Citrus Sinensis ID: 022380

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFSDGSDHHQGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDEQLQMQQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVEGWSGNAGVRPPF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEEcccccHHHHHHHHHHHccccEEEEEcccEEEEEEEccccccccEEEEEEEEEEEEcEEEccccccccccccEEEEEEcccccEEcccccccEEEcccEEEEEEEEccHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEcccccccccccccccEEEEEEcccccEEEccEHHHHHccccEEEEEEEccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAGLDLGTASRyvhhqlhrpdlhlqhqpaddseehdnnnnnnnnnhrvggaqfsdgsdhhqGLDLVnaagnsgghgdivarrprgrppgsknkpkppviitRESANTLRAHILEvgngcdvfDCVANYARRRQRGIcilsgsgtvtnvsirqpaAAGAIVTLHGRFEIlslsgsflpppappgatsLTIFLaggqgqvvgGSVVGELTAAGPVIVIAASFTnvayerlpldedeQLQMQqasggsggagggnpnnlfadagagsagglpffnlplnmppnvqlpvegwsgnagvrppf
Flexible Loop (DISEMBL)
MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFSDGSDHHQGLDLVNAAGNSGGHGDIvarrprgrppgsknkpkppvIITRESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDEQLQMQQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQlpvegwsgnagvrppf
Low Complexity Region (SEG)
MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDnnnnnnnnnHRVGGAQFSDGSDHHQGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAggqgqvvggsvvgELTAAGPVIVIAASFTNVAYERLPLDEDEQLQMQQasggsggagggNPNNLFADAGAGSAGGlpffnlplnmppnVQLPVEGWSGNAGVRPPF
Disordered region (IsUnstruct)
**************************************************************************************************IITRESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSL***************LTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERL************************************AGGLPFFNLPLNM*********************
Disordered Region (DISOPRED)
******G*************************************************************************************************ANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAP**ATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFT*****************************************************************************
Disordered Region (DISEMBL)
MAGLDLGTASRYVHHQLHRPDLHLQH**********NNNNNNNNNHRVGGAQFSDGSDHHQGLDLVNAAGNSGGHGDIVARRPR**********KPPVIITRESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDEQL***********AGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVEGWSG********
Disordered Region (DISPRO)
****DLGTASRYVHHQLHRPDLH*********************************************************************KPKPPVIITRESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLP************************************GGLPFFNLPLNMPPNVQLPVEGWSGNAGVRPP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFSDGSDHHQGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDEQLQMQQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVEGWSGNAGVRPPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.862	0.826	0.428	1e-40

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 145/338 (42%), Positives = 186/338 (55%), Gaps = 81/338 (23%)

Query: 7   GTASRYVHHQLHRPDLHLQH------------------------QPADDSEEHDNNNNNN 42
           G ASRY H+ L RP++H Q                         QP+DDS E D++N ++
Sbjct: 9   GGASRYFHN-LFRPEIHHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESDHSNKDH 67

Query: 43  NNNHRVGGAQFSDGSDHHQGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITR 102
                           H QG    +   +S   G    +RPRGRPPGSKNK KPP+I+TR
Sbjct: 68  ----------------HQQGRPDSDPNTSSSAPG----KRPRGRPPGSKNKAKPPIIVTR 107

Query: 103 ESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAA------- 155
           +S N LR+H+LEV  G D+ + V+ YARRR RG+ +L G+GTV+NV++RQP         
Sbjct: 108 DSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGV 167

Query: 156 --AGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPV 213
              G +VTLHGRFEILSL+G+ LPPPAPPGA  L+IFLAGGQGQVVGGSVV  L A+ PV
Sbjct: 168 SGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPV 227

Query: 214 IVIAASFTNVAYERLPLDEDEQL-------------QMQQASGGSGGAGGGNPNNLFADA 260
           I++AASF+N  +ERLP++E+E+              QMQQA   S  +G      L    
Sbjct: 228 ILMAASFSNAVFERLPIEEEEEEGGGGGGGGGGGPPQMQQAPSASPPSGVTGQGQL---- 283

Query: 261 GAGSAGGLPFFNLPLNMPPNVQLPVEGWSGNAGVRPPF 298
             G+ GG  F   P  +         GW      RPPF
Sbjct: 284 -GGNVGGYGFSGDPHLL---------GWGAGTPSRPPF 311


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,259,552
Number of Sequences: 539616
Number of extensions: 6618610
Number of successful extensions: 88661
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 49508
Number of HSP's gapped (non-prelim): 28775
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
224138108	300	predicted protein [Populus trichocarpa]	0.979	0.973	0.781	1e-109
255557593	289	ESC, putative [Ricinus communis] gi|2235	0.939	0.968	0.778	1e-108
147861256	282	hypothetical protein VITISV_032602 [Viti	0.936	0.989	0.790	1e-108
225427274	282	PREDICTED: putative DNA-binding protein	0.936	0.989	0.790	1e-108
224126485	298	predicted protein [Populus trichocarpa]	0.969	0.969	0.775	1e-105
89257682	293	hypothetical protein 40.t00056 [Brassica	0.942	0.959	0.664	1e-94
15236657	292	putative AT-hook DNA-binding family prot	0.932	0.952	0.698	2e-91
297800302	294	hypothetical protein ARALYDRAFT_493093 [	0.939	0.952	0.695	1e-89
89274231	292	hypothetical protein 23.t00073 [Brassica	0.949	0.969	0.690	4e-88
356512004	276	PREDICTED: putative DNA-binding protein	0.912	0.985	0.702	9e-88

>gi|224138108|ref|XP_002326520.1| predicted protein [Populus trichocarpa] gi|222833842|gb|EEE72319.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/306 (78%), Positives = 251/306 (82%), Gaps = 14/306 (4%)

Query: 1   MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNN-----NNNNNNHRVGGAQFSD 55
           MAGLDLGT SRYVH   HRPDLHLQHQP  D E+HD+N         +  H        D
Sbjct: 1   MAGLDLGTTSRYVHQLHHRPDLHLQHQP--DPEDHDSNRAGGGLGGGSGGHFSTDHHHDD 58

Query: 56  GSDHHQGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEV 115
           GS  HQGLDLV AA NSG  GD+V RRPRGRP GSKNKPKPPVIITRESANTLRAHILEV
Sbjct: 59  GS--HQGLDLVAAAANSG-QGDLVGRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEV 115

Query: 116 GNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSF 175
           GNGCDVF+CVANYARRRQRGICILSG+GTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSF
Sbjct: 116 GNGCDVFECVANYARRRQRGICILSGAGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSF 175

Query: 176 LPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDEQ 235
           LPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDED+Q
Sbjct: 176 LPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDDQ 235

Query: 236 LQMQQ---ASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVEGWSGNA 292
           LQMQ      GG G  GGG  N+ F ++G  S GGLPFFNLPLNM  NVQLPV+GW GN+
Sbjct: 236 LQMQSGGGGGGGGGAGGGGVGNSPFNESGTPS-GGLPFFNLPLNMTANVQLPVDGWGGNS 294

Query: 293 GVRPPF 298
           G R PF
Sbjct: 295 GGRVPF 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557593|ref|XP_002519826.1| ESC, putative [Ricinus communis] gi|223540872|gb|EEF42430.1| ESC, putative [Ricinus communis]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 239/307 (77%), Positives = 255/307 (83%), Gaps = 27/307 (8%)

Query: 1   MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFSDGSDHH 60
           MAGLDLGT +RYVH   HRPDLHLQ Q   +SE+HD+N        R GG  FS  +DHH
Sbjct: 1   MAGLDLGT-TRYVHQLHHRPDLHLQRQ--LESEDHDSN--------RPGGGHFS--TDHH 47

