Citrus Sinensis ID: 022396

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MLLCLLPIRSRTMSNLLSFELAISTPKSALEKSSLTSVKTPLISISSTKQLKITEASHSFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGQRHNVLSI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccHHcccccEEEEccccHHHHHHHccccccccccccccccccccHcccccccccccccccccccccccccccHccccccccHHHcccccEHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHcccHHcEccc
Coil and Loop (DISEMBL)
MLLCLLPIRSRTMSNLLSFELAIStpksalekssltsvktplisisstkqlKITEASHsfktntlssshrtsrqVCGVVTanaemeedqsekevaegytltQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCrtradeesepTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSethdsledCDAVARLATRCLSAVSAYDKTLEHVETLDSAQakfddilnspsvDVACEKIKSLAKAKELDSSLILLINgqrhnvlsi
Flexible Loop (DISEMBL)
MLLCLLPIRSRTMSNLLSFELAISTpksalekssltsvktplisisstkqlkiTEASHSFktntlssshrtsrqVCGVVTANaemeedqsekevaegYTLTQFCDKIIDvflnekprvkqwrkylvfredwnkyrESFYNRcrtradeeseptmkEKLISLARKVKKIDDEMESHYELLkeiqdsptdinAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKakeldsslillingqrhnvlsi
Low Complexity Region (SEG)
MLLCLLPIRSRTMSNLLSFELAISTPKSALEKSSLTSVKTPLISISSTKQLKITEASHSFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGQRHNVLSI
Disordered region (IsUnstruct)
**LCLLPIRSRTMSNLLSFELAI***********************************************************************AEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCR*********************************ELLKEI***PTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLING********
Disordered Region (DISOPRED)
MLLCLL*IRSRTMSNLLSFELAISTPKSALEKSSLTSVK***********************************************************TLTQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCRT*************LISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGQRHNVLSI
Disordered Region (DISEMBL)
MLLCLLPIRSRTMSNLLSFELAISTPKS*********VKTPLISISSTKQLKITEASHSF*************QVCGVVTANAE**********AEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCR**********MKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGQRHNVLSI
Disordered Region (DISPRO)
MLLCLLPIRSRTMSNLLSFELAISTPKSALEKSSLT*********************************************************VAEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGQRHN*LS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLCLLPIRSRTMSNLLSFELAISTPKSALEKSSLTSVKTPLISISSTKQLKITEASHSFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGQRHNVLSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
Q84WN0	427	Uncharacterized protein A	yes	no	0.755	0.526	0.698	4e-91

>sp|Q84WN0|Y4920_ARATH Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis thaliana GN=At4g37920 PE=1 SV=2

 Score =  334 bits (857), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 162/232 (69%), Positives = 192/232 (82%), Gaps = 7/232 (3%)

Query: 59  SFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRV 118
           +F T+T++ +  TS +V   V       ED  E EVAEGYT+ QFCDKIID+FLNEKP+V
Sbjct: 49  TFATDTVTYNGTTSAEVKSSV-------EDPMEVEVAEGYTMAQFCDKIIDLFLNEKPKV 101

Query: 119 KQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYEL 178
           KQW+ YLV R++WNKY  +FY RCR RAD E++P +K+KL+SL  KVKKID EME H +L
Sbjct: 102 KQWKTYLVLRDEWNKYSVNFYKRCRIRADTETDPILKQKLVSLESKVKKIDKEMEKHNDL 161

Query: 179 LKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAY 238
           LKEIQ++PTDINA+ A+RR+DFTGEFFRY++L+SET D LED DAVARLATRCLSAVSAY
Sbjct: 162 LKEIQENPTDINAIAAKRRRDFTGEFFRYVTLLSETLDGLEDRDAVARLATRCLSAVSAY 221

Query: 239 DKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLING 290
           D TLE VETLD+AQAKF+DILNSPSVD ACEKI+SLAKAKELDSSLILLIN 
Sbjct: 222 DNTLESVETLDTAQAKFEDILNSPSVDSACEKIRSLAKAKELDSSLILLINS 273

