Citrus Sinensis ID: 022355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSVRALKDETNGGTSSSAGRSWEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTTKENPAIVPASKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK
Secondary Structure (PSIPRED)
cEEEEcccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccccccccccccccEEEEcccccccEEEEEEEEEcccccccccccccccccccccccccHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccHcccHHHHHHHHHHcccccEEcccHHHHHHcccccccHHHHcc
Coil and Loop (DISEMBL)
mirlnaycstlpsaaqvKLGSSYGSFIIKNykarksswgVSVRALkdetnggtsssagrswepgleievpseqrpvneysslkdgvlyswgelgqgpfilRLGGLWLVAFMVLGvptaaasfdpsrepLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAvipyeesgwydgqmwvkppevkpVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQstmttkenpaivpasktkknfNIRKEELLqlpaevmsDDDLAAAAAEaadgrpvycrDRYYralaggqyckwedlvk
Flexible Loop (DISEMBL)
MIRLNAYCstlpsaaqvklGSSYGSFIIKNykarksswgVSVRAlkdetnggtsssagrswepgleievpseqrpvneYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTmttkenpaivpasktkknfnIRKEELLQLPAEVMSDDDLAAAAaeaadgrpvyCRDRYYRAlaggqyckwedlvk
Low Complexity Region (SEG)
MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSVRALKDETNGGTSSSAGRSWEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVKPVIKMLKQtlvgtgallvtatllFIFATPVEQFFQSTMTTKENPAIVPASKTKKNFNIRKEELLQLPAEVMSdddlaaaaaeaadGRPVYCRDRYYRALAGGQYCKWEDLVK
Disordered region (IsUnstruct)
****NAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSV**************************************SLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTM****************************************AAAEAADGRPVYCRDRYYRALAGGQYCKWEDL**
Disordered Region (DISOPRED)
MIR****CST*******************************************************EIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFF*************************KEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK
Disordered Region (DISEMBL)
MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSVRALK**************WEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTTKENPAIVPASKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK
Disordered Region (DISPRO)
MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSVRALKD*****************LEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTM****************NFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSVRALKDETNGGTSSSAGRSWEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTTKENPAIVPASKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
P51273	165	Uncharacterized protein y	N/A	no	0.489	0.884	0.358	3e-22
Q1XDL3	165	Uncharacterized protein y	N/A	no	0.489	0.884	0.345	4e-21
P48276	159	Uncharacterized protein y	N/A	no	0.466	0.874	0.379	1e-16
O78501	155	Uncharacterized protein y	yes	no	0.456	0.877	0.333	8e-14

>sp|P51273|YCF36_PORPU Uncharacterized protein ycf36 OS=Porphyra purpurea GN=ycf36 PE=3 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 13/159 (8%)

Query: 66  EIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPS 125
           +  VP EQ+PVNEY+SLK+   + W  L    +  ++  + L+A   L  P   + F  +
Sbjct: 7   QCPVPLEQQPVNEYNSLKNSWFFCWPTLSSHSYNKKIT-ITLIATCFLVSPVLLSIFPIA 65

Query: 126 REPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPP-- 183
           + PL+F  +    +  +   I++R+YLGWSYV  RL+SA + YEESGWYDGQ+WVKP   
Sbjct: 66  KLPLKFFFSEFIISSLITCFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIWVKPSEI 125

Query: 184 ----------EVKPVIKMLKQTLVGTGALLVTATLLFIF 212
                     EV P++  +K TL     +     +LF +
Sbjct: 126 LVKDRFIGLYEVFPLLNKIKNTLSCLSLMTTAPAILFFY 164

Porphyra purpurea (taxid: 2787)

>sp|Q1XDL3|YCF36_PORYE Uncharacterized protein ycf36 OS=Porphyra yezoensis GN=ycf36 PE=3 SV=1

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 13/159 (8%)

Query: 66  EIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPS 125
           +  VP EQ+PV+EY+SLK+   + W  L +  +  ++    L+  +++  P   + F  +
Sbjct: 7   QCPVPKEQQPVHEYTSLKNSWFFCWPTLSRRSYNKKITIALLLNCLLVS-PILLSIFPIT 65

Query: 126 REPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPP-- 183
           + PL+F  +    +  +   I++R+YLGWSYV  RL+SA + YEESGWYDGQ+WVKP   
Sbjct: 66  KLPLKFFFSEFITSSLMTGFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIWVKPSEI 125

Query: 184 ----------EVKPVIKMLKQTLVGTGALLVTATLLFIF 212
                     EV P++  +K TL     ++    LLF +
Sbjct: 126 LLKDRFIGLYEVFPLLNKIKNTLSFLSLMISGPVLLFFY 164