Query: 61  Q--------GLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHI 112
           Q        GLDLV AA NSG   DIVARRPRGRPPGS+NKPKPPVIITRESANTLRAHI
Sbjct: 48  QQHEDGSQQGLDLVAAATNSG---DIVARRPRGRPPGSRNKPKPPVIITRESANTLRAHI 104

Query: 113 LEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLS 172
           LEVGNGCDVF+C++NYARRRQRGICILSG+GTVTNVSIRQPAAAGA+VTLHGRFEILSLS
Sbjct: 105 LEVGNGCDVFECISNYARRRQRGICILSGAGTVTNVSIRQPAAAGAVVTLHGRFEILSLS 164

Query: 173 GSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE 232
           GSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE
Sbjct: 165 GSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE 224

Query: 233 DEQLQMQQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVEGWSG-N 291
           DEQLQMQ  S G GG  G   NN F D GA ++GGLPFFNLPL MP NVQLPV+GW+G N
Sbjct: 225 DEQLQMQSGSSGGGGGSGVG-NNPFPD-GAATSGGLPFFNLPLTMPSNVQLPVDGWAGTN 282

Query: 292 AGVRPPF 298
           +G R PF
Sbjct: 283 SGSRAPF 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147861256|emb|CAN83987.1| hypothetical protein VITISV_032602 [Vitis vinifera]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 238/301 (79%), Positives = 251/301 (83%), Gaps = 22/301 (7%)

Query: 1   MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFS-DGSDH 59
           MAGLDLGTASRY+H QLHR DLHLQ +P D  E  DNN N        GGAQ+S D  D 
Sbjct: 1   MAGLDLGTASRYIH-QLHRSDLHLQ-RPQDSDE--DNNTNR-------GGAQYSGDHQDD 49

Query: 60  --HQGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGN 117
             H GL+LV+A   + G GD+VARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGN
Sbjct: 50  VAHHGLELVSA---NAGPGDLVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGN 106

Query: 118 GCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLP 177
           GCDVFDCVA YARRRQRGIC+LSGSGTVTNVSIRQPAAAGAI+TLHGRFEILSLSGSFLP
Sbjct: 107 GCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPAAAGAILTLHGRFEILSLSGSFLP 166

Query: 178 PPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDEQLQ 237
           PPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE+E LQ
Sbjct: 167 PPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEEPLQ 226

Query: 238 MQQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVEGWSGNAGVRPP 297
           MQQ    S G GGG  NN F D  A    GLPFFNLPLNM PN QLPV+GW+GN+G RPP
Sbjct: 227 MQQQVPQSSGGGGGGINNPFPDPSA----GLPFFNLPLNM-PNCQLPVDGWAGNSGARPP 281

Query: 298 F 298
           F
Sbjct: 282 F 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427274|ref|XP_002281411.1| PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 238/301 (79%), Positives = 251/301 (83%), Gaps = 22/301 (7%)

Query: 1   MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFS-DGSDH 59
           MAGLDLGTASRY+H QLHR DLHLQ +P D  E  DNN N        GGAQ+S D  D 
Sbjct: 1   MAGLDLGTASRYIH-QLHRSDLHLQ-RPQDSDE--DNNTNR-------GGAQYSGDHQDD 49

Query: 60  --HQGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGN 117
             H GL+LV+A   + G GDIVARRPRGRPPGSKN+PKPPVIITRESANTLRAHILEVGN
Sbjct: 50  VAHHGLELVSA---NAGPGDIVARRPRGRPPGSKNRPKPPVIITRESANTLRAHILEVGN 106

Query: 118 GCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLP 177
           GCDVFDCVA YARRRQRGIC+LSGSGTVTNVSIRQPAAAGAI+TLHGRFEILSLSGSFLP
Sbjct: 107 GCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPAAAGAILTLHGRFEILSLSGSFLP 166

Query: 178 PPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDEQLQ 237
           PPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE+E LQ
Sbjct: 167 PPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEEPLQ 226

Query: 238 MQQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVEGWSGNAGVRPP 297
           MQQ    S G GGG  NN F D  A    GLPFFNLPLNM PN QLPV+GW+GN+G RPP
Sbjct: 227 MQQQVPQSSGGGGGGINNPFPDPSA----GLPFFNLPLNM-PNCQLPVDGWAGNSGARPP 281

Query: 298 F 298
           F
Sbjct: 282 F 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126485|ref|XP_002329566.1| predicted protein [Populus trichocarpa] gi|222870275|gb|EEF07406.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/307 (77%), Positives = 252/307 (82%), Gaps = 18/307 (5%)

Query: 1   MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFSDGSDH- 59
           MAGLDLGT SRYVH   HRPDL LQHQP  D E+ D N   +     VG  +FS  +DH 
Sbjct: 1   MAGLDLGTTSRYVHQLHHRPDLQLQHQP--DPEDEDPNRAGDGLGS-VG--RFS--TDHN 53

Query: 60  -----HQGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILE 114
                HQGLDLV  A NSG  GDI+ARRPRGRPPGSKNK KPP+IITRESANTLRAHILE
Sbjct: 54  PDDGLHQGLDLVATAANSG-PGDIMARRPRGRPPGSKNKEKPPIIITRESANTLRAHILE 112

Query: 115 VGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGS 174
           VG+GCDVF+CV NYARRRQRGICILSG+GTVTNVSIRQPAAAG+IVTLHGRFEILSLSGS
Sbjct: 113 VGSGCDVFECVGNYARRRQRGICILSGAGTVTNVSIRQPAAAGSIVTLHGRFEILSLSGS 172

Query: 175 FLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDE 234
           FLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDED+
Sbjct: 173 FLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDD 232

Query: 235 QLQMQQASGGSGGAGGGNPNNL---FADAGAGSAGGLPFFNLPLNMPPNVQLPVEGWSGN 291
           QL MQ   GG GGAGGG        F +AGA S GGLPFFNLPLNMP NVQLPV GW+GN
Sbjct: 233 QLLMQSGGGGGGGAGGGIGVGNNGPFNEAGAAS-GGLPFFNLPLNMPSNVQLPVNGWAGN 291

Query: 292 AGVRPPF 298
           +G R PF
Sbjct: 292 SGGRAPF 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257682|gb|ABD65169.1| hypothetical protein 40.t00056 [Brassica oleracea]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 206/310 (66%), Positives = 227/310 (73%), Gaps = 29/310 (9%)

Query: 1   MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFS--DGSD 58
           MAGLDLGT+ RYV+HQL RPDLHL H           N+++ +    VG   F+  D  +
Sbjct: 1   MAGLDLGTSFRYVNHQLLRPDLHLHH-----------NSSSGDVTPGVGIGHFTADDEDN 49

Query: 59  HHQGLDLVNAAGNSGGHGDIVARRPRGRPPGS----------KNKPKPPVIITRESANTL 108
           +HQGLDL +  G SG  G        G               KNKPKPPVIITRESANTL
Sbjct: 50  NHQGLDLASGGGGSGSSGGGGHGGGGGGDGVGRRPRGRPPGSKNKPKPPVIITRESANTL 109

Query: 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEI 168
           RAHILEV NGCDVFDCVA YARRRQRGIC+LSGSGTVTNVSIRQP+AAGA+VTL G FEI
Sbjct: 110 RAHILEVTNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPSAAGAVVTLQGTFEI 169

Query: 169 LSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERL 228
           LSLSGSFLPPPAPPGATSLTIF+AGGQGQV+GGSVVGELTAAGPVIVIAASFTNVAYERL
Sbjct: 170 LSLSGSFLPPPAPPGATSLTIFVAGGQGQVIGGSVVGELTAAGPVIVIAASFTNVAYERL 229