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
359495804	431	PREDICTED: uncharacterized protein At4g3	0.929	0.642	0.650	3e-93
356497669	432	PREDICTED: uncharacterized protein At4g3	0.771	0.532	0.692	6e-92
297798078	643	hypothetical protein ARALYDRAFT_327981 [	0.912	0.423	0.625	2e-90
357485321	422	hypothetical protein MTR_5g030900 [Medic	0.684	0.483	0.745	2e-89
79499023	427	uncharacterized protein [Arabidopsis tha	0.755	0.526	0.698	2e-89
27754707	445	unknown protein [Arabidopsis thaliana]	0.755	0.505	0.698	4e-89
4467098	673	putative protein [Arabidopsis thaliana]	0.751	0.332	0.701	5e-89
388520063	436	unknown [Lotus japonicus]	0.788	0.538	0.672	4e-88
449457285	435	PREDICTED: uncharacterized protein At4g3	0.906	0.620	0.618	4e-86
242093206	411	hypothetical protein SORBIDRAFT_10g02104	0.674	0.489	0.613	5e-70

>gi|359495804|ref|XP_003635095.1| PREDICTED: uncharacterized protein At4g37920, chloroplastic-like [Vitis vinifera] gi|297736678|emb|CBI25695.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/286 (65%), Positives = 219/286 (76%), Gaps = 9/286 (3%)

Query: 13  MSNLLSFELAI-STPKSALEKSSLTSVKTPLISISSTKQLKITEASHSFKTNTLSSSHR- 70
           MSNLL F+L + +T K ++   +L S    L SISS      ++ S S   N+ +   R 
Sbjct: 1   MSNLLGFKLLLCNTTKPSVLNQNLFSASILLPSISSPPLFLPSKQSDSLTPNSRTRKGRG 60

Query: 71  TSRQVCGVVTANA-------EMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRVKQWRK 123
           TS  V     AN+           +Q E EVA GYT+TQFCDKIIDVF+NEKP++K+WRK
Sbjct: 61  TSDAVLSNFRANSTANSIGAAEVAEQVEVEVANGYTITQFCDKIIDVFMNEKPKLKEWRK 120

Query: 124 YLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQ 183
           YLVFRE+WNKYRE+FYNRC+TRA  E++P +K+KLI L RKVKKIDDEME H ELL+E+Q
Sbjct: 121 YLVFREEWNKYREAFYNRCQTRAYAETDPVIKKKLIELGRKVKKIDDEMERHTELLEEVQ 180

Query: 184 DSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLE 243
            SP D+NA+V RRRKDFTGEFFR+LSL+SET+DSLED DA+ARL  RCLSAVSAYD TLE
Sbjct: 181 SSPMDVNAIVVRRRKDFTGEFFRHLSLLSETYDSLEDRDAMARLGARCLSAVSAYDNTLE 240

Query: 244 HVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLIN 289
            VETLD AQAKFDDILNSPS+DVACEKIKSLAKAKELDSSLILLIN
Sbjct: 241 IVETLDVAQAKFDDILNSPSIDVACEKIKSLAKAKELDSSLILLIN 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497669|ref|XP_003517682.1| PREDICTED: uncharacterized protein At4g37920, chloroplastic-like [Glycine max]

 Score =  343 bits (879), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 162/234 (69%), Positives = 194/234 (82%), Gaps = 4/234 (1%)

Query: 57  SHSFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKP 116
           + +FK + L  +   S Q     TA AE    + E E+A+GYT+TQFCDK+ID FLNEK 
Sbjct: 55  AQNFKPHILLCTSLPSPQASSASTAQAE----EHEVEIAKGYTMTQFCDKMIDFFLNEKT 110

Query: 117 RVKQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHY 176
           + K+WRKYL+FRE+W KYR+ FYNRC+ RAD E++P MKEK ISL RK+KKIDDEME HY
Sbjct: 111 KSKEWRKYLIFREEWKKYRDRFYNRCQRRADMENDPVMKEKFISLRRKLKKIDDEMEGHY 170

