_pred C--CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHH
Confidence 7 999 78888888874 389999999965444433
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-19 Score=171.43 Aligned_cols=127 Identities=19% Similarity=0.209 Sum_probs=96.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHH
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDN 157 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~en 157 (298)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..+++++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEE----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeee----------
Confidence 566655 7899999999999999999999999999998 899988776553 2 2456788888841
Q ss_pred hHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHH
Q 022337 158 IRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237 (298)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l 237 (298)
+|++ +..| +.+|+++|..+|+++++|||+ |+.... .++
T Consensus 191 -----------------------~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l 228 (372)
T 2ewv_A 191 -----------------------VGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TAL 228 (372)
T ss_dssp -----------------------BTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHH
T ss_pred -----------------------cCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHH
Confidence 2221 1233 469999999999999999999 776543 344
Q ss_pred HHHHhcCCcEEEEEccCHHHHHhhcCEEE
Q 022337 238 VKLKKKHGMTIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 238 ~~l~~~~g~tii~itHd~~~~~~~~d~v~ 266 (298)
+.. . .|.+++.++|+.+ +...|||++
T Consensus 229 ~~~-~-~g~~vi~t~H~~~-~~~~~~rl~ 254 (372)
T 2ewv_A 229 RAA-E-TGHLVFGTLHTNT-AIDTIHRIV 254 (372)
T ss_dssp HHH-T-TTCEEEECCCCCS-HHHHHHHHH
T ss_pred HHH-h-cCCEEEEEECcch-HHHHHHHHH
Confidence 433 3 4889999999966 566777753
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-20 Score=158.56 Aligned_cols=135 Identities=17% Similarity=0.232 Sum_probs=87.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCCC---HHHHh-cceE----EEeCCCCCCcccHHHHhH
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDLD---VLSLR-RKVG----MLFQIPALFEGTVVDNIR 159 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~~---~~~~~-~~ig----~v~Q~~~l~~~tv~eni~ 159 (298)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++.+++ ...+| +.+| +++|++.+|-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~------ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR------ 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec------
Confidence 589999999999999999999999998 899999999876554 34555 4677 888887655100
Q ss_pred hCccccCCCccHH--HHHHHHHH-c-CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE-------EEeCcCC---CC
Q 022337 160 YGPQLRGKKLTEN--EVYKLLSL-A-DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL-------LLDEPTS---AL 225 (298)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~l~~-~-~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il-------lLDEPts---~L 225 (298)
. ..+. .+.+.++. + +++ ....+ .|||||+||++||||++.+|++. .-|.|.. -+
T Consensus 77 ------~--~~~~~a~l~~~i~~~l~g~d-t~i~E---glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f 144 (171)
T 2f1r_A 77 ------V--SEEEGNDLDWIYERYLSDYD-LVITE---GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWF 144 (171)
T ss_dssp ------C--CHHHHTCHHHHHHHHTTTCS-EEEEE---SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEE
T ss_pred ------C--ChhhhhCHHHHHHhhCCCCC-EEEEC---CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCccc
Confidence 0 0111 23444444 3 454 22222 49999999999999999999873 2355532 23
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 022337 226 DPISTQNIEDVLVKLKKK 243 (298)
Q Consensus 226 D~~~~~~~~~~l~~l~~~ 243 (298)
|....+.+.+++.+...+
T Consensus 145 ~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 145 RRDEVERIAEFILSLLRE 162 (171)
T ss_dssp CTTCHHHHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHHHHhc
Confidence 444567777777666555
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-20 Score=157.35 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=73.5
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeC
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q 145 (298)
.+++++.|+ ++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++... ...+ .+++|
T Consensus 10 ~~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 10 DEFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp SHHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred CHHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 345667773 457999999999999999999999999999999999999 9999999999877421 1111 27999
Q ss_pred CCCCCcccHHHHhHh-Cc
Q 022337 146 IPALFEGTVVDNIRY-GP 162 (298)
Q Consensus 146 ~~~l~~~tv~eni~~-~~ 162 (298)
++.+|..|+.||+.+ +.
T Consensus 83 ~~~l~~ltv~e~l~~~g~ 100 (158)
T 1htw_A 83 HFDLYRLADPEELEFMGI 100 (158)
T ss_dssp EEECTTCSCTTHHHHSTH
T ss_pred ccccccCCcHHHHHHcCh
Confidence 998886699999954 53
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-20 Score=162.99 Aligned_cols=154 Identities=19% Similarity=0.280 Sum_probs=104.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC-------------CCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccH
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE-------------PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTV 154 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv 154 (298)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ .|+..++..++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5799999999999999999999999886 77887 578777666666666654 57666666677
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH----HHHHHH-HHcCCCCeEEEeCcCCCCCHHH
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ----RVALAR-TLANEPEVLLLDEPTSALDPIS 229 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ----Rv~iAr-al~~~p~illLDEPts~LD~~~ 229 (298)
.+|+ ++. ..+.+.++++..... +.+.. + .|-++ ++ .|| +++.+|++++|||||+++|..+
T Consensus 77 ~~n~-~g~-------~~~~i~~~~~~~~~~--~~~~~---~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~~~ 141 (198)
T 1lvg_A 77 SGNL-YGT-------SKEAVRAVQAMNRIC--VLDVD---L-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNTET 141 (198)
T ss_dssp TTEE-EEE-------EHHHHHHHHHTTCEE--EEECC---H-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTCSC
T ss_pred cCcc-CCC-------CHHHHHHHHHcCCcE--EEECC---H-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 6666 431 345566666542211 11100 0 11111 12 566 7888999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 230 ~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
.+.+.+.|.+..++ +.++|. . ..+|+|+++++
T Consensus 142 e~~i~~~l~~~~~~-----~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 142 EESLAKRLAAARTD-----MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHHHH-----TTGGGS--T--TTCSEEEECSS
T ss_pred HHHHHHHHHHHHHH-----HHHhhc--c--CCceEEEECCC
Confidence 99999999887653 245672 2 46899888754
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-17 Score=156.76 Aligned_cols=137 Identities=18% Similarity=0.104 Sum_probs=95.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCccEEEEC-CEeCCCCCHHHHhcceEEEeCCCCCCcc-cH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPSGTVFLD-GRDITDLDVLSLRRKVGMLFQIPALFEG-TV 154 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p~~G~I~i~-g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv 154 (298)
.-++++++. .+|++++|+||||||||||+|+|+|+.. |+.|+|.++ |+... ...++.+++++|++.+++. ++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357788875 4899999999999999999999999999 999999987 76542 1235679999999888765 88
Q ss_pred HHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHH
Q 022337 155 VDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 232 (298)
Q Consensus 155 ~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~ 232 (298)
+++ +.. +... ..+.+.++++.+++. .+.++.+.+|| ||+||++||+++ +++.-.+.
T Consensus 279 ~e~---~l~--~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gl---------------i~~~R~~~ 336 (358)
T 2rcn_A 279 REF---GLW--HLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGA---------------IAETRFEN 336 (358)
T ss_dssp HTC---CCC--CCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTS---------------SCHHHHHH
T ss_pred HHh---hhc--CCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcC---------------CCHHHHHH
Confidence 884 221 2221 123456788889986 57899999999 999999999875 34444455
Q ss_pred HHHHHHHHH
Q 022337 233 IEDVLVKLK 241 (298)
Q Consensus 233 ~~~~l~~l~ 241 (298)
..+++.++.
T Consensus 337 y~~l~~e~~ 345 (358)
T 2rcn_A 337 YHRILESMA 345 (358)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555556553
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-17 Score=154.95 Aligned_cols=150 Identities=14% Similarity=0.259 Sum_probs=99.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHH--HHhcCCCCCcc-----EEEECCEeCCC-CCHHHHhcceEEEeCCCCCCcccHHHH
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLR--ALNRLWEPPSG-----TVFLDGRDITD-LDVLSLRRKVGMLFQIPALFEGTVVDN 157 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk--~l~gl~~p~~G-----~I~i~g~~i~~-~~~~~~~~~ig~v~Q~~~l~~~tv~en 157 (298)
-|++|++++|+||||||||||++ ++.++.+|+.| .+++++++... .....+++++|+.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 58999999999999999999999 45677776544 88888876321 111123344554433 56666
Q ss_pred hHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH--cCCCCeEEEeCcCCCCCHHHH-----
Q 022337 158 IRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL--ANEPEVLLLDEPTSALDPIST----- 230 (298)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral--~~~p~illLDEPts~LD~~~~----- 230 (298)
+.+.... ..+.. .+.+.-++.+ ..+|+++++|||++.+|+...
T Consensus 247 i~~~~~~-----~~~~~-------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l 296 (400)
T 3lda_A 247 VAYARAY-----NADHQ-------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGEL 296 (400)
T ss_dssp EEEEECC-----SHHHH-------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCH
T ss_pred EEEeccC-----ChHHH-------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccch
Confidence 6543210 11111 1111112222 257999999999999997543
Q ss_pred -------HHHHHHHHHHHhcCCcEEEEEccCH-------------------HHHHhhcCEEEEEeCCE
Q 022337 231 -------QNIEDVLVKLKKKHGMTIVMVSHSI-------------------KQIQRIADVVCLLVNGE 272 (298)
Q Consensus 231 -------~~~~~~l~~l~~~~g~tii~itHd~-------------------~~~~~~~d~v~vl~~G~ 272 (298)
.++++.|++++++.|.|||+|+|.. ..+..+||.+++|++++
T Consensus 297 ~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 297 SARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 6788889999887899999999982 23577899999998763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-18 Score=157.23 Aligned_cols=120 Identities=19% Similarity=0.148 Sum_probs=87.7
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE---CCEeCCCCCHHHHh-cceEEEeCCCCCC-----c-ccH
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL---DGRDITDLDVLSLR-RKVGMLFQIPALF-----E-GTV 154 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i---~g~~i~~~~~~~~~-~~ig~v~Q~~~l~-----~-~tv 154 (298)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++.... ...+ +.+||++|+|.+. + .|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 345679999999999999999999999 99999999999 998876543 2222 3689999999653 4 488
Q ss_pred HHHh--HhCc------cccC---CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 155 VDNI--RYGP------QLRG---KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 155 ~eni--~~~~------~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
||+ .|+. .+++ .......+.++++.++|.+...++++..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 4541 1222 12234568999999999744778899999999999999987
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-20 Score=176.38 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=103.4
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC-C---HHHHhcc
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL-D---VLSLRRK 139 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~-~---~~~~~~~ 139 (298)
++++++++.|. ...+|+++ +. .+|++++|+||||||||||+++|+|+++|++|+|.+.|.++... + ...++++
T Consensus 144 ~~l~~Lg~~~~-~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 144 LDLHSLGMTAH-NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCGGGSCCCHH-HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCHHHcCCCHH-HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 44555555542 33467777 53 89999999999999999999999999999999999998876321 1 1123445
Q ss_pred eEEEe---------CCCCCC--c-----ccHHHHhHhCcccc----C-CCccHHHHHHHHHHcCCCchhhcCCCCCCChh
Q 022337 140 VGMLF---------QIPALF--E-----GTVVDNIRYGPQLR----G-KKLTENEVYKLLSLADLDSSFLNKTGGEISVG 198 (298)
Q Consensus 140 ig~v~---------Q~~~l~--~-----~tv~eni~~~~~~~----~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 198 (298)
+++.| |+|.++ . .|+.+++.++...+ . ...+...+.+.+..++++. .. .+.+||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~-~~--~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEP-FL--ISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCH-HH--HHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcH-HH--HHHHHHHH
Confidence 66666 998752 1 38999987642110 0 0111233445677889863 32 67799999
Q ss_pred HHHHHHHHHHHcCCCCeEE
Q 022337 199 QAQRVALARTLANEPEVLL 217 (298)
Q Consensus 199 qkQRv~iAral~~~p~ill 217 (298)
|+|| |||+|+.+|++..
T Consensus 298 ~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEE--EEEEECTTTCEEE
T ss_pred HHHH--hhhhhcCCCCccC
Confidence 9999 9999999999876
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=148.35 Aligned_cols=77 Identities=27% Similarity=0.421 Sum_probs=68.8
Q ss_pred CCCCCCChhHHHHH------HHHHHHcCC-CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 190 KTGGEISVGQAQRV------ALARTLANE-PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 190 ~~~~~LSgGqkQRv------~iAral~~~-p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
.++..|||||+||+ ++||+++.+ |++|||||||++||+..+..+.+.|.++.+ +.+||+|||+++ +..+|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~~-~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHRE-LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCGG-GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChHH-HHhhC
Confidence 45678999999988 567999999 999999999999999999999999998743 468999999987 56899
Q ss_pred CEEEEEe
Q 022337 263 DVVCLLV 269 (298)
Q Consensus 263 d~v~vl~ 269 (298)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-20 Score=172.62 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=121.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHhcCC----CCCccEEEECCEeCCCCC
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKG-------VIMGIIGPSGSGKSTLLRALNRLW----EPPSGTVFLDGRDITDLD 132 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~G-------e~~~iiG~nGsGKSTLlk~l~gl~----~p~~G~I~i~g~~i~~~~ 132 (298)
++.++++..| ++..+++++++.+++| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++...
T Consensus 19 lr~~~l~~~~-g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~- 96 (334)
T 1in4_A 19 LRPKSLDEFI-GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI- 96 (334)
T ss_dssp TSCSSGGGCC-SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH-
T ss_pred cCCccHHHcc-CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH-
Confidence 4555677666 4567999999999877 899999999999999999999998 67788777666554211
Q ss_pred HHHH-hcceEEEeCCCCCCcccHHHHhHhCccccCC------CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 133 VLSL-RRKVGMLFQIPALFEGTVVDNIRYGPQLRGK------KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 133 ~~~~-~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
...+ +..|.+++|...+.+ ++.|++.......+. ....+.+...+..+++. . ...++..||+|++||+.+
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li-~-at~~~~~Ls~~l~sR~~l 173 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV-G-ATTRSGLLSSPLRSRFGI 173 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEE-E-EESCGGGSCHHHHTTCSE
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE-E-ecCCcccCCHHHHHhcCc
Confidence 0112 356999999877765 788877533221111 11122344445555653 2 567788999999999865
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
+ .+||+.+.+++.++|++.++..+ ++|+.+.+..+|++
T Consensus 174 ~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 174 I----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp E----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred e----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 5 78999999999999998876544 47888888777765
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-17 Score=153.22 Aligned_cols=111 Identities=23% Similarity=0.159 Sum_probs=76.8
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE---CCEeCCCCCHHHHhcceEEEeCCCC-------------
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL---DGRDITDLDVLSLRRKVGMLFQIPA------------- 148 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i---~g~~i~~~~~~~~~~~ig~v~Q~~~------------- 148 (298)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.........+.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9998865432111246899999985
Q ss_pred ---CCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCCh
Q 022337 149 ---LFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197 (298)
Q Consensus 149 ---l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 197 (298)
+|+. |+ +|+.|+...+ ......++.++++.++|+.+..++++.+||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~-~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH-VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS-SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC-CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3553 77 8888763221 2233457899999999964677888988885
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-19 Score=172.96 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=113.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVD 156 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~e 156 (298)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.|.+-...+ -...++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHH
Confidence 4788999999999999999999999999999999999999999999886522221 1234666666543111 25555
Q ss_pred HhHhCcccc------CCCccHH---------------------HHHHHHHHc-----CCCchhh---c---CCCCCCChh
Q 022337 157 NIRYGPQLR------GKKLTEN---------------------EVYKLLSLA-----DLDSSFL---N---KTGGEISVG 198 (298)
Q Consensus 157 ni~~~~~~~------~~~~~~~---------------------~~~~~l~~~-----~l~~~~~---~---~~~~~LSgG 198 (298)
++...++.. +.-...+ .+.++++++ ++...+. + .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 554332211 0000000 111222222 2211111 1 123457999
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEE--EccCHHHHHhhcCE
Q 022337 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM--VSHSIKQIQRIADV 264 (298)
Q Consensus 199 qkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~--itHd~~~~~~~~d~ 264 (298)
|+||.++|. + | |+||||...+.+++.+.++.++ +.|+++ +||+++.+...|+.
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~-~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPK-EDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETT-TTEEEECSCCTHHHHHHHHHTS
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEccc-CCEEEEcccHHHHHHHHHHcCC
Confidence 999987651 1 7 9999999888888888877544 889885 99999999888853
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-17 Score=136.62 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=76.5
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcc
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ 163 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~ 163 (298)
||++++|+.++|+||||||||||++++++.+.|++|... .| .+..+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~---------~~~~~~~~~--- 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YF---------FDTKDLIFR--- 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CE---------EEHHHHHHH---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EE---------EEHHHHHHH---
Confidence 567788999999999999999999999998876665210 01 122222110
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC-CCCHHHHHHHHHHHHHHHh
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts-~LD~~~~~~~~~~l~~l~~ 242 (298)
+......-.. . -+...+.+|++|+||||++ ++|+..+..+.+++.+..+
T Consensus 82 ----------~~~~~~~~~~------------~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~ 131 (180)
T 3ec2_A 82 ----------LKHLMDEGKD------------T--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN 131 (180)
T ss_dssp ----------HHHHHHHTCC------------S--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHhcCchH------------H--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 1111110000 0 0112234899999999995 9999999999999988764
Q ss_pred cCCcEEEEEccCHH
Q 022337 243 KHGMTIVMVSHSIK 256 (298)
Q Consensus 243 ~~g~tii~itHd~~ 256 (298)
+ |+++|++||...
T Consensus 132 ~-~~~ii~tsn~~~ 144 (180)
T 3ec2_A 132 N-LKSTIITTNYSL 144 (180)
T ss_dssp T-TCEEEEECCCCS
T ss_pred c-CCCEEEEcCCCh
Confidence 4 899999999864
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-16 Score=145.00 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=78.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhc-CCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNR-LWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL 169 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~g-l~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 169 (298)
..+.|.||||+|||||+++|++ ++.|+.|.+.++|.++.... ..+..+++++|.+.+.- .....+..
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~- 104 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEI---------TPSDMGNN- 104 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEE---------CCC----C-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEe---------cHhhcCCc-
Confidence 3489999999999999999999 89999999999998764321 22567899998764311 00000111
Q ss_pred cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 022337 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249 (298)
Q Consensus 170 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii 249 (298)
....+.+.++.+.-... .+... +||| +..+|+++|+|||++ ||+.+...+.+.+.+..+ +.++|
T Consensus 105 ~~~~~~~~i~~~~~~~~-~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~--~~~~I 168 (354)
T 1sxj_E 105 DRIVIQELLKEVAQMEQ-VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK--NIRLI 168 (354)
T ss_dssp CHHHHHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT--TEEEE
T ss_pred chHHHHHHHHHHHHhcc-ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC--CCEEE
Confidence 11123333333221100 11111 5676 788999999999999 999999999999998743 78999
Q ss_pred EEccCHHH
Q 022337 250 MVSHSIKQ 257 (298)
Q Consensus 250 ~itHd~~~ 257 (298)
++||+++.
T Consensus 169 l~t~~~~~ 176 (354)
T 1sxj_E 169 MVCDSMSP 176 (354)
T ss_dssp EEESCSCS
T ss_pred EEeCCHHH
Confidence 99999753
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-17 Score=150.89 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=91.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCc-----
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGP----- 162 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~----- 162 (298)
+++.+++|+||+|||||||.+.|.+++.+. | . . ++.+.+|+|+..+++.+.++|+.++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 468899999999999999999999999763 2 0 1 34466669999888889999998752
Q ss_pred -cccCC--CccHHHHHHHHHHcCCC-------chhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH
Q 022337 163 -QLRGK--KLTENEVYKLLSLADLD-------SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 228 (298)
Q Consensus 163 -~~~~~--~~~~~~~~~~l~~~~l~-------~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~ 228 (298)
..++. ..+.+.+.+.++.+.-. ......+...+||||+||+++|++...+|+|+|+||||+++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 11111 22345566666665321 01123456789999999999984333399999999999999985
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-19 Score=160.64 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=107.0
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCC-CCCcc-cH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIP-ALFEG-TV 154 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~-~l~~~-tv 154 (298)
..+++++++++++| ++|+||||||||||+|+|+|.+.+ |.|.++|.++......+.++.++++||.. ..++. ++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45899999999999 999999999999999999999887 79999998876544445566789999985 44553 77
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC-----------
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS----------- 223 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts----------- 223 (298)
.|++......++ .... . ... ...++.+.+|||||+||+.+++|+.++|++| |||+.
T Consensus 109 ~Deid~~~~~r~----~~~~----~--~~~-~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~ 175 (274)
T 2x8a_A 109 FDEVDALCPRRS----DRET----G--ASV-RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFV 175 (274)
T ss_dssp EETCTTTCC-------------------CT-THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEEC
T ss_pred eehhhhhhcccC----CCcc----h--HHH-HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEe
Confidence 788865432111 0000 0 122 3456677789999999999999999999985 99964
Q ss_pred -CCCHHHHHHHHHHH
Q 022337 224 -ALDPISTQNIEDVL 237 (298)
Q Consensus 224 -~LD~~~~~~~~~~l 237 (298)
--|...+.++++.+
T Consensus 176 ~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 176 GLPPPADRLAILKTI 190 (274)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 23666777666654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-15 Score=126.85 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=71.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc--EEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG--TVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G--~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
+|+++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999876 46 455444322110
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHH
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~ 236 (298)
+++.+|++|++|||++ +|+..++.++++
T Consensus 79 ---------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~l 106 (149)
T 2kjq_A 79 ---------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSI 106 (149)
T ss_dssp ---------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHH
T ss_pred ---------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHH
Confidence 2356899999999998 666668999999
Q ss_pred HHHHHhcCCcE-EEEEccC
Q 022337 237 LVKLKKKHGMT-IVMVSHS 254 (298)
Q Consensus 237 l~~l~~~~g~t-ii~itHd 254 (298)
+.++.++ |++ +|++||.
T Consensus 107 i~~~~~~-g~~~iiits~~ 124 (149)
T 2kjq_A 107 FNRFRNS-GKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHH-TCCEEEEEESS
T ss_pred HHHHHHc-CCcEEEEECCC
Confidence 9988664 787 8888884
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-17 Score=155.81 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=96.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhH
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR 159 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~ 159 (298)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+... +...+|+++++.. ...++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999843 344444332 2235677776541 1112222221
Q ss_pred hCc---cccCCCccH-H---HHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHH
Q 022337 160 YGP---QLRGKKLTE-N---EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 232 (298)
Q Consensus 160 ~~~---~~~~~~~~~-~---~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~ 232 (298)
+.. ...+..... . ++..++..+++. ++++.+||+||+|++++|++|+.+|.++++ +.+|+... .
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~ 285 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-E 285 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-H
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-H
Confidence 110 000111000 0 011112222321 345678999999999999999999999999 99999877 5
Q ss_pred HHHHHHHHHhcCCcEEEEEc
Q 022337 233 IEDVLVKLKKKHGMTIVMVS 252 (298)
Q Consensus 233 ~~~~l~~l~~~~g~tii~it 252 (298)
.++.+.+..++.+.+++++|
T Consensus 286 ~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 286 AVKALADALAREGLAVLPVS 305 (416)
T ss_dssp HHHHHHHHHHTTTSCEEECC
T ss_pred HHHHHHHHHHhcCCeEEEEE
Confidence 55555555444577777766
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-17 Score=145.33 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=87.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG 166 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~ 166 (298)
.++|++++|+||||||||||+++|+|+++|+ | ..+|+++++...++.+..+|+..... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~-~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPR-KG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGG-TT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhccccc-CC
Confidence 5789999999999999999999999999875 3 13566666554444444444321100 01
Q ss_pred C--CccHHHHHHHHHHcC----CCchhhcCCCCCCChhHHHHHHHH-HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHH
Q 022337 167 K--KLTENEVYKLLSLAD----LDSSFLNKTGGEISVGQAQRVALA-RTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 239 (298)
Q Consensus 167 ~--~~~~~~~~~~l~~~~----l~~~~~~~~~~~LSgGqkQRv~iA-ral~~~p~illLDEPts~LD~~~~~~~~~~l~~ 239 (298)
. ..+...+.+.+..+. +.-. .......+|+||+||+++| ++++.++.++++|||.- ..+.+
T Consensus 79 ~~~~~~~~~~~~~l~~l~~~~~i~~p-~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~ 146 (208)
T 3c8u_A 79 APETFDFEGFQRLCHALKHQERVIYP-LFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTA 146 (208)
T ss_dssp SGGGBCHHHHHHHHHHHHHCSCEEEE-EEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGG
T ss_pred CCchhhHHHHHHHHHHHhcCCceecc-cCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHH
Confidence 1 112223333333221 1101 1233446899999999998 88899998888999841 11122
Q ss_pred HHhcCCcEEEEEccCHHH-HHhhcCE
Q 022337 240 LKKKHGMTIVMVSHSIKQ-IQRIADV 264 (298)
Q Consensus 240 l~~~~g~tii~itHd~~~-~~~~~d~ 264 (298)
. --.+++++++.+. +.+.+.|
T Consensus 147 ~----~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 147 I----WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp T----CSEEEEECCCHHHHHHHHHHH
T ss_pred h----cCEEEEEeCCHHHHHHHHHHH
Confidence 2 2367888888776 5566666
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-17 Score=153.12 Aligned_cols=139 Identities=18% Similarity=0.207 Sum_probs=99.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHhcCCC--CCccE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEI-------------------PKGVIMGIIGPSGSGKSTLLRALNRLWE--PPSGT 120 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i-------------------~~Ge~~~iiG~nGsGKSTLlk~l~gl~~--p~~G~ 120 (298)
.+|+++||++.|. ++++++|+.+ ++|+++||+||||||||||+++|+|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 4689999999992 6999999988 9999999999999999999999999998 99999
Q ss_pred EEE---CCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCC
Q 022337 121 VFL---DGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEIS 196 (298)
Q Consensus 121 I~i---~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 196 (298)
|.+ ||... +. ..++.+|++ |+..+++ .++.+|+.+...+..... .+ ..+....+
T Consensus 113 i~vi~~d~~~~---~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------~i-----~~P~~~~~ 170 (308)
T 1sq5_A 113 VELITTDGFLH---PN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------NV-----TAPVYSHL 170 (308)
T ss_dssp EEEEEGGGGBC---CH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------CE-----EECCEETT
T ss_pred EEEEecCCccC---cH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------ce-----eccccccc
Confidence 999 88764 22 335568888 8777665 489998876532221100 01 11111222
Q ss_pred hhHHHHHHHHHHHcCCCCeEEEeCcCCCCCH
Q 022337 197 VGQAQRVALARTLANEPEVLLLDEPTSALDP 227 (298)
Q Consensus 197 gGqkQRv~iAral~~~p~illLDEPts~LD~ 227 (298)
.+ +|+..+.+.+.+|+++|+|.|....++
T Consensus 171 ~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 171 IY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp TT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cc--CcccccceecCCCCEEEECchhhCCCc
Confidence 22 333333345678999999999998873
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-15 Score=125.94 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=81.3
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHhCc
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGP 162 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~ 162 (298)
|+++++|++++|+||||||||||+++|+|++ | .+.+++.++...+....+..++|+||++.+|+. ++.+++.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 6778899999999999999999999999997 3 588888777654433345679999999887764 7777766543
Q ss_pred cccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 163 QLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 163 ~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
...+. ....+.+.+.++.-.. -+.+ +..|-+.-++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~--vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRD--VLLE--------IDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCE--EEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcCCe--EEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence 32221 1234456666554221 1222 234444555666777888888777
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-17 Score=157.28 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=114.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhc------------CCCCCccEEEECCEeCCCCCH-HHHhcce---EEEeCCCCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNR------------LWEPPSGTVFLDGRDITDLDV-LSLRRKV---GMLFQIPAL 149 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~g------------l~~p~~G~I~i~g~~i~~~~~-~~~~~~i---g~v~Q~~~l 149 (298)
.+++|+.++|+|+||||||||+++|+| ...|+.|.|.+.|..+..... ..-++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 678999999998854321100 0011223 366777766
Q ss_pred Ccc-cHHHHh--HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC--CeEEEeCcCCC
Q 022337 150 FEG-TVVDNI--RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP--EVLLLDEPTSA 224 (298)
Q Consensus 150 ~~~-tv~eni--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p--~illLDEPts~ 224 (298)
++. +..+++ .|...++.. ..++..++.. .+..+..+||+. +| +++++|||+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~-------d~il~Vvd~~---~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV-------DAIYQVVRAF---DDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC-------SEEEEEEECC---CTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH-------HHHHHHHhcc---ccceeeeecccc------------CcchhhhhchhhhHH
Confidence 543 433322 111000000 0011111111 123444566653 99 99999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhcCCcEEEEEccCHHHHHhhcCEEE-EEeCC-EEEEeeC
Q 022337 225 LDPISTQNIEDVLVKL-KKKHGMTIVMVSHSIKQIQRIADVVC-LLVNG-EIVEVLK 278 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l-~~~~g~tii~itHd~~~~~~~~d~v~-vl~~G-~i~~~g~ 278 (298)
+|+...+..++.+.+. .+ .|.|++ +|.+..+..+||++. +|++| +++..++
T Consensus 154 ~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 9999999999999987 54 477753 999999999999999 99999 8876554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-15 Score=137.91 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=68.6
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE---CCEeCCCCCHHHHhcceEEEeCCCCCCc-----ccHHH
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL---DGRDITDLDVLSLRRKVGMLFQIPALFE-----GTVVD 156 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i---~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-----~tv~e 156 (298)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ +|+.+.... ..++..+||++|.|.+.. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 667899999999999999999999999999999999999 888775432 112223899999997643 478 8
Q ss_pred HhH--hC-c-------cccC---CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHH
Q 022337 157 NIR--YG-P-------QLRG---KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR 202 (298)
Q Consensus 157 ni~--~~-~-------~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQR 202 (298)
|+. |+ . .+.+ .......+.++++.+++.+ ...+....|+.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~-~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ-YRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH-HHHHHHHHHHHHHhhc
Confidence 884 32 0 1111 1122356889999999974 3444455677788773
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-17 Score=145.53 Aligned_cols=187 Identities=13% Similarity=0.059 Sum_probs=81.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh-cCCCCCccEEEECCEeCCCCCHH-HHhcceEEEeCCCCCCcc-cH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN-RLWEPPSGTVFLDGRDITDLDVL-SLRRKVGMLFQIPALFEG-TV 154 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~-gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ig~v~Q~~~l~~~-tv 154 (298)
+..+++||++++|++++|+||||||||||+++|+ |++++ + .++.++...++. .....++|.|+++..|.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----I-VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C----E-EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----c-ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4678999999999999999999999999999999 99854 1 233322211110 011234577776654442 44
Q ss_pred HHHhHhCccccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH-HHH-HHHcCCCCeEEEeCcCCCCCHHHH
Q 022337 155 VDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV-ALA-RTLANEPEVLLLDEPTSALDPIST 230 (298)
Q Consensus 155 ~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv-~iA-ral~~~p~illLDEPts~LD~~~~ 230 (298)
.+++.......+. ....+.+.+.++.-.. -+.+-.+. -...-+++. .-+ ..++..|+..++||++.+.|..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~ 166 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDS 166 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC---------
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCH
Confidence 4444321111110 0112234444444221 11111000 011113333 112 234567788888999999998887
Q ss_pred HHHHHHHHHHHh----cCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 231 QNIEDVLVKLKK----KHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 231 ~~~~~~l~~l~~----~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
+.+.+.|.+... .....+++++|+++.+.+-+++++-..+++
T Consensus 167 ~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 167 EVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp -----CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 777766654322 124567888889888777666665444444
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-14 Score=127.80 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=97.9
Q ss_pred CCcceeee-eEEEeCCcEEEEEcCCCccHHHHHH-HHhcCCCCCccEEEECCEeCCCCCHHHH---hcceEEEeCCCCCC
Q 022337 76 GAPILKGV-NMEIPKGVIMGIIGPSGSGKSTLLR-ALNRLWEPPSGTVFLDGRDITDLDVLSL---RRKVGMLFQIPALF 150 (298)
Q Consensus 76 ~~~vL~~i-sl~i~~Ge~~~iiG~nGsGKSTLlk-~l~gl~~p~~G~I~i~g~~i~~~~~~~~---~~~ig~v~Q~~~l~ 150 (298)
+.+.|+.+ .--+++|++++|.||||||||||+. ++.+..++..+.+++++.. +..++ .+.+|+.+|+...