Porphyra yezoensis (taxid: 2788)

>sp|P48276|YCF36_CYAPA Uncharacterized protein ycf36 OS=Cyanophora paradoxa GN=ycf36 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 14/153 (9%)

Query: 69  VPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREP 128
           +P+EQ+P+NEY  L + VL++W       +   L  ++ + F++  + T          P
Sbjct: 7   IPTEQQPLNEYQILNNSVLFNWPSQKLKIYFFYLFTIYSIGFLLTFLITFYNDLFIV-HP 65

Query: 129 LRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPE---- 184
           +   +    G  F++ L +LR+YLGWSY+  RLLSA + YEESGWYDGQ+WVK  E    
Sbjct: 66  VNIFVHGIIGGNFVLILDLLRLYLGWSYICQRLLSATVSYEESGWYDGQIWVKSSEVLIQ 125

Query: 185 --------VKPVIKMLKQTLVGTGALLVTATLL 209
                   V+PV+  LKQTL G   L++  TLL
Sbjct: 126 DRLIGIYQVRPVLNRLKQTL-GVVILILGFTLL 157

Cyanophora paradoxa (taxid: 2762)

>sp|O78501|YCF36_GUITH Uncharacterized protein ycf36 OS=Guillardia theta GN=ycf36 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 23/159 (14%)

Query: 69  VPSEQRPVNEYSSLKDGVLYSWG-ELGQ--GPFILRLGGLWLVAFMVLGVPTAAASFDPS 125
           VP  Q P+NEY+ L     +SW  ++G+    F+L++  L L  F  + +    + ++  
Sbjct: 5   VPENQLPINEYNKLTSAWDFSWACKIGKLYYKFLLKMQ-LCLFLFFCICLNFLDSKYETG 63

Query: 126 REPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPE- 184
              L         TLF + LI LR YLG+ Y+  RLL + +PYEES WYDGQ+WVK    
Sbjct: 64  LYSL------ILSTLF-ICLICLRTYLGFRYIYVRLLKSALPYEESSWYDGQVWVKNINY 116

Query: 185 -----------VKPVIKMLKQTLVGTGALLVTATLLFIF 212
                      V P++  LK +     + L+   L FIF
Sbjct: 117 LIKDRLVADYTVLPILSRLKISFTINFSFLICLLLRFIF 155

Guillardia theta (taxid: 55529)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
224074229	311	predicted protein [Populus trichocarpa]	1.0	0.958	0.761	1e-123
225438936	309	PREDICTED: uncharacterized protein ycf36	0.993	0.957	0.749	1e-119
357453667	312	hypothetical protein MTR_2g089840 [Medic	1.0	0.955	0.737	1e-117
356496955	311	PREDICTED: uncharacterized protein ycf36	0.996	0.954	0.733	1e-113
356541681	311	PREDICTED: uncharacterized protein ycf36	0.996	0.954	0.730	1e-112
15240715	327	uncharacterized protein [Arabidopsis tha	0.959	0.874	0.701	1e-107
297794245	326	hypothetical protein ARALYDRAFT_496863 [	0.942	0.861	0.712	1e-107
449463963	312	PREDICTED: uncharacterized protein ycf36	0.996	0.951	0.661	1e-103
217073882	258	unknown [Medicago truncatula]	0.768	0.887	0.740	4e-93
449527867	237	PREDICTED: uncharacterized protein ycf36	0.748	0.940	0.738	7e-88

>gi|224074229|ref|XP_002304310.1| predicted protein [Populus trichocarpa] gi|222841742|gb|EEE79289.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/310 (76%), Positives = 262/310 (84%), Gaps = 12/310 (3%)

Query: 1   MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSVRALKDETNGGTSSSAGRS 60
           M++LN  CS +PS  Q  LG+S+ S+II+ ++A+K    VSV+ALKD+TN GTSS  GRS
Sbjct: 1   MLKLNVCCSLIPSPRQATLGASHRSWIIRYHRAQKLLPVVSVKALKDDTNEGTSSFRGRS 60

Query: 61  WEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAA 120
           WEPGLEIEVP EQRPVNEYSSLK+G LYSWGELG GPF+LRLGGLWLV F VLGVP AAA
Sbjct: 61  WEPGLEIEVPFEQRPVNEYSSLKEGPLYSWGELGPGPFLLRLGGLWLVTFTVLGVPIAAA 120

Query: 121 SFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWV 180
           +F+PSREPLRFVLAAGTGTLFLVSLI+LRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWV
Sbjct: 121 TFNPSREPLRFVLAAGTGTLFLVSLIILRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWV 180