Query: 177 ELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVS 236
           ELL EIQDSP DINA+VARRRKDFTGEFF YLSL+S+T+DSLED D ++RL +RCLSAVS
Sbjct: 171 ELLMEIQDSPMDINAIVARRRKDFTGEFFHYLSLISDTYDSLEDRDGISRLGSRCLSAVS 230

Query: 237 AYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLING 290
           AYD TLE++ETLD+AQAKFDDILNSPS+D+AC+KIKSLAKAKELDSSLILLI+ 
Sbjct: 231 AYDNTLENIETLDAAQAKFDDILNSPSIDIACQKIKSLAKAKELDSSLILLISS 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798078|ref|XP_002866923.1| hypothetical protein ARALYDRAFT_327981 [Arabidopsis lyrata subsp. lyrata] gi|297312759|gb|EFH43182.1| hypothetical protein ARALYDRAFT_327981 [Arabidopsis lyrata subsp. lyrata]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/283 (62%), Positives = 217/283 (76%), Gaps = 11/283 (3%)

Query: 10  SRTMSNLLSFELAISTPKSALEKSSLTSVKTPLISISS--TKQLKITEASH-SFKTNTLS 66
            + M+NLL   +  S+    +  SS  S +T L+  S+      KI ++S  +F ++T++
Sbjct: 215 GQKMANLLETSIFFSSADKLISFSSHNS-QTHLLPFSAFINGGRKIRKSSTITFASDTVT 273

Query: 67  SSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLV 126
            S  TS +V   V       ED  E EVAEGYT+ QFCDKIID+FLNEKP+VKQW+ YLV
Sbjct: 274 YSSITSTEVKSFV-------EDPMEVEVAEGYTMAQFCDKIIDLFLNEKPKVKQWKTYLV 326

Query: 127 FREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSP 186
            R++WNKY  +FY RCR RAD E++P +K+KL+SL  KVKKID+EME H +LLKEIQ++P
Sbjct: 327 LRDEWNKYSVNFYRRCRIRADSETDPILKQKLLSLESKVKKIDEEMEKHNDLLKEIQENP 386

Query: 187 TDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVE 246
           TDINA+ A+RR+DFTGEFFRY++L+SET D LED DAVARLATRCLSAVSAYD TLE VE
Sbjct: 387 TDINAIAAKRRRDFTGEFFRYVALLSETLDGLEDRDAVARLATRCLSAVSAYDNTLESVE 446

Query: 247 TLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLIN 289
           TLDSAQAKFDDILNSPSVD ACEKI+SLAK+KELDSSLILLIN
Sbjct: 447 TLDSAQAKFDDILNSPSVDAACEKIRSLAKSKELDSSLILLIN 489

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485321|ref|XP_003612948.1| hypothetical protein MTR_5g030900 [Medicago truncatula] gi|163889367|gb|ABY48137.1| putative protein [Medicago truncatula] gi|355514283|gb|AES95906.1| hypothetical protein MTR_5g030900 [Medicago truncatula]

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 183/204 (89%)

Query: 87  EDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCRTRA 146
           E+Q++ E+ +GYT+TQFCDK+ID+FLNEK + K+WRKYLVFR++W KYR SF+ RC+ RA
Sbjct: 71  EEQADIEIVKGYTMTQFCDKMIDLFLNEKTKSKEWRKYLVFRDEWKKYRNSFFIRCQRRA 130

Query: 147 DEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFR 206
           D E++PTMKEK  SL R+VKKIDDEME HYELLKEIQD PTDINA+VARRRKDFTGEFFR
Sbjct: 131 DMENDPTMKEKFTSLGRRVKKIDDEMEGHYELLKEIQDFPTDINAIVARRRKDFTGEFFR 190

Query: 207 YLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDV 266
           YLSL+++T+DSL+D D +ARL  +CLSAV AYD TL ++ETLD+AQAKFDDILNSPS+DV
Sbjct: 191 YLSLIADTYDSLDDRDGIARLGAKCLSAVGAYDNTLMNMETLDAAQAKFDDILNSPSIDV 250