Query: 229 PLDEDEQLQMQQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVEGW 288
           PL+EDEQ  +    G +GG       NLF +   G  GGLPFFNLP+NM PNVQLPVEGW
Sbjct: 230 PLEEDEQQHLGGGGGANGGG------NLFPEVAGGGGGGLPFFNLPMNMQPNVQLPVEGW 283

Query: 289 SGNAGVRPPF 298
            GN+G R PF
Sbjct: 284 PGNSGGRGPF 293

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236657|ref|NP_193515.1| putative AT-hook DNA-binding family protein [Arabidopsis thaliana] gi|17933299|gb|AAL48232.1|AF446359_1 AT4g17800/dl4935c [Arabidopsis thaliana] gi|2245139|emb|CAB10560.1| hypothetical protein [Arabidopsis thaliana] gi|7268533|emb|CAB78783.1| hypothetical protein [Arabidopsis thaliana] gi|20453387|gb|AAM19932.1| AT4g17800/dl4935c [Arabidopsis thaliana] gi|119657390|tpd|FAA00294.1| TPA: AT-hook motif nuclear localized protein 23 [Arabidopsis thaliana] gi|332658552|gb|AEE83952.1| putative AT-hook DNA-binding family protein [Arabidopsis thaliana]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 218/312 (69%), Positives = 234/312 (75%), Gaps = 34/312 (10%)

Query: 1   MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEE------HDNNNNNNNNNHRVGGAQFS 54
           MAGLDLGTA RYV+HQLHRPDLHL H  + D         H   ++ +NNN+        
Sbjct: 1   MAGLDLGTAFRYVNHQLHRPDLHLHHNSSSDDVTPGAGMGHFTVDDEDNNNN-------- 52

Query: 55  DGSDHHQGLDLVNAAGNSGGHG--------DIVARRPRGRPPGSKNKPKPPVIITRESAN 106
                HQGLDL +  G+    G        D+V RRPRGRPPGSKNKPKPPVIITRESAN
Sbjct: 53  -----HQGLDLASGGGSGSSGGGGGHGGGGDVVGRRPRGRPPGSKNKPKPPVIITRESAN 107

Query: 107 TLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRF 166
           TLRAHILEV NGCDVFDCVA YARRRQRGIC+LSGSGTVTNVSIRQP+AAGA+VTL G F
Sbjct: 108 TLRAHILEVTNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPSAAGAVVTLQGTF 167

Query: 167 EILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYE 226
           EILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYE
Sbjct: 168 EILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYE 227

Query: 227 RLPLDEDEQLQMQQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVE 286
           RLPL+EDEQ Q        GG         F +  AG  GGLPFFNLP+NM PNVQLPVE
Sbjct: 228 RLPLEEDEQQQQLGGGSNGGGNL-------FPEVAAGGGGGLPFFNLPMNMQPNVQLPVE 280

Query: 287 GWSGNAGVRPPF 298
           GW GN+G R PF
Sbjct: 281 GWPGNSGGRGPF 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800302|ref|XP_002868035.1| hypothetical protein ARALYDRAFT_493093 [Arabidopsis lyrata subsp. lyrata] gi|297313871|gb|EFH44294.1| hypothetical protein ARALYDRAFT_493093 [Arabidopsis lyrata subsp. lyrata]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 217/312 (69%), Positives = 235/312 (75%), Gaps = 32/312 (10%)

Query: 1   MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFS-DGSDH 59
           MAGLDLGTA RYV+HQLHRPDLHL H           N+++++     G   F+ D  D+
Sbjct: 1   MAGLDLGTAFRYVNHQLHRPDLHLHH-----------NSSSDDVTPGAGMGHFTVDDEDN 49

Query: 60  -----HQGLDLVNAAGNSGGHG--------DIVARRPRGRPPGSKNKPKPPVIITRESAN 106
                HQGLDL +  G+    G        D+V RRPRGRPPGSKNKPKPPVIITRESAN
Sbjct: 50  NNNNNHQGLDLASGGGSGSSGGGGGHGGGGDVVGRRPRGRPPGSKNKPKPPVIITRESAN 109

Query: 107 TLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRF 166
           TLRAHILEV NGCDVFDCVA YARRRQRGIC+LSGSGTVTNVSIRQP+AAGA+VTL G F
Sbjct: 110 TLRAHILEVTNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPSAAGAVVTLQGTF 169

Query: 167 EILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYE 226
           EILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYE
Sbjct: 170 EILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYE 229

Query: 227 RLPLDEDEQLQMQQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVE 286
           RLPL+EDEQ Q        GG         F +  AG  GGLPFFNLP+NM PNVQLPVE
Sbjct: 230 RLPLEEDEQQQQLGGGSNGGGNL-------FPEVAAGGGGGLPFFNLPMNMQPNVQLPVE 282

Query: 287 GWSGNAGVRPPF 298
           GW GN+  R PF
Sbjct: 283 GWPGNSSGRGPF 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89274231|gb|ABD65635.1| hypothetical protein 23.t00073 [Brassica oleracea]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 212/307 (69%), Positives = 234/307 (76%), Gaps = 24/307 (7%)

Query: 1   MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFSDGSDHH 60
           MAGLDLGTA  YV+HQLHRPDLHL H  A D         +      +G     D  ++H
Sbjct: 1   MAGLDLGTAFGYVNHQLHRPDLHLHHSSASD---------DVTPGAGLGHFTADDDDNNH 51

Query: 61  QGLDLVNAAGNSGGHG---------DIVARRPRGRPPGSKNKPKPPVIITRESANTLRAH 111
           QGLDL +  G+    G         ++V RRPRGRPPGSKNKPKPPVIITRESANTLRAH
Sbjct: 52  QGLDLASGGGSGSSGGGGGDGGGGGNVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAH 111

Query: 112 ILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSL 171
           ILEV +GCDVFDCVA YARRRQRGIC+LSGSGTVTNV+IRQP+AAGA+VTL G FEILSL
Sbjct: 112 ILEVTSGCDVFDCVATYARRRQRGICVLSGSGTVTNVTIRQPSAAGAVVTLQGTFEILSL 171

Query: 172 SGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLD 231
           SGSFLPPPAPPGATSLTIF+AGGQGQVVGGSVVGELTAAGPVIVIA+SFTNVAYERLPL+
Sbjct: 172 SGSFLPPPAPPGATSLTIFVAGGQGQVVGGSVVGELTAAGPVIVIASSFTNVAYERLPLE 231

Query: 232 EDEQLQMQQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLPVEGWSGN 291
           EDEQ  +    G +GG       NLF +  AG  GGLPFFNLP+NM  NVQLPVEGW GN
Sbjct: 232 EDEQQHLGGGGGSNGGG------NLFPEVSAGGGGGLPFFNLPMNMQSNVQLPVEGWPGN 285

Query: 292 AGVRPPF 298
           +G R PF
Sbjct: 286 SGGRGPF 292

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512004|ref|XP_003524711.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 201/286 (70%), Positives = 220/286 (76%), Gaps = 14/286 (4%)

Query: 1   MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDNNNNNNNNNHRVGGAQFSDGSDHH 60
           MAGLDLG+ASR+V + LH PDLHLQ        + D+       N     A F +  D  
Sbjct: 1   MAGLDLGSASRFVQN-LHLPDLHLQQNYQQPRHKRDSEEQETPPNPGTALAPFDNDDDKS 59

Query: 61  QGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCD 120
           QGL+L      + G GDIV RRPRGRP GSKNKPKPPVIITRESANTLRAHILEVG+G D
Sbjct: 60  QGLEL------ASGPGDIVGRRPRGRPSGSKNKPKPPVIITRESANTLRAHILEVGSGSD 113