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~- 82 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE- 82 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH-
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh-
Confidence 34566666 6679999999999999999999954 5555555545556665432 22222 2234554442100
Q ss_pred cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCC--C
Q 022337 151 EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSAL--D 226 (298)
Q Consensus 151 ~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~L--D 226 (298)
.+++.+.-... .... .+...+. +...-+....+....++.++ .+|+++++|+|++.+ |
T Consensus 83 ----~~~l~~~~~~~-~~~~------~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~ 144 (247)
T 2dr3_A 83 ----KGMFAMVDAFT-AGIG------KSKEYEK-------YIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINK 144 (247)
T ss_dssp ----HTSEEEEECST-TTTC------C--CCCS-------CBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTC
T ss_pred ----CCcEEEEecch-hhcc------ccccccc-------ccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCC
Confidence 00111000000 0000 0000011 00011112223333333333 579999999999988 6
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccCHHH--------HHhhcCEEEEEeC
Q 022337 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--------IQRIADVVCLLVN 270 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~~~~g~tii~itHd~~~--------~~~~~d~v~vl~~ 270 (298)
+...++++..|.++.++.|.|||+++|.... +..+||.|+.|+.
T Consensus 145 ~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 145 PAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 6556677777777766779999999998775 5678999999974
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-14 Score=129.14 Aligned_cols=113 Identities=18% Similarity=0.255 Sum_probs=84.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhC
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYG 161 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~ 161 (298)
.++++.++|++++|+|||||||||+++.|++++.++.|+|.+.+.|..+ . ...+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~-------------------~a~e----- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--A-------------------AAIE----- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--H-------------------HHHH-----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--H-------------------HHHH-----
Confidence 4567778999999999999999999999999999999999988776422 0 0111
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH---HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV---ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv---~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~ 238 (298)
.+..+++..+++ . ...+|+|+.|++ ++++|+..+|+++|+|||.. ......+++.+.
T Consensus 150 -----------qL~~~~~~~gl~-~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~ 209 (306)
T 1vma_A 150 -----------QLKIWGERVGAT-V-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELR 209 (306)
T ss_dssp -----------HHHHHHHHHTCE-E-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHH
T ss_pred -----------HHHHHHHHcCCc-E-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHH
Confidence 223345566774 2 235789999999 99999999999999999974 334455555555
Q ss_pred HH
Q 022337 239 KL 240 (298)
Q Consensus 239 ~l 240 (298)
++
T Consensus 210 ~l 211 (306)
T 1vma_A 210 KV 211 (306)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-13 Score=126.48 Aligned_cols=142 Identities=12% Similarity=0.104 Sum_probs=100.3
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
+.++++++.|++ .. ++++|+ +|++++++|+||+||||+++.|++++.+..|+|.+.+.|+... ...
T Consensus 77 ~~~~~l~~~~~~-~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~--~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP--AAR------- 142 (295)
T ss_dssp HHHHHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH--HHH-------
T ss_pred HHHHHHHHHHCC-CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH--hHH-------
Confidence 456678788843 22 788998 9999999999999999999999999999999999988776431 100
Q ss_pred eCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc-C
Q 022337 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP-T 222 (298)
Q Consensus 144 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP-t 222 (298)
+.+ ....+..+++ .+. . ....+..+.+|.+++++...+++++|+||| +
T Consensus 143 ------------~ql----------------~~~~~~~~l~-~~~-~-~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 143 ------------EQL----------------RLLGEKVGVP-VLE-V-MDGESPESIRRRVEEKARLEARDLILVDTAGR 191 (295)
T ss_dssp ------------HHH----------------HHHHHHHTCC-EEE-C-CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCC
T ss_pred ------------HHH----------------HHhcccCCeE-EEE-c-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 000 0112334553 111 0 011234456799999998899999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVS 252 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~it 252 (298)
.++|.....++.+....+.. ..+++++.
T Consensus 192 ~~~d~~~~~~l~~~~~~~~~--~~~~lv~~ 219 (295)
T 1ls1_A 192 LQIDEPLMGELARLKEVLGP--DEVLLVLD 219 (295)
T ss_dssp SSCCHHHHHHHHHHHHHHCC--SEEEEEEE
T ss_pred ccccHHHHHHHHHHhhhcCC--CEEEEEEe
Confidence 99999988888887776532 44554443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-13 Score=124.39 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=93.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK 167 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~ 167 (298)
.+|++++++|||||||||+++.|++.+.+++| +++.++.+++ +..++.+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~--~r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDT--YRIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCC--SSTTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCc--ccchHHHHHHH-------
Confidence 57999999999999999999999999988778 2456666655 22344444432
Q ss_pred CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH--hcCC
Q 022337 168 KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK--KKHG 245 (298)
Q Consensus 168 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~--~~~g 245 (298)
..+..+++. ... .+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+. ...+
T Consensus 156 ---------~~~~~gl~~-~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~ 215 (296)
T 2px0_A 156 ---------YAELLQAPL-EVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQ 215 (296)
T ss_dssp ---------HHTTTTCCC-CBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEE
T ss_pred ---------HHHhcCCCe-Eec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCe
Confidence 222334431 111 12 2334666665 4999999999 99999877655555443322 1213
Q ss_pred cEEEE-EccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 246 MTIVM-VSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 246 ~tii~-itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
.++++ .||+.+.+.++|+++..+..+.++.
T Consensus 216 ~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 216 SFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp EEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 34444 4999998989899877677777765
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-13 Score=133.69 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=53.9
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~ 130 (298)
++.+++... ..+|+++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 344555432 3589999999999 9999999999999999999999999999999999988754
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.4e-14 Score=134.54 Aligned_cols=181 Identities=13% Similarity=0.148 Sum_probs=118.8
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhcce-EEEeCCCCCCcccH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVFLDGRDITDLDVLSLRRKV-GMLFQIPALFEGTV 154 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~i-g~v~Q~~~l~~~tv 154 (298)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...+.+++ +.... ++
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~----~~--- 259 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGN----IN--- 259 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHT----CC---
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcC----CC---
Confidence 4578888888999999999999999999999999987766545 56555433 2333332221 11111 00
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCCH-----
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDP----- 227 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD~----- 227 (298)
.+.+..+. + ...+.+++.++++.++... +.-.....+|.+|.+ +.+|.+. .+|+++++|+++.-.++
T Consensus 260 ~~~l~~g~-l--~~~~~~~~~~a~~~l~~~~-l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~ 333 (454)
T 2r6a_A 260 AQNLRTGK-L--TPEDWGKLTMAMGSLSNAG-IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKE 333 (454)
T ss_dssp HHHHHTSC-C--CHHHHHHHHHHHHHHHSSC-EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC---
T ss_pred HHHHhcCC-C--CHHHHHHHHHHHHHHhcCC-EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCC
Confidence 01121110 0 0112234555555554322 222335679999876 5667766 68999999999987742
Q ss_pred ---HHHHHHHHHHHHHHhcCCcEEEEEcc---------C--HH--------HHHhhcCEEEEEeCCEE
Q 022337 228 ---ISTQNIEDVLVKLKKKHGMTIVMVSH---------S--IK--------QIQRIADVVCLLVNGEI 273 (298)
Q Consensus 228 ---~~~~~~~~~l~~l~~~~g~tii~itH---------d--~~--------~~~~~~d~v~vl~~G~i 273 (298)
....++.+.|+.++++.|++||+++| + +. .+...||.|++|+.++.
T Consensus 334 ~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 334 NRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 34467778888888778999999999 3 32 57788999999987654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-14 Score=137.15 Aligned_cols=174 Identities=18% Similarity=0.240 Sum_probs=109.1
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhc--CCCCCccEEEECCEeCCCCCHHHHhc--ce-EEEeCCCCCCcccHHH
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNR--LWEPPSGTVFLDGRDITDLDVLSLRR--KV-GMLFQIPALFEGTVVD 156 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g--l~~p~~G~I~i~g~~i~~~~~~~~~~--~i-g~v~Q~~~l~~~tv~e 156 (298)
-+++++.++..+.|.|++||||||++++|.. +++++.|++.+.+.|.+......+.. ++ +.|.+++ ..+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~----~~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDM----KDAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSH----HHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCH----HHHHH
Confidence 4778889999999999999999999999886 67777888888877765432211110 00 1111110 01122
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCchhhc---CCCCCCChhHHHHH----------HHHHHHcCCCC-eEEEeCcC
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN---KTGGEISVGQAQRV----------ALARTLANEPE-VLLLDEPT 222 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~LSgGqkQRv----------~iAral~~~p~-illLDEPt 222 (298)
.+.... .+-+++ .+++...|+. ++.+ +....+|+||+|+. ++|+++...|. ++++||++
T Consensus 235 ~L~~~~-----~EmerR-~~ll~~~Gv~-~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~ 307 (512)
T 2ius_A 235 ALRWCV-----NEMERR-YKLMSALGVR-NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFA 307 (512)
T ss_dssp HHHHHH-----HHHHHH-HHHHHHTTCS-SHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHH
T ss_pred HHHHHH-----HHHHHH-HHHHHHcCCc-cHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHH
Confidence 221110 111222 3677788875 3322 22346899998763 46677788898 89999999
Q ss_pred CCCCHHHHHHHHHHHHHH---HhcCCcEEEEEccCHH-------HHHhhcCEEEE
Q 022337 223 SALDPISTQNIEDVLVKL---KKKHGMTIVMVSHSIK-------QIQRIADVVCL 267 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l---~~~~g~tii~itHd~~-------~~~~~~d~v~v 267 (298)
+-+|.. ...+.+.|.++ .+..|.++|++||+++ ...++.+||.+
T Consensus 308 ~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 308 DLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 988743 34455555444 3445889999999987 44566677655
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-15 Score=138.49 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=96.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
-+++++.+.|. +..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........++.++++
T Consensus 50 ~~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 50 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 45566777673 457899999999999 89999999999999999999885 89999998765432222334567888
Q ss_pred eCCCC-CCcc-cHHHHhH-hCccccC-CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 144 FQIPA-LFEG-TVVDNIR-YGPQLRG-KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 144 ~Q~~~-l~~~-tv~eni~-~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||... ..+. ++.|++. ++..... .....++..+.+. +...+|||||+||+.+++|+.++|++ +|
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~----------~ll~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN----------QLLVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH----------HHHHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH----------HHHHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 88763 4443 7777773 3322110 0000111112211 12235899999999999999999987 67
Q ss_pred CcC
Q 022337 220 EPT 222 (298)
Q Consensus 220 EPt 222 (298)
++.
T Consensus 193 ~~l 195 (278)
T 1iy2_A 193 PAL 195 (278)
T ss_dssp HHH
T ss_pred HhH
Confidence 764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-12 Score=119.71 Aligned_cols=145 Identities=20% Similarity=0.319 Sum_probs=85.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-EECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQL 164 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~ 164 (298)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. .+.+++|+.+++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~------------------ 115 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS------------------ 115 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG------------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH------------------
Confidence 478999999999999999999888876543333333 332221 0110 011111111110
Q ss_pred cCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC--CCeEEEeCcCCCC----------CH---HH
Q 022337 165 RGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE--PEVLLLDEPTSAL----------DP---IS 229 (298)
Q Consensus 165 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~--p~illLDEPts~L----------D~---~~ 229 (298)
+ ... .+ .+. .|-+.++++++.+ |+++++|||++.+ |+ ..
T Consensus 116 ------------------l---~i~-~~--~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q 169 (349)
T 2zr9_A 116 ------------------L---LVS-QP--DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQ 169 (349)
T ss_dssp ------------------C---EEE-CC--SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHH
T ss_pred ------------------e---EEe-cC--CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHH
Confidence 0 000 01 122 2345678888755 9999999999998 33 22
Q ss_pred HHHHHHHHHHH---HhcCCcEEEEEccCHH----------------HHHhhcCEEEEEeCCEEEEee
Q 022337 230 TQNIEDVLVKL---KKKHGMTIVMVSHSIK----------------QIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 230 ~~~~~~~l~~l---~~~~g~tii~itHd~~----------------~~~~~~d~v~vl~~G~i~~~g 277 (298)
.+.+.+.++++ .++.|+|||+++|... .+..+||.++.++.++++..|
T Consensus 170 ~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 170 ARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 22444444444 3556999999999643 256789999999887665443
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.8e-14 Score=124.34 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=52.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH--------H
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV--------L 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~--------~ 134 (298)
.|+++|+...|. . +|++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+. .
T Consensus 9 ~l~l~~~~~~~~-~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFFA-R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEEE-E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeecccC-C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 488888876552 1 566666 8999999999999999999999999999999999998743221 1
Q ss_pred HHhcceEEEeCC
Q 022337 135 SLRRKVGMLFQI 146 (298)
Q Consensus 135 ~~~~~ig~v~Q~ 146 (298)
..+..++|++|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 235679999985
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-15 Score=136.04 Aligned_cols=143 Identities=20% Similarity=0.231 Sum_probs=97.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
.+++++.+.|. +..+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++........++.++++
T Consensus 26 ~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 26 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 45667777673 457899999999999 89999999999999999999885 88999988765332222334567888
Q ss_pred eCCCC-CCc-ccHHHHh-HhCccccC-CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 144 FQIPA-LFE-GTVVDNI-RYGPQLRG-KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 144 ~Q~~~-l~~-~tv~eni-~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||... ..+ .++.|++ .++..... .....++..+.+. +...+|||||+||+.+++|+.++|++ +|
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~----------~ll~~l~g~~~~~~~i~~a~t~~p~~--ld 168 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN----------QLLVEMDGFEKDTAIVVMAATNRPDI--LD 168 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH----------HHHHHHHTCCTTCCEEEEEEESCGGG--SC
T ss_pred HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH----------HHHHHHhCCCCCCCEEEEEccCCchh--CC
Confidence 88754 344 3667777 33322110 0000111111111 11235889999999999999999998 68
Q ss_pred CcCC
Q 022337 220 EPTS 223 (298)
Q Consensus 220 EPts 223 (298)
++.-
T Consensus 169 ~~l~ 172 (254)
T 1ixz_A 169 PALL 172 (254)
T ss_dssp GGGG
T ss_pred HHHc
Confidence 8764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-13 Score=115.77 Aligned_cols=133 Identities=23% Similarity=0.262 Sum_probs=74.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC-----------CccEEEECCEeCCC--CCHHHHhcceEEEeC---CCC--C--Cc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEP-----------PSGTVFLDGRDITD--LDVLSLRRKVGMLFQ---IPA--L--FE 151 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p-----------~~G~I~i~g~~i~~--~~~~~~~~~ig~v~Q---~~~--l--~~ 151 (298)
.++|+|+||||||||++.++|...| ++|+|.++|+++.- ++....++..++++| +.. + ++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 5899999999999999999998876 57999999976421 110001111222222 110 0 00
Q ss_pred c---cHHHHhHhCccccCCCccHHHHHHHHHHc--CCC-chhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC
Q 022337 152 G---TVVDNIRYGPQLRGKKLTENEVYKLLSLA--DLD-SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225 (298)
Q Consensus 152 ~---tv~eni~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L 225 (298)
. ...+++.. ...++.+.. +.. ....++ . +|..-..+.+.+|++++.+|+++++| ||++
T Consensus 111 ~~~~~s~~~~~~------------~~~~~~~~~~~~~~i~~v~nK-~-Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sal 174 (191)
T 1oix_A 111 IAKHLTYENVER------------WLKELRDHADSNIVIMLVGNK-S-DLRHLRAVPTDEARAFAEKNGLSFIE--TSAL 174 (191)
T ss_dssp TTCHHHHHTHHH------------HHHHHHHHSCTTCEEEEEEEC-G-GGGGGCCSCHHHHHHHHHHTTCEEEE--CCTT
T ss_pred CcCHHHHHHHHH------------HHHHHHHhcCCCCcEEEEEEC-c-ccccccccCHHHHHHHHHHcCCEEEE--EeCC
Confidence 0 00111110 001111111 000 000111 0 12211223477899999999999999 9999
Q ss_pred CHHHHHHHHHHHHHH
Q 022337 226 DPISTQNIEDVLVKL 240 (298)
Q Consensus 226 D~~~~~~~~~~l~~l 240 (298)
|+.+..++++.|.+.
T Consensus 175 d~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 175 DSTNVEAAFQTILTE 189 (191)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988753
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-13 Score=136.03 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=108.5
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc-cEEEECCEeCCCCCHHHHhcceEEEeC
Q 022337 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-GTVFLDGRDITDLDVLSLRRKVGMLFQ 145 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~-G~I~i~g~~i~~~~~~~~~~~ig~v~Q 145 (298)
++++..| +...+++++++.+.+|+.++|+||||+|||||+++|++++++.. |.+.+++.+.... ...++++|+
T Consensus 38 ~~l~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~ 111 (604)
T 3k1j_A 38 KLIDQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPA 111 (604)
T ss_dssp SHHHHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEET
T ss_pred cccceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEec
Confidence 3444445 45679999999999999999999999999999999999999988 8888888765432 345788876
Q ss_pred CC----------------------CCCc-ccHHHHhHhCcccc-CCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH
Q 022337 146 IP----------------------ALFE-GTVVDNIRYGPQLR-GKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ 201 (298)
Q Consensus 146 ~~----------------------~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ 201 (298)
.. ..+. .++.+|+....... +.+...+......+.+|.-+ ........+|+|++|
T Consensus 112 g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~-~~~~~~g~~~~g~~~ 190 (604)
T 3k1j_A 112 CQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVR-HDPFQSGGLGTPAHE 190 (604)
T ss_dssp THHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEEC-CCCC----CCCCGGG
T ss_pred chHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEE-echhhcCCccccccc
Confidence 53 1111 13333333221100 00000000011222333211 112233569999999
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHH
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 239 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~ 239 (298)
++..++....++.+|++||... |++.....+++.|.+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999999988 899999999888875
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-11 Score=114.69 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=93.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-EECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCcc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQ 163 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~ 163 (298)
=+++|+++.|.||+|||||||+..+++...+..|.| ++++.... .. .+.+++|+.+|+..+.. .++.+.+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~i~~~~~~e~~l~~--- 130 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLLISQPDHGEQALEI--- 130 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCEEECCSSHHHHHHH---
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhhhhhccCHHHHHHH---
Confidence 388999999999999999999999999888777865 66665432 22 24456777776543322 244433321
Q ss_pred ccCCCccHHHHHHHHHHcCCC----chhhcCCC-CCCCh--hHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHH
Q 022337 164 LRGKKLTENEVYKLLSLADLD----SSFLNKTG-GEISV--GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~-~~LSg--GqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~ 236 (298)
+..+++....+ +.+....+ .+++| |++|++..||++. +++..
T Consensus 131 ----------~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la---------------------~~L~~ 179 (356)
T 3hr8_A 131 ----------VDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS---------------------QALRK 179 (356)
T ss_dssp ----------HHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH---------------------HHHHH
T ss_pred ----------HHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH---------------------HHHHH
Confidence 11111111111 01111111 22333 6666666777665 56677
Q ss_pred HHHHHhcCCcEEEEEccC----------------HHHHHhhcCEEEEEeC
Q 022337 237 LVKLKKKHGMTIVMVSHS----------------IKQIQRIADVVCLLVN 270 (298)
Q Consensus 237 l~~l~~~~g~tii~itHd----------------~~~~~~~~d~v~vl~~ 270 (298)
|..++++.+.|||++.|- -..+..++|-++.++.
T Consensus 180 L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 180 IAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp HHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 777877789999999887 2336678899998885
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.3e-12 Score=106.97 Aligned_cols=134 Identities=21% Similarity=0.277 Sum_probs=83.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE--eCCCCCH----HHHhcceEEEeCCCCC-C-c-
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR--DITDLDV----LSLRRKVGMLFQIPAL-F-E- 151 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~--~i~~~~~----~~~~~~ig~v~Q~~~l-~-~- 151 (298)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++..... ...+..|.++||++.- + +
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 7899999999 99999999999999999999999887765432221 1111100 0123569999998641 1 1
Q ss_pred ---ccHHHHhHh-C---ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCC
Q 022337 152 ---GTVVDNIRY-G---PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224 (298)
Q Consensus 152 ---~tv~eni~~-~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~ 224 (298)
.++...+.- + ....+......++.++++.++++.+ ...-++.||.+++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~----~~~~~~qg~~~~l~~------------------- 153 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPD----GYNIVLQGDITKFIK------------------- 153 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTT----CTTEECTTCTTHHHH-------------------
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCC----CCEEEEcccHHHHHh-------------------
Confidence 122221111 0 0111222345678889999998632 123578888877652
Q ss_pred CCHHHHHHHHHHHH
Q 022337 225 LDPISTQNIEDVLV 238 (298)
Q Consensus 225 LD~~~~~~~~~~l~ 238 (298)
++|..++++++.+.
T Consensus 154 ~~~~~r~~~ld~~~ 167 (182)
T 3kta_A 154 MSPLERRLLIDDIS 167 (182)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 46777777766653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3e-13 Score=128.24 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=85.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDN 157 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~en 157 (298)
.+++++|+.+++|++++|+||||||||||+++|+|. .+|++...+ ... ..+...+|++||.+.++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 589999999999999999999999999999999995 478776511 111 11222477778876421 122
Q ss_pred hHhCcc-ccCCCc-c----HHHHHHHHHH---------------cCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 158 IRYGPQ-LRGKKL-T----ENEVYKLLSL---------------ADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 158 i~~~~~-~~~~~~-~----~~~~~~~l~~---------------~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+.+... .++... . ...+...++- .-+.....+.....+++|++||++.+.+++.+|+++
T Consensus 225 ~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp CCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 222111 000000 0 0122333320 001112344566789999999999988889999988
Q ss_pred E-EeCcCC
Q 022337 217 L-LDEPTS 223 (298)
Q Consensus 217 l-LDEPts 223 (298)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 8 999987
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-11 Score=105.58 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~ 241 (298)
...|++++.+|+++++| ||++|+.+..++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887653
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-11 Score=110.24 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=54.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh---cCCCCCccEEE--------ECCEeCC-CCCHHHHhcceEEEeCC
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN---RLWEPPSGTVF--------LDGRDIT-DLDVLSLRRKVGMLFQI 146 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~---gl~~p~~G~I~--------i~g~~i~-~~~~~~~~~~ig~v~Q~ 146 (298)
++++.+ ++|++++|+|||||||||++|+|+ |+..|++|.|+ .+|.++. ......+++.+++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 8998884 33456778899999986
Q ss_pred C
Q 022337 147 P 147 (298)
Q Consensus 147 ~ 147 (298)
+
T Consensus 96 ~ 96 (252)
T 4e22_A 96 Q 96 (252)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-11 Score=103.54 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=51.1
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHh
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRY 160 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~ 160 (298)
+-.++-++|++++|+||||||||||+++|++.+ |.+.++|.++... ....+..+|+++|++..++. ++.+++..