Query: 267 ACEKIKSLAKAKELDSSLILLING 290
           AC+KIKSLAKAKELDSSLILLI+G
Sbjct: 251 ACKKIKSLAKAKELDSSLILLISG 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79499023|ref|NP_195505.2| uncharacterized protein [Arabidopsis thaliana] gi|209574320|sp|Q84WN0.2|Y4920_ARATH RecName: Full=Uncharacterized protein At4g37920, chloroplastic; Flags: Precursor gi|332661453|gb|AEE86853.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/232 (69%), Positives = 192/232 (82%), Gaps = 7/232 (3%)

Query: 59  SFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRV 118
           +F T+T++ +  TS +V   V       ED  E EVAEGYT+ QFCDKIID+FLNEKP+V
Sbjct: 49  TFATDTVTYNGTTSAEVKSSV-------EDPMEVEVAEGYTMAQFCDKIIDLFLNEKPKV 101

Query: 119 KQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYEL 178
           KQW+ YLV R++WNKY  +FY RCR RAD E++P +K+KL+SL  KVKKID EME H +L
Sbjct: 102 KQWKTYLVLRDEWNKYSVNFYKRCRIRADTETDPILKQKLVSLESKVKKIDKEMEKHNDL 161

Query: 179 LKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAY 238
           LKEIQ++PTDINA+ A+RR+DFTGEFFRY++L+SET D LED DAVARLATRCLSAVSAY
Sbjct: 162 LKEIQENPTDINAIAAKRRRDFTGEFFRYVTLLSETLDGLEDRDAVARLATRCLSAVSAY 221

Query: 239 DKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLING 290
           D TLE VETLD+AQAKF+DILNSPSVD ACEKI+SLAKAKELDSSLILLIN 
Sbjct: 222 DNTLESVETLDTAQAKFEDILNSPSVDSACEKIRSLAKAKELDSSLILLINS 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754707|gb|AAO22797.1| unknown protein [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 162/232 (69%), Positives = 192/232 (82%), Gaps = 7/232 (3%)

Query: 59  SFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRV 118
           +F T+T++ +  TS +V   V       ED  E EVAEGYT+ QFCDKIID+FLNEKP+V
Sbjct: 67  TFATDTVTYNGTTSAEVKSSV-------EDPMEVEVAEGYTMAQFCDKIIDLFLNEKPKV 119

Query: 119 KQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYEL 178
           KQW+ YLV R++WNKY  +FY RCR RAD E++P +K+KL+SL  KVKKID EME H +L
Sbjct: 120 KQWKTYLVLRDEWNKYSVNFYKRCRIRADTETDPILKQKLVSLESKVKKIDKEMEKHNDL 179

Query: 179 LKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAY 238
           LKEIQ++PTDINA+ A+RR+DFTGEFFRY++L+SET D LED DAVARLATRCLSAVSAY
Sbjct: 180 LKEIQENPTDINAIAAKRRRDFTGEFFRYVALLSETLDGLEDRDAVARLATRCLSAVSAY 239

Query: 239 DKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLING 290
           D TLE VETLD+AQAKF+DILNSPSVD ACEKI+SLAKAKELDSSLILLIN 
Sbjct: 240 DNTLESVETLDTAQAKFEDILNSPSVDSACEKIRSLAKAKELDSSLILLINS 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4467098|emb|CAB37532.1| putative protein [Arabidopsis thaliana] gi|7270775|emb|CAB80457.1| putative protein [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 162/231 (70%), Positives = 192/231 (83%), Gaps = 7/231 (3%)

Query: 59  SFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRV 118
           +F T+T++ +  TS +V   V       ED  E EVAEGYT+ QFCDKIID+FLNEKP+V
Sbjct: 295 TFATDTVTYNGTTSAEVKSSV-------EDPMEVEVAEGYTMAQFCDKIIDLFLNEKPKV 347