Query: 121 VFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPA 180
           VFDCV  YARRRQRGIC+LSGSGTVTNVS+RQPAAAGA+V LHGRFEILSLSGSFLPPPA
Sbjct: 114 VFDCVTAYARRRQRGICVLSGSGTVTNVSLRQPAAAGAVVRLHGRFEILSLSGSFLPPPA 173

Query: 181 PPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEDE--QLQM 238
           PPGATSLTI+LAGGQGQVVGG+VVGELTAAGPVIVIAASFTNVAYERLPL+EDE  Q Q+
Sbjct: 174 PPGATSLTIYLAGGQGQVVGGNVVGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQQQL 233

Query: 239 QQASGGSGGAGGGNPNNLFADAGAGSAGGLPFFNLPLNMPPNVQLP 284
           Q  S  +  + G N NN F D     + GLPFFNLPLNM  NVQLP
Sbjct: 234 QIQSPATTSSQGNNNNNPFPDP----SSGLPFFNLPLNM-QNVQLP 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TAIR|locus:2129490	292	AT4G17800 [Arabidopsis thalian	0.953	0.972	0.640	6.3e-92
TAIR|locus:2063469	285	GIK "GIANT KILLER" [Arabidopsi	0.926	0.968	0.563	9.3e-75
TAIR|locus:2050946	317	AHL22 "AT2G45430" [Arabidopsis	0.734	0.690	0.522	1.6e-56
TAIR|locus:2118051	339	AT4G12050 "AT4G12050" [Arabido	0.614	0.539	0.582	3.3e-56
TAIR|locus:2132639	324	AT4G22810 "AT4G22810" [Arabido	0.593	0.546	0.588	1.3e-54
TAIR|locus:2084958	315	AHL19 "AT-hook motif nuclear-l	0.697	0.660	0.484	8.7e-51
TAIR|locus:2101916	265	AHL18 "AT3G60870" [Arabidopsis	0.765	0.860	0.457	3.6e-50
TAIR|locus:2011701	302	SOB3 "SUPPRESSOR OF PHYB-4#3"	0.724	0.715	0.502	1.2e-49
TAIR|locus:2045585	257	TEK "AT2G42940" [Arabidopsis t	0.540	0.626	0.577	6.7e-49
TAIR|locus:2037350	311	ESC "ESCAROLA" [Arabidopsis th	0.751	0.720	0.463	8.5e-49

TAIR|locus:2129490 AT4G17800 [Arabidopsis thaliana (taxid:3702)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 196/306 (64%), Positives = 211/306 (68%)

Query:     1 MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDXXXXXXXXXHRVGGAQFSDGSDHH 60
             MAGLDLGTA RYV+HQLHRPDLHL H  + D    D           V      D +++H
Sbjct:     1 MAGLDLGTAFRYVNHQLHRPDLHLHHNSSSD----DVTPGAGMGHFTVDD---EDNNNNH 53

Query:    61 QGLDLVN-----AAGNSGGHG---DIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHI 112
             QGLDL +     ++G  GGHG   D+V RRPRGRPPGSKNKPKPPVIITRESANTLRAHI
Sbjct:    54 QGLDLASGGGSGSSGGGGGHGGGGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHI 113

Query:   113 LEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLS 172
             LEV NGCDVFDCVA YARRRQRGIC+LSGSGTVTNVSIRQP+AAGA+VTL G FEILSLS
Sbjct:   114 LEVTNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPSAAGAVVTLQGTFEILSLS 173

Query:   173 GSFLPPPAPPGATSLTIFLAXXXXXXXXXXXXXELTAAGPVIVIAASFTNVAYERLPLDE 232
             GSFLPPPAPPGATSLTIFLA             ELTAAGPVIVIAASFTNVAYERLPL+E
Sbjct:   174 GSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEE 233

Query:   233 DEQLQMQQXXXXXXXXXXXNPNNLFADAGAGSAGGXXXXXXXXXXXXXVQLPVEGWSGNA 292
             DEQ Q                 NLF +  AG  GG             VQLPVEGW GN+
Sbjct:   234 DEQQQQ-------LGGGSNGGGNLFPEVAAGGGGGLPFFNLPMNMQPNVQLPVEGWPGNS 286

Query:   293 GVRPPF 298
             G R PF
Sbjct:   287 GGRGPF 292

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2063469 GIK "GIANT KILLER" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 173/307 (56%), Positives = 196/307 (63%)

Query:     1 MAGLDLGTASRYVHHQLHRPDLHLQHQPADDSEEHDXXXXXXXXXHRVGGAQFSDGSDHH 60
             MAGLDLGT SRYVH+     D     Q   D+   D         H           +HH
Sbjct:     1 MAGLDLGTTSRYVHNV----DGGGGGQFTTDNHHEDDGGAGGNHHHH------HHNHNHH 50

Query:    61 QGLDLVNAAGNSG-------GHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHIL 113
             QGLDL+ +  NSG       G GD+V RRPRGRP GSKNKPKPPVI+TRESANTLRAHIL
Sbjct:    51 QGLDLIASNDNSGLGGGGGGGSGDLVMRRPRGRPAGSKNKPKPPVIVTRESANTLRAHIL 110

Query:   114 EVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSG 173
             EVG+GCDVF+C++ YARRRQRGIC+LSG+GTVTNVSIRQP AAGA+VTL G FEILSLSG
Sbjct:   111 EVGSGCDVFECISTYARRRQRGICVLSGTGTVTNVSIRQPTAAGAVVTLRGTFEILSLSG 170

Query:   174 SFLPPPAPPGATSLTIFLAXXXXXXXXXXXXXELTAAGPVIVIAASFTNVAYERLPLDED 233
             SFLPPPAPPGATSLTIFLA             EL AAGPV+V+AASFTNVAYERLPLDE 
Sbjct:   171 SFLPPPAPPGATSLTIFLAGAQGQVVGGNVVGELMAAGPVMVMAASFTNVAYERLPLDEH 230

Query:   234 EQLQMQQXXXXXXXXXXXNPNNLFADAGAGSAGGXXXXXXXXXXXXXVQLPVEGWSGN-A 292
             E+  +Q               N++++A  G  GG              Q+ VE W GN A
Sbjct:   231 EE-HLQSGGGGGG-------GNMYSEA-TGGGGGLPFFNLPMSMP---QIGVESWQGNHA 278

Query:   293 GV-RPPF 298
             G  R PF
Sbjct:   279 GAGRAPF 285

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IDA

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0048440 "carpel development" evidence=IMP

GO:0048653 "anther development" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2050946 AHL22 "AT2G45430" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 126/241 (52%), Positives = 157/241 (65%)

Query:    10 SRYVHHQLHRPDLHLQHQPADDSEEHDXXXXXXXXXHRVGGAQFS-----DGSDHHQ-GL 63
             SR +H  LH P    QHQ     + H          HR+GG +       D ++H   G 
Sbjct:    14 SRDLH--LH-PHHQFQHQQQQQQQNHGHDIDQ----HRIGGLKRDRDADIDPNEHSSAGK 66

Query:    64 D--LVNAAGNSGGHG---DIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNG 118
             D     + G SGG G   + + RRPRGRP GSKNKPKPP+IITR+SAN L++H++EV NG
Sbjct:    67 DQSTPGSGGESGGGGGGDNHITRRPRGRPAGSKNKPKPPIIITRDSANALKSHVMEVANG 126

Query:   119 CDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAA----GAIVTLHGRFEILSLSGS 174
             CDV + V  +ARRRQRGIC+LSG+G VTNV+IRQPA+      ++V LHGRFEILSLSGS
Sbjct:   127 CDVMESVTVFARRRQRGICVLSGNGAVTNVTIRQPASVPGGGSSVVNLHGRFEILSLSGS 186