Query: 181 KPPE------------VKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTTKE 228
           KP E            VKPVIKMLKQTLVGTGALLVTA +LFIFATPVE FFQ+T  TKE
Sbjct: 181 KPTEVLARDRLLGSYKVKPVIKMLKQTLVGTGALLVTAVMLFIFATPVEDFFQTTFATKE 240

Query: 229 NPAIVPASKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAGG 288
           NP+I PAS     +N+RKEELL+LP EV++DDDLAAAAAEAA GRPVYCRDRYYRALAGG
Sbjct: 241 NPSIDPASGKNTKYNVRKEELLRLPVEVIADDDLAAAAAEAAGGRPVYCRDRYYRALAGG 300

Query: 289 QYCKWEDLVK 298
           QYCKWEDL+ 
Sbjct: 301 QYCKWEDLLN 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438936|ref|XP_002284127.1| PREDICTED: uncharacterized protein ycf36 [Vitis vinifera] gi|147834799|emb|CAN75014.1| hypothetical protein VITISV_039949 [Vitis vinifera] gi|296087349|emb|CBI33723.3| unnamed protein product [Vitis vinifera]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/311 (74%), Positives = 257/311 (82%), Gaps = 15/311 (4%)

Query: 1   MIRLNAYCSTLPSAAQVKLGSS-YGSFIIKNYKARKSSWGVSVRALKDETNGGTSSSAGR 59
           M+RLN YCS +PS  QV +GSS + S+ I+ +K RK   G+S+RALKDET+GGTS   G 
Sbjct: 1   MLRLNVYCSPIPSVRQVTIGSSTFSSWTIQYHKGRK--LGISIRALKDETDGGTSGIPGG 58

Query: 60  SWEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAA 119
           SW+PGLEIEVP EQRPVNEYSSLKDG LYSWGEL  G F +RLGGLWLVAF VLGVP AA
Sbjct: 59  SWDPGLEIEVPFEQRPVNEYSSLKDGPLYSWGELSPGSFFIRLGGLWLVAFTVLGVPIAA 118

Query: 120 ASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMW 179
           ASF+PSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMW
Sbjct: 119 ASFNPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMW 178

Query: 180 VKPPE------------VKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTTK 227
           VKPPE            VKPVIK+LKQTLVGTG LLVTA  LFIFATPVE F +++  TK
Sbjct: 179 VKPPEVLARDRLLGSYKVKPVIKLLKQTLVGTGVLLVTAVTLFIFATPVEDFLRTSFATK 238

Query: 228 ENPAIVPASKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAG 287
           E  + VP S     FNIRKE+LL+LP EVM+DDDLAAAAAEAADGRPVYCRDR+YRALAG
Sbjct: 239 ETLSNVPTSNISTKFNIRKEDLLRLPVEVMADDDLAAAAAEAADGRPVYCRDRFYRALAG 298

Query: 288 GQYCKWEDLVK 298
           GQYCKW+DL+K
Sbjct: 299 GQYCKWDDLLK 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453667|ref|XP_003597114.1| hypothetical protein MTR_2g089840 [Medicago truncatula] gi|357482685|ref|XP_003611629.1| hypothetical protein MTR_5g016100 [Medicago truncatula] gi|355486162|gb|AES67365.1| hypothetical protein MTR_2g089840 [Medicago truncatula] gi|355512964|gb|AES94587.1| hypothetical protein MTR_5g016100 [Medicago truncatula] gi|388506430|gb|AFK41281.1| unknown [Medicago truncatula]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/312 (73%), Positives = 257/312 (82%), Gaps = 14/312 (4%)

Query: 1   MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVS--VRALKDETNGGTSSSAG 58
           MIRLN +CS +P+A Q K GS++GSFII+N +A K S  VS  V+A+K E NG TS S+G
Sbjct: 1   MIRLNFHCSLIPTARQTKPGSNHGSFIIQNPRASKFSQQVSIKVKAVKGEMNGETSGSSG 60

Query: 59  RSWEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTA 118
            SW+PGLEIEVP EQRPVNEYSSLKDG+LYSWGELG G F LRLGGLWL  F VLG P A
Sbjct: 61  GSWDPGLEIEVPFEQRPVNEYSSLKDGMLYSWGELGPGSFFLRLGGLWLAVFTVLGAPIA 120

Query: 119 AASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM 178
           AASF PSREPLRF+LAAGTGTLF+VSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM
Sbjct: 121 AASFSPSREPLRFILAAGTGTLFIVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM 180