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 334667899999999999999999999999987 8999999877431 11223357889998665543 66666643
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.4e-11 Score=107.23 Aligned_cols=53 Identities=28% Similarity=0.360 Sum_probs=36.2
Q ss_pred CeEEEEeE-EEEeCCCCcceeeeeEEEeC---CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 62 PKFRVREL-RKESDDGAPILKGVNMEIPK---GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 62 ~~l~~~~l-~~~y~~~~~vL~~isl~i~~---Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++++++|+ +++|.++.++|+|+||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 99994456899999999999 9999999999999999999999854
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-10 Score=109.34 Aligned_cols=143 Identities=20% Similarity=0.316 Sum_probs=89.3
Q ss_pred CcE-EEEEcCCCccHHHHHHHHhcCCC-----------CCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCC-c--ccH
Q 022337 90 GVI-MGIIGPSGSGKSTLLRALNRLWE-----------PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF-E--GTV 154 (298)
Q Consensus 90 Ge~-~~iiG~nGsGKSTLlk~l~gl~~-----------p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~-~--~tv 154 (298)
|-. ++|+|++|||||||++.|+|... |+.|.|.++|.++. +....|++.+.|.-. . .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH
Confidence 444 99999999999999999999876 67799999987642 122356666544211 1 122
Q ss_pred HHHhHhCc---cccC-C-Cc--cH---HHHHHHHHHcCCCch---hhcCCCCCCChhHHHHHHHH----HHH-cCCCCeE
Q 022337 155 VDNIRYGP---QLRG-K-KL--TE---NEVYKLLSLADLDSS---FLNKTGGEISVGQAQRVALA----RTL-ANEPEVL 216 (298)
Q Consensus 155 ~eni~~~~---~~~~-~-~~--~~---~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkQRv~iA----ral-~~~p~il 216 (298)
.+.+...- .... . .. .. +.+.+.++.+++.+. +...++..+|+|++||+.++ +++ ..+|++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 22222110 0000 1 11 11 124566777665321 11345667898999988887 666 545555
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~ 242 (298)
+|+|++|..+...+++.|.++..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-10 Score=116.87 Aligned_cols=134 Identities=15% Similarity=0.120 Sum_probs=88.7
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhC
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYG 161 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~ 161 (298)
|+++++|..++|+|+||||||||++.|++...+ ..|+| .+|..+.++...+.++.+++.+|...++..++..|+.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 67988 788888777777777888888887655433322222211
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~ 241 (298)
+ |.. + ++ .......-..++-++++| |+.++++.++. +++.+.+
T Consensus 82 p-------------------G~~-~--------f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~~-- 124 (665)
T 2dy1_A 82 P-------------------GYG-D--------FV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVAER-- 124 (665)
T ss_dssp C-------------------CSG-G--------GH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHHH--
T ss_pred C-------------------Ccc-c--------hH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHHHH--
Confidence 0 100 0 10 011112224677888999 99999987763 3333322
Q ss_pred hcCCcEEEEEccCHHH
Q 022337 242 KKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 242 ~~~g~tii~itHd~~~ 257 (298)
.+..+|++.|.++.
T Consensus 125 --~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 125 --LGLPRMVVVTKLDK 138 (665)
T ss_dssp --TTCCEEEEEECGGG
T ss_pred --ccCCEEEEecCCch
Confidence 37888889998875
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.4e-11 Score=118.52 Aligned_cols=92 Identities=25% Similarity=0.264 Sum_probs=61.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEE-ECCEeCCC-------CCHH---HHhcceEEEeCCCCCCccc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVF-LDGRDITD-------LDVL---SLRRKVGMLFQIPALFEGT 153 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~-i~g~~i~~-------~~~~---~~~~~ig~v~Q~~~l~~~t 153 (298)
.+++|++++|+|+||||||||+|+|+|.+.|++| +|. ++|.++.. ++.. ..++++++++|+ .+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~-----l~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE-----IT 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH-----HH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH-----HH
Confidence 5789999999999999999999999999999987 784 88876521 1211 223456777775 23
Q ss_pred HHHHhHhCccccCCCccHHHHHHHHHHcC
Q 022337 154 VVDNIRYGPQLRGKKLTENEVYKLLSLAD 182 (298)
Q Consensus 154 v~eni~~~~~~~~~~~~~~~~~~~l~~~~ 182 (298)
..+|+.+..........++++.++++.+|
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 34444433211111223456777888776
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-11 Score=118.90 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=96.3
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
.+++++...|. +..+++++++++++| +.|+||||+|||||+|+|++... .|.+.++|.++.........+++..+
T Consensus 41 ~~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 41 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 44555655553 446899999999999 89999999999999999999875 78999999877543333334557788
Q ss_pred eCCCC-CCcc-cHHHHhH-hCccccC-CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 144 FQIPA-LFEG-TVVDNIR-YGPQLRG-KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 144 ~Q~~~-l~~~-tv~eni~-~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||... ..+. .+.|++. ++..... .....++..+.+.. + ..+||||++|+..+++|..++|++ ||
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~------L----L~~Ldg~~~~~~viviAatn~p~~--LD 183 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ------L----LVEMDGFEKDTAIVVMAATNRPDI--LD 183 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH------H----HHHGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH------H----HHHhcccccCccEEEEEecCChhh--cC
Confidence 88764 3443 6677774 3322110 00011111112111 1 124788888998999999999987 89
Q ss_pred CcCCC
Q 022337 220 EPTSA 224 (298)
Q Consensus 220 EPts~ 224 (298)
|+.-.
T Consensus 184 ~aLlr 188 (499)
T 2dhr_A 184 PALLR 188 (499)
T ss_dssp TTTSS
T ss_pred ccccc
Confidence 88753
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5e-10 Score=103.81 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=63.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHH-----hcceEEE-eCCCCC
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSL-----RRKVGML-FQIPAL 149 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~-----~~~ig~v-~Q~~~l 149 (298)
++++||++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+.+... ..+ +..++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 478999999999999999999999999999999999999999998888754221 223 4568999 776555
Q ss_pred Ccc-cHHHHhH
Q 022337 150 FEG-TVVDNIR 159 (298)
Q Consensus 150 ~~~-tv~eni~ 159 (298)
.+. ++.+++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 553 5566654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.5e-10 Score=93.83 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=40.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA 148 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~ 148 (298)
++|++|++++|+||||||||||+++|++++.|+.| +.+ +....... ......++|+||++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 46889999999999999999999999999978666 212 22222111 111234788998764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-10 Score=99.81 Aligned_cols=61 Identities=30% Similarity=0.433 Sum_probs=47.7
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE--EECCEeCC
Q 022337 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV--FLDGRDIT 129 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I--~i~g~~i~ 129 (298)
+|++..+ +...+.+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4566655 45678888999999999999999999999999999999987 77988 88887654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-09 Score=109.57 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC-CCCHHHHHHHHHHHHHHHhcCCcEEEE-EccCHHHHHhhcCEE
Q 022337 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVM-VSHSIKQIQRIADVV 265 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~iAral~~~p~illLDEPts-~LD~~~~~~~~~~l~~l~~~~g~tii~-itHd~~~~~~~~d~v 265 (298)
..+.-+|.|+.+|..++++++.+++++|+|||.. +||......+++.+.+... ...+|++ .||+.+.+.++++..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 3455789999999999999999999999999996 9998877777776665543 2567777 499998888887753
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.2e-09 Score=101.91 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=78.7
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
...++++++.+++| +.|+||+|+|||||+|.+++... ..+-++ +..+
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~----------------------~~f~~i---------s~~~ 84 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN----------------------VPFFHI---------SGSD 84 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT----------------------CCEEEE---------EGGG
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC----------------------CCeeeC---------CHHH
Confidence 35678888888888 78999999999999999998321 001111 1000
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC----------CCCC
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT----------SALD 226 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt----------s~LD 226 (298)
.+ ....+ .+++++|-.+++|....|.+|++||+. ++.|
T Consensus 85 ~~------------------------------~~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~ 132 (476)
T 2ce7_A 85 FV------------------------------ELFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132 (476)
T ss_dssp TT------------------------------TCCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------
T ss_pred HH------------------------------HHHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCc
Confidence 00 00000 267889999999999999999999993 4677
Q ss_pred HHHHHHHHHHHHHHH---hcCCcEEEEEccCHHHH
Q 022337 227 PISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~---~~~g~tii~itHd~~~~ 258 (298)
+...+.+.+++..+. ...+..||.+||+++.+
T Consensus 133 ~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 776666767666552 23478899999998654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.8e-09 Score=96.06 Aligned_cols=170 Identities=16% Similarity=0.200 Sum_probs=89.1
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc--CCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCC-CC-cc
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR--LWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA-LF-EG 152 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g--l~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~-l~-~~ 152 (298)
..+|++++++++ .++|+|++|||||||++.|+| ++++.+|.+......+.-.+...-....+..++.+. .| +.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 358999999998 899999999999999999999 667777776544332210000000122333333322 11 11
Q ss_pred -cHHHHh-----HhCccccCCCcc--------HHH-HHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 153 -TVVDNI-----RYGPQLRGKKLT--------ENE-VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 153 -tv~eni-----~~~~~~~~~~~~--------~~~-~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
.+.+.+ .......+.... ... -..+.+.-|+. ......+.++.++|+..+++..+.+|+++|
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~---~~~~~~q~~~~~~~~~~~~~~~i~~~d~ii 177 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLT---KVAVDGQSDSIVKDIENMVRSYIEKPNCII 177 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBC---SSCCTTCCSSHHHHHHHHHHHHHHSSSEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCC---cCCcCCCchhHHHHHHHHHHHHhhcCCeEE
Confidence 222222 211110000000 000 00011111221 011123467889999999999999999888
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itH 253 (298)
+.-..+..|... ...+++++++......+++++|.
T Consensus 178 lvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 178 LAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred EEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 875444455443 55566777665442357777765
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-09 Score=92.24 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=78.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccH
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE 171 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 171 (298)
+++|+|||||||||+.++|+++ |...+++.+ +.+.+. + + + .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~--------~~~~~~---~-----~--------------~----~ 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV--------VAREVV---A-----K--------------D----S 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH--------HHHHTT---C-----S--------------S----C
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH--------HHHHHc---c-----C--------------C----h
Confidence 6899999999999999999993 544444321 111100 0 0 0 1
Q ss_pred HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 022337 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251 (298)
Q Consensus 172 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~i 251 (298)
..+.++.+.+|.. . -.+.|+.+|..+++.+..+|+.+..+ .+.++|..++.+.+.+.+. .+.++|+.
T Consensus 45 ~~~~~i~~~~g~~--~------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~ 111 (206)
T 1jjv_A 45 PLLSKIVEHFGAQ--I------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFV 111 (206)
T ss_dssp HHHHHHHHHHCTT--C------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEE
T ss_pred HHHHHHHHHhCHH--H------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEE
Confidence 2244455556643 1 13678999999999988888754333 3456777777766655433 25588888
Q ss_pred ccCHHHH--HhhcCEEEEEeC
Q 022337 252 SHSIKQI--QRIADVVCLLVN 270 (298)
Q Consensus 252 tHd~~~~--~~~~d~v~vl~~ 270 (298)
+|.+.+. ...||.+++++-
T Consensus 112 ~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 112 VPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp CTTTTTTTCGGGCSEEEEEEC
T ss_pred echhhhcCcHhhCCEEEEEEC
Confidence 9987665 677999999864
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.7e-09 Score=96.42 Aligned_cols=125 Identities=19% Similarity=0.165 Sum_probs=81.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK 168 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~ 168 (298)
..-.++++|++|+|||||++.|+|.. +. ..+.+.... ...++.+.++.. . ..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t~-----~~~~~~~~~~~~----------~--~~----- 217 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTTR-----GINVGQFEDGYF----------R--YQ----- 217 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCSS-----CEEEEEEEETTE----------E--EE-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCeee-----ceeEEEEEecCc----------e--EE-----
Confidence 44579999999999999999999865 21 111111110 112333332210 0 00
Q ss_pred ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe-CcCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 022337 169 LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMT 247 (298)
Q Consensus 169 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD-EPts~LD~~~~~~~~~~l~~l~~~~g~t 247 (298)
+++..|. .+..+.++|+|++|++. +.+...++-++++| +|.+++|......+++.+.+... ++.
T Consensus 218 --------l~Dt~G~----~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~p 282 (357)
T 2e87_A 218 --------IIDTPGL----LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLP 282 (357)
T ss_dssp --------EEECTTT----SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSC
T ss_pred --------EEeCCCc----cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCC
Confidence 0111222 23456689999999887 66666788899999 99999999998888888877643 678
Q ss_pred EEEEc--cCHH
Q 022337 248 IVMVS--HSIK 256 (298)
Q Consensus 248 ii~it--Hd~~ 256 (298)
+|++. ||+.
T Consensus 283 iilV~NK~Dl~ 293 (357)
T 2e87_A 283 FLVVINKIDVA 293 (357)
T ss_dssp EEEEECCTTTC
T ss_pred EEEEEECcccC
Confidence 88888 8874
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-09 Score=93.39 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=56.2
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-------------CCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCC
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-------------PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF 150 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~ 150 (298)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+....+...+++.+ .|+..++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34456899999999999999999999999876 66777 578776556666665544 3444444
Q ss_pred cccHHHHhHhCccccCCCccHHHHHHHHHH
Q 022337 151 EGTVVDNIRYGPQLRGKKLTENEVYKLLSL 180 (298)
Q Consensus 151 ~~tv~eni~~~~~~~~~~~~~~~~~~~l~~ 180 (298)
..++.+|. ||. ..+.++++++.
T Consensus 88 ~~~~~~n~-YGt-------~~~~v~~~l~~ 109 (197)
T 3ney_A 88 FGSYQGNM-FGT-------KFETVHQIHKQ 109 (197)
T ss_dssp EEEETTEE-EEE-------EHHHHHHHHHT
T ss_pred hhhhhcee-ccc-------chhhHHHHHhc
Confidence 45666662 331 23446666654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-08 Score=92.07 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=84.8
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
.+-|+.+.--+.+|+++.|.|++|+|||||+..++.-.....+ .+.|+.=+ ++..+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE-----ms~~q 88 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE-----MSAEQ 88 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS-----SCHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC-----CCHHH
Confidence 3456666657999999999999999999999888764322111 23332211 11111
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~ 235 (298)
.. .++.. ...+++. .+.+ ..||.+++||+..|...+.+++++|.|+|...+ .++..
T Consensus 89 l~-------------~Rlls--~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~ 145 (338)
T 4a1f_A 89 LA-------------LRALS--DLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRL 145 (338)
T ss_dssp HH-------------HHHHH--HHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHH
T ss_pred HH-------------HHHHH--HhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHH
Confidence 11 11111 1223321 2222 479999999999999999999999999987543 35666
Q ss_pred HHHHHHhcC-CcEEEEEcc
Q 022337 236 VLVKLKKKH-GMTIVMVSH 253 (298)
Q Consensus 236 ~l~~l~~~~-g~tii~itH 253 (298)
.++++.++. |..+|+|-|
T Consensus 146 ~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 146 QLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 677776665 788888853
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-09 Score=88.47 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=30.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEE
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFL 123 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i 123 (298)
.+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 37999999999999999999999999874 5566654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-07 Score=86.94 Aligned_cols=153 Identities=10% Similarity=0.043 Sum_probs=84.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ 163 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~ 163 (298)
-+++|+++.|.||+|||||||+..++.. .++..| |. ..++.|+.-+..+-+..+.+...-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g~----------~~~vlyi~~E~~~~~~~l~~~~~~--- 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----YP----------GGKIIFIDTENTFRPDRLRDIADR--- 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----BC----------CCEEEEEESSSCCCHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----CC----------CCeEEEEECCCCCCHHHHHHHHHH---
Confidence 4889999999999999999999998874 322100 00 012333332222111122221110
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH-HHHHHHHHHHc----CCCCeEEEeCcCCCCCHH----------
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ-AQRVALARTLA----NEPEVLLLDEPTSALDPI---------- 228 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kQRv~iAral~----~~p~illLDEPts~LD~~---------- 228 (298)
.+.. . .++++.+.+ . ...++.+ .+.+..++.++ .+++++++|+.++-....
T Consensus 180 -~g~~--~---~~~l~~l~~----~----~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r 245 (343)
T 1v5w_A 180 -FNVD--H---DAVLDNVLY----A----RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAER 245 (343)
T ss_dssp -TTCC--H---HHHHHTEEE----E----ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHH
T ss_pred -cCCC--H---HHHHhceeE----e----ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHH
Confidence 0111 1 112222111 0 1122332 24455555555 679999999999866432
Q ss_pred --HHHHHHHHHHHHHhcCCcEEEEEccCHHH-------------------HHhhcCEEEEEeC
Q 022337 229 --STQNIEDVLVKLKKKHGMTIVMVSHSIKQ-------------------IQRIADVVCLLVN 270 (298)
Q Consensus 229 --~~~~~~~~l~~l~~~~g~tii~itHd~~~-------------------~~~~~d~v~vl~~ 270 (298)
...+++..|++++++.+.+||+++|.... +..++|-++.|+.
T Consensus 246 ~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r 308 (343)
T 1v5w_A 246 QQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRK 308 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence 13456666777777779999999996532 3456788888874
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-09 Score=94.28 Aligned_cols=58 Identities=26% Similarity=0.420 Sum_probs=46.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC---CCCccEEEE--------CCEeCCC-CCHHHHhcceEEEeCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW---EPPSGTVFL--------DGRDITD-LDVLSLRRKVGMLFQIP 147 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~---~p~~G~I~i--------~g~~i~~-~~~~~~~~~ig~v~Q~~ 147 (298)
+.+++|+|||||||||+.++|++.+ .++.|++.. +|.++.. ....++++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999876 788999987 6776542 22345678899999875
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-08 Score=85.22 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=24.9
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46999999999999999999999999999999999765
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-07 Score=90.91 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=102.2
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-HhcceEEEe
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRKVGMLF 144 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~ig~v~ 144 (298)
.+++++.|++ .. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.|+.+....+ ++.
T Consensus 79 ~~~L~~~~~~-~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~------ 147 (425)
T 2ffh_A 79 YEALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL------ 147 (425)
T ss_dssp HHHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH------
T ss_pred HHHHHHHhCC-Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH------
Confidence 3456677743 22 678888 89999999999999999999999999999999999887765421111 110
Q ss_pred CCCCCCcccHHHHhHhCccccCCCccHHH-HHHHHHHc---CCCchhhcCCCCCCC---hhHHHHHHHHHHHcCCCCeEE
Q 022337 145 QIPALFEGTVVDNIRYGPQLRGKKLTENE-VYKLLSLA---DLDSSFLNKTGGEIS---VGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 145 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~-~~~~l~~~---~l~~~~~~~~~~~LS---gGqkQRv~iAral~~~p~ill 217 (298)
..+..-+.....+...+... +.++++.+ +.+--+.|..+ .++ .-+.+...+++++..++-+++
T Consensus 148 ---------~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG-~l~~d~~l~~el~~i~~~~~pd~vlLV 217 (425)
T 2ffh_A 148 ---------LGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAG-RLQIDEPLMGELARLKEVLGPDEVLLV 217 (425)
T ss_dssp ---------HHHHHTCCEEECCTTCCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ---------hcccCCccEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC-cccccHHHHHHHHHhhhccCCceEEEE
Confidence 01111111000000011111 12333322 22212445444 232 346677788888877777888
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH---------HHHHhhcCEEEEEeCCEE
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI---------KQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~---------~~~~~~~d~v~vl~~G~i 273 (298)
+| ++++.|... .++.+.+..+.+-|++|+-- +......-.|.++..|+-
T Consensus 218 vD-a~tgq~av~------~a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~ 275 (425)
T 2ffh_A 218 LD-AMTGQEALS------VARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEK 275 (425)
T ss_dssp EE-GGGTTHHHH------HHHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-ccchHHHHH------HHHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCC
Confidence 88 456655442 23333333466777777631 122333456777766653
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=4e-08 Score=91.86 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=36.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
+++.+++|+|++|||||||++.|+|.+.|+.|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 467899999999999999999999999888888888776543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-07 Score=84.91 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=81.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCC-ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPP-SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ 163 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~-~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~ 163 (298)
-+++|+++.|.||+|||||||+..++.-. .|. .| |. ..++.|+.-+..+-+..+.+...-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~----------~~~vlyi~~e~~~~~~~l~~~~~~--- 164 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL----------SGKAVYIDTEGTFRWERIENMAKA--- 164 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC----------SCEEEEEESSSCCCHHHHHHHHHH---
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC----------CCeEEEEECCCCCCHHHHHHHHHH---
Confidence 58999999999999999999999887643 331 01 00 012333322221111122221110
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChh-HHHHHHHHHHHc---CCCCeEEEeCcCCCCCH--------HH--
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVG-QAQRVALARTLA---NEPEVLLLDEPTSALDP--------IS-- 229 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG-qkQRv~iAral~---~~p~illLDEPts~LD~--------~~-- 229 (298)
.+.. .+ ++++.+-+ . ...+.. +.+.+..++.++ .+|+++++|+.++-... ..
T Consensus 165 -~g~~--~~---~~~~~l~~----~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~ 230 (324)
T 2z43_A 165 -LGLD--ID---NVMNNIYY----I----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQ 230 (324)
T ss_dssp -TTCC--HH---HHHHTEEE----E----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHH
T ss_pred -hCCC--HH---HHhccEEE----E----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHH
Confidence 0111 11 11121111 0 112232 235677777777 67999999999876532 11
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEccCHHH----------------HHhhcCEEEEEeC
Q 022337 230 --TQNIEDVLVKLKKKHGMTIVMVSHSIKQ----------------IQRIADVVCLLVN 270 (298)
Q Consensus 230 --~~~~~~~l~~l~~~~g~tii~itHd~~~----------------~~~~~d~v~vl~~ 270 (298)
..+++..|++++++.+.+||++.|-... +...+|.++.++.
T Consensus 231 ~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 231 QKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 2455666777777779999999885432 3456777787763
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-07 Score=86.03 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=37.9
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh--cCCcEEEEEccCHHHHHhh
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKK--KHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~--~~g~tii~itHd~~~~~~~ 261 (298)
.+|.+|++||+... |+.....+...+.++.. ..+.++|++||+.+....+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 56889999999875 88888888887766543 1378999999998655443
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-08 Score=89.08 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=47.4
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC------CHHH----HhcceEEEeCCCCCC
Q 022337 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL------DVLS----LRRKVGMLFQIPALF 150 (298)
Q Consensus 83 isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~------~~~~----~~~~ig~v~Q~~~l~ 150 (298)
-+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+++...+ .... .++.+++++|.+.++
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 3445689999999999999999999999998 78999998765311 1111 134578888865443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-09 Score=99.53 Aligned_cols=136 Identities=16% Similarity=0.174 Sum_probs=77.7
Q ss_pred EEEEeCCCCcceeeeeEEEeCCc------EEEEEcCCCccHHHHHHHHhcCCC--CCccEEEECCEeCCCCCHHHHhcce
Q 022337 69 LRKESDDGAPILKGVNMEIPKGV------IMGIIGPSGSGKSTLLRALNRLWE--PPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 69 l~~~y~~~~~vL~~isl~i~~Ge------~~~iiG~nGsGKSTLlk~l~gl~~--p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
+++.| ++.+.|++++..+.+++ ++||+||||||||||+++|.+++. |++|.|
T Consensus 66 l~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v------------------- 125 (321)
T 3tqc_A 66 LSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV------------------- 125 (321)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE-------------------
T ss_pred HHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE-------------------
Confidence 34445 35678999999998887 999999999999999999999987 445544
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+++.++...++....+..... ...+. ..+.+...+.++.+.-...-...+ .+|.+..+|+.-+...+..|+++|+
T Consensus 126 ~~i~~D~f~~~~~~l~~~~~~-~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIv 202 (321)
T 3tqc_A 126 EVITTDGFLYSNAKLEKQGLM-KRKGFPESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVIL 202 (321)
T ss_dssp EEEEGGGGBCCHHHHHHTTCG-GGTTSGGGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEE
T ss_pred EEEeecccccchhhhhhHHHH-hhccCcccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEE
Confidence 344444332222222211100 00111 112333444443331111001111 2344444444333445678999999
Q ss_pred eCcCCCCCH
Q 022337 219 DEPTSALDP 227 (298)
Q Consensus 219 DEPts~LD~ 227 (298)
+.+..-.|+
T Consensus 203 EGi~lL~~~ 211 (321)
T 3tqc_A 203 EGLNILQTG 211 (321)
T ss_dssp ECTTTTCCC
T ss_pred Ecccccccc
Confidence 999988776
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-08 Score=85.97 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=40.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~ 132 (298)
..++|++++|+|+||||||||++.|++++++..|.|.+.+.+....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 36789999999999999999999999999988999988776654433
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-07 Score=88.78 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
++.+++++|||||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5889999999999999999999999998888888866664
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-07 Score=89.87 Aligned_cols=160 Identities=22% Similarity=0.207 Sum_probs=85.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC------------CCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHh
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE------------PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNI 158 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni 158 (298)
.++|+|+||||||||++.|+|... |.+|.+.++|+++.-++..-.++..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999864 6789999999875433222233445555566555543 555666
Q ss_pred HhCc------ccc-CCCccHHHHHHHHHHcCCCch----hhcCCC-CCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCC
Q 022337 159 RYGP------QLR-GKKLTENEVYKLLSLADLDSS----FLNKTG-GEISVGQAQRVALARTLA--NEPEVLLLDEPTSA 224 (298)
Q Consensus 159 ~~~~------~~~-~~~~~~~~~~~~l~~~~l~~~----~~~~~~-~~LSgGqkQRv~iAral~--~~p~illLDEPts~ 224 (298)
...- ... +....+.++.+.+...+..-- ..|... .+-+.-+- .-.+++.+. ...+++ ++|+
T Consensus 262 ~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~SA 336 (439)
T 1mky_A 262 EKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLI----FTSA 336 (439)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCEE----ECBT
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcEE----EEEC
Confidence 5431 111 112223445555665554210 111110 01111111 113445443 344444 5999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH
Q 022337 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
++-.+..++++.+.+..++. +.-+.|+.++.+
T Consensus 337 ~~g~gv~~l~~~i~~~~~~~--~~~i~t~~ln~~ 368 (439)
T 1mky_A 337 DKGWNIDRMIDAMNLAYASY--TTKVPSSAINSA 368 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHH--TCCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhh--cccCCHHHHHHH
Confidence 99999999999988765432 234567776544
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-08 Score=92.25 Aligned_cols=147 Identities=17% Similarity=0.189 Sum_probs=84.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC-CEeCCCCCHHHHhcceEEEeCCCCCC--cccHHHHhHhCcccc
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD-GRDITDLDVLSLRRKVGMLFQIPALF--EGTVVDNIRYGPQLR 165 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~-g~~i~~~~~~~~~~~ig~v~Q~~~l~--~~tv~eni~~~~~~~ 165 (298)
++.+++|+|++|||||||++.|.|.. +.+. +..-. ...+..|+++++..-+ -.|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDTp----------- 64 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDTP----------- 64 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESSS-----------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEECc-----------
Confidence 44589999999999999999999963 2221 11101 1123467777654211 0111
Q ss_pred CCC-ccHHHHHH--------HHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCCHHH-HHHH
Q 022337 166 GKK-LTENEVYK--------LLSLADLDSSFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDPIS-TQNI 233 (298)
Q Consensus 166 ~~~-~~~~~~~~--------~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD~~~-~~~~ 233 (298)
|.. .......+ .++.+++--...+. ..+|+|++ .+++++. ..|.++++ +.+|... +..+
T Consensus 65 G~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp SCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred CCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 100 00001111 11111111011222 23898886 5566666 78999999 7899877 6778
Q ss_pred HHHHHHHHhcCCc--EEEEEccCHHHHHhhcCEEE
Q 022337 234 EDVLVKLKKKHGM--TIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 234 ~~~l~~l~~~~g~--tii~itHd~~~~~~~~d~v~ 266 (298)
.+.+.++.+..|. .+.+++|+-+.+..++|.+.