Query:   175 FLPPPAPPGATSLTIFLAXXXXXXXXXXXXXELTAAGPVIVIAASFTNVAYERLPLDEDE 234
             FLPPPAPP A+ LTI+LA              L A+GPV+++AASF N AYERLPL+ED+
Sbjct:   187 FLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEEDD 246

Query:   235 Q 235
             Q
Sbjct:   247 Q 247

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2118051 AT4G12050 "AT4G12050" [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 109/187 (58%), Positives = 142/187 (75%)

Query:    51 AQFSDGSDHHQGLDLVNAAGNSGG--HGDIVARRPRGRPPGSKNKPKPPVIITRESANTL 108
             A  + GS+  + + L    G SGG   G+ + RRPRGRP GSKNKPK P+IITR+SAN L
Sbjct:    87 ANTNSGSEGKE-MSLHGGEGGSGGGGSGEQMTRRPRGRPAGSKNKPKAPIIITRDSANAL 145

Query:   109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAA-GAIVTLHGRFE 167
             R H++E+G+GCD+ DC+A +ARRRQRG+C++SG+G+VTNV+IRQP +  G++V+LHGRFE
Sbjct:   146 RTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTIRQPGSPPGSVVSLHGRFE 205

Query:   168 ILSLSGSFLPPPAPPGATSLTIFLAXXXXXXXXXXXXXELTAAGPVIVIAASFTNVAYER 227
             ILSLSGSFLPPPAPP AT L+++LA              L  +GPV+V+AASF+N AYER
Sbjct:   206 ILSLSGSFLPPPAPPAATGLSVYLAGGQGQVVGGSVVGPLLCSGPVVVMAASFSNAAYER 265

Query:   228 LPLDEDE 234
             LPL+EDE
Sbjct:   266 LPLEEDE 272

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132639 AT4G22810 "AT4G22810" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 110/187 (58%), Positives = 140/187 (74%)

Query:    54 SDGSDHHQGLDLVNAAGNSGGH--GDI-VARRPRGRPPGSKNKPKPPVIITRESANTLRA 110
             S+G D    +D+   +G  GG   GD  + RRPRGRP GSKNKPKPP+IITR+SAN LR 
Sbjct:    79 SEGKD----IDIHGGSGEGGGGSGGDHQMTRRPRGRPAGSKNKPKPPIIITRDSANALRT 134

Query:   111 HILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAA---AGAIVTLHGRFE 167
             H++E+G+GCD+ + VA +ARRRQRG+C++SG+G VTNV+IRQP +    G++V+LHGRFE
Sbjct:   135 HVMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSHPSPGSVVSLHGRFE 194

Query:   168 ILSLSGSFLPPPAPPGATSLTIFLAXXXXXXXXXXXXXELTAAGPVIVIAASFTNVAYER 227
             ILSLSGSFLPPPAPP AT L+++LA              L  AGPV+V+AASF+N AYER
Sbjct:   195 ILSLSGSFLPPPAPPTATGLSVYLAGGQGQVVGGSVVGPLLCAGPVVVMAASFSNAAYER 254

Query:   228 LPLDEDE 234
             LPL+EDE
Sbjct:   255 LPLEEDE 261

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2084958 AHL19 "AT-hook motif nuclear-localized protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
 Identities = 111/229 (48%), Positives = 148/229 (64%)

Query:    16 QLHRPDLHLQHQPADDSEEHDXXXXXXXXXHRVGGAQFSDGSDHHQGLDLVNAAGNSGGH 75
             QL +PDLH+    A DS  ++         H     Q  D +++    D ++   +    
Sbjct:    24 QLKKPDLHISMNMAMDSGHNNHH-------HH----QEVDNNNNDDDRDNLSGDDHEPRE 72

Query:    76 GDIVA--RRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDCVANYARRRQ 133
             G + A  RRPRGRP GSKNKPKPP+ +TR+S N L++H++E+ +G DV + +A +ARRRQ
Sbjct:    73 GAVEAPTRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVMEIASGTDVIETLATFARRRQ 132

Query:   134 RGICILSGSGTVTNVSIRQP------AAAG--AIVTLHGRFEILSLSGSFLPPPAPPGAT 185
             RGICILSG+GTV NV++RQP      AA G  A++ L GRFEILSL+GSFLP PAPPG+T
Sbjct:   133 RGICILSGNGTVANVTLRQPSTAAVAAAPGGAAVLALQGRFEILSLTGSFLPGPAPPGST 192

Query:   186 SLTIFLAXXXXXXXXXXXXXELTAAGPVIVIAASFTNVAYERLPLDEDE 234
              LTI+LA              L AAGPV++IAA+F+N  YERLPL+E+E
Sbjct:   193 GLTIYLAGGQGQVVGGSVVGPLMAAGPVMLIAATFSNATYERLPLEEEE 241

GO:0005737 "cytoplasm" evidence=ISM

GO:0050832 "defense response to fungus" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2101916 AHL18 "AT3G60870" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 108/236 (45%), Positives = 144/236 (61%)

Query:    26 HQPADDSEEHDXXXXXXXXXHRVGGAQFSDGSDHHQ-GLDLVNAAGNSGGHGDIVARRPR 84
             H P   S +H           + G  +  +G + +  G DL   A    G  +I  RRPR
Sbjct:     8 HTPQFLSSDHQHYHHQNAGRQKRGREE--EGVEPNNIGEDL---ATFPSGEENIKKRRPR 62

Query:    85 GRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGT 144
             GRP GSKNKPK P+I+TR+SAN  R H++E+ N CDV + +A +ARRRQRG+C+L+G+G 
Sbjct:    63 GRPAGSKNKPKAPIIVTRDSANAFRCHVMEITNACDVMESLAVFARRRQRGVCVLTGNGA 122

Query:   145 VTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAXXXXXXXXXXXX 204
             VTNV++RQP   G +V+LHGRFEILSLSGSFLPPPAPP A+ L ++LA            
Sbjct:   123 VTNVTVRQPG--GGVVSLHGRFEILSLSGSFLPPPAPPAASGLKVYLAGGQGQVIGGSVV 180

Query:   205 XELTAAGPVIVIAASFTNVAYERLPLDEDEQLQMQQXXXXXXXXXXXNPNNLFADA 260
               LTA+ PV+V+AASF N +YERLPL+E+E+ + +                L  DA
Sbjct:   181 GPLTASSPVVVMAASFGNASYERLPLEEEEETEREIDGNAARAIGTQTQKQLMQDA 236

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:2011701 SOB3 "SUPPRESSOR OF PHYB-4#3" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 119/237 (50%), Positives = 150/237 (63%)

Query:     7 GTASRYVHHQLHRPDLHLQHQPADDSEEHDXXXXXXXXXHRVGGAQFSDGSDHHQGLDLV 66
             G ASRY H+ L RP+LH Q QP    + H           +   +     S+   G D V
Sbjct:     9 GGASRYFHN-LFRPELHHQLQP--QPQLHPLPQPQPQPQPQQQNSDDESDSNKDPGSDPV 65

Query:    67 NAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDCVA 126
              + G++G       +RPRGRPPGSKNKPKPPVI+TR+S N LR+H+LEV +G D+ + V 
Sbjct:    66 TS-GSTG-------KRPRGRPPGSKNKPKPPVIVTRDSPNVLRSHVLEVSSGADIVESVT 117

Query:   127 NYARRRQRGICILSGSGTVTNVSIRQPA--AA-------GAIVTLHGRFEILSLSGSFLP 177
              YARRR RG+ ILSG+GTV NVS+RQPA  AA       G +V LHGRFEILSL+G+ LP
Sbjct:   118 TYARRRGRGVSILSGNGTVANVSLRQPATTAAHGANGGTGGVVALHGRFEILSLTGTVLP 177