Query: 179 WVKPPE------------VKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTT 226
           WVKPPE            VKPV+K+LKQTLVGTGALLVT  +LFIFATPVE F  ST TT
Sbjct: 181 WVKPPEILARDRLLGSYKVKPVVKLLKQTLVGTGALLVTGVMLFIFATPVENFLHSTFTT 240

Query: 227 KENPAIVPASKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALA 286
           +EN + V   K    +N+RKEELL+LPA+V +DD+LAAAAAEAADGRPVYCRDR+YRALA
Sbjct: 241 EENKSTVQVPKVNTKYNLRKEELLKLPADVKADDNLAAAAAEAADGRPVYCRDRFYRALA 300

Query: 287 GGQYCKWEDLVK 298
           GGQYCKWEDL+K
Sbjct: 301 GGQYCKWEDLLK 312

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496955|ref|XP_003517330.1| PREDICTED: uncharacterized protein ycf36-like [Glycine max]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/312 (73%), Positives = 257/312 (82%), Gaps = 15/312 (4%)

Query: 1   MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSVRA--LKDETNGGTSSSAG 58
           MIRLN YCS +PSA Q + GSSYGS II N+KA K S  +S++A  +KDE +G TS S+G
Sbjct: 1   MIRLNVYCSLIPSARQARPGSSYGSLIIHNHKASKFSHRISIKAKAIKDEMDGETSGSSG 60

Query: 59  RSWEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTA 118
           RSW+PGLEIEVP EQRPVNEYSSLKDG+LYSWGELG G F LRLGGLWL  F VLG P A
Sbjct: 61  RSWDPGLEIEVPFEQRPVNEYSSLKDGILYSWGELGPGSFFLRLGGLWLAVFTVLGGPIA 120

Query: 119 AASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM 178
           AASF+PS+EPLRF+LA GTGTLF+VSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM
Sbjct: 121 AASFNPSKEPLRFILAGGTGTLFIVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM 180

Query: 179 WVKPPE------------VKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTT 226
           WVKPPE            VKPV+K+LKQTLVGTGALLVT  +LFIFATP+E FF++T T 
Sbjct: 181 WVKPPEILARDRLLGSYKVKPVVKLLKQTLVGTGALLVTGVMLFIFATPLENFFRTTFTK 240

Query: 227 KENPAIVPASKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALA 286
           +E  + V A K      +RKEELL+LP EV++DDDLAAAAAEAADGRPVYCRDRYYRALA
Sbjct: 241 EEIKSTVQAPKV-NTKLLRKEELLKLPVEVITDDDLAAAAAEAADGRPVYCRDRYYRALA 299

Query: 287 GGQYCKWEDLVK 298
           GGQYCKWEDL+K
Sbjct: 300 GGQYCKWEDLLK 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541681|ref|XP_003539302.1| PREDICTED: uncharacterized protein ycf36-like [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/312 (73%), Positives = 256/312 (82%), Gaps = 15/312 (4%)

Query: 1   MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSVRA--LKDETNGGTSSSAG 58
           MIR N YCS +PSA Q + G+SYGS II N+KA K S  +S++A  +KDE +G TS S+G
Sbjct: 1   MIRQNVYCSLIPSARQARPGNSYGSLIIHNHKASKFSHRISIKAKAIKDEMDGETSGSSG 60

Query: 59  RSWEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTA 118
           RSW+PGLEIEVP EQRPVNEYSSLKDG+LYSWGELG G F LRLG LWL  F VLG P A
Sbjct: 61  RSWDPGLEIEVPFEQRPVNEYSSLKDGILYSWGELGPGSFFLRLGSLWLAVFTVLGGPIA 120

Query: 119 AASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM 178
           AASF+PS+EPLRF+LAAGTGTLF+VSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM
Sbjct: 121 AASFNPSKEPLRFILAAGTGTLFIVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM 180

Query: 179 WVKPPE------------VKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTT 226
           WVKPPE            VKPV+K+LKQTLVGTGALLVT  +LFIFATPVE FF++T T 
Sbjct: 181 WVKPPEILARDRLLGSYKVKPVVKLLKQTLVGTGALLVTGVMLFIFATPVENFFRTTFTK 240

Query: 227 KENPAIVPASKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALA 286
           +E  + V A K      +RKEELL+LP EV++DDDLAAAAAEAADGRPVYCRDRYYRALA
Sbjct: 241 EEIKSTVQAPKV-NTKLLRKEELLKLPVEVITDDDLAAAAAEAADGRPVYCRDRYYRALA 299