Query: 119 KQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYEL 178
           KQW+ YLV R++WNKY  +FY RCR RAD E++P +K+KL+SL  KVKKID EME H +L
Sbjct: 348 KQWKTYLVLRDEWNKYSVNFYKRCRIRADTETDPILKQKLVSLESKVKKIDKEMEKHNDL 407

Query: 179 LKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAY 238
           LKEIQ++PTDINA+ A+RR+DFTGEFFRY++L+SET D LED DAVARLATRCLSAVSAY
Sbjct: 408 LKEIQENPTDINAIAAKRRRDFTGEFFRYVTLLSETLDGLEDRDAVARLATRCLSAVSAY 467

Query: 239 DKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLIN 289
           D TLE VETLD+AQAKF+DILNSPSVD ACEKI+SLAKAKELDSSLILLIN
Sbjct: 468 DNTLESVETLDTAQAKFEDILNSPSVDSACEKIRSLAKAKELDSSLILLIN 518

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520063|gb|AFK48093.1| unknown [Lotus japonicus]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 160/238 (67%), Positives = 193/238 (81%), Gaps = 3/238 (1%)

Query: 58  HSFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPR 117
            +FK  TL      S Q     TA  E   +Q E E+ +G T+TQFCDK+ID+FLNEK +
Sbjct: 57  QNFKPCTLLCGSLPSPQASSASTAQVE---EQEETEIVKGCTMTQFCDKMIDLFLNEKTK 113

Query: 118 VKQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYE 177
            K+WRKYL+FRE+W KYR+SF++R ++RAD E++P +K+K ISL R+VKKIDDEME H  
Sbjct: 114 SKEWRKYLIFREEWKKYRDSFFSRYQSRADMENDPIIKDKFISLERRVKKIDDEMEGHCN 173

Query: 178 LLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSA 237
           LLKEIQD PTDINA+VARRRKDFTGEFFRYLSLV++T+DSLED D ++RL TRCLSAV+A
Sbjct: 174 LLKEIQDFPTDINAIVARRRKDFTGEFFRYLSLVADTYDSLEDRDGISRLGTRCLSAVTA 233

Query: 238 YDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGQRHNV 295
           YD TLE+VETLD+AQAKFDDILNSPS+DVAC+KIKSLAKAKELDSSLILLI+    N 
Sbjct: 234 YDNTLENVETLDTAQAKFDDILNSPSIDVACQKIKSLAKAKELDSSLILLISSAWANA 291

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457285|ref|XP_004146379.1| PREDICTED: uncharacterized protein At4g37920, chloroplastic-like [Cucumis sativus] gi|449523604|ref|XP_004168813.1| PREDICTED: uncharacterized protein At4g37920, chloroplastic-like [Cucumis sativus]

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 178/288 (61%), Positives = 218/288 (75%), Gaps = 18/288 (6%)

Query: 13  MSNLLSFELAISTPKSALEKSSLTSVKTPLISISSTKQLKITEASHSFKTNTLSSSHRTS 72
            +N L F+  +S+ K  +  S  T++  PL SI S    K +            S +RTS
Sbjct: 3   FTNHLPFQFYVSSTKPFIFPSFSTTL-NPLPSIYSASPFKPS-------PKISKSDNRTS 54

Query: 73  RQVCG---VVTANAEM-------EEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRVKQWR 122
             +     +  A+A +       +E+Q E EVA+GY+L+QFCDKIID+FLNEKP+ K+WR
Sbjct: 55  VTITAPLQIFNASARVNDVATSEKEEQVEMEVAKGYSLSQFCDKIIDIFLNEKPKTKEWR 114

Query: 123 KYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEI 182
           K+LVFRE+W KYRESFY+ C+ RAD E +P MKEKLISL RKVKKIDDEME H ELLKE+
Sbjct: 115 KFLVFREEWKKYRESFYSHCQRRADWEDDPIMKEKLISLRRKVKKIDDEMEIHSELLKEL 174