Query:   178 PPAPPGATSLTIFLAXXXXXXXXXXXXXELTAAGPVIVIAASFTNVAYERLPLDEDE 234
             PPAPPG+  L+IFL+              L A+GPVI++AASF+N  +ERLPL EDE
Sbjct:   178 PPAPPGSGGLSIFLSGVQGQVIGGNVVAPLVASGPVILMAASFSNATFERLPL-EDE 233

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0009640 "photomorphogenesis" evidence=RCA;IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2045585 TEK "AT2G42940" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 93/161 (57%), Positives = 126/161 (78%)

Query:    79 VARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDCVANYARRRQRGICI 138
             +A+RPRGRP GSKNKPKPP+I+T +S N+LRA+ +E+ +GCD+ + ++++ARR+QRG+CI
Sbjct:    51 MAKRPRGRPAGSKNKPKPPIIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQRGLCI 110

Query:   139 LSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAXXXXXX 198
             LS +G VTNV++RQPA++GAIVTLHGR+EILSL GS LPPPAP G T LTI+LA      
Sbjct:   111 LSANGCVTNVTLRQPASSGAIVTLHGRYEILSLLGSILPPPAPLGITGLTIYLAGPQGQV 170

Query:   199 XXXXXXXELTAAGPVIVIAASFTNVAYERLPLDEDEQLQMQ 239
                     L A+GPV+++AASF N  ++RLP+D+DE   MQ
Sbjct:   171 VGGGVVGGLIASGPVVLMAASFMNAVFDRLPMDDDEAASMQ 211

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0010529 "negative regulation of transposition" evidence=IMP

GO:0031490 "chromatin DNA binding" evidence=IDA

GO:0035067 "negative regulation of histone acetylation" evidence=IMP

GO:1900111 "positive regulation of histone H3-K9 dimethylation" evidence=IMP

TAIR|locus:2037350 ESC "ESCAROLA" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 114/246 (46%), Positives = 151/246 (61%)

Query:     7 GTASRYVHHQLHRPDLHLQH-QPADD----SEEHDXXXXXXXXXHRVGGAQFSDGS--DH 59
             G ASRY H+ L RP++H Q  QP        + H               ++ SD S  DH
Sbjct:     9 GGASRYFHN-LFRPEIHHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESDHSNKDH 67

Query:    60 HQ-GLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNG 118
             HQ G    +   +S   G    +RPRGRPPGSKNK KPP+I+TR+S N LR+H+LEV  G
Sbjct:    68 HQQGRPDSDPNTSSSAPG----KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPG 123

Query:   119 CDVFDCVANYARRRQRGICILSGSGTVTNVSIRQP---------AAAGAIVTLHGRFEIL 169
              D+ + V+ YARRR RG+ +L G+GTV+NV++RQP         +  G +VTLHGRFEIL
Sbjct:   124 ADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEIL 183

Query:   170 SLSGSFLPPPAPPGATSLTIFLAXXXXXXXXXXXXXELTAAGPVIVIAASFTNVAYERLP 229
             SL+G+ LPPPAPPGA  L+IFLA              L A+ PVI++AASF+N  +ERLP
Sbjct:   184 SLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLP 243

Query:   230 LDEDEQ 235
             ++E+E+
Sbjct:   244 IEEEEE 249

GO:0005737 "cytoplasm" evidence=ISM

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006325 "chromatin organization" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0003680 "AT DNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00290188 hypothetical protein (300 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	298
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	7e-40
cd11378	113	cd11378, DUF296, Domain of unknown function found	3e-27

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  134 bits (341), Expect = 7e-40
 Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 6/122 (4%)

Query: 108 LRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQP---AAAGAIVTLHG 164
            R H+L +  G D+ + +  +AR+R  G  +LSG G V+NV++RQP   A +  +VTL G
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 165 RFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVV-GELTAAGPVIVIAASFTNV 223
           RFEILSLSG+    P    +  L + LA   GQVVGG +  G + A G V+V   SF N 
Sbjct: 61  RFEILSLSGTIS--PGGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSFENA 118

Query: 224 AY 225
             
Sbjct: 119 RR 120

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  102 bits (256), Expect = 3e-27
 Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 5/115 (4%)

Query: 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPA---AAGAIVTLHGR 165
           R  +L +  G D+ + +  +AR       +LSG G V+N ++R P         VT  GR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 166 FEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASF 220
            EILSLSG+  P    P    L + LA   G+V+GG ++G L  AG V V+    
Sbjct: 61  LEILSLSGNISPDDGKPSG-HLHVSLADSDGRVIGGHLLGALV-AGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.95
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.9
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	89.76

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.95  E-value=7.6e-28  Score=198.42  Aligned_cols=118  Identities=25%  Similarity=0.429  Sum_probs=100.5

Q ss_pred             ceeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCC--CCCCeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380          108 LRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPA--AAGAIVTLHGRFEILSLSGSFLPPPAPPGAT  185 (298)
Q Consensus       108 mrphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~--s~g~~vtleG~FEILSLsGT~~p~~~~~~~~  185 (298)
                      ||+|++||++||||+++|.+||+++++..|++|++|+|++|+|++++  ....+.+++|+|||+||+|||.+.++ .+..
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g-~~~~   79 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG-KPFV   79 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT-EEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC-CCcc
Confidence            79999999999999999999999999988999999999999999984  33578899999999999999998433 2668


Q ss_pred             eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeecccccc
Q 022380          186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYER  227 (298)
Q Consensus       186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~R  227 (298)
                      ||||+|+|.+|+|+||||..+.+ ..++||++-.+....|+|
T Consensus        80 HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~  120 (120)
T PF03479_consen   80 HLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR  120 (120)
T ss_dssp             EEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence            99999999999999999995555 455777777777766665

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.90  E-value=2.9e-23  Score=178.40  Aligned_cols=122  Identities=16%  Similarity=0.229  Sum_probs=114.1

Q ss_pred             CCceeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCC---CCeeeeeeceEEEEeeeeccCCCCCC
Q 022380          106 NTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAA---GAIVTLHGRFEILSLSGSFLPPPAPP  182 (298)
Q Consensus       106 ~~mrphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~---g~~vtleG~FEILSLsGT~~p~~~~~  182 (298)
                      ..-|.+++||++|+|+++.|.+||+++++..++++|+|++++++||+++..   ..++.+.++||||||.|+|...+   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            446889999999999999999999999988899999999999999999843   36889999999999999999988   


Q ss_pred             CCCeeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCc
Q 022380          183 GATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLD  231 (298)
Q Consensus       183 ~~~hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~  231 (298)
                      +..|||++|++++|.++|||+..+++.. ++||+|-.+....++|.+++
T Consensus        84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~  131 (141)
T COG1661          84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDP  131 (141)
T ss_pred             CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCC
Confidence            7899999999999999999999999888 89999999999999999887

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=89.76  E-value=0.13  Score=28.37  Aligned_cols=13  Identities=46%  Similarity=0.843  Sum_probs=4.2

Q ss_pred             CCCCCCCCCCCCC
Q 022380           81 RRPRGRPPGSKNK   93 (298)
Q Consensus        81 rr~RGRP~GSknK   93 (298)
                      +|+||||+.+..|
T Consensus         1 ~r~RGRP~k~~~~   13 (13)
T PF02178_consen    1 KRKRGRPRKNAKK   13 (13)
T ss_dssp             S--SS--TT----
T ss_pred             CCcCCCCccccCC
Confidence            4899999987654