Query: 287 GGQYCKWEDLVK 298
           GGQYCKWEDL+K
Sbjct: 300 GGQYCKWEDLLK 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240715|ref|NP_201538.1| uncharacterized protein [Arabidopsis thaliana] gi|13430430|gb|AAK25837.1|AF360127_1 unknown protein [Arabidopsis thaliana] gi|9758436|dbj|BAB09022.1| unnamed protein product [Arabidopsis thaliana] gi|15293189|gb|AAK93705.1| unknown protein [Arabidopsis thaliana] gi|332010950|gb|AED98333.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/308 (70%), Positives = 247/308 (80%), Gaps = 22/308 (7%)

Query: 13  SAAQVKLGSSYGSFIIKNY--------KARKSSWGVSVRALKDETN--GGTSSSAGRSWE 62
           S +  KLGS Y S  I  Y        K ++    VSV+A++D+ N  GG+ S +G+SW+
Sbjct: 20  SNSSSKLGSYYDSSSIIKYGGISDVVGKKQELFLSVSVKAVEDKGNNGGGSMSFSGQSWD 79

Query: 63  PGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASF 122
           P  EIEVPS+QRPVNEYSSLK+G+LYSWGELG   F +RLGGLWLV F VLGVP AAASF
Sbjct: 80  PSSEIEVPSDQRPVNEYSSLKEGMLYSWGELGPSEFFIRLGGLWLVTFTVLGVPVAAASF 139

Query: 123 DPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKP 182
           +PSREPLRF+LAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKP
Sbjct: 140 NPSREPLRFILAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKP 199

Query: 183 PE------------VKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTTKENP 230
           PE            VKPVIKMLKQTL+GTGALLV+A +LF+FATPVE FF++T+ + EN 
Sbjct: 200 PEVLARDRLLGSYKVKPVIKMLKQTLIGTGALLVSAFVLFVFATPVEDFFKTTLGSTENQ 259

Query: 231 AIVPASKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAGGQY 290
             V  S+T   FNIRKE+LL+LP +V++DDDLAAAAAEAADGRPVYCRDRYYRALAGGQY
Sbjct: 260 PEVSISRTSNKFNIRKEQLLRLPVDVVTDDDLAAAAAEAADGRPVYCRDRYYRALAGGQY 319

Query: 291 CKWEDLVK 298
           CKWEDLVK
Sbjct: 320 CKWEDLVK 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794245|ref|XP_002865007.1| hypothetical protein ARALYDRAFT_496863 [Arabidopsis lyrata subsp. lyrata] gi|297310842|gb|EFH41266.1| hypothetical protein ARALYDRAFT_496863 [Arabidopsis lyrata subsp. lyrata]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/303 (71%), Positives = 245/303 (80%), Gaps = 22/303 (7%)

Query: 18  KLGSSYGSFIIKNY--------KARKSSWGVSVRALKDETN--GGTSSSAGRSWEPGLEI 67
           KLGS Y S  I  Y        K ++    VSV+A++D+ N  GG+ S +G+SW+P  EI
Sbjct: 24  KLGSYYDSSSIIKYGGIVDDVGKKQELLLSVSVKAVEDKGNNGGGSMSFSGQSWDPSSEI 83

Query: 68  EVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSRE 127
           EVPS+QRPVNEYSSLK+G+LYSWGELG   F +RLGGLWLV F VLGVP AAASF+PSRE
Sbjct: 84  EVPSDQRPVNEYSSLKEGMLYSWGELGPSEFFIRLGGLWLVTFTVLGVPIAAASFNPSRE 143

Query: 128 PLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPE--- 184
           PLRF LAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPE   
Sbjct: 144 PLRFALAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVLA 203

Query: 185 ---------VKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTTKENPAIVPA 235
                    VKPVIKMLKQTL+GTGALLV+A +LF+FATPVE FF++T+ +KEN   V  
Sbjct: 204 RDRLLGSYKVKPVIKMLKQTLIGTGALLVSAFVLFVFATPVEDFFKTTLRSKENQPEVSI 263

Query: 236 SKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWED 295
           S+T   FNIRKE+LL+LP +V++DDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWED
Sbjct: 264 SRTSNKFNIRKEQLLRLPVDVVTDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWED 323

Query: 296 LVK 298
           LVK
Sbjct: 324 LVK 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463963|ref|XP_004149699.1| PREDICTED: uncharacterized protein ycf36-like [Cucumis sativus]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/313 (66%), Positives = 243/313 (77%), Gaps = 16/313 (5%)