Query: 183 QDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTL 242
           QDSPTDINA+VA+R K+FT EFF++L+L+SETHDSLED DAVARLA RCL+AVSAY++TL
Sbjct: 175 QDSPTDINAIVAKRHKEFTDEFFKFLTLISETHDSLEDRDAVARLAARCLAAVSAYNRTL 234

Query: 243 EHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLING 290
           E+VETLDSAQ KFD+ILNSPS+DVACEKI SLAKAKELDSSLILLIN 
Sbjct: 235 ENVETLDSAQVKFDNILNSPSLDVACEKIASLAKAKELDSSLILLINS 282

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093206|ref|XP_002437093.1| hypothetical protein SORBIDRAFT_10g021040 [Sorghum bicolor] gi|241915316|gb|EER88460.1| hypothetical protein SORBIDRAFT_10g021040 [Sorghum bicolor]

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 124/202 (61%), Positives = 164/202 (81%), Gaps = 1/202 (0%)

Query: 88  DQSEKEVAEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCRTRAD 147
           DQ+E EVA GYT+T+ CDK I++F+ +KP  K WRK LVFRE+W +YRE FY RC+ R D
Sbjct: 67  DQTEAEVAMGYTMTEICDKFIELFMYKKPETKDWRKLLVFREEWRRYREHFYKRCQVRID 126

Query: 148 EESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRY 207
            +++P++K+KL+ LARKVKKID+E+E H EL  E++++P DINA+VARRRKDFTGEFFR+
Sbjct: 127 MDTDPSLKQKLVVLARKVKKIDNEIEKHMELFNELRENPADINAIVARRRKDFTGEFFRH 186

Query: 208 LSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVA 267
           L+ +   ++ L++ D + RL  +CLSA+ AYD TLE ++ ++SAQ KFDDILNS S+D A
Sbjct: 187 LNFLVNAYNGLDERDGIVRLGAKCLSAIHAYDCTLEQLD-IESAQLKFDDILNSSSLDGA 245

Query: 268 CEKIKSLAKAKELDSSLILLIN 289
           C+KIKSLAKAKELDSSLILLIN
Sbjct: 246 CDKIKSLAKAKELDSSLILLIN 267

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TAIR|locus:2121036	427	AT4G37920 "AT4G37920" [Arabido	0.899	0.627	0.622	1e-82
TAIR|locus:2035957	414	AT1G36320 "AT1G36320" [Arabido	0.687	0.495	0.444	2.3e-46

TAIR|locus:2121036 AT4G37920 "AT4G37920" [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 175/281 (62%), Positives = 214/281 (76%)

Query:    13 MSNLLSFELAISTPKSALE---KSSLTSVKTPLISISSTKQLKITEASH-SFKTNTLSSS 68
             M+NLL   +  S+    L    K+S T    P  +  +  + KI ++S  +F T+T++ +
Sbjct:     1 MANLLETSIFFSSADKLLSFPPKNSQTH-HLPFSAFINGGR-KIRKSSTITFATDTVTYN 58

Query:    69 HRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLVFR 128
               TS +V   V       ED  E EVAEGYT+ QFCDKIID+FLNEKP+VKQW+ YLV R
Sbjct:    59 GTTSAEVKSSV-------EDPMEVEVAEGYTMAQFCDKIIDLFLNEKPKVKQWKTYLVLR 111

Query:   129 EDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTD 188
             ++WNKY  +FY RCR RAD E++P +K+KL+SL  KVKKID EME H +LLKEIQ++PTD
Sbjct:   112 DEWNKYSVNFYKRCRIRADTETDPILKQKLVSLESKVKKIDKEMEKHNDLLKEIQENPTD 171

Query:   189 INAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETL 248
             INA+ A+RR+DFTGEFFRY++L+SET D LED DAVARLATRCLSAVSAYD TLE VETL
Sbjct:   172 INAIAAKRRRDFTGEFFRYVTLLSETLDGLEDRDAVARLATRCLSAVSAYDNTLESVETL 231

Query:   249 DSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLIN 289
             D+AQAKF+DILNSPSVD ACEKI+SLAKAKELDSSLILLIN
Sbjct:   232 DTAQAKFEDILNSPSVDSACEKIRSLAKAKELDSSLILLIN 272