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	1e-30
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	1e-23
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	6e-18
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	1e-11
3htn_A	149	Putative DNA binding protein; DUF269 family protei	9e-08
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	5e-07

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  111 bits (279), Expect = 1e-30
 Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 93  KPKPPVIITRESANTLRAHILEVGNGCDVFDCVANYARRRQ-RGICILSGSGTVTNVSIR 151
                + ++  +A+T R + L +  G +VF  +  + ++ Q R   I   +G++T+V++R
Sbjct: 3   GDPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALR 62

Query: 152 QPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAG 211
                 A  +L G FE++SL+G+            L + ++   G ++GG ++   T   
Sbjct: 63  YAGQ-EATTSLTGTFEVISLNGTLEL-----TGEHLHLAVSDPYGVMLGGHMMPGCTVRT 116

Query: 212 PVIVIAASFTNVAYERLPLDE 232
            + ++      + + R P   
Sbjct: 117 TLELVIGELPALTFSRQPCAI 137

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 93.1 bits (231), Expect = 1e-23
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 108 LRAHILEVGNGCDVFDCVANYARRRQ-RGICILSGSGTVTNVSIRQPAAAGAIVTLHGRF 166
           +    L +  G D+   +    ++ +     I S  G ++ + IR   +  + + +   F
Sbjct: 2   IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADS-VSTLQVSAPF 60

Query: 167 EILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYE 226
           EILSLSG+            L I +A  QG+V GG ++          ++   +    + 
Sbjct: 61  EILSLSGTL-----TYQHCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFT 115

Query: 227 RLPLDE 232
           R     
Sbjct: 116 REFDPN 121

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 77.7 bits (191), Expect = 6e-18
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIR---QPAAAGAIVTLHGR 165
           R ++  V  G ++   + N+ ++      I++G GT+ N  I    +      ++ L G 
Sbjct: 10  RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGS 69

Query: 166 FEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAY 225
           +E++SL G+       P      + L   +G V GG +V        + +          
Sbjct: 70  YELISLIGNVSLKDGEP-FVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ--ELKGEKI 126

Query: 226 ERLP 229
           ER P
Sbjct: 127 ERKP 130

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 60.4 bits (146), Expect = 1e-11
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIR---QPAAAGAIVTLHGR 165
           +  +L +  G D+   +  +   +      +S  G V +  I    Q         L   
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 166 FEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAY 225
            EILSLSG+     + P    + + L G  G+V GG +      A  V V+    +  A 
Sbjct: 70  LEILSLSGNVSMKDSKP-FCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP--LSGEAP 125

Query: 226 ERLPLDE 232
           ER   ++
Sbjct: 126 ERAFDEQ 132

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 49.6 bits (118), Expect = 9e-08
 Identities = 16/127 (12%), Positives = 43/127 (33%), Gaps = 6/127 (4%)

Query: 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIR---QPAAAGAIVTLHGR 165
             +I+ + N  ++   +  + + +      ++G G +  +++R       A    T   +
Sbjct: 16  NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQ 75

Query: 166 FEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAY 225
            EI +L+G+            L I +       + G ++  +       V+     +   
Sbjct: 76  MEISNLTGNISSMNEQVYLH-LHITVGRSDYSALAGHLLSAIQNGAGEFVVEDY--SERI 132

Query: 226 ERLPLDE 232
            R    +
Sbjct: 133 SRTYNPD 139

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 47.3 bits (112), Expect = 5e-07
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 5/111 (4%)

Query: 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIR--QPAAAGAIVTLHGRF 166
             +++ + +G +V   +   AR          G G ++  +               +   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 167 EILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVG--ELTAAGPVIV 215
           E+ +++GS       P        +  G  Q  GG ++G    T +  + V
Sbjct: 73  EMANMTGSIAWKEGKPSIH-AHGTVTDGTFQGAGGHLLGLTVGTGSCEITV 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.97
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.97
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.96
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.96
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.95
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.92
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	97.56

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.97  E-value=6e-30  Score=215.62  Aligned_cols=120  Identities=21%  Similarity=0.288  Sum_probs=110.3

Q ss_pred             CceeEEEEeCCCccHHHHHHHHHHhcCc-ceEEEEeeeeeceEEEecCCCCCCeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380          107 TLRAHILEVGNGCDVFDCVANYARRRQR-GICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGAT  185 (298)
Q Consensus       107 ~mrphVLrV~pGeDVvesI~~fArr~~r-avcVLSg~GsVsnVTLRqp~s~g~~vtleG~FEILSLsGT~~p~~~~~~~~  185 (298)
                      +|++|++||++||||+++|.+||+++++ ++||++++|+|++++||+++.. .+++++|+|||+||+|||++.     ..
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~-----~~   74 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ-----HC   74 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS-----CE
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC-----CC
Confidence            4899999999999999999999999985 7899999999999999999874 478899999999999999985     38


Q ss_pred             eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380          186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE  232 (298)
Q Consensus       186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~  232 (298)
                      ||||+++|.+|+|+||||++++++.+++||++..|.+..|+|.||++
T Consensus        75 HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e  121 (142)
T 2p6y_A           75 HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPN  121 (142)
T ss_dssp             EEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEETT
T ss_pred             EEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCCC
Confidence            99999999999999999988777788999999999999999999865

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.97  E-value=5.5e-30  Score=218.67  Aligned_cols=127  Identities=21%  Similarity=0.393  Sum_probs=115.3

Q ss_pred             eeccCcCCceeEEEEeCCCccHHHHHHHHHHhcCc-ceEEEEeeeeeceEEEecCCCCCCeeeeeeceEEEEeeeeccCC
Q 022380          100 ITRESANTLRAHILEVGNGCDVFDCVANYARRRQR-GICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPP  178 (298)
Q Consensus       100 it~~s~~~mrphVLrV~pGeDVvesI~~fArr~~r-avcVLSg~GsVsnVTLRqp~s~g~~vtleG~FEILSLsGT~~p~  178 (298)
                      ++.++++.+|+|++||++||||+++|.+||+++++ ++||+|++|+|++|+||+++... +++++|+|||+||+|||++.
T Consensus        10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~   88 (154)
T 2hx0_A           10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT   88 (154)
T ss_dssp             --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT
T ss_pred             eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC
Confidence            34567889999999999999999999999999885 78999999999999999998644 78999999999999999985


Q ss_pred             CCCCCCCeeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380          179 PAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE  232 (298)
Q Consensus       179 ~~~~~~~hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~  232 (298)
                           ..||||+++|.+|+|+||||++++++.+++||++..|.+..|+|.||++
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e  137 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAI  137 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTT
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCCC
Confidence                 3899999999999999999988777778999999999999999999875

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.96  E-value=2e-29  Score=211.85  Aligned_cols=120  Identities=21%  Similarity=0.351  Sum_probs=108.9

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCCC---CeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380          109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAG---AIVTLHGRFEILSLSGSFLPPPAPPGAT  185 (298)
Q Consensus       109 rphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~g---~~vtleG~FEILSLsGT~~p~~~~~~~~  185 (298)
                      ++|++||++||||+++|.+||+++++..|+++++|+|++|+||+++...   ..++++|+|||+||+|||++.+++ ++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~-p~~   88 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE-PFV   88 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC-cee
Confidence            7999999999999999999999999877777999999999999987543   468999999999999999997554 579


Q ss_pred             eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380          186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE  232 (298)
Q Consensus       186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~  232 (298)
                      ||||+++|.+|+|+||||...+ .. ++||++.+|.+..|+|+| ++
T Consensus        89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~-~e  132 (143)
T 2dt4_A           89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP-TK  132 (143)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC-CT
T ss_pred             eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC-CC
Confidence            9999999999999999999888 55 899999999999999999 43