Query: 1   MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVSVRALKD-ETNGGTSSSAGR 59
           M+RLN YC++  S  +     +  SF  +    R+ +  V  +ALKD +T+GG    +G+
Sbjct: 1   MLRLNLYCTSCCSLIRDNKNVT-TSFRFQLRPNRRLNPRVLAKALKDDQTDGGGGRFSGQ 59

Query: 60  SWEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAA 119
            W+PGLEIEVP EQRPVNEYSSLKD  LYSWGELG  PF LRLGGLWL +F+VLG+P AA
Sbjct: 60  KWDPGLEIEVPFEQRPVNEYSSLKDSTLYSWGELGAAPFFLRLGGLWLGSFIVLGIPVAA 119

Query: 120 ASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMW 179
           ASF+PSREPLRFVLAAG GTL LVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMW
Sbjct: 120 ASFNPSREPLRFVLAAGIGTLLLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMW 179

Query: 180 VKPPE------------VKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTTK 227
           VKPPE            VKPVI MLKQTLVGTG +LV+  L FIFATPVE F Q+T ++ 
Sbjct: 180 VKPPEVLARDRLLGSYKVKPVINMLKQTLVGTGIVLVSGVLFFIFATPVEDFLQTTFSSN 239

Query: 228 EN--PAIVPASKTKKNFNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRAL 285
           ++   +I P S   K +N+RK++LL+LP EV++DD+LAAAAAEAADGRPVYCRDR+YRAL
Sbjct: 240 QSLPSSINPDSNINKKYNLRKDQLLRLPVEVLADDELAAAAAEAADGRPVYCRDRFYRAL 299

Query: 286 AGGQYCKWEDLVK 298
           AGGQYCKWEDL+K
Sbjct: 300 AGGQYCKWEDLIK 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073882|gb|ACJ85301.1| unknown [Medicago truncatula]

 Score =  347 bits (889), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 180/243 (74%), Positives = 198/243 (81%), Gaps = 14/243 (5%)

Query: 1   MIRLNAYCSTLPSAAQVKLGSSYGSFIIKNYKARKSSWGVS--VRALKDETNGGTSSSAG 58
           MIRLN +CS +P+A Q K GS++GSFII+N +A K S  VS  V+A+K E NG TS S+G
Sbjct: 1   MIRLNFHCSLIPTARQTKPGSNHGSFIIQNPRASKFSQQVSIKVKAVKGEMNGETSGSSG 60

Query: 59  RSWEPGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTA 118
            SW+PGLEIEVP EQRPVNEYSSLKDG+LYSWGELG G F LRLGGLWL  F VLG P A
Sbjct: 61  GSWDPGLEIEVPFEQRPVNEYSSLKDGMLYSWGELGPGSFFLRLGGLWLAVFTVLGAPIA 120

Query: 119 AASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM 178
           AASF PSREPLRF+LAAGTGTLF+VSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM
Sbjct: 121 AASFSPSREPLRFILAAGTGTLFIVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQM 180

Query: 179 WVKPPE------------VKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTT 226
           WVKPPE            VKPV+K+LKQTLVGTGALLVT  +LFIFATPVE FF ST TT
Sbjct: 181 WVKPPEILARDRLLGSYKVKPVVKLLKQTLVGTGALLVTGVMLFIFATPVENFFHSTFTT 240

Query: 227 KEN 229
           +E 
Sbjct: 241 EEK 243

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527867|ref|XP_004170930.1| PREDICTED: uncharacterized protein ycf36-like, partial [Cucumis sativus]

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 175/237 (73%), Positives = 197/237 (83%), Gaps = 14/237 (5%)

Query: 76  VNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAA 135
           VNEYSSLKD  LYSWGELG  PF LRLGGLWL +F+VLG+P AAASF+PSREPLRFVLAA
Sbjct: 1   VNEYSSLKDSTLYSWGELGAAPFFLRLGGLWLGSFIVLGIPVAAASFNPSREPLRFVLAA 60

Query: 136 GTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPE----------- 184
           G GTL LVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPE           
Sbjct: 61  GIGTLLLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVLARDRLLGSY 120

Query: 185 -VKPVIKMLKQTLVGTGALLVTATLLFIFATPVEQFFQSTMTTKEN--PAIVPASKTKKN 241
            VKPVI MLKQTLVGTG +LV+  L FIFATPVE F Q+T ++ ++   +I P S   K 
Sbjct: 121 KVKPVINMLKQTLVGTGIVLVSGVLFFIFATPVEDFLQTTFSSNQSLPSSINPDSNINKK 180