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 8888888765453 56677787766666666653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.2e-08 Score=80.63 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=39.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc-ceEEEeCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR-KVGMLFQI 146 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~-~ig~v~Q~ 146 (298)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++.. ...+++ .+|+.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 469999999999999999999999975 889998877642 112222 35665554
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-07 Score=80.54 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=30.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEE
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVF 122 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~ 122 (298)
++|++++|+||||||||||++.|++.++| ..+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 58999999999999999999999999987 344443
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.6e-07 Score=81.88 Aligned_cols=132 Identities=12% Similarity=0.127 Sum_probs=81.5
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
+.+.|+.+.--+++|+++.|.|++|+|||||+..++.-.-- .| ..+.|+.=+ .+..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE-----~s~~ 109 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE-----MGKK 109 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----SCHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----CCHH
Confidence 34567777766999999999999999999999888752110 01 123333322 1111
Q ss_pred HHhHhCccccCCCccHHHHHHHHH-HcCCCc-hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHH
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLS-LADLDS-SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~-~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~ 233 (298)
+. ...++. ..+++- .+.+.. ..||.+++||+..|...+.++++++.|+|... ..++
T Consensus 110 ~l----------------~~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i 167 (315)
T 3bh0_A 110 EN----------------IKRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYI 167 (315)
T ss_dssp HH----------------HHHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHH
T ss_pred HH----------------HHHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHH
Confidence 11 111111 123321 121111 13899999999999999888999999998643 3445
Q ss_pred HHHHHHHHhcCCcE--EEEEcc
Q 022337 234 EDVLVKLKKKHGMT--IVMVSH 253 (298)
Q Consensus 234 ~~~l~~l~~~~g~t--ii~itH 253 (298)
...++++.++.|.. +|+|-|
T Consensus 168 ~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 168 WSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHhcCCCCeEEEEeC
Confidence 66666666555777 888854
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-07 Score=78.59 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=29.3
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
++--++++|++++|+|++|||||||.+.|++.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3444678899999999999999999999999874
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-07 Score=93.58 Aligned_cols=60 Identities=18% Similarity=0.338 Sum_probs=48.8
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD 127 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~ 127 (298)
++++.+.|. +..+++++++++ +|+.++|+||||+|||||+|+|++.+.+..|.|.+.|..
T Consensus 86 ~~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 86 LEKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp CHHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 344555552 345788899988 899999999999999999999999999999999887743
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.2e-06 Score=74.19 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH----------HHHHHHHHHHHHHhc---CCcEEEEEccCHHH----H
Q 022337 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPI----------STQNIEDVLVKLKKK---HGMTIVMVSHSIKQ----I 258 (298)
Q Consensus 196 SgGqkQRv~iAral~~~p~illLDEPts~LD~~----------~~~~~~~~l~~l~~~---~g~tii~itHd~~~----~ 258 (298)
++++++|..++++...+|.+|++||+.+-++.. ....++..+...... .+..+|.+|++++. +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 357778888888888999999999998766532 223344444433211 24567888887532 2
Q ss_pred HhhcCEEEEE
Q 022337 259 QRIADVVCLL 268 (298)
Q Consensus 259 ~~~~d~v~vl 268 (298)
.+-+++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 2235555444
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-07 Score=88.22 Aligned_cols=65 Identities=23% Similarity=0.281 Sum_probs=53.6
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
++.+++.+.|. ...+++++++.+.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+..
T Consensus 31 ie~~~~~~~~~-~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 31 VESRHPRHQAL-STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHCCCHHHHHH-HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred hhcCCchhhhH-HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 44445555552 446899999999999999999999999999999999999888888888766653
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.8e-07 Score=85.15 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPP 117 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~ 117 (298)
..+..+.|.||+|+|||||++.+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999877553
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.4e-07 Score=87.63 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=47.9
Q ss_pred eEEEEeEEEEeCCCCccee--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 63 KFRVRELRKESDDGAPILK--------------GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~--------------~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.++|+++.|+.++.+|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3778899999987778999 999999999999999999999999999999875
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.1e-07 Score=73.78 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
.|++++|+||||||||||+++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 55654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.5e-07 Score=76.51 Aligned_cols=40 Identities=35% Similarity=0.483 Sum_probs=33.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc--EEEECCEeC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG--TVFLDGRDI 128 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G--~I~i~g~~i 128 (298)
.+|++++|+|++||||||+.+.|++.++| .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666776544
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.4e-05 Score=68.30 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=23.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCcc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSG 119 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G 119 (298)
.++|+|++|+|||||++.|+|-..+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4799999999999999999997766555
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.8e-07 Score=87.05 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=45.6
Q ss_pred CCCCeEEEeCcCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEccCH-HHHHhhcCEEEE-EeCCEEEEeeCh
Q 022337 211 NEPEVLLLDEPTSALDP-ISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCL-LVNGEIVEVLKP 279 (298)
Q Consensus 211 ~~p~illLDEPts~LD~-~~~~~~~~~l~~l~~~~g~tii~itHd~-~~~~~~~d~v~v-l~~G~i~~~g~~ 279 (298)
.+|++|++||+..-.+. ..+..++..+.++.+ .|+.+|++||+. ..+..+.+++.- +..|.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 48999999999877664 678889999988765 488999999973 322222222221 345666555544
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.1e-06 Score=68.68 Aligned_cols=31 Identities=45% Similarity=0.584 Sum_probs=25.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666665 999999999999999999874
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-06 Score=74.14 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=39.6
Q ss_pred EEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--------CCCCccEEEECCEe
Q 022337 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--------WEPPSGTVFLDGRD 127 (298)
Q Consensus 71 ~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--------~~p~~G~I~i~g~~ 127 (298)
+.|++-..+++++|++.+++. ++++|++|+|||||++.+.+- ..++.+.+.++|..
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp ------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 456554578999999988885 689999999999999999872 23345667666643
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.9e-05 Score=74.00 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=46.8
Q ss_pred HHHHHHHHHc--CCCCeEEEeCcCCCCCHH-------------HHHHHHHH---HHHHHhcCCcEEEEEccCHH------
Q 022337 201 QRVALARTLA--NEPEVLLLDEPTSALDPI-------------STQNIEDV---LVKLKKKHGMTIVMVSHSIK------ 256 (298)
Q Consensus 201 QRv~iAral~--~~p~illLDEPts~LD~~-------------~~~~~~~~---l~~l~~~~g~tii~itHd~~------ 256 (298)
|-..+++.++ .+++++++|++++-.... ..+.+.+. |..++++.+.+||++.|-..
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3445566664 679999999999866321 11233334 44445667999999988532
Q ss_pred ----------HHHhhcCEEEEEeCCEEE
Q 022337 257 ----------QIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 257 ----------~~~~~~d~v~vl~~G~i~ 274 (298)
.+..+||-++.++..+..
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~ 235 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAV 235 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeee
Confidence 355678988888766543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2e-06 Score=75.56 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=33.0
Q ss_pred ceeeeeEEEe---CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC
Q 022337 79 ILKGVNMEIP---KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124 (298)
Q Consensus 79 vL~~isl~i~---~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~ 124 (298)
-|.++|+++. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4677777776 9999999999999999999999999988 6677554
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.2e-06 Score=74.99 Aligned_cols=149 Identities=13% Similarity=0.076 Sum_probs=80.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCcccc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLR 165 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~ 165 (298)
+.+|+.+++.||+||||||++.++..-.....| ....++++++.|.... .++.+++.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----------------RAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----------------CCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 467999999999999999998876431110000 0134677888776543 37777776432110
Q ss_pred -CCCccHHHHHHHHHHcCCCchhh---cCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC-CCCHHHHHHHHHHHHHH
Q 022337 166 -GKKLTENEVYKLLSLADLDSSFL---NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKL 240 (298)
Q Consensus 166 -~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts-~LD~~~~~~~~~~l~~l 240 (298)
+..... ..... ... +..+--.+.|...+.. +..+.+.+++++||.-. ++|.......++.+...
T Consensus 137 ~~~~~g~--------~~~~~-~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 137 PGKSCGY--------SVRFE-SILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp TTSSEEE--------EETTE-EECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred cCceEEE--------eechh-hccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 000000 00000 000 0011123556665553 34688999999999976 57776664444444443
Q ss_pred HhcCCcEEEEE-ccCHHHHHhhcC
Q 022337 241 KKKHGMTIVMV-SHSIKQIQRIAD 263 (298)
Q Consensus 241 ~~~~g~tii~i-tHd~~~~~~~~d 263 (298)
..+ -.+++++ |.+.+...++.+
T Consensus 206 ~~~-~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 206 YPE-VRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp CTT-SEEEEEECSSCCHHHHHHTT
T ss_pred CCC-CeEEEEecCCCHHHHHHHcC
Confidence 332 2344443 566555555544
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=6.6e-06 Score=74.83 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=26.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.+.++..+.|.||+|+|||||++.|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456788999999999999999999999865
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.5e-07 Score=77.06 Aligned_cols=44 Identities=32% Similarity=0.394 Sum_probs=38.2
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc--EEEECCEeC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG--TVFLDGRDI 128 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G--~I~i~g~~i 128 (298)
+.+++|.+++|+|++||||||+.+.|++.+.|+.| .+.++|..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999988888 888876443
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-05 Score=76.97 Aligned_cols=176 Identities=16% Similarity=0.159 Sum_probs=97.9
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhcc-eEEEeCCCCCCcccH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVFLDGRDITDLDVLSLRRK-VGMLFQIPALFEGTV 154 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~-ig~v~Q~~~l~~~tv 154 (298)
.+.|+.+.--+++|+++.|.|++|+|||||...++.-.....| .|.+..- +.+..++..+ ++.. ..+-...+
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl---E~~~~~l~~R~~~~~---~~i~~~~l 260 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL---EMPAAQLTLRMMCSE---ARIDMNRV 260 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES---SSCHHHHHHHHHHHH---TTCCTTTC
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC---CCCHHHHHHHHHHHH---cCCCHHHH
Confidence 3456666655899999999999999999999888765432222 2322111 1233222211 1000 00000000
Q ss_pred HHHhHhCccccCCC-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCCH----
Q 022337 155 VDNIRYGPQLRGKK-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDP---- 227 (298)
Q Consensus 155 ~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD~---- 227 (298)
+ -+ ... .+.+++.++++.+.-..-+.+. ...+|..+. .+.+|.+. .+|+++++|..+.-.+.
T Consensus 261 ~----~g----~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~ 329 (444)
T 2q6t_A 261 R----LG----QLTDRDFSRLVDVASRLSEAPIYIDD-TPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGK 329 (444)
T ss_dssp C----GG----GCCHHHHHHHHHHHHHHHTSCEEEEC-CTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC----
T ss_pred h----CC----CCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCC
Confidence 0 00 011 1123344444433211111222 345676654 44566665 57999999998764432
Q ss_pred ------HHHHHHHHHHHHHHhcCCcEEEEEccCH-------------H------HHHhhcCEEEEEe
Q 022337 228 ------ISTQNIEDVLVKLKKKHGMTIVMVSHSI-------------K------QIQRIADVVCLLV 269 (298)
Q Consensus 228 ------~~~~~~~~~l~~l~~~~g~tii~itHd~-------------~------~~~~~~d~v~vl~ 269 (298)
....++...|+.++++.+.+||+++|-- + .+...||.|++|.
T Consensus 330 ~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 330 SGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 1224677778888888899999999821 1 3567899999995
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.3e-05 Score=69.29 Aligned_cols=163 Identities=12% Similarity=0.106 Sum_probs=84.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCCccEEE-ECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhH-hCc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPPSGTVF-LDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR-YGP 162 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~-i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~-~~~ 162 (298)
-+++|+++.|.||+|+|||||...++.-. .|. |..+ +.|....... ..++.|+.-+..+-+..+.+... ++
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~-~~~~~~~~~~~gg~~----~~~v~yi~~e~~~~~~~l~~~~~~~g- 167 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPE-FLFYDEEAVSKGEVA----QPKAVYIDTEGTFRPERIMQMAEHAG- 167 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGG-GEECCTTTSCTTTTS----SEEEEEEESSSCCCHHHHHHHHHHHT-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccc-cccccccccccCCCC----CceEEEEECCCCCCHHHHHHHHHHcC-
Confidence 47899999999999999999998887521 121 1100 0000000000 02344544433221222222211 11
Q ss_pred cccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH-HHHHHHHHHHc---CCCCeEEEeCcCCCCC--------HHH-
Q 022337 163 QLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ-AQRVALARTLA---NEPEVLLLDEPTSALD--------PIS- 229 (298)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kQRv~iAral~---~~p~illLDEPts~LD--------~~~- 229 (298)
.+ .+ ++++.+-+ . ...+.-+ .+-+..++.++ .+++++++|.-++-.. ...
T Consensus 168 ----~~--~~---~~~~~l~~----~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r 230 (322)
T 2i1q_A 168 ----ID--GQ---TVLDNTFV----A----RAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAER 230 (322)
T ss_dssp ----CC--HH---HHHHTEEE----E----ECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHH
T ss_pred ----CC--HH---HHhcCEEE----E----eCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHH
Confidence 11 11 11121111 0 0112222 23344444554 4689999998875431 111
Q ss_pred ---HHHHHHHHHHHHhcCCcEEEEEccCH----------------HHHHhhcCEEEEEeCC
Q 022337 230 ---TQNIEDVLVKLKKKHGMTIVMVSHSI----------------KQIQRIADVVCLLVNG 271 (298)
Q Consensus 230 ---~~~~~~~l~~l~~~~g~tii~itHd~----------------~~~~~~~d~v~vl~~G 271 (298)
..+++..|++++++.+.+||++.|-. ..+...+|.++.++..
T Consensus 231 ~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 231 QQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 24556667777777899999988732 1366789999999743
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=9.7e-06 Score=68.15 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=27.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--------CCCCccEEEECCEe
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--------WEPPSGTVFLDGRD 127 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--------~~p~~G~I~i~g~~ 127 (298)
.+++++|++.++. .++++|++|+|||||++.+.+- ..++.+.+.++|..
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 4789999998887 6789999999999999999982 22335666666643
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.84 E-value=1.2e-05 Score=66.52 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999865
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.84 E-value=1.7e-06 Score=79.11 Aligned_cols=61 Identities=21% Similarity=0.216 Sum_probs=49.8
Q ss_pred EEeEEEEeCCCCcceee-eeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC
Q 022337 66 VRELRKESDDGAPILKG-VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~-isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~ 130 (298)
.+++.+.|++. . ++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.|..+
T Consensus 77 ~~~l~~~~~~~-~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 77 YDELSNLFGGD-K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHTTCS-C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHhccc-c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 44566667432 2 56 888876 99999999999999999999999999888999998877654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.5e-05 Score=65.22 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..+.|.||+|+|||||++.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999997553
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2e-05 Score=67.68 Aligned_cols=30 Identities=47% Similarity=0.626 Sum_probs=24.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHh
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3456666665 99999999999999999885
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.79 E-value=4.4e-07 Score=83.82 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=43.7
Q ss_pred CCCcceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe
Q 022337 75 DGAPILKGVNMEIPKGVI--MGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD 127 (298)
Q Consensus 75 ~~~~vL~~isl~i~~Ge~--~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~ 127 (298)
+...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 345689999999999998 99999999999999999999987776654443333
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.9e-06 Score=80.82 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=37.2
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
..+.+.|+++.|. ++.++++++|+| +|+|+||+|||||++.|.|...+..|.+...+
T Consensus 16 ~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3588889988884 567899999987 99999999999999999988666555544333
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.75 E-value=8.9e-06 Score=69.92 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.4e-06 Score=68.37 Aligned_cols=39 Identities=38% Similarity=0.596 Sum_probs=32.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-EECC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDG 125 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-~i~g 125 (298)
..+|.+++|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45799999999999999999999999987777766 3443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.8e-05 Score=72.23 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=30.9
Q ss_pred CCCCeEEEeCcCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 022337 211 NEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253 (298)
Q Consensus 211 ~~p~illLDEPts-~LD~~~~~~~~~~l~~l~~~~g~tii~itH 253 (298)
.+|.+|++||+-. .-+......+...+..+.+. +..+|++++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 4699999999865 23447788888888887654 666666665
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=4.2e-05 Score=62.53 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=1.8e-05 Score=66.45 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=26.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999875
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.67 E-value=4.3e-06 Score=76.62 Aligned_cols=42 Identities=7% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
++.++++|| ...+++.....+.+.+.+... ...+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~--~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG--VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT--TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC--CceEEEEeCchh
Confidence 678999999 678999999889988887643 455677776654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.7e-05 Score=64.53 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.62 E-value=2.2e-05 Score=66.59 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=2.9e-05 Score=73.69 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=34.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcC-----------CCCCccEEEECCE
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRL-----------WEPPSGTVFLDGR 126 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl-----------~~p~~G~I~i~g~ 126 (298)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3567888999999999999999999998 6788898887663
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.61 E-value=9.5e-05 Score=65.85 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.++..+.|.||+|+|||||++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998854
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.61 E-value=2.6e-05 Score=66.54 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=26.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.58 E-value=6e-05 Score=70.59 Aligned_cols=44 Identities=32% Similarity=0.525 Sum_probs=33.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
..+..|+..-.. .+++..+++.+| +.+|+|||||||||++..|.
T Consensus 3 M~l~~L~l~nFr---~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK---SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc---cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 445555543211 347788888886 89999999999999999986
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=1.1e-05 Score=68.61 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=32.4
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 4688999999866 7888888777777543 23677888888765
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.55 E-value=1.5e-05 Score=67.75 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
..+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999999865 5556665444
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.50 E-value=2e-05 Score=69.73 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=34.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
...++.++.|+|++||||||+.+.|+..+. .|.+.+++..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 566788999999999999999999998764 356778876553
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.48 E-value=3.4e-05 Score=64.99 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=29.5
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEe
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRD 127 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~ 127 (298)
.+++|+|+||||||||++.|.+.+++. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999876543 3777776544
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0022 Score=60.15 Aligned_cols=140 Identities=21% Similarity=0.276 Sum_probs=77.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
-+++|+++.|.||.|+|||||...++.-.....+ .+.|+.-+..+-+ .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~-------------------~vlyi~~E~s~~~--~~---------- 118 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG-------------------TCAFIDAEHALDP--VY---------- 118 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC-------------------CEEEEESSCCCCH--HH----------
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC-------------------eEEEEECCCChhH--HH----------
Confidence 3789999999999999999998777643211111 2344433321111 00
Q ss_pred CCCccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCC-----H--------HH
Q 022337 166 GKKLTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALD-----P--------IS 229 (298)
Q Consensus 166 ~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD-----~--------~~ 229 (298)
++.+|++. .+.-..+. + + .|-+.+++.++ .+++++++|..++=.- - ..
T Consensus 119 ------------a~~~g~d~~~l~i~~~~--~-~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~ 182 (366)
T 1xp8_A 119 ------------ARALGVNTDELLVSQPD--N-G-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQ 182 (366)
T ss_dssp ------------HHHTTCCGGGCEEECCS--S-H-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHH
T ss_pred ------------HHHcCCCHHHceeecCC--c-H-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHH
Confidence 11122210 00000111 2 2 24455666665 4699999999987541 0 11
Q ss_pred HHHHHHHHHHH---HhcCCcEEEEEccCHHH----------------HHhhcCEEEEEeCCE
Q 022337 230 TQNIEDVLVKL---KKKHGMTIVMVSHSIKQ----------------IQRIADVVCLLVNGE 272 (298)
Q Consensus 230 ~~~~~~~l~~l---~~~~g~tii~itHd~~~----------------~~~~~d~v~vl~~G~ 272 (298)
.+.+.+.++++ +++.+.+||++.|-... +..+||-++.++.++
T Consensus 183 ~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 183 ARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 13344555444 57779999999885421 456788888887544
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.46 E-value=6.1e-05 Score=62.66 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPP 117 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~ 117 (298)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47899999999999999999975443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=1.8e-05 Score=74.03 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=33.7
Q ss_pred cceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHhcCC
Q 022337 78 PILKGVNMEIPKGVI--MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~--~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999999 9999999999999999999864
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.45 E-value=5.2e-05 Score=66.75 Aligned_cols=46 Identities=30% Similarity=0.565 Sum_probs=31.3
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
.++++++.+++| +.|+||+|+|||||++.|++..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 455566666666 8899999999999999999976422 366666554
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.39 E-value=7.2e-05 Score=62.23 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999985
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00018 Score=66.24 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00064 Score=62.70 Aligned_cols=59 Identities=10% Similarity=0.229 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHH--c--CCCCeEEEeCcCCCCC-----H----------HHHHHHHHHHHH---HHhcCCcEEEEEccCH
Q 022337 198 GQAQRVALARTL--A--NEPEVLLLDEPTSALD-----P----------ISTQNIEDVLVK---LKKKHGMTIVMVSHSI 255 (298)
Q Consensus 198 GqkQRv~iAral--~--~~p~illLDEPts~LD-----~----------~~~~~~~~~l~~---l~~~~g~tii~itHd~ 255 (298)
++++.+.++.++ + .+|++++.|--++=.- - ...+.+-+.|++ ++++.+.++|++-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 455546666665 3 3699999998766431 0 122334444443 5667799999999986
Q ss_pred H
Q 022337 256 K 256 (298)
Q Consensus 256 ~ 256 (298)
.
T Consensus 173 k 173 (333)
T 3io5_A 173 E 173 (333)
T ss_dssp -
T ss_pred e
Confidence 5
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=64.33 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
-.+|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999996
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0012 Score=64.12 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=46.5
Q ss_pred HHHHHHHHHc--CCCCeEEEeCcCCCCC-------H-HHHHHHHHHHHHHHhcCCcEEEEEccCH---------------
Q 022337 201 QRVALARTLA--NEPEVLLLDEPTSALD-------P-ISTQNIEDVLVKLKKKHGMTIVMVSHSI--------------- 255 (298)
Q Consensus 201 QRv~iAral~--~~p~illLDEPts~LD-------~-~~~~~~~~~l~~l~~~~g~tii~itHd~--------------- 255 (298)
+-++.++.+. .+|+++++|=-+ .+. . ....++...|++++++.+.+||+++|--
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEccch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 4444555554 479999999443 321 1 2334677778888888899999998843
Q ss_pred -------HHHHhhcCEEEEEe
Q 022337 256 -------KQIQRIADVVCLLV 269 (298)
Q Consensus 256 -------~~~~~~~d~v~vl~ 269 (298)
..+...||-|+.|+
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEE
Confidence 13567799999986
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=4e-05 Score=67.62 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHh---cCCCCCccEE
Q 022337 90 GVIMGIIGPSGSGKSTLLRALN---RLWEPPSGTV 121 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~---gl~~p~~G~I 121 (298)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 3489999999999999999999 5544555555
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.28 E-value=6.8e-05 Score=70.49 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=45.7
Q ss_pred CCCCeEEEeCcCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH------------hhcCEEEEEeCC
Q 022337 211 NEPEVLLLDEPTSALD---PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ------------RIADVVCLLVNG 271 (298)
Q Consensus 211 ~~p~illLDEPts~LD---~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~------------~~~d~v~vl~~G 271 (298)
..|.++++||.=.-++ +.....+.+.+++..+ .|..++++||+++.+. ..|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3588999999988884 6677788888888755 5999999999997653 345666666543
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0016 Score=62.50 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=28.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
+-|+.+.--+.+|+++.|.|++|+|||||.--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34555443589999999999999999999877765
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00014 Score=59.26 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0015 Score=71.87 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=80.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-EECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
+++|+++.|.||+|+|||||+..++.......|.+ +++++.... .+ +
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~----ql------------------~---------- 776 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PI------------------Y---------- 776 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC----HH------------------H----------
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHH----HH------------------H----------
Confidence 89999999999999999999999987554333333 223322100 00 0
Q ss_pred CCCccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCC-H------------HH
Q 022337 166 GKKLTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALD-P------------IS 229 (298)
Q Consensus 166 ~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD-~------------~~ 229 (298)
.+.+|++. .+.-..+. +. .+-...++.++ .+|+++++|+..+-.. . ..
T Consensus 777 ------------A~~lGvd~~~L~i~~~~--~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q 840 (1706)
T 3cmw_A 777 ------------ARKLGVDIDNLLCSQPD--TG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 840 (1706)
T ss_dssp ------------HHHTTCCGGGCEEECCS--SH--HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHH
T ss_pred ------------HHHcCCChhheEEecCC--cH--HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHH
Confidence 11111110 00000011 11 23344444443 5799999999987552 1 12
Q ss_pred HHHHHHHHHH---HHhcCCcEEEEEccCH----------------HHHHhhcCEEEEEeCCEE
Q 022337 230 TQNIEDVLVK---LKKKHGMTIVMVSHSI----------------KQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 230 ~~~~~~~l~~---l~~~~g~tii~itHd~----------------~~~~~~~d~v~vl~~G~i 273 (298)
.+++.+.+++ ++++.|.+||+++|-. ..+...||-++.++.++.