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2035957 AT1G36320 "AT1G36320" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 92/207 (44%), Positives = 143/207 (69%)

Query:    84 EMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRVKQWRKYLVFREDWNKYRESFYNRCR 143
             E ++D SE+ V +   + + CDK+I+VF+ +KP    WR+ L F ++W+  R  FY RC+
Sbjct:    77 EEKKDGSEEVVVDNQRMIKVCDKLIEVFMVDKPTPSDWRRLLAFSKEWDSIRPHFYKRCQ 136

Query:   144 TRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSP-TDINAVVARRRKDFTG 202
              RAD E  P MK K+  LARK+K++D++++ H ELL  I+ +P  +I  +VARRRKDFT 
Sbjct:   137 ERADSEDNPEMKHKVHRLARKLKEVDEDIQRHNELLNVIKRTPPAEIGELVARRRKDFTN 196

Query:   203 EFFRYLSLVSETH-DSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNS 261
             EFF +L  V+E++ D+ ++ +A+A L    ++AV AYD + E ++ L++A+ K  DI+NS
Sbjct:   197 EFFEHLHTVAESYYDNPDEQNALASLGKLSIAAVQAYDTSTESIDALNAAEMKLQDIINS 256

Query:   262 PSVDVACEKIKSLAKAKELDSSLILLI 288
             PS+D AC KI SLA+  +LDS+L+L+I
Sbjct:   257 PSLDAACRKIDSLAEKNQLDSALVLMI 283


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.351    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      298       298   0.00094  115 3  11 22  0.41    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  204 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.12u 0.17s 31.29t   Elapsed:  00:00:02
  Total cpu time:  31.12u 0.17s 31.29t   Elapsed:  00:00:02
  Start:  Thu May  9 20:19:40 2013   End:  Thu May  9 20:19:42 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_7000208 annotation not avaliable (643 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 84/245 (34%)

Query: 100 LTQFCDKIIDVFLN---EKPRVK---QWRKY----LVFREDWNKYR-ESFYNRCR----T 144
            T   D   ++ L     +  ++   + + Y    LV     N     +F   C+    T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 145 R---------ADEESEPTMKEKLISLARKVKKIDDEMESHYELL-----KEIQDSP---T 187
           R         A   +  ++    ++L        DE++    LL        QD P    
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLT------PDEVK---SLLLKYLDCRPQDLPREVL 323

Query: 188 DIN----AVVARRRKDF--TGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKT 241
             N    +++A   +D   T + ++++           +CD +  +    L         
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHV-----------NCDKLTTIIESSL--------- 363

Query: 242 LEHVETLDSA--QAKFDD--ILNSPSVDVACEKIKSL-AKAKELDSSLIL-------LIN 289
                 L+ A  +  FD   +   PS  +    +  +     + D  +++       L+ 
Sbjct: 364 ----NVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 290 GQRHN 294
            Q   
Sbjct: 419 KQPKE 423

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 35/248 (14%), Positives = 72/248 (29%), Gaps = 75/248 (30%)

Query: 87  EDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRV------------KQWRKYLVFRED---- 130
           ++   K+V +    +    + ID  +  K  V            KQ      F E+    
Sbjct: 31  DNFDCKDVQD-MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 131 -----WNKYRE---------SFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHY 176
                 +  +            Y   R R   +++   K   +S  +   K+        
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLR------- 141

Query: 177 ELLKEIQDSP------------TDINAVVARRRK---DFTGEFFRYLSL--VSETHDSLE 219
           + L E++ +             T +   V    K       + F +L+L   +     LE
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLE 200

Query: 220 DCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKE 279
                  L          +    +H   +          L   S+     +++ L K+K 
Sbjct: 201 ------MLQKLLYQIDPNWTSRSDHSSNI---------KLRIHSIQ---AELRRLLKSKP 242

Query: 280 LDSSLILL 287
            ++ L++L
Sbjct: 243 YENCLLVL 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00