Query: 242 FNIRKEELLQLPAEVMSDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK 298
           +N+RK++LL+LP EV++DD+LAAAAAEAADGRPVYCRDR+YRALAGGQYCKWEDL+K
Sbjct: 181 YNLRKDQLLRLPVEVLADDELAAAAAEAADGRPVYCRDRFYRALAGGQYCKWEDLIK 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TAIR|locus:2158197	327	CGLD27 "AT5G67370" [Arabidopsi	0.959	0.874	0.623	1.4e-94
TAIR|locus:2142999	265	AT5G11840 "AT5G11840" [Arabido	0.406	0.456	0.492	3.2e-26

TAIR|locus:2158197 CGLD27 "AT5G67370" [Arabidopsis thaliana (taxid:3702)]

 Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
 Identities = 192/308 (62%), Positives = 220/308 (71%)

Query:    13 SAAQVKLGSSYGSFIIKNY--------KARKSSWGVSVRALKDETN--GGTSSSAGRSWE 62
             S +  KLGS Y S  I  Y        K ++    VSV+A++D+ N  GG+ S +G+SW+
Sbjct:    20 SNSSSKLGSYYDSSSIIKYGGISDVVGKKQELFLSVSVKAVEDKGNNGGGSMSFSGQSWD 79

Query:    63 PGLEIEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASF 122
             P  EIEVPS+QRPVNEYSSLK+G+LYSWGELG   F +RLGGLWLV F VLGVP AAASF
Sbjct:    80 PSSEIEVPSDQRPVNEYSSLKEGMLYSWGELGPSEFFIRLGGLWLVTFTVLGVPVAAASF 139

Query:   123 DPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKP 182
             +PSREPLRF+LAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKP
Sbjct:   140 NPSREPLRFILAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKP 199

Query:   183 PEV------------KPVIKMLKQXXXXXXXXXXXXXXXFIFATPVEQFFQSTMTTKENP 230
             PEV            KPVIKMLKQ               F+FATPVE FF++T+ + EN 
Sbjct:   200 PEVLARDRLLGSYKVKPVIKMLKQTLIGTGALLVSAFVLFVFATPVEDFFKTTLGSTENQ 259

Query:   231 AIVPASKTKKNFNIRKEELLQLPAEVMSXXXXXXXXXXXXXGRPVYCRDRYYRALAGGQY 290
               V  S+T   FNIRKE+LL+LP +V++             GRPVYCRDRYYRALAGGQY
Sbjct:   260 PEVSISRTSNKFNIRKEQLLRLPVDVVTDDDLAAAAAEAADGRPVYCRDRYYRALAGGQY 319

Query:   291 CKWEDLVK 298
             CKWEDLVK
Sbjct:   320 CKWEDLVK 327

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2142999 AT5G11840 "AT5G11840" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 62/126 (49%), Positives = 84/126 (66%)

Query:    63 PGLEIEVPSEQRPVNEYSSLKDGVLYSW--GELGQGPFILRLGGLWLVAFMVLGVPTA-A 119
             P  +  VP EQ+P+NEY SL     +SW  G+L +    L L G    AF V G+P +  
Sbjct:    57 PETDCPVPPEQQPINEYQSLSTSFPFSWASGDLIEYSTRLFLTGASF-AFFV-GLPVSWF 114

Query:   120 ASFDPSREPLRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMW 179
              S  P  EP++ +LAA +  +F+V+L V+R+YLGW+YVG+RLLSA + YEE+GWYDGQ+W
Sbjct:   115 GSIGPEYEPVKRILAASSSGIFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVW 174

Query:   180 VKPPEV 185
             VK PEV
Sbjct:   175 VKTPEV 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      298       270   0.00097  114 3  11 22  0.49    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  212 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.73u 0.15s 21.88t   Elapsed:  00:00:01
  Total cpu time:  21.73u 0.15s 21.88t   Elapsed:  00:00:01
  Start:  Thu May  9 18:06:15 2013   End:  Thu May  9 18:06:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0089000701	hypothetical protein (311 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.70.142.1	hypothetical protein (191 aa)			•	•					0.560
	gw1.XIII.355.1	hypothetical protein (158 aa)			•	•					0.545
	eugene3.00150423	SubName- Full=Putative uncharacterized protein; (206 aa)			•	•					0.543
	gw1.V.3086.1	hypothetical protein (287 aa)			•	•					0.523
	eugene3.00090150	hypothetical protein (129 aa)			•	•					0.519
	gw1.IV.4064.1	hypothetical protein (225 aa)			•	•					0.516
	gw1.123.192.1	SubName- Full=Putative uncharacterized protein; (218 aa)			•	•					0.515
	estExt_Genewise1_v1.C_LG_II4195	SubName- Full=Putative uncharacterized protein; (140 aa)			•	•					0.515
	gw1.X.329.1	annotation not avaliable (189 aa)			•	•					0.514
	gw1.XVIII.1253.1	annotation not avaliable (470 aa)			•	•					0.513