T Consensus 841 ~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~~ 903 (1706)
T 3cmw_A 841 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 903 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEeccc
Confidence 2345445544 4666799999998821 246778899999965543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00019 Score=59.23 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998664
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0015 Score=56.34 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=43.5
Q ss_pred cCCCCeEEEeCcCC----CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH----------HHHhhcCEEEEEe
Q 022337 210 ANEPEVLLLDEPTS----ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK----------QIQRIADVVCLLV 269 (298)
Q Consensus 210 ~~~p~illLDEPts----~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~----------~~~~~~d~v~vl~ 269 (298)
-.+|+++++|--+. .-|.....++...|++++++.|.++++++|-.. .+...||-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45789999996432 124556677888888888888999999998532 2345789988875
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00039 Score=57.90 Aligned_cols=36 Identities=33% Similarity=0.563 Sum_probs=26.8
Q ss_pred EEEEEcCCCccHHHHHHHHh-cC----CCCCcc----EEEECCEe
Q 022337 92 IMGIIGPSGSGKSTLLRALN-RL----WEPPSG----TVFLDGRD 127 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~-gl----~~p~~G----~I~i~g~~ 127 (298)
.++|+|++|+|||||++.+. +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 48899999999999996554 44 556766 56666654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=5.3e-05 Score=64.43 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=24.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
+++|.|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998876443333
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00019 Score=60.24 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00025 Score=58.88 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00021 Score=60.02 Aligned_cols=32 Identities=44% Similarity=0.567 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR 126 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~ 126 (298)
..+++|+|++||||||+.+.|+.. |-..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 357999999999999999999985 66666543
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0012 Score=52.95 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..+.-+.|.||+|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 4556688999999999999999987654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00025 Score=57.49 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 022337 92 IMGIIGPSGSGKSTLLRAL 110 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l 110 (298)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00026 Score=60.61 Aligned_cols=32 Identities=38% Similarity=0.534 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
++-+++|.|++||||||+.+.|+.+ |...++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999983 4455543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00027 Score=58.89 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999998643
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00043 Score=64.89 Aligned_cols=36 Identities=42% Similarity=0.639 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc-----------CCCCCccEEEECC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNR-----------LWEPPSGTVFLDG 125 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~g-----------l~~p~~G~I~i~g 125 (298)
|-.++|+|.+|+|||||++.|+| -..|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 4567888888766
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0019 Score=59.88 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+...+.|.||.|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356678999999999999999998754
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00077 Score=62.26 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
-+++|..+.|.||.|+|||||...++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 578888999999999999999999875
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00021 Score=59.22 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999843
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00029 Score=62.46 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|+||||||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00037 Score=57.83 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998643
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00032 Score=59.63 Aligned_cols=21 Identities=57% Similarity=0.765 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
+.|+||||||||||++.|..-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998754
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00032 Score=58.11 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999986
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00045 Score=58.11 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00071 Score=59.15 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=37.9
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC----------HHHHHhhcCEEEEE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS----------IKQIQRIADVVCLL 268 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd----------~~~~~~~~d~v~vl 268 (298)
.+|+++++||.-. |+.. +.+.+..+++. |.+||++-|+ ...+..+||+|.-|
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 3589999999964 6643 44455666554 8999999992 45566799999875
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0049 Score=59.21 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i 123 (298)
++.+++++|++|+||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999999877644334544
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00039 Score=57.42 Aligned_cols=23 Identities=52% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0004 Score=62.79 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=28.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
..|.++.|.||+||||||+.+.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4567899999999999999999987542 35677765
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00046 Score=56.61 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00049 Score=57.38 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00053 Score=57.78 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999876543
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00055 Score=57.90 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.+|-+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00026 Score=68.04 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHcCCCCeEEEeCcCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH
Q 022337 198 GQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 198 GqkQRv~iAral~~~p~illLDEPts-~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
.|.+....+...+.+++++|+..... ++... ...+.+.+++ .++.+|++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~----~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR----TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT----CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH----cCCCEEEEEECccch
Confidence 47777778888888899877776654 45444 4455555543 377888888877654
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00062 Score=57.60 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++|-+++|.|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999854
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00056 Score=60.86 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=38.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
|||+.+..+..++++.+.+..++...+..+.+|..+.+...++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHH
Confidence 99999999999999999888765555666778888888888877643
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00065 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0014 Score=63.56 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=58.3
Q ss_pred cCCCCCCChhHHHHHHHHHHHc--C---------------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 022337 189 NKTGGEISVGQAQRVALARTLA--N---------------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~--~---------------~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~i 251 (298)
.+..+.+||||+|-..+|.+-+ + .-.++++||+ +-+|....+..+++++++ |.-+|++
T Consensus 374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliia 448 (483)
T 3euj_A 374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIA 448 (483)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEE
T ss_pred ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEE
Confidence 3446789999999655444332 2 2257999999 999999999999999977 7889999
Q ss_pred ccCHHHHHhhcCEEEEEe
Q 022337 252 SHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 252 tHd~~~~~~~~d~v~vl~ 269 (298)
|=+ .+..++|.++.+-
T Consensus 449 tP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 449 APE--NISPERGTTYKLV 464 (483)
T ss_dssp ESS--SCCCSSSEEEECC
T ss_pred Ccc--hhhhccCceEEEE
Confidence 987 6677889988764
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00041 Score=62.31 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
..+.|.||+|+||||+.+.|++.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5899999999999999999999887766643
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00064 Score=56.31 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.|.|++||||||+.+.|+.-+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998755
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00038 Score=58.36 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.+++|+|++|||||||+..|++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987654
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00066 Score=57.15 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00056 Score=56.48 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=18.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999998543
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0072 Score=57.32 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
=.+..++.|+|++||||||+.+.|+.-
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999999999999999863
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00029 Score=58.93 Aligned_cols=28 Identities=39% Similarity=0.462 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.+-+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567799999999999999999998754
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=60.87 Aligned_cols=47 Identities=30% Similarity=0.261 Sum_probs=36.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc----CCCCCccEEEECC
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR----LWEPPSGTVFLDG 125 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g----l~~p~~G~I~i~g 125 (298)
..+++..+.+ .|.-++|.|+||+|||||...+.+ ++..|...|...+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 4778888888 788999999999999999999987 4444555554433
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0023 Score=51.90 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+.-.++++|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999874
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=56.68 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998644
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00091 Score=56.22 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0085 Score=66.08 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=82.4
Q ss_pred CcceeeeeEE---EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCccc
Q 022337 77 APILKGVNME---IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGT 153 (298)
Q Consensus 77 ~~vL~~isl~---i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~t 153 (298)
..-|+.+ +. +++|.++.|.||+|+|||||.-.++.-.....+ .+.|+.-+..+-+
T Consensus 368 i~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~-------------------~vlyis~E~s~~~-- 425 (1706)
T 3cmw_A 368 SLSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-------------------TCAFIDAEHALDP-- 425 (1706)
T ss_dssp CHHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------------------CEEEECTTSCCCH--
T ss_pred cHHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-------------------CeEEEEccCchHH--
Confidence 3455554 33 889999999999999999998777643221111 2333333222111
Q ss_pred HHHHhHhCccccCCCccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCCHH--
Q 022337 154 VVDNIRYGPQLRGKKLTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDPI-- 228 (298)
Q Consensus 154 v~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD~~-- 228 (298)
++ ++.+|++. .+.-..+. +..| -+.+++.++ .+|+++++|..++=....
T Consensus 426 ~~----------------------a~~lGvd~~~L~i~~~~--~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~ 479 (1706)
T 3cmw_A 426 IY----------------------ARKLGVDIDNLLCSQPD--TGEQ--ALEICDALARSGAVDVIVVDSVAALTPKAEI 479 (1706)
T ss_dssp HH----------------------HHHTTCCGGGCEEECCS--SHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCHHHH
T ss_pred HH----------------------HHHcCCCHHHeEEcCCC--CHHH--HHHHHHHHHHhcCCCEEEECCHHHhhccccc
Confidence 00 11122210 00000111 2222 234455554 579999999998766411
Q ss_pred -----------HHHHHHHHHHHH---HhcCCcEEEEEccCH----------------HHHHhhcCEEEEEeCCE
Q 022337 229 -----------STQNIEDVLVKL---KKKHGMTIVMVSHSI----------------KQIQRIADVVCLLVNGE 272 (298)
Q Consensus 229 -----------~~~~~~~~l~~l---~~~~g~tii~itHd~----------------~~~~~~~d~v~vl~~G~ 272 (298)
..+.+.+.++++ +++.+.++|+++|-. ..++.+||-++.+...+
T Consensus 480 e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 480 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp HSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 123344444444 466799999998842 24667899988876544
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00097 Score=55.22 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
=.++++|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0019 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0032 Score=70.26 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=47.8
Q ss_pred HHHHHHHHc--CCCCeEEEeCcCCCCC-H------------HHHHHHHHHHHHH---HhcCCcEEEEEccCHH-------
Q 022337 202 RVALARTLA--NEPEVLLLDEPTSALD-P------------ISTQNIEDVLVKL---KKKHGMTIVMVSHSIK------- 256 (298)
Q Consensus 202 Rv~iAral~--~~p~illLDEPts~LD-~------------~~~~~~~~~l~~l---~~~~g~tii~itHd~~------- 256 (298)
-+.+++.++ .+|++++.|.-++-.. + ...+.+.+.++++ +++.+.+||+++|-..
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 445566554 5799999999887552 1 1223455555555 5778999999988421
Q ss_pred ---------HHHhhcCEEEEEeCCE
Q 022337 257 ---------QIQRIADVVCLLVNGE 272 (298)
Q Consensus 257 ---------~~~~~~d~v~vl~~G~ 272 (298)
.++.+||-++.|+..+
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEecc
Confidence 3677899999887654
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=57.03 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++.+++|.|+.||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998643
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.001 Score=53.31 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00095 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.|-.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=56.17 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|.|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0011 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=59.00 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0015 Score=54.97 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35589999999999999999998643
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0011 Score=56.78 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+-++.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998644
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998854
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=52.89 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=53.23 Aligned_cols=22 Identities=41% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999753
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0045 Score=60.14 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.+..-+.|.||+|+|||+|.+.|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455568999999999999999998743
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=53.44 Aligned_cols=23 Identities=43% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=55.05 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+..+++|.|+.||||||+.+.|+.-+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998543
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998764
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=53.19 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999763
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=55.73 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+||.||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=52.81 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0013 Score=52.62 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=57.66 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0013 Score=61.70 Aligned_cols=21 Identities=52% Similarity=0.803 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999988743
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0013 Score=54.46 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0013 Score=52.79 Aligned_cols=23 Identities=39% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl 113 (298)
=.++++|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999975
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=53.17 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0015 Score=53.67 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=57.25 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0015 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999854
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=55.04 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.-+++|+|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999874
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0032 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.001 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
.=.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=56.91 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998743
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0017 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=53.32 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.++|+|+.|+|||||++.+.|-..+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987643
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0017 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0017 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0018 Score=53.70 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.002 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0018 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0018 Score=52.02 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=58.51 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=51.61 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999975
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0024 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++-+++|.||.||||||+.+.|+.-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999753
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0019 Score=52.31 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0023 Score=55.18 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0021 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0011 Score=59.97 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++-+++|.||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0021 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4889999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=57.62 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0021 Score=51.98 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0019 Score=57.53 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999988753
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=58.17 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|+|+.|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0021 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0023 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0031 Score=51.30 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0022 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0018 Score=54.99 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.5
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0027 Score=55.68 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.04 Score=61.68 Aligned_cols=36 Identities=36% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCcceeeee--EEEeCCcEEEEEcCCCccHHHHHHHHh
Q 022337 76 GAPILKGVN--MEIPKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 76 ~~~vL~~is--l~i~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
+.+.|+++. .-+++|+.+.|.||+|||||||...+.
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 456788887 579999999999999999999999887
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0025 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0027 Score=53.75 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999865
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0027 Score=52.15 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998743
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0026 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0025 Score=52.79 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 589999999999999999987
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0029 Score=54.16 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|-++.|+|+.||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998644
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.005 Score=50.16 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0025 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0026 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0027 Score=52.46 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998743
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0029 Score=53.93 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0011 Score=64.06 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=35.0
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i 123 (298)
..+++.+ +.+-+|+..+|+|++|+|||||++.|++-.....|.|.+
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 3466665 678899999999999999999999998765443344433
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0027 Score=51.86 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0026 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0028 Score=51.64 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999875
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0032 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0029 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-.++|+|+.|||||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0036 Score=54.08 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.+|-++.|-|+.||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876643
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0029 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999874
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0034 Score=56.22 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0031 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0029 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999999754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0039 Score=55.57 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=23.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCccE
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~ 120 (298)
-.++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 479999999999999999999976654443
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0032 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0031 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0025 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0033 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.003 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0033 Score=52.10 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0036 Score=55.91 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0044 Score=53.60 Aligned_cols=26 Identities=38% Similarity=0.645 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+-.+.|+|+.||||||+.+.|+.-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0038 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.004 Score=54.74 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987664
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0038 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl 113 (298)
=.++++|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999953
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0036 Score=56.32 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999975
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0039 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.++++|++|+|||||++.+.+-..+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4889999999999999999986543
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0038 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999884
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.003 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0039 Score=53.47 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0035 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0036 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0038 Score=57.91 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998664
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0034 Score=54.92 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.+|-++.|-|+.||||||+.+.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987664
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0041 Score=50.57 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999987653
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0033 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0036 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0032 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0036 Score=51.47 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0046 Score=53.43 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
+|.++.+-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0039 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0036 Score=52.41 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0037 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0042 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.028 Score=50.62 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=31.6
Q ss_pred CCCeEEEeCcCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 212 EPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 212 ~p~illLDEPts~LD-~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
+++++++||.-. |. ......+...+.+... +..+|++|++..
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~--~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSS--NCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGG--GCEEEEEESSGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCC--CcEEEEEeCCcc
Confidence 789999999854 55 6677777777776643 567888888765
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0043 Score=51.63 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0053 Score=56.89 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.++.|+||+|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999866
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0042 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999873
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0038 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0054 Score=53.20 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
.+|.++.+-|+.||||||+.+.|...+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999988765 4443
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.004 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0051 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
+|-+++|.|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 366899999999999999999997663
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0045 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999888753
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0055 Score=56.34 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.+++|+||+|||||||.+.|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.003 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=9.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0058 Score=53.31 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.+|-++.+.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0052 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999843
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.009 Score=50.31 Aligned_cols=34 Identities=26% Similarity=0.169 Sum_probs=26.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
..++..-+.+ .|.-+.|.|+||+|||||...+..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455555554 677899999999999999987765
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0044 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.=.++++|+.|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 335899999999999999999753
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0071 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0045 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0028 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0053 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0049 Score=54.87 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.++|+|+.|+|||||++.|.|-..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999998653
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0015 Score=57.45 Aligned_cols=32 Identities=34% Similarity=0.683 Sum_probs=25.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+.+.++..++| +.|.||+|+|||||++.++..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 34445555666 779999999999999999974
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0055 Score=56.44 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..+.|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999865
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0075 Score=51.89 Aligned_cols=36 Identities=33% Similarity=0.338 Sum_probs=29.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..++..-+.+ .|..+.|+||+|||||||..-|+.-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4566666665 67889999999999999999998653
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0042 Score=54.81 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999998763
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0049 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0055 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999888654
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.012 Score=60.78 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.5
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPP 117 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~ 117 (298)
..+.|.||+|+|||++.+.|+..+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 478899999999999999999877543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0068 Score=52.67 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
...-+.|.||.|+|||||.+.++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999998743
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0015 Score=62.51 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=32.5
Q ss_pred EEEeCC--cEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 85 MEIPKG--VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 85 l~i~~G--e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
|.+.++ .+++++|++|+||||+...|++.+.....+|.+-.-|.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 444434 58999999999999999999998765444566544443
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0075 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0058 Score=53.04 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=24.8
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-..++..++.|+||.||||+|..+.|+--+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344667789999999999999999998644
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0029 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=4.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998864
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0044 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~g 112 (298)
=.++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999965
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0064 Score=51.02 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999864
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0071 Score=51.54 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0068 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 588999999999999988874
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0077 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.01 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..+++|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0079 Score=50.52 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999853
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.012 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998764
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.013 Score=49.12 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=36.6
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH----------HHHhhcCEEEEEe
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK----------QIQRIADVVCLLV 269 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~----------~~~~~~d~v~vl~ 269 (298)
.+++++++||.-. +++. +.+.|+++.++ |..|++..++.+ .+..+||.+.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999754 5543 55566666655 888988888443 2345699997764
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0022 Score=56.16 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=26.8
Q ss_pred HcCCCCeEEEeCcCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 022337 209 LANEPEVLLLDEPTSA-LDPISTQNIEDVLVKLKKKHGMTIVMVSH 253 (298)
Q Consensus 209 l~~~p~illLDEPts~-LD~~~~~~~~~~l~~l~~~~g~tii~itH 253 (298)
+..+|+++|+||+-.- .+.......++.+..... .|..++.++|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence 3358999999997642 332222333333443433 3888998888
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.012 Score=49.02 Aligned_cols=43 Identities=12% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
.++.++++||.- .+++.....+.+.+.+.. .+..+|++|+...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYS--KSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcC--CCCeEEEEeCChh
Confidence 368899999964 477777777887777642 2566777777653
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.012 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.|+||.||||+|..+.|+.-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999998644
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.013 Score=55.69 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+++|.||+|||||||.+.|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.016 Score=52.05 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCcc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSG 119 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G 119 (298)
+-.++++|.+|+|||||++.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 346899999999999999999987644333
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.014 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999888765
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.011 Score=54.82 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=22.8
Q ss_pred CCCChhHHHHHHHHHHH---cC--CCCeEEEeCcC
Q 022337 193 GEISVGQAQRVALARTL---AN--EPEVLLLDEPT 222 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral---~~--~p~illLDEPt 222 (298)
..+|+||+||.+++|+| +. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 46999999999999999 76 89999999997
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.91 E-value=0.0096 Score=50.47 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCCeEEEeCcCC-----CCCHHHHHHHHHHHHHHH
Q 022337 201 QRVALARTLANEPEVLLLDEPTS-----ALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 201 QRv~iAral~~~p~illLDEPts-----~LD~~~~~~~~~~l~~l~ 241 (298)
=.-.|++.+..+|.+...++|+. .+|+..++.+...+++..
T Consensus 165 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
T 3gj0_A 165 PFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQ 210 (221)
T ss_dssp HHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhh
Confidence 34478888899998888887766 788888888888777643
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.046 Score=55.62 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC-CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCcc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW-EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLT 170 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 170 (298)
.+.|.||+|+|||+|.+.|+..+ ....--|.++.-++.......
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----------------------------------- 567 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----------------------------------- 567 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-----------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc-----------------------------------
Q ss_pred HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH---------
Q 022337 171 ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK--------- 241 (298)
Q Consensus 171 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~--------- 241 (298)
...+.+--+++ .+.+|++||. ..+++.....+++.+.+-.
T Consensus 568 ---------------------~~~l~~~~~~~---------~~~vl~lDEi-~~~~~~~~~~Ll~~le~g~~~~~~g~~~ 616 (758)
T 3pxi_A 568 ---------------------GGQLTEKVRRK---------PYSVVLLDAI-EKAHPDVFNILLQVLEDGRLTDSKGRTV 616 (758)
T ss_dssp ------------------------CHHHHHHC---------SSSEEEEECG-GGSCHHHHHHHHHHHHHSBCC-----CC
T ss_pred ---------------------cchhhHHHHhC---------CCeEEEEeCc-cccCHHHHHHHHHHhccCeEEcCCCCEe
Q ss_pred hcCCcEEEEEcc----------------CHHHHHhhcCEEEEEe
Q 022337 242 KKHGMTIVMVSH----------------SIKQIQRIADVVCLLV 269 (298)
Q Consensus 242 ~~~g~tii~itH----------------d~~~~~~~~d~v~vl~ 269 (298)
...+..+|++|+ -...+..-+|.++.+.
T Consensus 617 ~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~ 660 (758)
T 3pxi_A 617 DFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFH 660 (758)
T ss_dssp BCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC
T ss_pred ccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=53.74 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=29.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
.+|..+.|.||.|+|||||.+.++..+......+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 35678999999999999999999987764444455544
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.0052 Score=51.43 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988865
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.011 Score=54.69 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.-+++|+|+.|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998765
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.013 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.019 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-.++|+|+.|+|||||++.+.+-.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999987753
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.0081 Score=57.67 Aligned_cols=41 Identities=29% Similarity=0.465 Sum_probs=30.2
Q ss_pred eeeeEEEeCCcE--EEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 81 KGVNMEIPKGVI--MGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 81 ~~isl~i~~Ge~--~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
+.+.-.+..|.+ +.|.||+|+|||||.+.|+......-..+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 344444555554 88999999999999999999876544443
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.015 Score=54.98 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 173 EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 173 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
.+.++++.++... ...++|.++.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~-----~~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPE-----DPTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCS-----CGGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCC-----ccccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 4555666666532 1347889988888777667778999887
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0034 Score=52.45 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998744
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.019 Score=52.42 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=28.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
.+..-+.|.||.|+|||||.+.++.... ...-+.+++.++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~~~i~~~~l 82 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN-NSTFFSISSSDL 82 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEEEEEECCSS
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC-CCcEEEEEhHHH
Confidence 3456688999999999999999998652 122345555443
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.087 Score=46.18 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=38.2
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC----------HHHHHhhcCEEEEEe
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS----------IKQIQRIADVVCLLV 269 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd----------~~~~~~~~d~v~vl~ 269 (298)
.+.+++++||.--..| ..++.+.+. . .|+.||+.-+| ...+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~---~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMA---N-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHH---H-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHH---h-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988754 444444443 3 48999999999 445567899998763
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.013 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.019 Score=50.98 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+..+.|.||.|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999866
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.016 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999986
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.026 Score=49.36 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.+..+.|.||+|+|||+|.+.|......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 4567889999999999999999987653
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.022 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.018 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.+...+.|.||.|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34456889999999999999999874
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.019 Score=52.89 Aligned_cols=25 Identities=44% Similarity=0.667 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+..+.|.||+|+||||+.+.|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4457899999999999999999876
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.023 Score=52.16 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+..+.|.||.|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5589999999999999999998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 298 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-64 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-64 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-63 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-62 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-61 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-60 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-60 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-58 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-58 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-57 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-54 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-53 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-53 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-50 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-50 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-50 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-50 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-49 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-49 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-46 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-23 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-14 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-14 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-06 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 1e-04 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 5e-04 | |
| d1x6va3 | 195 | c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin | 9e-04 | |
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 0.001 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.001 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 0.001 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.002 | |
| d1y63a_ | 174 | c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma | 0.002 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.002 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 0.003 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 0.003 | |
| d1uj2a_ | 213 | c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho | 0.004 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 0.004 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 0.004 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 200 bits (511), Expect = 2e-64
Identities = 67/240 (27%), Positives = 121/240 (50%), Gaps = 8/240 (3%)
Query: 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS 118
I+ + ++ L K + +N+ I G + ++GPSG GK+T LR + L EP
Sbjct: 2 IKMVEVKLENLTK-RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 60
Query: 119 GTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVY 175
G ++ RD+T L R + M+FQ A++ TV +NI + +++ K + V
Sbjct: 61 GRIYFGDRDVTYLP--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 118
Query: 176 KLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235
L ++ LN+ ++S GQ QRVA+AR + EP+VLL+DEP S LD +
Sbjct: 119 WAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA 177
Query: 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 294
+ KL++K +T + V+H + + D + ++ G+++++ P ++ F+
Sbjct: 178 EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFI 237
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 199 bits (507), Expect = 9e-64
Identities = 78/236 (33%), Positives = 126/236 (53%), Gaps = 18/236 (7%)
Query: 58 QIQKPKFRVRELRKE-SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP 116
+I++ + + + + +D+ APILK +N+ I KG + +G SG GKSTL+ + R ++
Sbjct: 11 EIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 70
Query: 117 PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYK 176
SG + +DG +I D SLR ++G++ Q LF TV +NI G T+ EV +
Sbjct: 71 TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR----PTATDEEVVE 126
Query: 177 LLSLADLD----------SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226
+A+ + + + G ++S GQ QR+++AR N P +L+LDE TSALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
S I++ L L K T ++V+H + I AD + ++ NG IVE L
Sbjct: 187 LESESIIQEALDVLSK--DRTTLIVAHRLSTI-THADKIVVIENGHIVETGTHREL 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 198 bits (504), Expect = 3e-63
Identities = 81/252 (32%), Positives = 133/252 (52%), Gaps = 22/252 (8%)
Query: 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF 122
K V +L K G +LKGV+++ G ++ IIG SGSGKST LR +N L +P G +
Sbjct: 2 KLHVIDLHK-RYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 123 LDGRDITDL-------------DVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK 168
++G++I + + LR ++ M+FQ L+ TV++N+ P ++
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP-IQVLG 119
Query: 169 LTENE----VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224
L++++ K L+ +D K +S GQ QRV++AR LA EP+VLL DEPTSA
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 179
Query: 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLS 283
LDP + + ++ + G T+V+V+H + + ++ V L G+I E P +
Sbjct: 180 LDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 238
Query: 284 EAKHPMALRFLQ 295
+ P +FL+
Sbjct: 239 NPQSPRLQQFLK 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 195 bits (497), Expect = 2e-62
Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 8/222 (3%)
Query: 72 ESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL 131
+ +L+G+ + G + ++GP+GSGKST+ L L++P G + LDG+ +
Sbjct: 22 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQY 81
Query: 132 DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYK-------LLSLADLD 184
+ L R+V + Q P +F ++ +NI YG + + L
Sbjct: 82 EHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGY 141
Query: 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
+ +++ G ++S GQ Q VALAR L +P VL+LD+ TSALD S +E +L + +++
Sbjct: 142 DTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY 201
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
++++++ + + AD + L G I E L E K
Sbjct: 202 SRSVLLITQHLSLV-EQADHILFLEGGAIREGGTHQQLMEKK 242
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 193 bits (492), Expect = 1e-61
Identities = 88/239 (36%), Positives = 141/239 (58%), Gaps = 11/239 (4%)
Query: 65 RVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
++ + K G L V++ +P G I G+IG SG+GKSTL+R +N L P G+V
Sbjct: 3 KLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV 62
Query: 122 FLDGRDITDL---DVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRG--KKLTENEVY 175
+DG+++T L ++ RR++GM+FQ L TV N+ +L K + V
Sbjct: 63 LVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT 122
Query: 176 KLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235