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.96  E-value=2.9e-29  Score=211.60  Aligned_cols=120  Identities=20%  Similarity=0.241  Sum_probs=109.3

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCCC---CeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380          109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAG---AIVTLHGRFEILSLSGSFLPPPAPPGAT  185 (298)
Q Consensus       109 rphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~g---~~vtleG~FEILSLsGT~~p~~~~~~~~  185 (298)
                      ++|++||++||||+++|.+||+++++..|+++++|+|++++||+++...   .+++++|+|||+||+|||++.+++ ++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~-p~~   88 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PFC   88 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC-cee
Confidence            6999999999999999999999999766666999999999999997654   478999999999999999997554 579


Q ss_pred             eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380          186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE  232 (298)
Q Consensus       186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~  232 (298)
                      ||||+|+ .+|+|+||||++.+|  .++||++.+|.+..|+|+||++
T Consensus        89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e  132 (146)
T 2h6l_A           89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ  132 (146)
T ss_dssp             EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred             eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence            9999999 999999999999885  6899999999999999999875

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.95  E-value=7.7e-28  Score=204.45  Aligned_cols=121  Identities=12%  Similarity=0.203  Sum_probs=109.6

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCCC---CeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380          109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAG---AIVTLHGRFEILSLSGSFLPPPAPPGAT  185 (298)
Q Consensus       109 rphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~g---~~vtleG~FEILSLsGT~~p~~~~~~~~  185 (298)
                      |.|++||++|+||+++|.+||+++++..|+++++|+|++|+||+++...   ..++++|+|||+||+|||++.+++ +..
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~-p~~   94 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ-VYL   94 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC-ceE
Confidence            7999999999999999999999999887777999999999999987532   378999999999999999997654 578


Q ss_pred             eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380          186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE  232 (298)
Q Consensus       186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~  232 (298)
                      ||||+|+|++|+|+||||..+ ++.+++||++..+.. .++|.+|++
T Consensus        95 HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~~D~~  139 (149)
T 3htn_A           95 HLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRTYNPD  139 (149)
T ss_dssp             EEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEEEETT
T ss_pred             EEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEeeCCc
Confidence            999999999999999999987 667889999999988 899998865

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.92  E-value=8.3e-25  Score=185.22  Aligned_cols=121  Identities=15%  Similarity=0.185  Sum_probs=105.8

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCCC---CeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380          109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAG---AIVTLHGRFEILSLSGSFLPPPAPPGAT  185 (298)
Q Consensus       109 rphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~g---~~vtleG~FEILSLsGT~~p~~~~~~~~  185 (298)
                      +.+++||++|+||+++|.+||+++++..++++++|++++++||.++...   ...+++ ++||+||+||+++.++. ++.
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~-p~~   90 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGK-PSI   90 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCC-ceE
Confidence            5689999999999999999999999888888999999999999887533   356788 89999999999986643 578


Q ss_pred             eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380          186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE  232 (298)
Q Consensus       186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~  232 (298)
                      |||++++|.+|+|+||||....|..+|+||++..+. ..|+|.+|++
T Consensus        91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~  136 (147)
T 3hwu_A           91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE  136 (147)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred             EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence            999999999999999999888665558999999875 5999998764

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=97.56  E-value=3.2e-05  Score=48.60  Aligned_cols=17  Identities=65%  Similarity=1.083  Sum_probs=15.2

Q ss_pred             CCCCCCCCCCCCCCCCC
Q 022380           79 VARRPRGRPPGSKNKPK   95 (298)
Q Consensus        79 ~~rr~RGRP~GSknK~k   95 (298)
                      ..|||||||.|||||.-
T Consensus         3 tpKrpRgRpkGSKNk~~   19 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKGA   19 (26)
T ss_dssp             SCCCCSSCCTTCCCCSC
T ss_pred             CCcCCCCCcCcccccCc
Confidence            57999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	298
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	1e-29
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	5e-20

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score =  107 bits (269), Expect = 1e-29
 Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 104 SANTLRAHILEVGNGCDVFDCVANYARRRQ-RGICILSGSGTVTNVSIRQPAAAGAIVTL 162
           +A+T R + L +  G +VF  +  + ++ Q R   I   +G++T+V++R      A  +L
Sbjct: 2   NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSL 60

Query: 163 HGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTN 222
            G FE++SL+G+            L + ++   G ++GG ++   T    + ++      
Sbjct: 61  TGTFEVISLNGTLELT-----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPA 115

Query: 223 VAYERLPLDE 232
           + + R P   
Sbjct: 116 LTFSRQPCAI 125

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 82.3 bits (203), Expect = 5e-20
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIR---QPAAAGAIVTLHGR 165
           +  +L +  G D+   +  +   +      +S  G V +  I    Q         L   
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 166 FEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAY 225
            EILSLSG+     + P    + + L G  G+V GG +      A  V V+    +  A 
Sbjct: 70  LEILSLSGNVSMKDSKPF-CHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP--LSGEAP 125

Query: 226 ERLPLDE 232
           ER   ++
Sbjct: 126 ERAFDEQ 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.96
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.92

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=2.2e-29  Score=209.11  Aligned_cols=124  Identities=23%  Similarity=0.404  Sum_probs=115.5

Q ss_pred             CcCCceeEEEEeCCCccHHHHHHHHHHhcC-cceEEEEeeeeeceEEEecCCCCCCeeeeeeceEEEEeeeeccCCCCCC
Q 022380          104 SANTLRAHILEVGNGCDVFDCVANYARRRQ-RGICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPP  182 (298)
Q Consensus       104 s~~~mrphVLrV~pGeDVvesI~~fArr~~-ravcVLSg~GsVsnVTLRqp~s~g~~vtleG~FEILSLsGT~~p~~~~~  182 (298)
                      +.+..|.|++||++||||+++|.+||++++ +++||++++|++++|+|++++. .....++|+|||+||+|||.+.+   
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~sl~G~I~~~~---   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLELTG---   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEETTE---
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEEEEEEeccCC---
Confidence            567889999999999999999999999988 6899999999999999999986 45678999999999999999876   


Q ss_pred             CCCeeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCchh
Q 022380          183 GATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDED  233 (298)
Q Consensus       183 ~~~hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~~  233 (298)
                        .||||+|+|.+|+|+||||++++++++++||++..|.+..|+|.++++.
T Consensus        78 --~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D~~t  126 (136)
T d2hx0a1          78 --EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAIS  126 (136)
T ss_dssp             --EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTTT
T ss_pred             --CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccCCCC
Confidence              7999999999999999999999999999999999999999999997753

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=1.3e-25  Score=185.26  Aligned_cols=120  Identities=20%  Similarity=0.249  Sum_probs=107.9

Q ss_pred             eeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCCC---CeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380          109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAG---AIVTLHGRFEILSLSGSFLPPPAPPGAT  185 (298)
Q Consensus       109 rphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~g---~~vtleG~FEILSLsGT~~p~~~~~~~~  185 (298)
                      |.|++||++||||+++|.+||+++++..|++|++|++++|+||+++...   ..+.++|+|||+||+|||...+++ +..
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~-p~~   88 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PFC   88 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC-cEE
Confidence            7899999999999999999999999999999999999999999876433   467999999999999999987755 578


Q ss_pred             eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380          186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE  232 (298)
Q Consensus       186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~  232 (298)
                      |+|+++++ +|+|+||||..+++.  ++++++-++.+..++|.||++
T Consensus        89 HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~~~~~R~~D~~  132 (138)
T d2h6la1          89 HIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSGEAPERAFDEQ  132 (138)
T ss_dssp             EEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBSCCCBEEECTT
T ss_pred             EEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecCCceEEecCCc
Confidence            99999997 799999999988775  478888899999999999765