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	298
pfam06799	145	pfam06799, DUF1230, Protein of unknown function (D	3e-61

>gnl|CDD|191610 pfam06799, DUF1230, Protein of unknown function (DUF1230)

 Score =  190 bits (485), Expect = 3e-61
 Identities = 71/144 (49%), Positives = 90/144 (62%), Gaps = 13/144 (9%)

Query: 69  VPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREP 128
           VP EQRP+NEY  LKD   +SW  L +  +  +L  +WL++F V G P A+ SF   + P
Sbjct: 3   VPPEQRPLNEYEELKDSWFFSWPTLEKKGYYRKLLKIWLISFPVFG-PIASGSFPLRKSP 61

Query: 129 LRFVLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPE---- 184
           LR +L+A  G L +  LI+LR+YLGWSYV  RLLS  + YEESGWYDGQ+WVKPPE    
Sbjct: 62  LRLILSAALGALLIPLLILLRLYLGWSYVRKRLLSETVEYEESGWYDGQVWVKPPEWLAR 121

Query: 185 --------VKPVIKMLKQTLVGTG 200
                   VKP++  LKQTL    
Sbjct: 122 DRLIASYQVKPILNRLKQTLAILA 145

This family consists of several hypothetical plant and photosynthetic bacterial proteins of around 160 residues in length. The function of this family is unknown although looking at the species distribution the protein may play a part in photosynthesis. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
PF06799	144	DUF1230: Protein of unknown function (DUF1230); In	100.0

>PF06799 DUF1230: Protein of unknown function (DUF1230); InterPro: IPR009631 This family represents Ycf36, which is found in plants, encoded in the genomes of algal chloroplasts and in cyanobacteria

Probab=100.00  E-value=1.2e-67  Score=450.90  Aligned_cols=132  Identities=55%  Similarity=1.046  Sum_probs=129.3

Q ss_pred             CCCCCCCCchhHHHhhhcCCCccccCCCchhHHHHHHHHHHHHHHHhhhhcccceeCCCCchHHHHHHHHHHHHHHHHHH
Q 022355           67 IEVPSEQRPVNEYSSLKDGVLYSWGELGQGPFILRLGGLWLVAFMVLGVPTAAASFDPSREPLRFVLAAGTGTLFLVSLI  146 (298)
Q Consensus        67 CPVP~EQrPvNEY~eLk~SwfFsW~tl~~~~y~~rL~~~w~~~~~iv~~PIAa~Sf~p~~~pl~fiL~a~~ga~~l~~Lv  146 (298)
                      ||||.||||+|||+|||+|||||||+++..+|.+||+++|++++++ ++|||++||+|+++|+||+++|++||+++++|+
T Consensus         1 CPVP~eQqP~nEy~~L~~S~~FsW~~~~~~~y~~~l~~~w~~~~~~-~~pia~~S~~~~~~~~~~~l~~~~ga~~~~~l~   79 (144)
T PF06799_consen    1 CPVPPEQQPLNEYQELKESWFFSWPTLELKSYLKRLLWIWLISFLV-FGPIAAGSFPPEKDPLEFILSGAVGALLLLLLV   79 (144)
T ss_pred             CccCccccCHHHHHHHhhCcCccCccCChHHHHHHHHHHHHHHHHH-HHhhheeecCccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999995 779999999999999999999999999999999


Q ss_pred             HHHHHhChHHHHhhhccCcccccccCccCCccccCCCC------------chHHHHHHHHHHHHH
Q 022355          147 VLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPE------------VKPVIKMLKQTLVGT  199 (298)
Q Consensus       147 lLRLYLGWsYV~dRLlSatVeYEESGWYDGQvWvKP~E------------VkPIL~RLk~Tl~~l  199 (298)
                      ++||||||+||+|||+|+|||||||||||||+|+||+|            |||||+|||+|+.++
T Consensus        80 llRlyLGW~YV~~RL~s~tV~YEESGWYDGQ~W~Kp~e~l~rDrLi~~yqVkPiL~RL~~tl~~l  144 (144)
T PF06799_consen   80 LLRLYLGWSYVGDRLLSATVEYEESGWYDGQVWVKPPEVLARDRLIGSYQVKPILSRLKQTLSIL  144 (144)
T ss_pred             HHHHHhChHHHHhhhccCcccccccCccCCccccCCHHHHHHHHHHhhhhhhHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999            999999999999763

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00