+LLSL L + +S GQ QRVA+AR LA+ P+VLL DE TSALDP +T++I +
Sbjct: 123 ELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRF 293
+L + ++ G+TI++++H + ++RI D V ++ NGE++E ++ S K P+A +F
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF 240
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 190 bits (485), Expect = 1e-60
Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 14/228 (6%)
Query: 65 RVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
+++ + K G LK VN+ I +G + I+GPSGSGKST+L + L +P G V
Sbjct: 3 KLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62
Query: 122 FLDGRDITDLDVLSLRR----KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENE--- 173
++D DLD L + K+G +FQ L T ++N+ + + E
Sbjct: 63 YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122
Query: 174 --VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
+ L +A+L+ F N ++S GQ QRVA+AR LAN P ++L D+PT ALD + +
Sbjct: 123 KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGE 182
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279
I +L KL ++ G T+V+V+H I + R + + L +GE+ K
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDI-NVARFGERIIYLKDGEVEREEKL 229
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 189 bits (482), Expect = 4e-60
Identities = 70/242 (28%), Positives = 123/242 (50%), Gaps = 13/242 (5%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125
R + DD IL+ ++ E I+ GPSG GKST+ L R ++P +G + +DG
Sbjct: 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63
Query: 126 RDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADL-- 183
+ I ++ + + R ++G + Q A+ GT+ +N+ YG + +V L
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 184 -----DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238
++ + + G +IS GQ QR+A+AR P++L+LDE T++LD S ++ L
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL--QL 296
L K G T ++++H + I AD + + G+I K + L A HP+ +++ QL
Sbjct: 184 SLMK--GRTTLVIAHRLSTI-VDADKIYFIEKGQITGSGKHNELV-ATHPLYAKYVSEQL 239
Query: 297 SG 298
+
Sbjct: 240 TV 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 185 bits (471), Expect = 2e-58
Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 10/223 (4%)
Query: 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
D IL +N+ I +G ++GI+G SGSGKSTL + + R + P +G V +DG D+ D
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE------NEVYKLLSLADLDSS 186
LRR+VG++ Q L +++DNI + + L + ++
Sbjct: 72 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNT 131
Query: 187 FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
+ + G +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K G
Sbjct: 132 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GR 189
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEAKHP 288
T+++++H + + + AD + ++ G+IVE K LLSE +
Sbjct: 190 TVIIIAHRLSTV-KNADRIIVMEKGKIVEQGKHKELLSEPESL 231
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 185 bits (472), Expect = 2e-58
Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 16/223 (7%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
P L+ +N++IP G + ++G SGSGKST+ + R ++ G + +DG D+ + +
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 84
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD--------- 184
SLR +V ++ Q LF TV +NI Y R ++ + ++ + +A
Sbjct: 85 ASLRNQVALVSQNVHLFNDTVANNIAYA---RTEEYSREQIEEAARMAYAMDFINKMDNG 141
Query: 185 -SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
+ + + G +S GQ QR+A+AR L + +L+LDE TSALD S + I+ L +L+K
Sbjct: 142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK- 200
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
T ++++H + I AD + ++ +G IVE L
Sbjct: 201 -NRTSLVIAHRLSTI-EQADEIVVVEDGIIVERGTHSELLAQH 241
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 184 bits (468), Expect = 1e-57
Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)
Query: 36 FRDEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGI 95
F +E LL + + + ++ G P+LK +N+ I KG ++ I
Sbjct: 11 FWEEGFGELLE---KVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAI 67
Query: 96 IGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155
G +GSGK++LL + E G + GR V Q + GT+
Sbjct: 68 TGSTGSGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIK 114
Query: 156 DNIRYGPQLRGKKLTE-----NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210
+NI +G + + A+ D++ L + G +S GQ R++LAR +
Sbjct: 115 ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 174
Query: 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270
+ ++ LLD P LD + + + + V T ++V+ ++ + R AD + +L
Sbjct: 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRILVTSKMEHL-RKADKILILHQ 232
Query: 271 GEIVEVLKPDLLSEAKHPMALRFL 294
G L + + + +
Sbjct: 233 GSSYFYGTFSELQSLRPDFSSKLM 256
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 174 bits (443), Expect = 3e-54
Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 10/238 (4%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
R+ ++ K ++ +++E+ G M ++GPSG GK+T LR + L EP G +++
Sbjct: 5 RLVDVWK-VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 125 GRDITDLDVLSLRR----KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENE--VYKL 177
+ + D + + M+FQ AL+ TV DNI + +LR E + V ++
Sbjct: 64 DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
Query: 178 LSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237
L L LN+ E+S GQ QRVAL R + +P+V L+DEP S LD + L
Sbjct: 124 AELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 238 VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 294
KL+++ G+T + V+H + + D + ++ G + +V P ++ + + F+
Sbjct: 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFI 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 172 bits (438), Expect = 2e-53
Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
R + K L GV++ + KG + IIGP+GSGKSTL+ + + G V+ +
Sbjct: 6 RTENIVK-YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 125 GRDITDLDVLSLRRK-VGMLFQIPALFEG-TVVDNIRYGPQLRG---------------K 167
+DIT+ + L + FQ P + TV++N+ G G +
Sbjct: 65 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 124
Query: 168 KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227
+ + +K+L L ++ GE+S GQ + V + R L P+++++DEP + + P
Sbjct: 125 EEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 183
Query: 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
+I + +++LK K G+T +++ H + + D + ++ NG+I+ + +
Sbjct: 184 GLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 235
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 170 bits (433), Expect = 7e-53
Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 8/234 (3%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
+++ + K + + K +N++I +G + +GPSG GKSTLLR + L SG +F+
Sbjct: 2 QLQNVTK-AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLA 181
+ + D R VGM+FQ AL+ +V +N+ +G +L G K++ V ++ +
Sbjct: 61 EKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 118
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
L + L++ +S GQ QRVA+ RTL EP V LLDEP S LD + + +L
Sbjct: 119 QL-AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 294
K+ G T++ V+H + +AD + +L G + +V KP +L F+
Sbjct: 178 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFI 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 165 bits (418), Expect = 1e-50
Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 5/219 (2%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
V+ L +KG+++++P+G I+ +IG +G+GK+T L A+ L G + +
Sbjct: 8 EVQSLHV-YYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
Query: 125 GRDITDLD-VLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENE-VYKLLSLA 181
G+DIT+ + R + ++ + +F TV +N+ G R K + + SL
Sbjct: 67 GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF 126
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
L + GG +S G+ Q +A+ R L + P++L++DEP+ L PI + +V+ K+
Sbjct: 127 PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
++ G TI++V + ++A +L G+IV K
Sbjct: 187 QE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKAS 224
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 163 bits (414), Expect = 2e-50
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF 122
K +R+L D P+L+ + M I KG ++ GP+G GK+TLL+ ++ +P G +
Sbjct: 2 KLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 123 LDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLA 181
+G IT + + K+ L + + +V D ++ L G K+ +NE+ L
Sbjct: 60 YNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
++ K GE+S G +RV LA TL E+ +LD+P A+D S + ++++
Sbjct: 115 EVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 172
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLL 268
K+ G+ I+ + DV L
Sbjct: 173 KEKGIVIISSREEL----SYCDVNENL 195
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 163 bits (415), Expect = 3e-50
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 20/222 (9%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
L ++ E+ G I+ ++GP+G+GKSTLL + + G++ G+ + L
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLA 71
Query: 138 RKVGMLFQIPAL-FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEIS 196
L Q F V + + + N+V L+L D L ++ ++S
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD----KLGRSTNQLS 127
Query: 197 VGQAQRVALARTLAN-------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
G+ QRV LA + ++LLLDEP ++LD ++ +L L + G+ IV
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL-CQQGLAIV 186
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 285
M SH + R A LL G+++ EVL P L++A
Sbjct: 187 MSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 162 bits (412), Expect = 9e-50
Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 7/219 (3%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
V++LRK ILKG++ EI +G I G+IGP+G+GK+T LR ++ L +P SG V +
Sbjct: 4 VVKDLRK-RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG--KKLTENEVYKLLSLA 181
G+++ + +R+ + L + + ++ +R+ E V + +A
Sbjct: 63 GKNVVEEPH-EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 121
Query: 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241
L + S G +++ +AR L P + +LDEPTS LD ++ + + +L +
Sbjct: 122 GLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180
Query: 242 KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
++ +TI++ SH++ +++ + D + L+ NG IVE +
Sbjct: 181 QEG-LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVE 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 161 bits (409), Expect = 3e-49
Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 9/240 (3%)
Query: 63 KFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
+ V+ + K G L VN+ I G GI+GPSG+GK+T +R + L P +G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 122 FLDGRDITDLDVLSLR---RKVGMLFQIPALFEG-TVVDNIRYGPQLR--GKKLTENEVY 175
+ D R + L + RK+GM+FQ AL+ T +NI + K+ V
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 176 KLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235
++ + D+ LN E+S Q QRVALAR L +P +LLLDEP S LD +
Sbjct: 123 EVAKILDIHH-VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 294
++ +++ + G+T+++VSH I IAD V +LV G++V+V KP DL +
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 160 bits (406), Expect = 6e-49
Identities = 65/232 (28%), Positives = 127/232 (54%), Gaps = 8/232 (3%)
Query: 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124
+ L ++ + + L +++++ G I+GP+G+GK+ L + P SG + LD
Sbjct: 3 EIESLSRKWKNFS--LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Query: 125 GRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADL 183
G+D+TDL + + ++Q +LF V N+ +G +++ K V +
Sbjct: 61 GKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK-DPKRVLDTARDLKI 117
Query: 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
+ L++ +S G+ QRVALAR L P++LLLDEP SALDP + +N ++L L KK
Sbjct: 118 EH-LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 294
+ +T++ ++H + + +AD + ++++G++++V KP ++ + F+
Sbjct: 177 NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 152 bits (386), Expect = 7e-46
Identities = 70/213 (32%), Positives = 113/213 (53%), Gaps = 5/213 (2%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142
V+ E+ + ++GP+G+GKS L + + +P G V L+G DIT L RR +G
Sbjct: 18 VDFEMGRDYC-VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74
Query: 143 LFQIPALFEGTVV-DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ 201
+ Q ALF V NI YG + + + V ++ + L++ +S G+ Q
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQ 133
Query: 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261
RVALAR L +P +LLLDEP SA+D + + + L ++++ + I+ V+H + + +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193
Query: 262 ADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294
AD V +++NG IVE K L AK+ FL
Sbjct: 194 ADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 90.8 bits (224), Expect = 8e-23
Identities = 20/187 (10%), Positives = 52/187 (27%), Gaps = 26/187 (13%)
Query: 94 GIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGT 153
I G G GK+TL++ + + + + + + R + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 154 VVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213
G +N E A +
Sbjct: 64 FTSKKLVGSY-----------------------GVNVQYFEELAIPILERAYREAKKDRR 100
Query: 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
+V+++DE + D++ ++ + +V I+ + + + L +
Sbjct: 101 KVIIIDEIGKMELFS--KKFRDLVRQIMHDPNVNVVATIP-IRDVHPLVKEIRRLPGAVL 157
Query: 274 VEVLKPD 280
+E+ +
Sbjct: 158 IELTPEN 164
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 2e-06
Identities = 18/174 (10%), Positives = 51/174 (29%), Gaps = 16/174 (9%)
Query: 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE 151
+ + GP G GK+TL+ + + + V + + V L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 152 GTVVDNIRY--GPQLRGKKLTENEVYKL---------LSLADLDSSFLNKTGGEISVGQA 200
++ ++ + +L S + G++ +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122
Query: 201 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
+ R + P ++L P+ ++ +++ + + + V+
Sbjct: 123 LFIQAVRQTLSTPGTIIL-----GTIPVPKGKPLALVEEIRNRKDVKVFNVTKE 171
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (93), Expect = 1e-04
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264
A +LDE +ALD + Q I + + + IV +S + +D
Sbjct: 347 FAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIV-ISLK-NTMFEKSDA 404
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 38.2 bits (87), Expect = 5e-04
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
+ ++ +++GI G S SGK+TL L++ +V + D ++
Sbjct: 15 LAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 9e-04
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114
+G + + G SG+GK+T+ AL
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 37.0 bits (84), Expect = 0.001
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 89 KGVIMGIIGPSGSGKSTLLRALNR 112
+G + + G SGK + RAL
Sbjct: 5 QGFTIFLTGYMNSGKDAIARALQV 28
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 36.9 bits (84), Expect = 0.001
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128
G I+ + G GSGKST+ AL L P V D+
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHSDDL 40
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.9 bits (84), Expect = 0.001
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 90 GVIMGIIGPSGSGKSTLLRAL 110
G ++ + GPS GKST++R L
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCL 22
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 36.4 bits (83), Expect = 0.002
Identities = 14/93 (15%), Positives = 26/93 (27%)
Query: 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE 151
+ ++G SGK+TL+ V + + +
Sbjct: 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 62
Query: 152 GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD 184
V + LR ++V L + LD
Sbjct: 63 TAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLD 95
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Score = 36.1 bits (82), Expect = 0.002
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRAL 110
E PKG+ + I G G+GK+++ +
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMI 25
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 35.7 bits (81), Expect = 0.002
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132
++ SG+GK+TLL+ L L D+D
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMD 44
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 35.8 bits (81), Expect = 0.003
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 89 KGVIMGIIGPSGSGKSTLLRAL-NRLWEPPSGTVFLDGRDI 128
I ++G SGSGKS + + ++L FL R
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN 45
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 36.4 bits (83), Expect = 0.003
Identities = 26/183 (14%), Positives = 54/183 (29%), Gaps = 7/183 (3%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDGRDITDLDVLSLR 137
+L + + +G+ G G+GKST L A L V + + + S+
Sbjct: 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSIL 102
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197
+ + E + + L G E+ L A D + G S
Sbjct: 103 GDKTRMNDLARA-EAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE 161
Query: 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257
+ R+ + + + + +++ K G V+ +
Sbjct: 162 TEVARMVDCFISLQIAGG---GDDLQGIKKGLMEVADLIVI--NKDDGDNHTNVAIARHM 216
Query: 258 IQR 260
+
Sbjct: 217 YES 219
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.004
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 91 VIMGIIGPSGSGKSTLLRALNRL 113
++G+ G + SGKS++ + +L
Sbjct: 3 FLIGVSGGTASGKSSVCAKIVQL 25
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 35.6 bits (81), Expect = 0.004
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 90 GVIMGIIGPSGSGKSTLLRAL 110
G + + PSG+GKS+L++AL
Sbjct: 2 GTLYIVSAPSGAGKSSLIQAL 22
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.3 bits (80), Expect = 0.004
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 95 IIGPSGSGKSTLLRAL 110
+ GPSG+GKSTLL+ L
Sbjct: 5 LSGPSGAGKSTLLKKL 20
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 35.4 bits (80), Expect = 0.004
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRAL 110
EI + + I+G GKSTL A+
Sbjct: 4 EITDAIKVAIVGRPNVGKSTLFNAI 28
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.92 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.83 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.79 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.49 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.27 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.15 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.44 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.34 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.94 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.87 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.86 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.78 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.72 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.65 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.64 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.62 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.6 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.56 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.52 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.48 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.46 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.45 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.4 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.39 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.39 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.35 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.33 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.31 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.3 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.28 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.28 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.27 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.21 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.19 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.15 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.12 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.11 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.03 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.03 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 97.02 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.01 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.0 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.0 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.99 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.96 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.95 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.94 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.93 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.93 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.9 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.9 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.87 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.87 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.87 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.86 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.84 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.83 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.83 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.82 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.82 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.82 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.81 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.79 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.76 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.7 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.7 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.7 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.65 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.64 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.61 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.6 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.59 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.58 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.57 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.56 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.56 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.56 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.54 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.52 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.51 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.49 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.45 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.45 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.43 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.41 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.38 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.38 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.36 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.35 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.33 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.32 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.32 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.3 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.3 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.24 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.23 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.23 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.19 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.18 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.15 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.13 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.13 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.11 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.09 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.06 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.05 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.04 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.03 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.02 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.02 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.99 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.97 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.96 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.94 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.88 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.87 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.87 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.87 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.86 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.81 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.81 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.78 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.78 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.78 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.77 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.77 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.76 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.73 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.72 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.72 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.71 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.71 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.69 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.66 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.65 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.64 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.64 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.62 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.6 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.58 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.56 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.55 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.54 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.51 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.49 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.43 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.42 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.41 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.4 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.39 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.39 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.37 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.34 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.34 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.33 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.33 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.29 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.26 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.24 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 95.23 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.23 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.19 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.17 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.17 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.17 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.14 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.11 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.1 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.06 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.04 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.03 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.99 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.94 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.94 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.9 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.85 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.84 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.79 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.78 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.76 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.75 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.71 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.69 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.68 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.57 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.43 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.3 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.28 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.05 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.03 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.0 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.97 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.73 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.58 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.53 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.4 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.35 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.35 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.08 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.07 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.99 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.76 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.72 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.69 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.54 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.44 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 92.29 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 92.22 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.21 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.46 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.39 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.1 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.06 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 90.98 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.85 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.31 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.29 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 90.26 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.06 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 89.89 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.72 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 89.39 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.8 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 88.59 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 88.33 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.82 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 87.54 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 87.35 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.93 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.72 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 86.55 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 86.45 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 86.41 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.93 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 85.92 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 85.82 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.76 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 84.24 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.16 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 84.05 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 84.0 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 83.75 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 82.44 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 82.39 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 81.27 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 80.92 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.8e-69 Score=481.72 Aligned_cols=230 Identities=28% Similarity=0.465 Sum_probs=203.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..|+++||+|+|+ +.+||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .+++||
T Consensus 5 ~~I~v~nlsk~yg-~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 81 (239)
T d1v43a3 5 VEVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNIS 81 (239)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEE
T ss_pred CeEEEEEEEEEEC-CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc--ccceEE
Confidence 4599999999994 6789999999999999999999999999999999999999999999999999987764 357899
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||||++.+|+. ||+||+.|+...++.+. .++++.++++.++++ ++.++++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLll 160 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 160 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHhhhccCCCceee
Confidence 99999999985 99999999987666543 346788999999996 689999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 295 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 295 (298)
||||+||||.++.+++++|++++++.|+|+|+||||++++.++||||++|++|+|++.|+++++.+ +.+.+...|++
T Consensus 161 DEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~~~~lg 238 (239)
T d1v43a3 161 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIG 238 (239)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHhhC
Confidence 999999999999999999999987779999999999999999999999999999999999999864 45677777764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-69 Score=479.13 Aligned_cols=227 Identities=33% Similarity=0.521 Sum_probs=172.9
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
|+++||+|+| ++.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.+.+. .+++||||
T Consensus 1 Iev~nv~k~y-g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGMV 77 (232)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEEE
T ss_pred CEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceeeee
Confidence 6899999999 46789999999999999999999999999999999999999999999999999987663 46789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+. ||+||+.++...++.+ ..++++.++++.+++. ++.++++++|||||||||+|||||+.+|++|||||
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDE 156 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 156 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEES
T ss_pred ccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999985 9999999997765543 3356799999999997 68999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~ 294 (298)
||+||||.++.++++.|+++.++.|+|+|+||||++++..+||||++|++|+|++.|+++++.+ +.+.+...|+
T Consensus 157 Pts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v~~fl 231 (232)
T d2awna2 157 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFI 231 (232)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCHHHHHhc
Confidence 9999999999999999999988789999999999999999999999999999999999999864 4566766665
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.2e-69 Score=480.58 Aligned_cols=231 Identities=34% Similarity=0.510 Sum_probs=209.0
Q ss_pred eEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC---HHHHhc
Q 022337 63 KFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~---~~~~~~ 138 (298)
.|+++||+|+|+++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 58999999999643 47999999999999999999999999999999999999999999999999986543 234567
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||||||++.+|+. ||+|||.|++..++.+. .++++.++++.+||+ ++.+++|++|||||||||+|||||+++|++
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P~l 161 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSL 161 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH-hhhhCChhhCCHHHHhHHHHHhHHhhcccc
Confidence 89999999999985 99999999987665543 346799999999996 689999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~ 294 (298)
|||||||+||||.++.++++.|+++.++.|+|+|+||||++++..+||||++|++|+|++.|+++++.. +.+.+...|+
T Consensus 162 lllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~~~fl 241 (242)
T d1oxxk2 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241 (242)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHH
T ss_pred eeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 999999999999999999999999987779999999999999999999999999999999999999864 4567777665
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=6.1e-69 Score=475.48 Aligned_cols=226 Identities=29% Similarity=0.540 Sum_probs=207.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+++||+|+|+ + .+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.+.+.. +++|||
T Consensus 1 mi~v~nlsk~y~-~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 1 MIEIESLSRKWK-N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp CEEEEEEEEECS-S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred CEEEEEEEEEeC-C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhccee
Confidence 589999999994 3 599999999999999999999999999999999999999999999999999876643 678999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
|||++.+|+. ||+||+.|+...++.. ..+++.++++.+++. ++.++++.+|||||||||+|||||+++|++||||||
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~-~~~~~~~~l~~~~l~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEP 154 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIK-DPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred eccccccCccccHHHHHHHHHhhcccc-HHHHHHHHHHHhcch-hhHhCChhhCCHHHhcchhhhhhhhccCCceeecCC
Confidence 9999999985 9999999987665543 467899999999997 689999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHh
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~ 294 (298)
|+||||.++.++++.|+++.++.|.|||+||||++++..+||||++|++|+|++.|+++++.+ +.+.....|+
T Consensus 155 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~v~~fl 228 (229)
T d3d31a2 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228 (229)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 999999999999999999987779999999999999999999999999999999999999864 3455566665
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-69 Score=481.57 Aligned_cols=229 Identities=37% Similarity=0.613 Sum_probs=207.8
Q ss_pred eEEEEeEEEEeCCCC---cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---H
Q 022337 63 KFRVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS---L 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~---~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 136 (298)
||+++||+|+|+++. .||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+..+ +
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 689999999996543 5899999999999999999999999999999999999999999999999998877543 4
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
|++||||||++++|+. ||+||+.+++..++.+. .++++.++++.+||+ ++.+++|++|||||||||+|||||+.+|
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~~P 159 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNP 159 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHTCC
T ss_pred hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHhhhhccCC
Confidence 6789999999999975 99999999876655433 356789999999997 5789999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHH
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALR 292 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~ 292 (298)
++|||||||+|||+.++.++++.|+++.++.|+|+|+||||++++..+||||++|++|+|++.|+++++.+ +.+++..+
T Consensus 160 ~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~~~~t~~ 239 (240)
T d3dhwc1 160 KVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQK 239 (240)
T ss_dssp SEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSCCTTTTC
T ss_pred CeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCChHHcC
Confidence 99999999999999999999999999987779999999999999999999999999999999999999864 45666544
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.3e-69 Score=479.85 Aligned_cols=231 Identities=30% Similarity=0.489 Sum_probs=208.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH----HHh
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL----SLR 137 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~----~~~ 137 (298)
+.|+++||+|+|+ +.+||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.. ..+
T Consensus 2 ~~i~v~nl~k~yg-~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 2 AGVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CcEEEEeEEEEEC-CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence 3589999999994 67899999999999999999999999999999999999999999999999998654322 236
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
++||||||++.+|+. ||+||+.++...++.+. .++++.++++.+++. ++.+++|++|||||||||+|||||+.+|+
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAraL~~~P~ 159 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 789999999999985 99999999977666543 346689999999996 68999999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHH
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF 293 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~ 293 (298)
+|||||||+|||+.++..+++.|+++.++.|+|||+||||++++..+||||++|++|+|++.|+++++.. +.+++...|
T Consensus 160 iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~~~~~~f 239 (240)
T d1g2912 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGF 239 (240)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred EEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHh
Confidence 9999999999999999999999999987779999999999999999999999999999999999999854 567777766
Q ss_pred h
Q 022337 294 L 294 (298)
Q Consensus 294 ~ 294 (298)
+
T Consensus 240 i 240 (240)
T d1g2912 240 I 240 (240)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-67 Score=467.91 Aligned_cols=216 Identities=35% Similarity=0.554 Sum_probs=194.0
Q ss_pred eEEEEeEEEEeCCCC---cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH---
Q 022337 63 KFRVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL--- 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~---~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~--- 136 (298)
||+++||+|+|+.+. .||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..++..++
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 689999999996443 48999999999999999999999999999999999999999999999999998876543
Q ss_pred -hcceEEEeCCCCCCcc-cHHHHhHhCccccCC---C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 137 -RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK---K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 137 -~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+++||||||++.+++. ||+||+.++..+... . ...+++.++++.+++.+.+.+++|++|||||||||+|||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL 160 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence 3569999999999975 999999998654321 1 12356888999999975578999999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
+.+|++|||||||++|||.+++++++.|+++.++.|+|+|+||||++.+ ++||||++|++|+|+++|++
T Consensus 161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence 9999999999999999999999999999999887899999999999987 69999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.1e-66 Score=468.12 Aligned_cols=231 Identities=36% Similarity=0.556 Sum_probs=205.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC----------
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---------- 132 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~---------- 132 (298)
.|+++||+|+| ++.+||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...+
T Consensus 2 ~Lev~nl~k~y-g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEEEEEEEE-CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence 58999999999 4678999999999999999999999999999999999999999999999999986432
Q ss_pred ---HHHHhcceEEEeCCCCCCc-ccHHHHhHhCc-cccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 133 ---VLSLRRKVGMLFQIPALFE-GTVVDNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 133 ---~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
...+|++||||||++.+|+ .||+||+.++. ...+.. ..++++.++++.+++.+...+++|.+|||||||||+|
T Consensus 81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i 160 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 160 (258)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHH
Confidence 1245678999999999997 49999999874 233332 2346688999999997556688899999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh-c
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-E 284 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~-~ 284 (298)
||||+.+|++|||||||+|||+.++.++++.|++++++ |+|||+||||++++..+||||++|++|+|+++|+++++. +
T Consensus 161 AraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~-g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~ 239 (258)
T d1b0ua_ 161 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239 (258)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc-CCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999999999865 999999999999999999999999999999999999985 4
Q ss_pred cCChHHHHHhh
Q 022337 285 AKHPMALRFLQ 295 (298)
Q Consensus 285 ~~~~~~~~~~~ 295 (298)
+.+++.+.|++
T Consensus 240 P~~~~~~~ll~ 250 (258)
T d1b0ua_ 240 PQSPRLQQFLK 250 (258)
T ss_dssp CCSHHHHHHHH
T ss_pred CCCHHHHHHHh
Confidence 56788877764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.6e-65 Score=456.70 Aligned_cols=232 Identities=27% Similarity=0.457 Sum_probs=204.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ 139 (298)
+.+|+++||+|+| ++..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+.... |..
T Consensus 4 d~~Lev~~l~k~y-g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 4 DIVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred ceEEEEeeEEEEE-CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 5689999999999 46789999999999999999999999999999999999999999999999999988776554 445
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCc-cHHHHHHHHHHc-CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKL-TENEVYKLLSLA-DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~-~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++|+||++.+|+. ||+||+.++...+.... ..+++.++++.+ ++. +..++++++|||||||||+|||||+++|++|
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lL 161 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEe
Confidence 9999999999985 99999998765433222 234466667666 564 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHHHhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQL 296 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 296 (298)
||||||+||||.+++++++.|++++++ |+|||++|||++++.++||||++|++|+|+++|+++++.++ ....+.|++.
T Consensus 162 llDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~-~~v~~~ylG~ 239 (240)
T d1ji0a_ 162 MMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN-EMVRKAYLGV 239 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC-HHHHHHHSCC
T ss_pred eecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC-HHHHHHhCcC
Confidence 999999999999999999999999775 99999999999999999999999999999999999998753 3455666654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.2e-65 Score=459.32 Aligned_cols=224 Identities=31% Similarity=0.550 Sum_probs=196.2
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+++||+|+|++++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++..++...+|++|||
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 68999999999766789999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|||++.+|+.|++||+.++... ....+++.++++..++... ...+.+.+|||||||||+|||||+++
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~ 157 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEG---DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTS---CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EccccccCCcchhhheeccccc---ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999887532 2234556666666555321 12334678999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 292 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~ 292 (298)
|+|||||||||+||+.+++.+++.|+++.+ |+|+|+||||++.+. .||||++|++|+|++.|+++++.+. ++.+..
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~ 233 (242)
T d1mv5a_ 158 PKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVAT-HPLYAK 233 (242)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHHH-CHHHHH
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC-ChHHHH
Confidence 999999999999999999999999999864 899999999999885 5999999999999999999999764 444444
Q ss_pred H
Q 022337 293 F 293 (298)
Q Consensus 293 ~ 293 (298)
+
T Consensus 234 l 234 (242)
T d1mv5a_ 234 Y 234 (242)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-64 Score=451.06 Aligned_cols=224 Identities=33% Similarity=0.531 Sum_probs=196.0
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|+++||+|+|+++ +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++..++..++|++|||
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 7899999999644 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|||++.+|+.||+|||.++.. ....+++.++++..++.+ ...++.+.+|||||||||+|||||+++
T Consensus 82 v~Q~~~lf~~Ti~eNi~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~ 157 (241)
T d2pmka1 82 VLQDNVLLNRSIIDNISLANP----GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 157 (241)
T ss_dssp ECSSCCCTTSBHHHHHCTTST----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EecccccCCccccccccccCc----cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcc
Confidence 999999999999999998743 223455666666555421 234456789999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC-ChHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK-HPMAL 291 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~-~~~~~ 291 (298)
|+|||||||||+||+.+++.+++.|+++.+ |+|+|+||||++.+ +.||||++|++|+|++.|+++++.... +.+.+
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~ 234 (241)
T d2pmka1 158 PKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234 (241)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGGGG-TTSSEEEEEETTEEEEEECHHHHHHSTTCHHHH
T ss_pred cchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCCCHHHH
Confidence 999999999999999999999999999864 89999999999988 569999999999999999999997543 34444
Q ss_pred HHh
Q 022337 292 RFL 294 (298)
Q Consensus 292 ~~~ 294 (298)
.|.
T Consensus 235 l~~ 237 (241)
T d2pmka1 235 LYQ 237 (241)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-64 Score=449.85 Aligned_cols=223 Identities=33% Similarity=0.461 Sum_probs=198.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
+++ ++.|+|+ +.. + ||||+++ +|+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .+++||||
T Consensus 3 l~v-~~~k~~g-~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~--~~r~ig~v 75 (240)
T d2onka1 3 LKV-RAEKRLG-NFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP--ERRGIGFV 75 (240)
T ss_dssp EEE-EEEEEET-TEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT--TTSCCBCC
T ss_pred EEE-EEEEEEC-CEE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCH--HHcCceee
Confidence 677 6788984 433 4 8999995 68999999999999999999999999999999999999987764 36789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
||++.+|+. ||+||+.|+++.......++++.++++.+|+. ++.+++|.+|||||||||+|||||+++|++|||||||
T Consensus 76 ~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPt 154 (240)
T d2onka1 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred ccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcH-hhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCcc
Confidence 999999985 99999999875332223356799999999997 6899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHHHh
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
+||||.++..+++.|++++++.|.|+|+||||++++.++||||++|++|+|++.|+++++.++.+.....|+
T Consensus 155 s~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHHHHh
Confidence 999999999999999999877799999999999999999999999999999999999999765555555554
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-64 Score=451.53 Aligned_cols=223 Identities=29% Similarity=0.474 Sum_probs=194.1
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..|+++||+|+|+++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|++||+++..++...+|++
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence 359999999999643 359999999999999999999999999999999999999999999999999999998889999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHH---------HHHHHc--CCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVY---------KLLSLA--DLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
++||||+|.+|+.||+||+.++..... ...+.. +.++.+ +++ ...++.+.+|||||||||+||||
T Consensus 90 i~~v~Q~~~lf~~tv~eni~~g~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~-~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 90 VAAVGQEPQVFGRSLQENIAYGLTQKP---TMEEITAAAVKSGAHSFISGLPQGYD-TEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp EEEECSSCCCCSSBHHHHHHCSCSSCC---CHHHHHHHHHHHTCHHHHHTSTTGGG-CBCCSSCSSSCHHHHHHHHHHHH
T ss_pred hhhccccccccCcchhhhhhhhhcccc---hHHHHHHHHHHHHHHHHHHhccccch-hhHhccCccCChhHceEEEEeec
Confidence 999999999999999999999854221 122222 223333 332 34567788999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
|+++|+|||||||||+||+.++.++++.|.++.++.|+|+|+||||++.+. .||||++|++|+|++.|+++++.+....
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~~~~~ 244 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKKGC 244 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHHTSH
T ss_pred cccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 999999999999999999999999999999987767899999999999875 6999999999999999999999875443
Q ss_pred H
Q 022337 289 M 289 (298)
Q Consensus 289 ~ 289 (298)
+
T Consensus 245 y 245 (251)
T d1jj7a_ 245 Y 245 (251)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.3e-64 Score=454.23 Aligned_cols=220 Identities=27% Similarity=0.474 Sum_probs=197.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh-cc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR-RK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~-~~ 139 (298)
..+|+++||+|+|+ +.+||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...++.+.+ +.
T Consensus 2 M~iL~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 2 MEILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp CEEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred cceEEEEEEEEEEC-CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 34799999999994 67899999999999999999999999999999999999999999999999999888876654 45
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccC------------CCc---cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRG------------KKL---TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~------------~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv 203 (298)
|+|+||++.+|+. ||+||+.++..... ... ..+++.++++.+++. +..++++++|||||||||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~Qrv 159 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLV 159 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHH
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc-hhccCchhhCCcHHHHHH
Confidence 9999999998875 99999998743211 111 124677889999996 578999999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|||||+.+|++|||||||+||||.+++++++.|++++++ |+|||+||||++++.++||||++|++|+|+++|+++++.
T Consensus 160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 238 (254)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHH
T ss_pred HHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHh
Confidence 9999999999999999999999999999999999999764 999999999999999999999999999999999998864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.9e-63 Score=446.61 Aligned_cols=226 Identities=30% Similarity=0.476 Sum_probs=198.5
Q ss_pred eEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.|+++||+|+|+++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..++...+|++++
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 49999999999754 36999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|+||++.+|+.|+++|+.++.. ...+++++.++++..++.+ ...++++.+|||||||||+|||||++
T Consensus 93 ~v~Q~~~l~~~ti~~n~~~~~~---~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 93 LVSQNVHLFNDTVANNIAYART---EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp EECSSCCCCSSBHHHHHHTTTT---SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEeeccccCCcchhhhhhhcCc---ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999998742 1234566666666665532 23446678999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
+|+|||||||||+||+.++..+++.|+++.+ ++|+|+||||++.+ .+||||++|++|+|++.|+++++.+....+.+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~-~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~ 246 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTI-EQADEIVVVEDGIIVERGTHSELLAQHGVYAQ 246 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT-TTCSEEEEEETTEEEEEECHHHHHHHTSSHHH
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCcHHHH
Confidence 9999999999999999999999999999864 89999999999988 57999999999999999999999765444444
Q ss_pred HHh
Q 022337 292 RFL 294 (298)
Q Consensus 292 ~~~ 294 (298)
.+.
T Consensus 247 l~~ 249 (253)
T d3b60a1 247 LHK 249 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.1e-63 Score=442.57 Aligned_cols=230 Identities=28% Similarity=0.491 Sum_probs=205.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.|+++||+|+| ++++||+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+. ....++.+||
T Consensus 2 aI~v~nl~k~y-g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i~~ 79 (238)
T d1vpla_ 2 AVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLISY 79 (238)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTEEE
T ss_pred CEEEEeEEEEE-CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhhEeE
Confidence 48999999999 467899999999999999999999999999999999999999999999999998764 4567889999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+|+. |+.||+.+...+++... ..+.++++++.+++. +..++++.+||||||||++|||||+++|++||||
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD 158 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 158 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred eeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 9999999875 99999998765554432 235678889999996 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc--CChHHHHHhhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA--KHPMALRFLQL 296 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~--~~~~~~~~~~~ 296 (298)
|||+||||.++++++++|++++++ |+|||++|||++++..+||||++|++|+|++.|+++++.+. ...+.+.|.+.
T Consensus 159 EPt~gLD~~~~~~i~~~i~~~~~~-g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~~~~f~~~ 236 (238)
T d1vpla_ 159 EPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEV 236 (238)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCCchHHHHHHHh
Confidence 999999999999999999999765 99999999999999999999999999999999999998653 23455555543
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.9e-63 Score=444.16 Aligned_cols=225 Identities=34% Similarity=0.513 Sum_probs=199.4
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..|+++||+|+|+++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++...+|++|
T Consensus 15 g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 94 (255)
T d2hyda1 15 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 94 (255)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhee
Confidence 359999999999654 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||||++.+|+.||+|||.++.. ...++++.++++.+++.+. .....+.+||||||||++|||||+
T Consensus 95 ~~v~Q~~~lf~~Ti~eNi~~g~~----~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 95 GLVQQDNILFSDTVKENILLGRP----TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCS----SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred eeeeccccCCCCCHHHHHhccCc----CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999998742 2346678888888887421 122346789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
++|+|||||||||+||+.++..+++.|.++.+ ++|+|+||||++.+ ..||||++|++|+|++.|+++++.+....+.
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~~~-~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~ 247 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTI-THADKIVVIENGHIVETGTHRELIAKQGAYE 247 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGT-TTCSEEEEEETTEEEEEECHHHHHHTTSHHH
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCcHHH
Confidence 99999999999999999999999999999864 78999999999988 5799999999999999999999977544444
Q ss_pred HHH
Q 022337 291 LRF 293 (298)
Q Consensus 291 ~~~ 293 (298)
+.|
T Consensus 248 ~l~ 250 (255)
T d2hyda1 248 HLY 250 (255)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-56 Score=396.99 Aligned_cols=212 Identities=25% Similarity=0.372 Sum_probs=190.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++||+++| +|++|||+|++||++||+||||||||||+|+|+|+. |++|+|.++|+++..++..+++...+
T Consensus 2 ~il~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 2 IVMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred eEEEEECcccCc-----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 368999997544 699999999999999999999999999999999976 68999999999998888878888899
Q ss_pred EEeCCCCC-CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC-------CC
Q 022337 142 MLFQIPAL-FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN-------EP 213 (298)
Q Consensus 142 ~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~-------~p 213 (298)
|++|+... |..++++++.++... ....+.+.++++.+++. +..++++.+|||||||||+|||||++ +|
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p 151 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHD---KTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAG 151 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSC---TTCHHHHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTC
T ss_pred eeeccccCCccccHHHHhhhccch---hhHHHHHHHHHHhcCCH-hHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCC
Confidence 99998764 456999999876431 23456788999999997 57899999999999999999999997 77
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+||||||||+|||+.++..++++|++++++ |+|||++|||++.+.++|||+++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~gLD~~~~~~i~~~i~~l~~~-g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~ 221 (231)
T d1l7vc_ 152 QLLLLDEPMNSLDVAQQSALDKILSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221 (231)
T ss_dssp CEEEESSCSTTCCHHHHHHHHHHHHHHHHT-TCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhC
Confidence 999999999999999999999999999765 9999999999999999999999999999999999999865
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.4e-55 Score=396.80 Aligned_cols=208 Identities=25% Similarity=0.395 Sum_probs=169.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++++|+++ ++++||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++| +++|
T Consensus 38 ~i~~~~~~~---~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~~ 101 (281)
T d1r0wa_ 38 NVSFSHLCL---VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSF 101 (281)
T ss_dssp --CHHHHHH---TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEEE
T ss_pred cEEEEEcCC---CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEEE
Confidence 355555543 356899999999999999999999999999999999999999999999987 3899
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCC----------chhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+||++.+|+.||+||+.++... ...+..++++..++. +...++.+.+|||||||||+|||||+++
T Consensus 102 v~Q~~~l~~~tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 102 CSQFSWIMPGTIKENIIFGVSY-----DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp ECSSCCCCSEEHHHHHTTTSCC-----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EeccccccCceeeccccccccc-----cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999987532 233444444444332 1123456778999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 292 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~ 292 (298)
|+||||||||++||+.+++.+++.+.+... .++|+|+|||+++.+ ++||||++|++|+|++.|+++++......+...
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~ 254 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 254 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHHHCHHHHHH
T ss_pred ccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHhccCcHHHHH
Confidence 999999999999999999999886444333 389999999999877 579999999999999999999986543334333
Q ss_pred H
Q 022337 293 F 293 (298)
Q Consensus 293 ~ 293 (298)
|
T Consensus 255 ~ 255 (281)
T d1r0wa_ 255 L 255 (281)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.3e-53 Score=368.62 Aligned_cols=195 Identities=30% Similarity=0.476 Sum_probs=172.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.|+++||++.|+ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. +.+.+++|
T Consensus 2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~~ 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFF 74 (200)
T ss_dssp EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEE
T ss_pred eEEEEEEEEEeC--CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh-----HhcCcEEE
Confidence 489999999993 57999999999999999999999999999999999999999999999999975 35678999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
+||+..+++. |+.||+.+....++....++++.++++.+++.+ .++++.+|||||||||+|||||+.+|+++|||||
T Consensus 75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEP 152 (200)
T d1sgwa_ 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 152 (200)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred EeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCc
Confidence 9999988764 999999877655555556677888999998853 3567889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
|+|||+.++..+++.|.++.++.+.+||+++|++ .+||++.+|++
T Consensus 153 t~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 153 VVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp TTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 9999999999999999999877677777777775 47999988754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.83 E-value=3.8e-23 Score=172.02 Aligned_cols=156 Identities=11% Similarity=0.110 Sum_probs=106.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCC-----CCcccHHHHhHhCccccC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA-----LFEGTVVDNIRYGPQLRG 166 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~-----l~~~tv~eni~~~~~~~~ 166 (298)
.++|+||||||||||+|+|+|.++|+.|.+.+++.+.... .++.++..+... +...+......+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 70 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPET-----KKRTGFRIITTEGKKKIFSSKFFTSKKLV------ 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-----------CCEEEEEETTCCEEEEEETTCCCSSEE------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHH-----HHhhhhhhhhhhHHHHHHhhhhhhhhhhh------
Confidence 3789999999999999999999999999999988764322 122333222111 000000000000
Q ss_pred CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCc
Q 022337 167 KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246 (298)
Q Consensus 167 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~ 246 (298)
...+.. ....++|+|+++|.++++++..+|+++++|||.... .....+.+.+.++.++.+.
T Consensus 71 ------------~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~ 131 (178)
T d1ye8a1 71 ------------GSYGVN-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNV 131 (178)
T ss_dssp ------------TTEEEC-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTS
T ss_pred ------------hhhhcC-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCC
Confidence 011111 112258899999999999999999999999985443 3445666777776666689
Q ss_pred EEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 247 tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
++|+++|+... ..+|+++..+.+|++++.+.
T Consensus 132 ~il~~~h~~~~-~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 132 NVVATIPIRDV-HPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEEEECCSSCC-SHHHHHHHTCTTCEEEECCT
T ss_pred EEEEEEccHHH-HHhhceEEEEeCCEEEEECC
Confidence 99999999764 46899999999999987653
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=8.2e-14 Score=124.55 Aligned_cols=77 Identities=25% Similarity=0.332 Sum_probs=65.0
Q ss_pred CCCCChhHHHHHHHHHHH----cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 192 GGEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 192 ~~~LSgGqkQRv~iAral----~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
...+|+|||+...++..+ ..+|.++++|||-++|+|...+.+.+.|++..+ +.-+|++||.+..+. .+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~~-~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIVME-AADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGGG-GCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHH-hcccEEE
Confidence 467999999998776653 457799999999999999999999999999864 578999999998874 6899865
Q ss_pred --EeCC
Q 022337 268 --LVNG 271 (298)
Q Consensus 268 --l~~G 271 (298)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 5555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=5.6e-11 Score=109.49 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=62.6
Q ss_pred CCCChhHHHHHHHHHHH----cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 193 GEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral----~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
..||||||.++++|-.+ ..++++++||||+++||+.++..+.++|.++.. .+.-+|+|||++..+ ..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~~~~-~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMF-EKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHH-TTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHH-HhcccEEEE
Confidence 57899999998876544 567889999999999999999999999998753 356799999999866 579998755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.44 E-value=5.2e-07 Score=77.25 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=38.9
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
-+.+..++|+||+..|=|+.....+...+.+.-.+.+..++++||..+...
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 345667999999999999988777666654433334788999999987654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=1.1e-06 Score=75.67 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=37.7
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEccCHHHH
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~-l~~l~~~~g~tii~itHd~~~~ 258 (298)
+.+..++|+||+..|=++.....+... +..+..+.+..++++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 455569999999999999998887655 5556555467899999987643
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=3e-07 Score=74.50 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=29.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+++.+|++.+| +++|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467888888877 89999999999999999997443
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=3.3e-05 Score=66.32 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=37.0
Q ss_pred HHHcCCCCeEEEeCcCCC-----CCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 022337 207 RTLANEPEVLLLDEPTSA-----LDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254 (298)
Q Consensus 207 ral~~~p~illLDEPts~-----LD~~~~~~~~~~l~~l~~~~g~tii~itHd 254 (298)
..-..+|+++++|--++- -|......++..|++++++.++++|++.|-
T Consensus 127 ~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 127 KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 344579999999955431 266667788888888888889999999994
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.86 E-value=1.8e-05 Score=68.25 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=28.8
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
-+-|+++..=+.+|+++.|.|++|+|||||+.-++-
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 345555543479999999999999999999887763
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=6.7e-06 Score=65.10 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
+++|+|++|||||||++.|..-++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999865543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=7.9e-06 Score=66.55 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
|.++.|+||||||||||++.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987664
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.65 E-value=1.4e-05 Score=68.13 Aligned_cols=60 Identities=33% Similarity=0.393 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC---CEeCCCCCHHHHh-cceEEEeCCCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD---GRDITDLDVLSLR-RKVGMLFQIPAL 149 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~---g~~i~~~~~~~~~-~~ig~v~Q~~~l 149 (298)
+|+..+++|+||+|||||++.|.|-..-..|+|.-. |+.-+... .-+. ..=|++-+.|-+
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~-~l~~l~~gg~iiDTPG~ 157 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA-QLLKFDFGGYVVDTPGF 157 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSC-CEEECTTSCEEESSCSS
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccce-eEEEECCCcEEEeCCcc
Confidence 689999999999999999999999777777777532 33322211 1111 123778777754
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.64 E-value=9.5e-05 Score=62.03 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=42.9
Q ss_pred CCCCeEEEeCcC---CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH----------HHHHhhcCEEEEEeC
Q 022337 211 NEPEVLLLDEPT---SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI----------KQIQRIADVVCLLVN 270 (298)
Q Consensus 211 ~~p~illLDEPt---s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~----------~~~~~~~d~v~vl~~ 270 (298)
.+|++++.|--+ .+.+..........|.+++++.+.+++++.|-. ..+..+||-|+.++.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence 578999988643 344666666677777777777799999988742 234567999988753
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.62 E-value=1.4e-05 Score=63.53 Aligned_cols=35 Identities=37% Similarity=0.433 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
.|.++.|.||+||||||+.+.|+..+.. --+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecH
Confidence 5899999999999999999999986532 1345555
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=4.9e-06 Score=66.31 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=28.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
.+.|.||+|+|||||++.++..+....+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4789999999999999999999987766665543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.56 E-value=1.7e-05 Score=62.83 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+|-++.|+|++||||||+.+.|+--+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=2e-05 Score=62.44 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.+.++.|.||+||||||+.+.|+.-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.48 E-value=1.3e-05 Score=64.00 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPP 117 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~ 117 (298)
.+++|+|++|||||||++-|...++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 378999999999999999888776653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.46 E-value=3.1e-05 Score=69.94 Aligned_cols=28 Identities=36% Similarity=0.679 Sum_probs=23.3
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHh
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
++++.++.+.+|+|||||||||++.+|.
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445656699999999999999999984
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.45 E-value=1.4e-05 Score=68.24 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i 123 (298)
+|...+++|+||+|||||+|.|.|-..-..|.|.=
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 68899999999999999999999977666777753
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.40 E-value=3.3e-05 Score=61.30 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..++|+||.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999865
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=4.2e-05 Score=63.95 Aligned_cols=26 Identities=38% Similarity=0.634 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|.++.|+||||||||||++.|.--.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999887543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.39 E-value=4.3e-05 Score=60.54 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++|-.++|.||+||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.35 E-value=5.4e-05 Score=59.73 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999874
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=4.7e-05 Score=59.05 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.|+||+||||||+.|.|+--+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999998765
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.31 E-value=0.00061 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHh
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 556799999999999999999875
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.30 E-value=5.2e-05 Score=61.13 Aligned_cols=24 Identities=42% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
++||-||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986554
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.28 E-value=5.9e-05 Score=58.60 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=19.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~g 112 (298)
+++.|.|++|||||||.+-|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999997753
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.28 E-value=6.6e-05 Score=59.63 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPS 118 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~ 118 (298)
+.+++|.|+.||||||+.+.|+-.+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 36899999999999999999987654433
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=4.5e-05 Score=61.57 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.21 E-value=7.9e-05 Score=58.42 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=25.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
.++.|.||+||||||+.+.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 3688999999999999999997653 3455544
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.19 E-value=7.7e-05 Score=58.71 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++|+||+||||||+.+.|+--+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.15 E-value=0.00018 Score=57.85 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.+||+|+.|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999874
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.12 E-value=9.7e-05 Score=60.19 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|||||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999985
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.11 E-value=0.0001 Score=60.03 Aligned_cols=22 Identities=55% Similarity=0.792 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.|+||||||||||++.|+.-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999986543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.03 E-value=0.0008 Score=56.29 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=15.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
...+++++||+|+||||.+-=|+-.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999886666643
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.03 E-value=0.00015 Score=60.55 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.02 E-value=0.00036 Score=60.27 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++..-+.|.||+|+|||+|.+.+++.+
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 334448899999999999999999876
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.01 E-value=0.00015 Score=59.43 Aligned_cols=21 Identities=52% Similarity=0.759 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
++|+||||||||||.+.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998653
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00018 Score=58.43 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl 113 (298)
..+.|+||||+|||||++-|..-
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.00 E-value=0.00018 Score=57.28 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.00017 Score=59.65 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++||-|++|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.96 E-value=0.00016 Score=57.92 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.95 E-value=0.00019 Score=58.25 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..+++|+||.||||||+.+.|+--+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999998644
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.94 E-value=0.00019 Score=57.03 Aligned_cols=22 Identities=55% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.|+|++||||||+.|.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.93 E-value=0.00012 Score=59.01 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
+||+|+.++|||||++.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999873
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00021 Score=56.82 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999983
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0003 Score=56.48 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
|++|+++.|.||+|||||||.--++.-
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999998877653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.90 E-value=0.00023 Score=56.97 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|+|+.|+|||||++.|.|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.87 E-value=0.00021 Score=57.02 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.|+|++||||||+.+.|+--+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999998543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.87 E-value=0.00022 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999984
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.87 E-value=0.00017 Score=57.16 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|++|||||||++.+.+=.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.00026 Score=57.62 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+-.++.|+||.||||||+.+.|+.-+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999999866
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.84 E-value=0.0002 Score=57.48 Aligned_cols=21 Identities=43% Similarity=0.787 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
+||+|+.|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999885
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.83 E-value=0.00023 Score=57.98 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++++.++.|+||.||||||+.+.|+--+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577899999999999999999998754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.00025 Score=57.72 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|||||||++.|.|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.82 E-value=0.00025 Score=54.89 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
+.|+|++|||||||++.+.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998763
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.82 E-value=0.00025 Score=55.23 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh
Q 022337 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 199 qkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~ 242 (298)
+.-+-.++..++.+..+-++ |+|+.+-.+..++++.|.+..+
T Consensus 125 ~~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 125 SEMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp HHHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHHHH
Confidence 33444555666666666565 9999999999999888866544
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.0017 Score=55.97 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=30.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCCccEEEECCEe
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPPSGTVFLDGRD 127 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~i~g~~ 127 (298)
=|++|.++-|.||+|||||||.-.++.-. ++..--+++|.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 47899999999999999999976666544 3333345666553
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.81 E-value=0.00027 Score=56.22 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 677899999999999999997763
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.79 E-value=0.00037 Score=56.36 Aligned_cols=25 Identities=44% Similarity=0.764 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
++|=.+.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677889999999999999999994
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.76 E-value=0.00032 Score=55.64 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.|+|+.||||||+.|.|+--+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998655
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00039 Score=56.27 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0004 Score=54.23 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.|.|-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.70 E-value=0.00032 Score=62.52 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=29.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i 123 (298)
+.|.-+.|.||.|||||||++.|++.++|+.=-|.+
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 344558999999999999999999999876655555
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.70 E-value=0.0003 Score=56.93 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.00024 Score=56.36 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.++|||||++.|.|-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998853
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.64 E-value=0.00047 Score=54.96 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999996644
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0005 Score=56.25 Aligned_cols=30 Identities=40% Similarity=0.632 Sum_probs=23.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC---CCCccEE
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW---EPPSGTV 121 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~---~p~~G~I 121 (298)
+++|.||.||||||+-+.|+--+ .-+.|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 89999999999999999998644 3344554
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.60 E-value=0.00047 Score=55.77 Aligned_cols=22 Identities=50% Similarity=0.696 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++||.|+.||||||+.+.|.-+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999998743
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.59 E-value=0.0004 Score=56.26 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.=+++|-|+.||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999865
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.58 E-value=0.00059 Score=54.85 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+||+|+..||||||++.|.|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999743
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.57 E-value=0.00053 Score=56.46 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|-||.||||||+.+.|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999998744
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.00041 Score=57.70 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999774
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.56 E-value=0.00051 Score=57.38 Aligned_cols=26 Identities=35% Similarity=0.681 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.+++++||+|+||||.+-=|+..+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999876666544
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.56 E-value=0.00057 Score=55.42 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.54 E-value=0.00073 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 37899999999999999998854
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.52 E-value=0.00047 Score=58.18 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
..+.+.||.|||||||.+.|++-+. .+-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence 3588999999999999999999764 33455554
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.51 E-value=0.00064 Score=54.55 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999754
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.49 E-value=0.012 Score=50.67 Aligned_cols=41 Identities=37% Similarity=0.604 Sum_probs=30.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEEECCE
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVFLDGR 126 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~i~g~ 126 (298)
=|+.|.++-|.||+|||||||.-.++....-..| -++||.+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3789999999999999999999887775432223 3445443
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.45 E-value=0.0006 Score=58.45 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|.+|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38899999999999999999853
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.00079 Score=55.34 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|.+++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.00081 Score=55.80 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
++|-+++|-|+-||||||+.+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999887553
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.0018 Score=51.07 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=22.0
Q ss_pred EEEEcCCCccHHHHHHHHhc-----CCCCCccE
Q 022337 93 MGIIGPSGSGKSTLLRALNR-----LWEPPSGT 120 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g-----l~~p~~G~ 120 (298)
++++|..|+|||||++-+.+ -+.|+-|.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 68999999999999997765 24465553
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.38 E-value=0.00023 Score=55.56 Aligned_cols=22 Identities=45% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999884
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.38 E-value=0.00085 Score=55.73 Aligned_cols=42 Identities=33% Similarity=0.397 Sum_probs=31.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDIT 129 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~ 129 (298)
++|-++-|.|.+|||||||.+.|.--+.. ..-.+.++|..++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 57889999999999999999999753321 1235778887654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.36 E-value=0.00079 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.00084 Score=53.59 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.|+||.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999998543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.00054 Score=60.63 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
++||-|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 789999999999999999988763
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.32 E-value=0.00098 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.32 E-value=0.0009 Score=55.04 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
++||.|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.30 E-value=0.00082 Score=54.90 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|||||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.30 E-value=0.0011 Score=54.66 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
+++|+++-|.||.|||||||..-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999999999987753
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.24 E-value=0.00077 Score=56.48 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=20.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.+--+++++||+|+||||.+-=|+-.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34558899999999999876555543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.23 E-value=0.00097 Score=52.41 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.0
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|++|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999997765
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.23 E-value=0.0012 Score=54.80 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
+|.+++|-|+-||||||+.+.|.-.+.. +|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence 7999999999999999999999977653 4433
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.19 E-value=0.0011 Score=55.04 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.|.||+|+||||++++++.-+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998754
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.0013 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.+.|.||+|+||||++++|+.-+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 477999999999999999998654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.00092 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-.+++++||+|+||||.+-=|+-.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999998776666544
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.13 E-value=0.0012 Score=52.23 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.13 E-value=0.0014 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhc
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
.+.++.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 567899999999999999998764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0015 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.|+||.||||||+.+.|+--+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998644
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.09 E-value=0.0015 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.06 E-value=0.0014 Score=54.24 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
+.|.||+|+||||++++++.-
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999974
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.05 E-value=0.0013 Score=51.88 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++-+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.00077 Score=60.07 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
+.-++||.||.|||||||+..|...+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999986543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.03 E-value=0.0013 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.02 E-value=0.002 Score=52.68 Aligned_cols=59 Identities=24% Similarity=0.194 Sum_probs=39.2
Q ss_pred CCCCeEEEeCcCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEccCHH---------HHHhhcCEEEEEe
Q 022337 211 NEPEVLLLDEPTSAL----DPISTQNIEDVLVKLKKKHGMTIVMVSHSIK---------QIQRIADVVCLLV 269 (298)
Q Consensus 211 ~~p~illLDEPts~L----D~~~~~~~~~~l~~l~~~~g~tii~itHd~~---------~~~~~~d~v~vl~ 269 (298)
.+|+++++|=-++-. +.......+..+.+..++.+.|+++++|... .....+|.++.++
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 478999999655432 3444444555555555666999999888542 3556789988775
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.02 E-value=0.0017 Score=59.17 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=21.1
Q ss_pred EEEEcCCCccHHHHHHHHhcCCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
+||+|++|+|||||+|.|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 89999999999999999999643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0027 Score=50.04 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=23.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc-----CCCCCccEEE
Q 022337 92 IMGIIGPSGSGKSTLLRALNR-----LWEPPSGTVF 122 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g-----l~~p~~G~I~ 122 (298)
.++|+|.+|+|||||++-+.+ -+.|+.|...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 42 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce
Confidence 388999999999999987654 2345655443
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.0017 Score=53.45 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++||.|+.||||||..+++..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999998643
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.0016 Score=51.79 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=18.2
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997765
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0021 Score=50.53 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
++++|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0047 Score=48.56 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.87 E-value=0.0015 Score=54.30 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=26.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
+.+.||.|+||||+.++|+.-+....+ .+++.+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~~ 71 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPVL 71 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCcc--cccCccc
Confidence 679999999999999999987765543 3445443
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0021 Score=53.16 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
|++|.++.|.||+|||||||.-.++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999887763
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.87 E-value=0.0022 Score=53.17 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHh
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
+++|+++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999976443
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.86 E-value=0.0023 Score=52.42 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
+++|+++.|.|++|+|||||.--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0023 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.456 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999988763
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.81 E-value=0.0023 Score=53.20 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
...++.++||+|+||||.+-=|+-.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35588999999999998887777544
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.78 E-value=0.0022 Score=53.62 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++||+|...||||||++.|.+-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999873
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.78 E-value=0.002 Score=56.54 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=27.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
+++ -+.++||+|||||+|.|.|+..+. .--+.+++-.+
T Consensus 48 ~~~-~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~ 85 (309)
T d1ofha_ 48 TPK-NILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKF 85 (309)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGG
T ss_pred CCc-eEEEECCCCCCHHHHHHHHhhccc--cchhccccccc
Confidence 344 456999999999999999998753 22455555443
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.78 E-value=0.0029 Score=49.55 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.002 Score=50.62 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.002 Score=50.57 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
++++|++|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.76 E-value=0.0021 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
+.+.||.|+||||+.+++++-+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998654
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.73 E-value=0.0011 Score=57.94 Aligned_cols=24 Identities=29% Similarity=0.710 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
++||.|+|||||||+.+.|.-++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999887653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.72 E-value=0.0025 Score=53.08 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=24.5
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCcc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSG 119 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G 119 (298)
..+.|.||.|+||||+++.|+..++...+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 47889999999999999999987764444
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.0022 Score=50.72 Aligned_cols=21 Identities=43% Similarity=0.532 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
++++|++|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 779999999999999987653
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.71 E-value=0.0029 Score=50.36 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..++|.+++|-|+=|||||||.|.++.-+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 457999999999999999999999987653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0026 Score=50.09 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++++|+.|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998864
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.69 E-value=0.0027 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.66 E-value=0.0025 Score=50.90 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|..|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0032 Score=49.71 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=17.6
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999976654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0024 Score=50.40 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++|+|+.|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0026 Score=49.88 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988865
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.62 E-value=0.0017 Score=51.82 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 377999999999999998864
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0056 Score=48.80 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999997665
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0042 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.++|+.|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.0027 Score=49.60 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|..|+|||||++-+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0038 Score=53.40 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
.-+.+.||+|||||+|.+.|+.-+... -+.++..++
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CeEEeeCCCCCCccHHHHHHHHHcCCC--EEEEEhHHh
Confidence 347799999999999999999865321 244554443
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.54 E-value=0.003 Score=49.27 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.003 Score=49.50 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=18.0
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++|+|+.|+|||||++-+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.49 E-value=0.0032 Score=49.43 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++|+|..|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0031 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.+.|+|++|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999887753
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.42 E-value=0.0065 Score=49.12 Aligned_cols=33 Identities=36% Similarity=0.410 Sum_probs=25.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++.--+.+ .|.-+.|.||||+|||||.-.+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 355555666 777899999999999999877653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.0036 Score=51.63 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=29.1
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~ 257 (298)
+.+++++||.-. +....+..+...+.+... ...+++++++.+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~--~~~~i~~~~~~~~ 143 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSN--STRFAFACNQSNK 143 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTT--TEEEEEEESCGGG
T ss_pred ceEEEEEecccc-cchhHHHHHhhhcccccc--ceeeeeccCchhh
Confidence 357999998664 556667777776665432 5667788877754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.40 E-value=0.0028 Score=54.67 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=31.8
Q ss_pred EEEEEcCCCccHHHHHHHH---hcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 92 IMGIIGPSGSGKSTLLRAL---NRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l---~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
-+||+|+.|||||||+..| +|.. ...|+|. +|..+.++...+..+.+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~-~~~g~v~-~g~~~~D~~~~E~~r~~ 53 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAK-ERRGRVE-EGTTTTDYTPEAKLHRT 53 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCGG-GTCCSSCCSHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCc-hhhccch-hccccccchHHHHHhCC
Confidence 3799999999999999999 4443 2445553 45555555565555543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.0036 Score=49.10 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=18.0
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++|+|..|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.39 E-value=0.0079 Score=48.57 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=24.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++.--+.+ .|.-+.|.|+||+|||||.-.+..
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 445444544 677789999999999999876653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.0036 Score=49.67 Aligned_cols=20 Identities=50% Similarity=0.682 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.34 E-value=0.0073 Score=47.49 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=18.0
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
+.++|+.|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998765
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.34 E-value=0.0035 Score=53.19 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
-+.|.||.|||||++.+.|+.-
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4779999999999999999963
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.0035 Score=52.21 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
+.+++++||.-. |.......+.+.+.+... ...+|++|++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~--~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSK--NIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT--TEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccccc--cccceeeecccc
Confidence 567999999865 888888888888776532 466899998875
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.0035 Score=50.66 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998775
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.29 E-value=0.004 Score=48.92 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997664
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.26 E-value=0.0044 Score=54.82 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.-++||.||-|||||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.004 Score=49.27 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0042 Score=54.13 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=28.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
|.=+.|.+|+..+|+|++|+|||||+..|+.-.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 344679999999999999999999999998744
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.23 E-value=0.0028 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.+.++|++|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999876443
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.19 E-value=0.005 Score=53.62 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0047 Score=50.78 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=30.4
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~ 257 (298)
.+++++||.- .+.......++..|.+..+ ..-++++|++...
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~--~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK--NTRFCVLANYAHK 141 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT--TEEEEEEESCGGG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhccc--ceeeccccCcHHH
Confidence 4699999975 5778888888888877643 4556777766543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.0045 Score=49.36 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++|+|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999987664
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.0042 Score=48.94 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.14 E-value=0.0095 Score=46.75 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998754
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.0032 Score=49.74 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=17.3
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++-+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.10 E-value=0.0043 Score=56.44 Aligned_cols=28 Identities=39% Similarity=0.385 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.++..+.+.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3566899999999999999999988653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.06 E-value=0.0049 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.+.||.|+|||+|.|.|+.-+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999743
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.04 E-value=0.0058 Score=48.36 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=24.9
Q ss_pred EEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 93 MGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
+.++|..|+|||||++-+..-..|+.|..
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 68999999999999999887777877744
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.0069 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998884
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.99 E-value=0.0055 Score=50.70 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=22.3
Q ss_pred EEEEEcCCCccHHHHHHHH-hcCCCCCcc
Q 022337 92 IMGIIGPSGSGKSTLLRAL-NRLWEPPSG 119 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l-~gl~~p~~G 119 (298)
.+.|+|++|+|||||++-+ .+-..||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 4679999999999999876 444567766
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0057 Score=48.00 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999996644
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=0.0037 Score=49.42 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=8.5
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|..|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999986665
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.90 E-value=0.0061 Score=48.66 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=22.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc--CCCCCcc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR--LWEPPSG 119 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g--l~~p~~G 119 (298)
.+.|+|.+|+|||||++-+.- -..||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 367999999999999998832 2357888
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.85 E-value=0.0046 Score=51.71 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0059 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-+++|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999864
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.0067 Score=47.44 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.0
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|..|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.78 E-value=0.0035 Score=55.09 Aligned_cols=26 Identities=38% Similarity=0.448 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.-+.|+||.|+|||||+|.++++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 45789999999999999999999976
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.007 Score=48.34 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++|+|..|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999987653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.75 E-value=0.0066 Score=51.62 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=23.5
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+..++| +-|.||.|+|||+|++.++.-.
T Consensus 34 g~~~~~g--iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 34 GVKPPRG--ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCce--eEEecCCCCCchHHHHHHHHHh
Confidence 3344555 7799999999999999999954
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.71 E-value=0.0082 Score=49.79 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
++||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.69 E-value=0.0059 Score=56.34 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
-+.++||+|||||-|.|.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 377999999999999999999774
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.68 E-value=0.0095 Score=48.06 Aligned_cols=22 Identities=41% Similarity=0.912 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.57 E-value=0.0081 Score=47.78 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=17.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.+.++|++|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 367999999999999975544
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0083 Score=48.06 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.4
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++-+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999976653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.30 E-value=0.0099 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=22.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC-CC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE-PP 117 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~-p~ 117 (298)
.++++|.-.||||||++.|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999999999999999763 54
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.28 E-value=0.0096 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999965
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.013 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.+++|=|+=||||||+++.|.--+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3789999999999999999997653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.03 E-value=0.021 Score=45.67 Aligned_cols=31 Identities=42% Similarity=0.425 Sum_probs=22.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
++..-+. -.|.-+.|.|+||+|||||.-.+.
T Consensus 6 ~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 6 LHGVLVD-VYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EESEEEE-ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4443333 467789999999999999885554
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.00 E-value=0.014 Score=51.09 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=25.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~ 124 (298)
..+.++||+|+|||.|.|.|+..+. .--|.+|
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d 84 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG--IELLRFD 84 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEE
T ss_pred eEEEEECCCcchhHHHHHHHHhhcc--CCeeEec
Confidence 3578999999999999999999864 2345554
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.97 E-value=0.01 Score=51.14 Aligned_cols=42 Identities=29% Similarity=0.540 Sum_probs=30.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccE-EEECCEe
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-VFLDGRD 127 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~-I~i~g~~ 127 (298)
=++.|.++-|.||+|||||||.-.++....-..|. |+||.+.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 48899999999999999999975555444333444 5566554
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.73 E-value=0.015 Score=50.54 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=35.1
Q ss_pred CCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH
Q 022337 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
..++.-+.+++.-..-+...|-++++=.- |....+.+-+..+.. ++.+..++-++...+..
T Consensus 196 ~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~----d~~~~e~~~~~~~~~-~~~~~~vi~~sa~~E~~ 256 (319)
T d1wxqa1 196 TKWSQDDLLAFASEIRRVNKPMVIAANKA----DAASDEQIKRLVREE-EKRGYIVIPTSAAAELT 256 (319)
T ss_dssp GGCCHHHHHHHHHHHHHHHSCEEEEEECG----GGSCHHHHHHHHHHH-HHTTCEEEEECHHHHHH
T ss_pred hhcCHHHHHHhHHHhhhhcCchhhhcccc----cchhhHHHHHHHHHH-hhcCCEEEEecHHHHHH
Confidence 35677777777777767778877774321 111223333333333 34477888777776644
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.58 E-value=0.017 Score=51.67 Aligned_cols=30 Identities=43% Similarity=0.469 Sum_probs=27.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.++++.++.+.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 457888999999999999999999999874
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.53 E-value=0.02 Score=49.38 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=32.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC-CCCCccEEEE
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL-WEPPSGTVFL 123 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl-~~p~~G~I~i 123 (298)
.++ |.=+.+-+|+..+|+|++|+|||||+..++.- .+-+.+.+.+
T Consensus 57 raI-D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~ 102 (276)
T d2jdid3 57 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 102 (276)
T ss_dssp HHH-HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEE
T ss_pred eee-eeeccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Confidence 344 34467999999999999999999997777643 3334444434
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.40 E-value=0.019 Score=45.38 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=21.3
Q ss_pred EEEEcCCCccHHHHHHHHhcC---CCCCcc
Q 022337 93 MGIIGPSGSGKSTLLRALNRL---WEPPSG 119 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl---~~p~~G 119 (298)
+.++|..|+|||||++-+..- +.||-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 679999999999999988543 345555
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.35 E-value=0.018 Score=47.03 Aligned_cols=20 Identities=45% Similarity=0.617 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
+||+|.-+||||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.35 E-value=0.017 Score=49.92 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=27.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC------------CCCccEEEECC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW------------EPPSGTVFLDG 125 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~------------~p~~G~I~i~g 125 (298)
.+||||..-||||||++.|++-- .|.-|.|.+.+
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 48999999999999999999753 34568776543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.08 E-value=0.029 Score=45.51 Aligned_cols=24 Identities=33% Similarity=0.828 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
-+||+|.=.+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.07 E-value=0.04 Score=46.91 Aligned_cols=34 Identities=41% Similarity=0.591 Sum_probs=27.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC-----------CCCccEEEECC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW-----------EPPSGTVFLDG 125 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~-----------~p~~G~I~i~g 125 (298)
.+||||-.-+|||||++.|++-- .|.-|.|.+.+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d 48 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence 58999999999999999999542 45568876543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.99 E-value=0.023 Score=48.99 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHH---hcCCCCCccEE
Q 022337 92 IMGIIGPSGSGKSTLLRAL---NRLWEPPSGTV 121 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l---~gl~~p~~G~I 121 (298)
-+||+|+.|||||||...| +|..+ ..|++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v 39 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEV 39 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C----
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-cccce
Confidence 3799999999999999988 45543 23444
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.021 Score=47.27 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++.|.|.=|||||||++-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999998874
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.72 E-value=0.03 Score=47.78 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.025 Score=50.73 Aligned_cols=42 Identities=29% Similarity=0.346 Sum_probs=28.6
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~ 260 (298)
++++||.-+-.... .+.+++.+.. +.|..+++++++++.+..
T Consensus 279 ~l~lDE~~~~~~~~---~l~~~l~~~R-k~Gv~~~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 279 WLFIDELASLEKLA---SLADALTKGR-KAGLRVVAGLQSTSQLDD 320 (433)
T ss_dssp EEEESCGGGSCBCS---SHHHHHHHCT-TTTEEEEEEESCHHHHHH
T ss_pred EEEechHhhhcccH---HHHHHHHHhC-CCCceEEEEeccHHHHHH
Confidence 68889975543322 2455566554 469999999999887643
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.54 E-value=0.031 Score=45.98 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=30.8
Q ss_pred cCCCCeEEEeCcCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 022337 210 ANEPEVLLLDEPTSA-LDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254 (298)
Q Consensus 210 ~~~p~illLDEPts~-LD~~~~~~~~~~l~~l~~~~g~tii~itHd 254 (298)
+...++|++|+--.= =++..+..+..++....+. |+.+|+++..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~-~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhc-cceEEEecCC
Confidence 457888888886432 2466777888888877654 7777777763
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.032 Score=46.32 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=32.7
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
.+++|+||.-. |+..+...++..+.+... +..+|++|++.+.+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~--~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPE--HVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCT--TEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCC--CeEEEEEcCCcccc
Confidence 45999999965 888888888777765432 67889999887643
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=92.29 E-value=0.025 Score=50.52 Aligned_cols=28 Identities=39% Similarity=0.760 Sum_probs=23.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++++.++ ++||+|+|||-|.|.|+.++
T Consensus 65 ~~p~~niL-fiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 65 ELSKSNIL-LIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp TCCCCCEE-EECCTTSSHHHHHHHHHHHT
T ss_pred cCCCccee-eeCCCCccHHHHHHHHHhhc
Confidence 34566554 88999999999999999876
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=92.22 E-value=0.033 Score=47.91 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=32.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i 123 (298)
.++ |.=+.|-+|+..+|+|++|+|||+|+..+.--..-+...+.+
T Consensus 56 ~~I-D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~ 100 (276)
T d1fx0a3 56 IAI-DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY 100 (276)
T ss_dssp TTT-TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred eEE-eccccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeee
Confidence 344 344679999999999999999999998655444444444444
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.21 E-value=0.037 Score=45.14 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~ 257 (298)
.+++|+||.-. |...+...+++.+.+-.+ +..+|++|++.+-
T Consensus 109 ~kviIide~d~-l~~~a~n~Llk~lEep~~--~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 109 AKVVWVTDAAL-LTDAAANALLKTLEEPPA--ETWFFLATREPER 150 (207)
T ss_dssp CEEEEESCGGG-BCHHHHHHHHHHHTSCCT--TEEEEEEESCGGG
T ss_pred cceEEechhhh-hhhhhhHHHHHHHHhhcc--cceeeeeecChhh
Confidence 67999998754 667778888877776532 5667889999763
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.46 E-value=0.047 Score=47.62 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.5
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCC-CCccEEEECCEe
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWE-PPSGTVFLDGRD 127 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~-p~~G~I~i~g~~ 127 (298)
-.+.++||+|+|||.|.|.|+-.+. ....-+.+|.-.
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~ 91 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 91 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred eEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 3577999999999999999998762 234456665433
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.39 E-value=0.069 Score=47.04 Aligned_cols=32 Identities=28% Similarity=0.240 Sum_probs=25.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEE
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i 123 (298)
.+.|=|+=||||||+++.|..-+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 46788999999999999999987655444433
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.10 E-value=0.048 Score=47.85 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=24.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+-+-...++| ++.+.||.|+|||.|.+.|++-.
T Consensus 115 ~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 115 EFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 3334556666 55568999999999999999853
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.06 E-value=0.056 Score=46.21 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
-+.||||.|+|||+++.-++..
T Consensus 41 n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999988864
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.98 E-value=0.06 Score=43.83 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-+.||||.|.|||+++.-|+..+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 36799999999999999998754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.85 E-value=0.056 Score=43.79 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 022337 93 MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+||+|.-++|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7999999999999999998643
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=90.31 E-value=0.063 Score=46.84 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=18.0
Q ss_pred eCCcEEEEEcCCCccHHHHH
Q 022337 88 PKGVIMGIIGPSGSGKSTLL 107 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLl 107 (298)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999976
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.29 E-value=0.068 Score=43.95 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCCeEE----EeCcCCCCCHHHHHHHHHHHHHHHh
Q 022337 202 RVALARTLANEPEVLL----LDEPTSALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 202 Rv~iAral~~~p~ill----LDEPts~LD~~~~~~~~~~l~~l~~ 242 (298)
.+.+++++ ..+.+++ +|.....-|....+.+.+.+.++..
T Consensus 132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~ 175 (224)
T d1jnya3 132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMR 175 (224)
T ss_dssp HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHH
Confidence 45566655 5667777 8988877887777777777766543
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=90.26 E-value=0.062 Score=45.79 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=29.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
..++--++.|.||-++||||++++|..++ ++.|.+
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~ 134 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV 134 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc
Confidence 34667789999999999999999999998 666543
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=90.06 E-value=0.066 Score=46.84 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCccHHHHH
Q 022337 89 KGVIMGIIGPSGSGKSTLL 107 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLl 107 (298)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5889999999999999975
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.89 E-value=0.053 Score=46.78 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=25.4
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHh
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
|.=+.+-+|+..+|+|+.|+|||||+.-++
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 344789999999999999999999976444
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.72 E-value=0.07 Score=46.95 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=27.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR 126 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~ 126 (298)
.++|=|+=||||||+++.|.-.+......|.+-.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~E 41 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGE 41 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeC
Confidence 47899999999999999999887655445554333
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=89.39 E-value=0.083 Score=46.42 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.++|=|+=||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 378899999999999999997654
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.80 E-value=0.099 Score=45.73 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=18.1
Q ss_pred eCCcEEEEEcCCCccHHHHH
Q 022337 88 PKGVIMGIIGPSGSGKSTLL 107 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLl 107 (298)
+.|++..+.|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 36889999999999999997
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=88.59 E-value=0.041 Score=40.49 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.0
Q ss_pred EeCCcEEEEEcCCCccHHHHH
Q 022337 87 IPKGVIMGIIGPSGSGKSTLL 107 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLl 107 (298)
+++|+.+.|.+|.|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 468999999999999999544
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=88.33 E-value=0.13 Score=42.48 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHh
Q 022337 93 MGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~ 111 (298)
++++|.-.+|||||+..|+
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999995
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=87.82 E-value=0.1 Score=44.30 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.4
Q ss_pred EEEEEcCCCccHHHHH
Q 022337 92 IMGIIGPSGSGKSTLL 107 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLl 107 (298)
.+.|.|+-||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3668999999999865
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=87.54 E-value=0.22 Score=43.94 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCccHHHHHH
Q 022337 89 KGVIMGIIGPSGSGKSTLLR 108 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk 108 (298)
.+.++.|.||-|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 36799999999999999874
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=87.35 E-value=0.13 Score=43.12 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=24.0
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~it 252 (298)
+......+.++++.||.=- +++...+. +..+... +..++++-
T Consensus 199 ~~~~~~~~~~~i~vDE~QD-~~~~~~~~----l~~~~~~-~~~~~~~G 240 (306)
T d1uaaa1 199 VRKRWQNKIRYLLVDEYQD-TNTSQYEL----VKLLVGS-RARFTVVG 240 (306)
T ss_dssp HHHHHHTTCSEEEESCGGG-CBHHHHHH----HHHHHTT-TCCEEEEC
T ss_pred HHHHHHHHhhHHHHHHHHH-hhHHHHhh----hhhcccC-CCcceEee
Confidence 3445556889999999754 55544332 3334333 44555544
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.93 E-value=0.16 Score=42.33 Aligned_cols=19 Identities=42% Similarity=0.414 Sum_probs=17.5
Q ss_pred EEEEcCCCccHHHHHHHHh
Q 022337 93 MGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~ 111 (298)
++|+|.-++|||||+..|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7899999999999998884
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.72 E-value=0.18 Score=40.57 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=38.3
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHH-HHhhcCEEEEE
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-IQRIADVVCLL 268 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~-~~~~~d~v~vl 268 (298)
.+|+++||.- .|...+...++..|.+-.+ +..+|++|++.+. ...+-.|+..+
T Consensus 80 ~KviIId~ad-~l~~~aqNaLLK~LEEPp~--~t~fiLit~~~~~ll~TI~SRC~~i 133 (198)
T d2gnoa2 80 RKYVIVHDCE-RMTQQAANAFLKALEEPPE--YAVIVLNTRRWHYLLPTIKSRVFRV 133 (198)
T ss_dssp SEEEEETTGG-GBCHHHHHHTHHHHHSCCT--TEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred CEEEEEeCcc-ccchhhhhHHHHHHhCCCC--CceeeeccCChhhCHHHHhcceEEE
Confidence 5899999965 4889999999888887543 6778999998763 33334554444
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=86.55 E-value=0.096 Score=44.06 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=20.6
Q ss_pred EeCCcEEEEEcCCCccHHH--HHHHHhc
Q 022337 87 IPKGVIMGIIGPSGSGKST--LLRALNR 112 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKST--Llk~l~g 112 (298)
+.+|+.+.|.+|.|||||+ |..++..
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~ 33 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVRE 33 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 5689999999999999997 3455443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=86.45 E-value=0.13 Score=38.25 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=22.9
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~ 241 (298)
...+-+++|+||-= .+|..+...+...++.+.
T Consensus 91 ~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~ 122 (136)
T d1a1va1 91 SGGAYDIIICDECH-STDATSILGIGTVLDQAE 122 (136)
T ss_dssp GGCCCSEEEEETTT-CCSHHHHHHHHHHHHHTT
T ss_pred hhhcCCEEEEeccc-ccCHHHHHHHHHHHHHHH
Confidence 34567999999996 478877766666666543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.41 E-value=0.15 Score=44.87 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHh---cCCC
Q 022337 93 MGIIGPSGSGKSTLLRALN---RLWE 115 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~---gl~~ 115 (298)
+||+|+-|+|||||+..|. |...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 8999999999999999994 6543
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.93 E-value=0.23 Score=37.82 Aligned_cols=24 Identities=50% Similarity=0.689 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCccHHH-HHHHHhcC
Q 022337 90 GVIMGIIGPSGSGKST-LLRALNRL 113 (298)
Q Consensus 90 Ge~~~iiG~nGsGKST-Llk~l~gl 113 (298)
|.+..|+||=.||||| |++.+-..
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~ 26 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRL 26 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHH
Confidence 6778899999999999 88887654
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=85.92 E-value=0.13 Score=42.02 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=28.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
+++--++.|.||.++|||++...|+.++ .|.+
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l---~G~v 81 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFI---QGAV 81 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH---TCEE
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHh---CCEE
Confidence 5788899999999999999999999987 3554
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.82 E-value=0.16 Score=42.31 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=17.2
Q ss_pred EEEEcCCCccHHHHHHHH
Q 022337 93 MGIIGPSGSGKSTLLRAL 110 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l 110 (298)
++|+|.-++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHH
Confidence 799999999999999988
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.76 E-value=0.28 Score=41.33 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.+-.++++|-.-+|||||++.|.|--..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~ 138 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIA 138 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CceEEEEEecCccchhhhhhhhhccceE
Confidence 3445899999999999999999996543
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.24 E-value=0.31 Score=36.39 Aligned_cols=41 Identities=12% Similarity=0.098 Sum_probs=28.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHH-hcCCCCCcc-EEE-ECCEeC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRAL-NRLWEPPSG-TVF-LDGRDI 128 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l-~gl~~p~~G-~I~-i~g~~i 128 (298)
++|=.+.+.|-+||||||+.+.| ..|.+-..| .|. ++|.++
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni 47 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK 47 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCH
Confidence 45667889999999999999998 455543333 455 355444
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.16 E-value=0.22 Score=44.46 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHH-HHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK-LKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~-l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
++.=-.||.+.=..+-++||+ ......++..++. +-..++ |-+.-.-+..+..+|+|
T Consensus 165 ~~e~d~al~rrF~~v~v~ep~----~~~~~~il~~~~~~~e~~h~--v~~~~~ai~~~v~ls~r 222 (387)
T d1qvra2 165 EIEKDPALERRFQPVYVDEPT----VEETISILRGLKEKYEVHHG--VRISDSAIIAAATLSHR 222 (387)
T ss_dssp HHTTCTTTCSCCCCEEECCCC----HHHHHHHHHHHHHHHHHHTT--CEECHHHHHHHHHHHHH
T ss_pred HhcccHHHHHhcccccCCCCc----HHHHHHHHHHHHHHHHhccC--CcccHHHHHHHHHhccc
Confidence 344445777777888888886 3444444444433 322223 33444445555666666
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=84.05 E-value=0.28 Score=47.07 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.+.+.|.|+||||||+-.|.|+..+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999988886543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=84.00 E-value=0.31 Score=40.56 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPP 117 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~ 117 (298)
.+.-+.|.||.|+||+++.+.|...-...
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~ 50 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKLSDRS 50 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTT
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCc
Confidence 45568899999999999999998755443
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.75 E-value=0.28 Score=47.30 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.+.+.|-|+||||||+-.|.|+..+
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987755
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=82.44 E-value=0.34 Score=46.66 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.+.+.|-|+||||||+-.|.|+..+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988887654
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.39 E-value=0.12 Score=42.28 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=18.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHH
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRAL 110 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l 110 (298)
-.|+-+.+++|.|+|||+..-+.
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~ 78 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAM 78 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHH
Confidence 36888889999999999865443
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.27 E-value=0.43 Score=35.90 Aligned_cols=23 Identities=48% Similarity=0.481 Sum_probs=18.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHh
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
+|.+..|+||=.|||||-|=-..
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~ 23 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRV 23 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEEEecccCHHHHHHHHHH
Confidence 58899999999999999554433
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=80.92 E-value=0.4 Score=46.80 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.+.+.|-|+||||||+-.|.|+..+
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL 147 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYF 147 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999888777655
|